FastQCFastQC Report
Mon 6 Mar 2017
G151-M21-Index-7_CAGATC-_BCALRAANXX_L004_001.R1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameG151-M21-Index-7_CAGATC-_BCALRAANXX_L004_001.R1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28082907
Sequences flagged as poor quality0
Sequence length50
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA9300.012.05154841
CTCGTAT11100.011.68114542
TCGTATG10950.011.64023443
CGTATGC12550.09.98102544
CGTCTGA13550.09.74594216
ATCGGAA16550.07.9793212
GATCGGA15650.07.88183361
ACGTCTG18400.07.7750715
ATCTCGT16100.07.097952440
CATCTCG19250.06.164795439
ACACGTC21900.06.13041513
TCGGAAG23400.05.9258063
CGGAAGA27750.05.23570254
Produced by FastQC (version 0.11.2)