The name of the primary motif.

[ close ]

The logo of the primary motif.

Sections of the motif with a gray background have been trimmed and were not used for scanning.

[ close ]

The number of secondary motifs found that had significant spacings in the tested region.

[ close ]

The list of secondary motifs found that had significant spacings in the tested region.

[ close ]

The name of the sequence database.

[ close ]

The last modified date of the sequence database.

[ close ]

The number of sequences in the sequence database.

[ close ]

The number of sequences in the sequence database which were excluded because they were shorter than twice the margin plus the primary motif length.

[ close ]

The number of sequences in the sequence database which were excluded because no match to the primary motif could be found at a distance to the edges larger than the margin.

[ close ]

The number of sequences in the sequence database which were excluded because they were largly identical to other sequences when aligned on the primary motif site.

[ close ]

The number of sequences which were scanned with the secondary motifs.

[ close ]

The name of the motif database derived from the file name.

[ close ]

The date that the motif database was last modified.

[ close ]

The number of motifs loaded from the motif database. Some motifs may have been excluded.

[ close ]

The number of motifs with significant E-values whose significant spacings were not considered too similar to those of another motif.

[ close ]

The number of motifs that while having significant spacings were less signficant than another motif that matched most of the same sites.

[ close ]

The primary motif is used as the reference point for all spacing calculation.

Sections of the motif with a gray background have been trimmed and were not used for scanning.

[ close ]

The secondary motif occurs at the spacings relative to the primary shown in the histogram below.

Sections of the motif with a gray background have been trimmed and were not used for scanning.

[ close ]

The E-value is the lowest p-value of any spacing of the secondary motif times the number of secondary motifs. It estimates the expected number of random secondary motifs that would have the observed minimum p-value or less.

[ close ]

The histogram below shows the frequency of spacings from the primary motif to the secondary motif. Red bars indicate that a spacing has occured a statistically significant number of times.

Upstream
These are sequences where the secondary motif occurs before the primary motif.
Downstream
These are sequences where the secondary motif occurs after the primary motif.
Same Strand
These are sequences where the secondary motif is on the same strand as the primary motif.
Opposite Strand
These are sequences where the secondary motif is on the opposite strand to the primary motif.
[ close ]

The details of the significant spacings are shown in the four quadrants as they relate to the quadrants of the graph.

P-value
is the probability of the observed number (or more) sequences having the observed spacing between the primary and secondary motif, adjusted for multiple tests. The number of multiple tests is the number of spacing bins (the number of bars in the histogram) tested for significance.
Gap
is the space between the primary and secondary motifs where a value of zero means there is no space between them.
#
is the number of sequences where that spacing was observed.
[ close ]

The total number of sequences that have a match for both the primary motif and this secondary motif.

[ close ]

The motif database which this secondary motif came from.

[ close ]

The list of secondary motifs which have been identified as possibly similar to this motif because their most significant spacings overlaped with the most significant spacing of this motif. Check the boxes to show the possibly similar secondary motifs.

[ close ]

This shows the first secondary motif aligned with the current secondary motif by the most significant spacing.

Sections of the motif with a gray background have been trimmed and were not used for scanning.

[ close ]

For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net.

If you use SpaMo in your research please cite the following paper:
Tom Whitington, Martin C. Frith, James Johnson and Timothy L. Bailey, "Inferring transcription factor complexes from ChIP-seq data", Nucleic Acids Research, 39(15):e98, 2011. [full text]

Primary Motif  |  Sequence Database  |  Secondary Databases  |  Spacing Analysis  |  Program information

Primary Motif

 Next Top
Name 
 Preview 
 Significant Secondaries 
 List 
CYCCDCCC (DREME)
CCCCTCCC
88 UP00022 1 (Zfp740 primary),  UP00021 1 (Zfp281 primary),  MA0516.1 (SP2),  UP00043 2 (Bcl6b secondary),  MA0162.2 (EGR1),  UP00007 1 (Egr1 primary),  MA0130.1 (ZNF354C),  UP00099 2 (Ascl2 secondary),  MA0599.1 (KLF5),  MA0472.1 (EGR2),  UP00024 1 (Glis2 primary),  UP00047 1 (Zbtb7b primary),  MA0528.1 (ZNF263),  UP00000 2 (Smad3 secondary),  UP00033 2 (Zfp410 secondary),  MA0056.1 (MZF1 1-4),  CCABCTCC (DREME),  1 (MEME),  MA0122.1 (Nkx3-2),  UP00096 2 (Sox13 secondary)

Sequence Database

 Previous Next Top
Name 
 Last Modified 
 Loaded 
 Too Short 
 No Primary 
 Too Similar 
 Used 
Static Sex-independent Wed Jun 7 10:47:08 2017 67058 0 53531 2 13525

Secondary Databases

 Previous Next Top
Name 
 Last Modified 
 Number of Motifs 
 Motifs Significant 
 Motifs Redundant 
meme.xml Wed Jun 7 10:49:30 2017 3 1 0
dreme.xml Wed Jun 7 15:52:22 2017 62 9 0
JASPAR CORE 2014 vertebrates Wed Jun 7 10:46:42 2017 205 36 4
uniprobe mouse Wed Jun 7 10:46:42 2017 386 42 7

Spacings of "UP00022 1 (Zfp740 primary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00022 1 (Zfp740 primary) 
 E-value
CCCCTCCC
CCCCCCCCCCCACTTG
8.4e-106
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
6.3e-57 0 101  
6.9e-37 1 79  
4.3e-14 2 49  
0.0005 3 31  
0.01 4 28  
0.026 7 27  
0.0039 141 29  
P-value Gap #  
1.3e-108 0 150  
4.5e-16 1 52  
1.3e-08 2 40  
0.0014 4 30  
0.0014 5 30  
0.026 15 27  

