RNAseq_TAM_Rep3.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	RNAseq_TAM_Rep3.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17116431
Sequences flagged as poor quality	0
Sequence length	50
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGC	700263	4.091174147227305	TruSeq Adapter, Index 1 (100% over 50bp)
CCACAAATTATGCAGTCGAGTTTCCCGCATTTGGGGAAATCGCAGGGGTC	57790	0.33762879656395656	No Hit
CACAAATTATGCAGTCGAGTTTCCCGCATTTGGGGAAATCGCAGGGGTCA	37326	0.21807116214823055	No Hit
GTCGAGTTTCCCGCATTTGGGGAAATCGCAGGGGTCAGCACATCCGGAGT	24647	0.1439961403168686	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA	24108	0.14084711935566474	No Hit
ACCACAAATTATGCAGTCGAGTTTCCCGCATTTGGGGAAATCGCAGGGGT	20615	0.12043982767201877	No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC	20273	0.11844174758160739	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	73975	43.528145	1
ATCGGAA	74410	43.278954	2
CGTCTGA	74820	43.12177	16
ACGTCTG	74870	43.11648	15
ACGATCT	74405	42.98812	37
ATCACGA	74660	42.904255	34
TCACGAT	74755	42.801445	35
TCGGAAG	75360	42.762444	3
GATCTCG	74940	42.736637	39
ATCTCGT	74800	42.719433	40
CGGAAGA	76155	42.637966	4
CACGATC	75150	42.569996	36
CGTATGC	75365	42.5157	44
CTCGTAT	75495	42.448757	42
CATCACG	75650	42.410046	33
GCACACG	76445	42.357635	11
TCGTATG	75995	42.16349	43
ACACGTC	77830	41.581264	13
CACACGT	78375	41.331417	12
ACATCAC	77765	41.315002	32