G137-M11-Index-15_ATGTCA_BC9WPLANXX_L001_001.R1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	G137-M11-Index-15_ATGTCA_BC9WPLANXX_L001_001.R1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	13823097
Sequences flagged as poor quality	0
Sequence length	50
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAGAATCTCGTAT	493530	3.5703287041970406	TruSeq Adapter, Index 15 (97% over 40bp)
GCCGGCCCCCCCGAGTGTCCGGGCCCCCCGCCCCACCGGGGGCCCGCTGG	22244	0.16091907623884866	No Hit
CTGGCTTCCTCGGCCCCGGGATTCGGCGAAAGCTGCGGCCGGAGGGCTGT	18845	0.13632979642695123	No Hit
GTCCGCGGGGCCCGACGCCGCGGGGGCGAAACCCGGCGCGCGGAGGGGAG	17291	0.12508774263828143	No Hit
CTCGGCTTCGTCGGGAGACGCGTGACCGACGGTCCCCCCGGGACCCGACG	16787	0.12144167113925339	No Hit
GCGGCGACGGGTATCTGGCTTCCTCGGCCCCGGGATTCGGCGAAAGCTGC	15535	0.11238436654246149	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CACGTCT	62525	42.76677	14
GATCGGA	63960	42.535496	1
ACACGTC	63340	42.243484	13
CACACGT	63740	41.9974	12
TCGGAAG	65050	41.843307	3
ATCGGAA	65420	41.624577	2
CGGAAGA	65365	41.571537	4
GCACACG	64645	41.27591	11
CTCGTAT	66665	41.22866	44
AGCACAC	66005	40.481014	10
CGTCTGA	70920	40.443027	16
ACGTCTG	71510	40.369553	15
AGAGCAC	66165	40.347893	8
GAGCACA	66105	40.31207	9
TCTCGTA	66620	39.7538	43
ACATGTC	72905	39.282913	32
ATCTCGT	67360	39.26401	42
AGACGTC	2675	39.17112	13
CATGTCA	73360	39.049473	33
GTCACAT	73765	38.90637	29