Total sequences with primary and secondary motif 

6384

Motif Database 

uniprobe mouse

Spacings of "UP00021 1 (Zfp281 primary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00021 1 (Zfp281 primary) 
 E-value
CCCCTCCC
TCCCCCCCCCCCCCC
3.5e-44
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
5.4e-47 0 96  
1.9e-08 1 43  
3.9e-20 2 62  
6.4e-08 3 42  
5.5e-09 4 44  
0.0012 6 33  
0.0077 8 31  
0.019 137 30  
P-value Gap #  
5.8e-41 0 89  
1.9e-08 1 43  
1.3e-13 2 52  
1.3e-13 3 52  
0.0012 4 33  
0.00044 5 34  
0.0077 6 31  
6.5e-06 7 38  
0.0031 9 32  
5.6e-05 12 36  
6.5e-06 13 38  

Total sequences with primary and secondary motif 

7144

Motif Database 

uniprobe mouse

Spacings of "MA0516.1 (SP2)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0516.1 (SP2) 
 E-value
CCCCTCCC
GCCCCGCCCCCTCCC
2.1e-35
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
5.3e-13 0 57  
1e-14 1 60  
3.2e-38 2 94  
2.4e-06 3 44  
2.9e-07 4 46  
1.4e-13 5 58  
2.9e-07 7 46  
8.5e-07 8 45  
9.5e-10 9 51  
2.4e-06 10 44  
P-value Gap #  
9.5e-10 1 51  
1.4e-13 2 58  
1.4e-13 3 58  
0.00035 4 39  
9.6e-08 6 47  
0.0021 7 37  
3.1e-08 8 48  
0.00014 9 40  
6.9e-06 11 43  
0.00087 12 38  
0.00014 21 40  

Total sequences with primary and secondary motif 

8862

Motif Database 

JASPAR CORE 2014 vertebrates

Secondary motifs with similar spacings 
Similar Secondary: MA0079.3 (SP1)
Same Strand
Opposite Strand
P-value Gap #  
1.7e-12 0 55  
1.6e-18 1 65  
5.8e-34 2 87  
2.6e-06 3 43  
0.014 4 34  
9.1e-10 5 50  
5.6e-05 7 40  
2.7e-10 9 51  
0.00099 10 37  
0.0059 11 35  
P-value Gap #  
0.014 0 34  
9.1e-10 2 50  
9.1e-10 3 50  
5.1e-16 4 61  
9.8e-09 5 48  
0.031 6 33  
3e-09 7 49  
0.031 8 33  
0.0024 9 36  
0.014 10 34  
2.6e-06 12 43  
2.1e-05 13 41  
0.031 22 33  

Total sequences with primary and secondary motif 

8617

Alignment by most significant spacings 

Best Similar
Secondary
GCCCCGCCCCCTCCC
This Similar
Secondary
GCCCCGCCCCC
Similar Secondary: UP00002 1 (Sp4 primary)
Same Strand
Opposite Strand
P-value Gap #  
9e-08 0 40  
1.1e-27 1 70  
9e-08 2 40  
2e-09 3 43  
3.2e-06 4 37  
2e-09 5 43  
3.2e-06 6 37  
0.0019 8 31  
0.013 11 29  
0.032 14 28  
P-value Gap #  
9.9e-07 0 38  
5.7e-13 3 49  
2.3e-12 4 48  
7.3e-09 5 42  
0.00072 7 32  
0.032 8 28  
3.7e-11 10 46  
0.0019 11 31  
0.032 12 28  
0.0051 13 30  
3e-07 14 39  

Total sequences with primary and secondary motif 

6786

Alignment by most significant spacings 

Best Similar
Secondary
 GCCCCGCCCCCTCCC
This Similar
Secondary
GGTCCCGCCCCCTTCTC

Spacings of "UP00043 2 (Bcl6b secondary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00043 2 (Bcl6b secondary) 
 E-value
CCCCTCCC
ATCCCCGCCCCTAAAA
1.9e-31
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
5.4e-18 0 68  
1.7e-28 1 84  
8.8e-13 2 59  
3.3e-07 3 48  
1.9e-05 5 44  
0.00013 6 42  
0.048 8 35  
2.6e-06 10 46  
0.048 12 35  
0.0045 20 38  
P-value Gap #  
2.9e-34 0 92  
1.1e-11 1 57  
0.00013 2 42  
1.2e-08 4 51  
0.0045 5 38  
3.7e-08 6 50  
0.023 9 36  
0.048 14 35  

Total sequences with primary and secondary motif 

9730

Motif Database 

uniprobe mouse

Spacings of "MA0162.2 (EGR1)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0162.2 (EGR1) 
 E-value
CCCCTCCC
CCCCCGCCCCCGCC
4.2e-30
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
6.4e-33 0 82  
0.0022 1 34  
0.0022 2 34  
0.013 3 32  
0.00012 4 37  
1.7e-06 5 41  
4.3e-05 6 38  
0.00012 7 37  
0.0022 8 34  
0.03 10 31  
4.3e-05 15 38  
P-value Gap #  
0.03 1 31  
1.8e-07 2 43  
4e-14 3 55  
5.7e-08 4 44  
0.03 5 31  
0.0022 7 34  
0.0054 10 33  
0.03 12 31  
4.3e-05 13 38  

Total sequences with primary and secondary motif 

7754

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "UP00007 1 (Egr1 primary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00007 1 (Egr1 primary) 
 E-value
CCCCTCCC
TCCGCCCCCGCATT
6.9e-28
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
1.1e-08 0 39  
0.00018 1 31  
0.0042 2 28  
0.00053 3 30  
5.8e-06 6 34  
P-value Gap #  
1.1e-30 0 70  
3e-14 1 48  
0.00018 3 31  
0.011 4 27  
7.5e-10 5 41  
0.00018 6 31  
0.029 7 26  
0.0042 10 28  
5.9e-05 11 32  
0.029 12 26  
0.0015 14 29  

Total sequences with primary and secondary motif 

5992

Motif Database 

uniprobe mouse

Spacings of "MA0130.1 (ZNF354C)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0130.1 (ZNF354C) 
 E-value
CCCCTCCC
ATCCAC
3.8e-25
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
5.7e-28 0 85  
P-value Gap #  
0.024 4 37  
0.024 8 37  

Total sequences with primary and secondary motif 

10283

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "UP00099 2 (Ascl2 secondary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00099 2 (Ascl2 secondary) 
 E-value
CCCCTCCC
CTATCCCCGCCCTATT
3.1e-22
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
2.6e-15 2 60  
1.2e-21 3 70  
4.7e-25 4 75  
0.0011 5 37  
0.00017 7 39  
0.015 10 34  
0.034 11 33  
P-value Gap #  
0.00044 0 38  
6.5e-16 2 61  
4.9e-19 3 66  
1.1e-23 4 73  
3.9e-17 5 63  
1e-06 6 44  
8.6e-06 7 42  
0.015 8 34  
3.5e-07 9 45  
2.4e-05 10 41  
0.015 13 34  
0.0027 22 36  

Total sequences with primary and secondary motif 

8782

Motif Database 

uniprobe mouse

Secondary motifs with similar spacings 
Similar Secondary: UP00093 1 (Klf7 primary)
Same Strand
Opposite Strand
P-value Gap #  
1.6e-12 1 52  
1e-13 2 54  
3.6e-16 3 58  
0.0017 6 34  
0.011 9 32  
0.0044 10 33  
1.2e-05 11 39  
P-value Gap #  
1e-13 1 54  
2.6e-14 2 55  
6.3e-15 3 56  
0.0044 4 33  
0.0044 5 33  
0.00067 6 35  
4.2e-07 8 42  
3.3e-05 9 38  
0.0044 10 33  
0.011 12 32  
3.3e-05 21 38  

Total sequences with primary and secondary motif 

7779

Alignment by most significant spacings 

Best Similar
Secondary
CTATCCCCGCCCTATT
This Similar
Secondary
TCGACCCCGCCCCTAT

Spacings of "MA0599.1 (KLF5)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0599.1 (KLF5) 
 E-value
CCCCTCCC
GCCCCGCCCC
6e-22
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
2.5e-19 1 65  
9.2e-25 2 73  
1.1e-22 3 70  
0.015 4 33  
9.4e-08 6 45  
7.6e-06 8 41  
0.00016 9 38  
2.2e-05 10 40  
5.9e-05 11 39  
P-value Gap #  
9.4e-08 1 45  
9.4e-08 2 45  
3.7e-16 3 60  
0.00016 4 38  
0.035 5 32  
3e-08 6 46  
9.4e-08 8 45  
0.0011 9 36  
2.6e-06 11 42  
2.6e-06 12 42  
5.9e-05 13 39  

Total sequences with primary and secondary motif 

8299

Motif Database 

JASPAR CORE 2014 vertebrates

Secondary motifs with similar spacings 
Similar Secondary: MA0039.2 (Klf4)
Same Strand
Opposite Strand
P-value Gap #  
7.9e-12 1 52  
6.8e-18 2 62  
3.6e-14 3 56  
0.023 6 32  
0.00064 7 36  
0.0016 8 35  
0.0098 9 33  
0.0041 10 34  
0.00064 11 36  
P-value Gap #  
3.6e-10 1 49  
1.4e-08 2 46  
3.6e-10 3 49  
0.00025 4 37  
0.00064 6 36  
1.2e-05 8 40  
0.00064 9 36  
0.00064 10 36  

Total sequences with primary and secondary motif 

8107

Alignment by most significant spacings 

Best Similar
Secondary
GGGGCGGGGC
This Similar
Secondary
TGGGTGGGGC

Spacings of "MA0472.1 (EGR2)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0472.1 (EGR2) 
 E-value
CCCCTCCC
CCCCCGCCCACGCAC
2.3e-21
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
1e-13 0 49  
0.037 1 27  
0.0022 5 30  
0.0008 6 31  
0.0058 7 29  
0.0022 15 30  
P-value Gap #  
3.5e-24 0 64  
0.0008 1 31  
1e-05 4 35  
0.015 5 28  
0.0008 9 31  
3.2e-05 14 34  
0.0058 15 29  

Total sequences with primary and secondary motif 

6488

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "UP00024 1 (Glis2 primary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00024 1 (Glis2 primary) 
 E-value
CCCCTCCC
TATCGACCCCCCACAG
5.7e-20
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
2.3e-07 0 33  
0.0013 2 26  
P-value Gap #  
4e-18 0 49  
8.7e-23 1 55  
8.5e-10 2 37  
0.00041 3 27  
0.011 12 24  
P-value Gap #  
0.03 75 23  

Total sequences with primary and secondary motif 

4974

Motif Database 

uniprobe mouse

Spacings of "UP00047 1 (Zbtb7b primary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00047 1 (Zbtb7b primary) 
 E-value
CCCCTCCC
AAGCCCCCCAAAAAT
1.1e-19
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
3.9e-11 0 41  
3.9e-11 1 41  
0.0022 2 27  
P-value Gap #  
4.3e-08 0 36  
1.6e-16 1 49  
1.7e-22 2 57  
1.6e-07 3 35  
7.2e-06 4 32  
0.00075 5 28  
0.00075 7 28  
0.017 8 25  
0.044 18 24  

Total sequences with primary and secondary motif 

5527

Motif Database 

uniprobe mouse

Spacings of "MA0528.1 (ZNF263)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0528.1 (ZNF263) 
 E-value
CCCCTCCC
GGAGGAGGAGGGGGAGGAGGA
1.7e-18
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
5.5e-15 0 59  
7.1e-09 1 48  
2.6e-21 2 69  
1.9e-10 3 51  
2.3e-08 5 47  
0.00031 6 38  
4.3e-05 8 40  
0.0047 129 35  
P-value Gap #  
1.4e-15 0 60  
1.9e-10 1 51  
1.6e-11 2 53  
1.9e-10 3 51  
0.011 5 34  

Total sequences with primary and secondary motif 

7890

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "UP00000 2 (Smad3 secondary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00000 2 (Smad3 secondary) 
 E-value
CCCCTCCC
TACGCCCCGCCACTCTG
9.5e-18
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.03 1 31  
1.7e-08 2 45  
4.2e-05 3 38  
5.5e-08 4 44  
0.0021 9 34  
0.03 11 31  
P-value Gap #  
1.4e-20 2 65  
5.5e-08 3 44  
6e-13 4 53  
0.00083 5 35  
0.00083 7 35  
5.5e-07 9 42  
4.2e-05 10 38  
0.03 14 31  
0.03 19 31  

Total sequences with primary and secondary motif 

7961

Motif Database 

uniprobe mouse

Spacings of "UP00033 2 (Zfp410 secondary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00033 2 (Zfp410 secondary) 
 E-value
CCCCTCCC
TCACCCCGCCCCTAATT
8.8e-15
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
4.5e-14 1 61  
1.3e-17 2 67  
7.2e-12 3 57  
2.5e-11 4 56  
0.041 5 35  
7.2e-12 6 57  
0.0001 7 42  
0.0001 8 42  
0.041 9 35  
0.0001 10 42  
0.0037 11 38  
0.0084 14 37  
P-value Gap #  
2.1e-12 0 58  
2.5e-11 1 56  
0.00026 2 41  
7e-07 4 47  
0.0001 5 42  
0.00064 6 40  
0.041 7 35  
0.0084 9 37  
0.0084 10 37  
8.9e-09 11 51  
0.041 12 35  
0.00064 15 40  
0.0037 23 38  

Total sequences with primary and secondary motif 

9704

Motif Database 

uniprobe mouse

Spacings of "MA0056.1 (MZF1 1-4)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0056.1 (MZF1 1-4) 
 E-value
CCCCTCCC
TGGGGA
4.3e-13
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.0028 1 36  
6.5e-16 2 61  
1.5e-13 3 57  
0.035 4 33  
8.7e-06 6 42  
0.035 9 33  
P-value Gap #  
0.035 1 33  
1.2e-08 2 48  
0.0028 3 36  
0.015 5 34  

Total sequences with primary and secondary motif 

8962

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "CCABCTCC (DREME)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: CCABCTCC (DREME) 
 E-value
CCCCTCCC
CCACCTCC
1.5e-12
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.041 5 12  
P-value Gap #  
2.2e-15 0 28  

Total sequences with primary and secondary motif 

1723

Motif Database 

dreme.xml

Spacings of "1 (MEME)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: 1 (MEME) 
 E-value
CCCCTCCC
CCCGCGCCCCCTCCCGCCCCGCCTCCGCC
6.9e-12
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
2.8e-05 1 36  
3.1e-07 2 40  
0.00063 3 33  
3.1e-06 4 38  
0.00063 5 33  
0.026 8 29  
0.011 10 30  
P-value Gap #  
0.0017 0 32  
2.3e-09 1 44  
3.1e-06 2 38  
1e-14 3 53  
9.4e-08 4 41  
0.0017 5 32  
0.0017 6 32  
8.2e-05 8 35  
0.0017 11 32  
0.026 15 29  

Total sequences with primary and secondary motif 

6169

Motif Database 

meme.xml

Spacings of "MA0122.1 (Nkx3-2)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0122.1 (Nkx3-2) 
 E-value
CCCCTCCC
TTAAGTGGA
1.1e-10
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
1.7e-13 0 57  

Total sequences with primary and secondary motif 

8860

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "UP00096 2 (Sox13 secondary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00096 2 (Sox13 secondary) 
 E-value
CCCCTCCC
GTATTGGGTGGGTATTT
1.4e-10
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.026 0 35  
4e-09 1 51  
1.2e-08 2 50  
2.2e-13 3 59  
P-value Gap #  
2.1e-05 1 43  
1.1e-07 2 48  
1.2e-09 3 52  
5.5e-05 11 42  

Total sequences with primary and secondary motif 

9290

Motif Database 

uniprobe mouse

Spacings of "UP00007 2 (Egr1 secondary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00007 2 (Egr1 secondary) 
 E-value
CCCCTCCC
TGCGGAGTGGGACTGG
2e-09
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
3e-12 0 53  
5.9e-07 1 43  
1.5e-05 2 40  
1.8e-06 3 42  
3e-12 4 53  
0.002 5 35  
0.002 8 35  
0.0049 9 34  
P-value Gap #  
5.8e-09 1 47  
6.1e-08 2 45  
0.027 4 32  
0.012 11 33  

Total sequences with primary and secondary motif 

8240

Motif Database 

uniprobe mouse

Spacings of "UP00070 1 (Gcm1 primary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00070 1 (Gcm1 primary) 
 E-value
CCCCTCCC
TCGTACCCGCATCATT
7.3e-09
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
1.1e-11 0 33  
P-value Gap #  
0.0033 1 20  
4.2e-08 2 28  

Total sequences with primary and secondary motif 

3465

Motif Database 

uniprobe mouse

Spacings of "VGGAAR (DREME)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: VGGAAR (DREME) 
 E-value
CCCCTCCC
AGGAAG
4.1e-07
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.018 2 39  
2.9e-06 7 49  
0.018 9 39  
P-value Gap #  
0.0017 0 42  
6.3e-10 1 57  

Total sequences with primary and secondary motif 

10930

Motif Database 

dreme.xml

Spacings of "MA0155.1 (INSM1)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0155.1 (INSM1) 
 E-value
CCCCTCCC
TGTCAGGGGGCG
6.4e-06
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.021 19 17  
P-value Gap #  
5.6e-06 0 23  
9.8e-09 1 27  

Total sequences with primary and secondary motif 

2938

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "MA0057.1 (MZF1 5-13)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0057.1 (MZF1 5-13) 
 E-value
CCCCTCCC
GGAGGGGGAA
1.3e-05
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
6.3e-08 0 46  
0.0018 1 36  
0.00028 2 38  
5.1e-06 3 42  
1.7e-06 4 43  
0.00072 5 37  
P-value Gap #  
0.00028 0 38  
6.3e-08 1 46  
2e-08 2 47  
5.1e-06 3 42  
0.00028 4 38  

Total sequences with primary and secondary motif 

8614

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "UP00408 2 (Gabpa secondary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00408 2 (Gabpa secondary) 
 E-value
CCCCTCCC
CCGTCTTCCCCCTCAC
2.6e-05
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.028 1 26  
3.9e-08 2 38  
0.0041 4 28  
0.011 5 27  
5.8e-05 7 32  
P-value Gap #  
0.0015 11 29  

Total sequences with primary and secondary motif 

5984

Motif Database 

uniprobe mouse

Spacings of "CCCGCCC (DREME)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: CCCGCCC (DREME) 
 E-value
CCCCTCCC
CCCGCCC
2.7e-05
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
2.1e-05 2 22  
0.00037 3 20  
0.0014 4 19  
4.7e-06 7 23  
0.019 10 17  
P-value Gap #  
4.1e-08 3 26  
0.0014 4 19  
2.1e-07 5 25  
1e-06 10 24  
0.0014 11 19  
0.0014 14 19  

Total sequences with primary and secondary motif 

3007

Motif Database 

dreme.xml

Spacings of "MA0493.1 (Klf1)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0493.1 (Klf1) 
 E-value
CCCCTCCC
GGCCACACCCA
0.00016
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
2.4e-07 1 38  
2.4e-07 2 38  
8.5e-06 3 35  
0.032 24 27  
P-value Gap #  
8.1e-07 1 37  
8e-05 2 33  
2.7e-05 3 34  
0.0019 4 30  
0.013 6 28  
2.7e-06 8 36  
0.032 12 27  
0.0019 21 30  
0.032 51 27  

Total sequences with primary and secondary motif 

6434

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "UP00085 1 (Sfpi1 primary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00085 1 (Sfpi1 primary) 
 E-value
CCCCTCCC
TTAAGAGGAAGTTA
0.00025
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
3.9e-07 0 41  
0.028 29 30  

Total sequences with primary and secondary motif 

7452

Motif Database 

uniprobe mouse

Spacings of "UP00002 2 (Sp4 secondary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00002 2 (Sp4 secondary) 
 E-value
CCCCTCCC
CAAAGGCGTGGCCAG
0.00041
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
2.1e-05 1 34  
0.011 2 28  
0.011 3 28  
6.5e-05 9 33  
0.011 24 28  
P-value Gap #  
0.028 3 27  
6.3e-07 8 37  
0.0042 10 29  
0.0042 21 29  
0.028 51 27  

Total sequences with primary and secondary motif 

6374

Motif Database 

uniprobe mouse

Spacings of "UP00015 1 (Ehf primary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00015 1 (Ehf primary) 
 E-value
CCCCTCCC
AGGACCCGGAAGTAA
0.00056
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.0059 6 28  
P-value Gap #  
8.5e-07 0 36  
0.039 138 26  

Total sequences with primary and secondary motif 

6151

Motif Database 

uniprobe mouse

Spacings of "MA0073.1 (RREB1)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0073.1 (RREB1) 
 E-value
CCCCTCCC
CCCCAAACCACCCCCCCCCC
0.00075
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
1.1e-06 1 18  
0.00024 2 15  
0.0013 5 14  
0.028 6 12  

Total sequences with primary and secondary motif 

1540

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "CAGGMTG (DREME)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: CAGGMTG (DREME) 
 E-value
CCCCTCCC
CAGGCTG
0.0014
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
2.2e-06 1 23  

Total sequences with primary and secondary motif 

2885

Motif Database 

dreme.xml

Spacings of "MA0156.1 (FEV)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0156.1 (FEV) 
 E-value
CCCCTCCC
CAGGAAAT
0.0022
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
3.4e-06 0 28  

Total sequences with primary and secondary motif 

4247

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "MA0471.1 (E2F6)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0471.1 (E2F6) 
 E-value
CCCCTCCC
GGGCGGGAAGG
0.0025
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
1.3e-05 1 30  
0.00015 2 28  
3.8e-06 4 31  
0.00048 7 27  
P-value Gap #  
0.00048 2 27  
0.00015 3 28  
0.0015 4 26  
0.0044 6 25  
0.034 10 23  

Total sequences with primary and secondary motif 

5051

Motif Database 

JASPAR CORE 2014 vertebrates

Secondary motifs with similar spacings 
Similar Secondary: MA0469.1 (E2F3)
Same Strand
Opposite Strand
P-value Gap #  
6.9e-05 0 25  
P-value Gap #  
0.00025 3 24  
0.027 4 20  

Total sequences with primary and secondary motif 

3904

Alignment by most significant spacings 

Best Similar
Secondary
CCTTCCCGCCC
This Similar
Secondary
  CTCCCGCCCCCACTC

Spacings of "UP00070 2 (Gcm1 secondary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00070 2 (Gcm1 secondary) 
 E-value
CCCCTCCC
TGCGCATAGGGGAGGAG
0.003
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
4.6e-06 0 25  
P-value Gap #  
0.012 29 19  

Total sequences with primary and secondary motif 

3426

Motif Database 

uniprobe mouse

Spacings of "UP00088 2 (Plagl1 secondary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00088 2 (Plagl1 secondary) 
 E-value
CCCCTCCC
GCTGGGGGGTACCCCTT
0.003
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.0077 0 16  
4.6e-06 1 21  

Total sequences with primary and secondary motif 

2462

Motif Database 

uniprobe mouse

Spacings of "CYGCCDCC (DREME)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: CYGCCDCC (DREME) 
 E-value
CCCCTCCC
CTGCCGCC
0.0039
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
9.5e-05 2 23  
0.046 17 18  
P-value Gap #  
5.9e-06 5 25  

Total sequences with primary and secondary motif 

3542

Motif Database 

dreme.xml

Spacings of "MA0597.1 (THAP1)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0597.1 (THAP1) 
 E-value
CCCCTCCC
CTGCCCGCA
0.0043
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.034 1 38  
0.016 11 39  
P-value Gap #  
6.5e-06 0 48  
0.0074 1 40  
0.0033 30 41  

Total sequences with primary and secondary motif 

10652

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "MA0133.1 (BRCA1)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0133.1 (BRCA1) 
 E-value
CCCCTCCC
ACAACAC
0.0045
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
6.9e-06 1 34  

Total sequences with primary and secondary motif 

6238

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "MA0475.1 (FLI1)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0475.1 (FLI1) 
 E-value
CCCCTCCC
ACAGGAAGTGG
0.0085
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.017 3 28  
0.00096 5 31  
1.3e-05 7 35  

Total sequences with primary and secondary motif 

6503

Motif Database 

JASPAR CORE 2014 vertebrates

Secondary motifs with similar spacings 
Similar Secondary: MA0098.2 (Ets1)
Same Strand
Opposite Strand
P-value Gap #  
0.017 2 28  
0.00094 5 31  
0.00011 7 33  
P-value Gap #  
0.017 45 28  

Total sequences with primary and secondary motif 

6495

Alignment by most significant spacings 

Best Similar
Secondary
 CCACTTCCTGT
This Similar
Secondary
CCCACTTCCTGTCTC

Spacings of "UP00077 2 (Srf secondary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00077 2 (Srf secondary) 
 E-value
CCCCTCCC
GTTAAAAAAAAAAATTT
0.024
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
3.6e-05 141 28  

Total sequences with primary and secondary motif 

4732

Motif Database 

uniprobe mouse

Spacings of "UP00067 1 (Lef1 primary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00067 1 (Lef1 primary) 
 E-value
CCCCTCCC
AATCCCTTTGATCTATC
0.029
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
4.4e-05 37 20  

Total sequences with primary and secondary motif 

2551

Motif Database 

uniprobe mouse

Secondary motifs with similar spacings 
Similar Secondary: UP00083 1 (Tcf7l2 primary)
Same Strand
Opposite Strand
P-value Gap #  
8.1e-05 37 22  

Total sequences with primary and secondary motif 

3171

Alignment by most significant spacings 

Best Similar
Secondary
AATCCCTTTGATCTATC
This Similar
Secondary
ATTTCCTTTGATCTATA
Similar Secondary: UP00058 1 (Tcf3 primary)
Same Strand
Opposite Strand
P-value Gap #  
0.0016 37 23  

Total sequences with primary and secondary motif 

4117

Alignment by most significant spacings 

Best Similar
Secondary
GATAGATCAAAGGGATT
This Similar
Secondary
TATAGATCAAAGGAAAA
Similar Secondary: UP00054 1 (Tcf7 primary)
Same Strand
Opposite Strand
P-value Gap #  
0.045 21 21  
P-value Gap #  
0.0054 37 23  

Total sequences with primary and secondary motif 

4440

Alignment by most significant spacings 

Best Similar
Secondary
GATAGATCAAAGGGATT
This Similar
Secondary
TATAGATCAAAGGAAAA

Spacings of "UP00005 1 (Tcfap2a primary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00005 1 (Tcfap2a primary) 
 E-value
CCCCTCCC
ATTCCCTGAGGGGAA
0.038
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
5.8e-05 16 36  

Total sequences with primary and secondary motif 

7251

Motif Database 

uniprobe mouse

Spacings of "UP00035 2 (Hic1 secondary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00035 2 (Hic1 secondary) 
 E-value
CCCCTCCC
GGGTGTGCCCAAAAGG
0.045
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
6.8e-05 1 29  

Total sequences with primary and secondary motif 

5220

Motif Database 

uniprobe mouse

Spacings of "MA0136.1 (ELF5)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0136.1 (ELF5) 
 E-value
CCCCTCCC
TACTTCCTT
0.052
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.014 7 38  
P-value Gap #  
7.9e-05 0 44  

Total sequences with primary and secondary motif 

10318

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "CCACRYCC (DREME)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: CCACRYCC (DREME) 
 E-value
CCCCTCCC
CCACACCC
0.053
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.012 0 12  
8.1e-05 52 15  

Total sequences with primary and secondary motif 

1519

Motif Database 

dreme.xml

Spacings of "UP00018 1 (Irf4 primary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00018 1 (Irf4 primary) 
 E-value
CCCCTCCC
CGTATCGAAACCAAA
0.068
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.0001 4 17  

Total sequences with primary and secondary motif 

1992

Motif Database 

uniprobe mouse

Spacings of "GGGMGGGA (DREME)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: GGGMGGGA (DREME) 
 E-value
CCCCTCCC
GGGAGGGA
0.075
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.00011 2 16  
0.0006 4 15  
P-value Gap #  
0.0006 4 15  
0.00011 12 16  

Total sequences with primary and secondary motif 

1785

Motif Database 

dreme.xml

Spacings of "UP00102 1 (Zic1 primary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00102 1 (Zic1 primary) 
 E-value
CCCCTCCC
CACCCCCGGGGGGG
0.095
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.00015 0 29  
0.0014 3 27  

Total sequences with primary and secondary motif 

5275

Motif Database 

uniprobe mouse

Spacings of "MA0470.1 (E2F4)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0470.1 (E2F4) 
 E-value
CCCCTCCC
GGGCGGGAAGG
0.15
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.0027 1 22  
0.00023 3 24  
P-value Gap #  
0.00023 2 24  
0.026 3 20  

Total sequences with primary and secondary motif 

3993

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "MA0474.1 (Erg)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0474.1 (Erg) 
 E-value
CCCCTCCC
ACAGGAAGTGG
0.19
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.00029 5 32  
0.00081 7 31  

Total sequences with primary and secondary motif 

6492

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "MA0075.1 (Prrx2)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0075.1 (Prrx2) 
 E-value
CCCCTCCC
AATTA
0.2
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.0003 130 17  

Total sequences with primary and secondary motif 

2208

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "MA0080.3 (Spi1)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0080.3 (Spi1) 
 E-value
CCCCTCCC
AAAAAGAGGAAGTGA
0.23
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.019 0 27  
0.019 28 27  
P-value Gap #  
0.00035 1 31  

Total sequences with primary and secondary motif 

6142

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "CSTCCTCC (DREME)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: CSTCCTCC (DREME) 
 E-value
CCCCTCCC
CCTCCTCC
0.29
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.0024 2 13  
0.00045 3 14  
0.0024 5 13  

Total sequences with primary and secondary motif 

1514

Motif Database 

dreme.xml

Spacings of "MA0153.1 (HNF1B)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0153.1 (HNF1B) 
 E-value
CCCCTCCC
TTAATATTTAAC
0.35
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.00053 22 10  

Total sequences with primary and secondary motif 

710

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "UP00028 2 (Tcfap2e secondary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00028 2 (Tcfap2e secondary) 
 E-value
CCCCTCCC
TACTGGAAAAAAAA
0.4
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.00061 140 28  

Total sequences with primary and secondary motif 

5431

Motif Database 

uniprobe mouse

Spacings of "UP00208 1 (Obox5 2284.1)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00208 1 (Obox5 2284.1) 
 E-value
CCCCTCCC
TAGAGGGATTAAATTTC
0.43
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.00066 14 12  

Total sequences with primary and secondary motif 

1115

Motif Database 

uniprobe mouse

Secondary motifs with similar spacings 
Similar Secondary: UP00030 2 (Sox11 secondary)
Same Strand
Opposite Strand
P-value Gap #  
0.0044 15 17  

Total sequences with primary and secondary motif 

2673

Alignment by most significant spacings 

Best Similar
Secondary
TAGAGGGATTAAATTTC
This Similar
Secondary
    AAAATTGTTATGAA
Similar Secondary: UP00018 2 (Irf4 secondary)
Same Strand
Opposite Strand
P-value Gap #  
0.009 18 25  

Total sequences with primary and secondary motif 

5314

Alignment by most significant spacings 

Best Similar
Secondary
GAAATTTAATCCCTCTA
This Similar
Secondary
    AGTATTCTCGGTTGC

Spacings of "UP00172 1 (Prop1 3949.1)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00172 1 (Prop1 3949.1) 
 E-value
CCCCTCCC
CGAATTAATTAAGAAAC
0.55
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.00083 133 11  

Total sequences with primary and secondary motif 

924

Motif Database 

uniprobe mouse

Spacings of "CCBGCCTC (DREME)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: CCBGCCTC (DREME) 
 E-value
CCCCTCCC
CCTGCCTC
0.56
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.016 2 14  
P-value Gap #  
0.00086 4 16  

Total sequences with primary and secondary motif 

2087

Motif Database 

dreme.xml

Spacings of "UP00407 2 (Elf3 secondary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00407 2 (Elf3 secondary) 
 E-value
CCCCTCCC
GTTCAAAAAAAAAATTC
0.6
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.0029 134 23  
0.00091 135 24  

Total sequences with primary and secondary motif 

4156

Motif Database 

uniprobe mouse

Spacings of "UP00048 2 (Rara secondary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00048 2 (Rara secondary) 
 E-value
CCCCTCCC
AGAGCGGGGTCAAGTA
0.66
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.001 1 29  

Total sequences with primary and secondary motif 

5862

Motif Database 

uniprobe mouse

Spacings of "MA0115.1 (NR1H2::RXRA)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0115.1 (NR1H2::RXRA) 
 E-value
CCCCTCCC
AAAGGTCAAAGGTCAAC
0.75
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.0012 34 5  

Total sequences with primary and secondary motif 

108

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "MA0145.2 (Tcfcp2l1)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0145.2 (Tcfcp2l1) 
 E-value
CCCCTCCC
CCAGTTCAAACCAG
0.86
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.0013 0 31  

Total sequences with primary and secondary motif 

6470

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "MA0598.1 (EHF)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0598.1 (EHF) 
 E-value
CCCCTCCC
CCTTCCTG
1.1
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.0017 0 16  

Total sequences with primary and secondary motif 

2204

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "UP00021 2 (Zfp281 secondary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00021 2 (Zfp281 secondary) 
 E-value
CCCCTCCC
AGGAGACCCCCAATTTG
1.2
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.0018 0 19  

Total sequences with primary and secondary motif 

2920

Motif Database 

uniprobe mouse

Spacings of "UP00255 1 (Dbx1 3486.1)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00255 1 (Dbx1 3486.1) 
 E-value
CCCCTCCC
TAATTAATTAATAATTA
1.6
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.0025 136 19  

Total sequences with primary and secondary motif 

3026

Motif Database 

uniprobe mouse

Spacings of "MA0109.1 (Hltf)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0109.1 (Hltf) 
 E-value
CCCCTCCC
AACCTTATAT
2
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.003 0 39  
0.033 103 36  

Total sequences with primary and secondary motif 

10062

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "MA0068.1 (Pax4)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0068.1 (Pax4) 
 E-value
CCCCTCCC
GAAAAATTTCCCATACTCCACTCCCCCCCC
2
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.0031 0 24  

Total sequences with primary and secondary motif 

4011

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "UP00029 1 (Tbp primary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00029 1 (Tbp primary) 
 E-value
CCCCTCCC
TCTTTATATATAAATA
2.4
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.0036 140 15  

Total sequences with primary and secondary motif 

2048

Motif Database 

uniprobe mouse

Spacings of "UP00057 1 (Zic2 primary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00057 1 (Zic2 primary) 
 E-value
CCCCTCCC
CCCCCCCGGGGGGGT
2.4
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.0037 0 24  

Total sequences with primary and secondary motif 

4585

Motif Database 

uniprobe mouse

Spacings of "UP00093 2 (Klf7 secondary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00093 2 (Klf7 secondary) 
 E-value
CCCCTCCC
AAGCATACGCCCAACTT
3
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.0045 1 18  

Total sequences with primary and secondary motif 

2950

Motif Database 

uniprobe mouse

Spacings of "UP00056 1 (Rfx4 primary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00056 1 (Rfx4 primary) 
 E-value
CCCCTCCC
TACCATAGCAACGGT
3.1
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.0047 7 14  

Total sequences with primary and secondary motif 

1828

Motif Database 

uniprobe mouse

Spacings of "MA0504.1 (NR2C2)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0504.1 (NR2C2) 
 E-value
CCCCTCCC
AGGGGTCAGAGGTCA
4.3
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.019 1 21  
0.0065 5 22  
0.019 11 21  

Total sequences with primary and secondary motif 

4094

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "MA0024.2 (E2F1)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0024.2 (E2F1) 
 E-value
CCCCTCCC
CGGGCGGGAGG
5
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.0077 0 16  

Total sequences with primary and secondary motif 

2460

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "MA0003.2 (TFAP2A)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0003.2 (TFAP2A) 
 E-value
CCCCTCCC
CATTGCCTCAGGGCA
5.1
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.0078 1 28  

Total sequences with primary and secondary motif 

6206

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "UP00094 2 (Zfp128 secondary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00094 2 (Zfp128 secondary) 
 E-value
CCCCTCCC
TGTATATATATACC
5.3
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.0081 135 14  

Total sequences with primary and secondary motif 

1920

Motif Database 

uniprobe mouse

Spacings of "UP00082 2 (Zfp187 secondary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00082 2 (Zfp187 secondary) 
 E-value
CCCCTCCC
GAGCCCTTGTCCCTTG
6.6
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.01 2 29  
0.01 68 29  

Total sequences with primary and secondary motif 

6598

Motif Database 

uniprobe mouse

Spacings of "UP00006 1 (Zic3 primary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00006 1 (Zic3 primary) 
 E-value
CCCCTCCC
CCCCCCCGGGGGGGT
6.9
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.01 0 26  
P-value Gap #  
0.01 0 26  

Total sequences with primary and secondary motif 

5591

Motif Database 

uniprobe mouse

Spacings of "UP00052 1 (Osr2 primary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00052 1 (Osr2 primary) 
 E-value
CCCCTCCC
ATGTACAGTAGCAAAG
7
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.011 29 16  

Total sequences with primary and secondary motif 

2563

Motif Database 

uniprobe mouse

Spacings of "UP00071 1 (Sox21 primary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00071 1 (Sox21 primary) 
 E-value
CCCCTCCC
TTTAATTATAATTAAG
7.1
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.011 132 14  

Total sequences with primary and secondary motif 

1999

Motif Database 

uniprobe mouse

Spacings of "MA0492.1 (JUND)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0492.1 (JUND) 
 E-value
CCCCTCCC
AAAGATGATGTCATC
7.2
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.011 18 11  

Total sequences with primary and secondary motif 

1235

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "MA0502.1 (NFYB)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0502.1 (NFYB) 
 E-value
CCCCTCCC
AAATGGACCAATCAG
7.3
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.011 12 14  

Total sequences with primary and secondary motif 

1991

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "MA0596.1 (SREBF2)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0596.1 (SREBF2) 
 E-value
CCCCTCCC
ATGGGGTGAT
7.9
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.045 0 14  
P-value Gap #  
0.012 11 15  

Total sequences with primary and secondary motif 

2277

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "MA0065.2 (PPARG::RXRA)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0065.2 (PPARG::RXRA) 
 E-value
CCCCTCCC
GTAGGGCAAAGGTCA
8.1
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.012 5 33  

Total sequences with primary and secondary motif 

7982

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "MA0517.1 (STAT2::STAT1)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: MA0517.1 (STAT2::STAT1) 
 E-value
CCCCTCCC
TCAGTTTCATTTTCC
8.3
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.013 106 16  

Total sequences with primary and secondary motif 

2484

Motif Database 

JASPAR CORE 2014 vertebrates

Spacings of "UP00197 1 (Hoxc9 2367.2)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00197 1 (Hoxc9 2367.2) 
 E-value
CCCCTCCC
GGAGGTCATTAATTAT
9.1
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.014 44 15  

Total sequences with primary and secondary motif 

2319

Motif Database 

uniprobe mouse

Spacings of "UP00028 1 (Tcfap2e primary)" relative to "CYCCDCCC (DREME)"

 Previous Next Top
Primary: CYCCDCCC (DREME) 
 Secondary: UP00028 1 (Tcfap2e primary) 
 E-value
CCCCTCCC
ATTGCCTGAGGCGAT
9.6
Motif Spacing Histogram 
   Significant Motif Spacings (p<0.05) 
  
Upstream Downstream   Upstream Downstream Other Details
Same Strand
Opposite Strand
P-value Gap #  
0.015 5 26  

Total sequences with primary and secondary motif 

5744

Motif Database 

uniprobe mouse
Previous Top
SpaMo version
4.10.0 (Release date: Wed May 21 10:35:36 2014 +1000)
Reference
Tom Whitington, Martin C. Frith, James Johnson and Timothy L. Bailey, "Inferring transcription factor complexes from ChIP-seq data", Nucleic Acids Research, 39(15):e98, 2011.
Command line summary

Result calculation took 8 minutes 14 seconds
Note that the random number generator was initilized with a seed of 1 so you need "-numgen 1" in the list of arguments to replicate the experiment.
show model parameters...