Database and Motifs High-scoring Motif Occurrences Debugging Information


FIMO - Motif search tool

FIMO version 4.10.0, (Release date: Wed May 21 10:35:36 2014 +1000)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE Static_Sex-independent_Output/Static_Sex-independent.fa
Database contains 67058 sequences, 33529000 residues

MOTIFS Static_Sex-independent_Output/dreme_out/dreme.xml (nucleotide)

MOTIF WIDTH BEST POSSIBLE MATCH
VGGAAR 6 AGGAAG
RTAAAYA 7 GTAAACA
RAGKTCA 7 AAGGTCA
CYCCDCCC 8 CCCCTCCC
WGCCAR 6 AGCCAG
ACACRB 6 ACACAG
CHGGRA 6 CTGGGA
AGRDGGCG 8 AGGGGGCG
ARCAAAYA 8 AACAAACA
TTATYW 6 TTATCT
AGGHCA 6 AGGCCA
CACGTG 6 CACGTG
CYGCCDCC 8 CTGCCGCC
AATCAWTA 8 AATCAATA
CARAGTCC 8 CAAAGTCC
TTAYRYAA 8 TTACACAA
AAARMAAA 8 AAAAAAAA
TGACGTMA 8 TGACGTCA
RGAAAB 6 AGAAAG
GGGMGGGA 8 GGGAGGGA
ARAGGGCA 8 AGAGGGCA
CASAGM 6 CAGAGC
AAATAY 6 AAATAC
CCACRYCC 8 CCACACCC
GCVTGCGY 8 GCCTGCGC
GTSACAK 7 GTGACAG
TTTAWW 6 TTTAAT
CSTCCTCC 8 CCTCCTCC
CAAAGGTY 8 CAAAGGTT
CAGGMTG 7 CAGGCTG
GCDGCMGC 8 GCAGCAGC
CTGAGYCA 8 CTGAGTCA
CTGTAAYY 8 CTGTAACT
STGGCCA 7 CTGGCCA
MCGTGR 6 CCGTGG
CTTTRMCC 8 CTTTGCCC
GATCAATA 8 GATCAATA
ATGGCGKC 8 ATGGCGGC
CCBGCCTC 8 CCTGCCTC
CTGGGYW 7 CTGGGCT
TTGTGMAA 8 TTGTGCAA
CVGGGTCA 8 CAGGGTCA
GTTAATBA 8 GTTAATCA
CAGCHCCG 8 CAGCCCCG
AAAGTMCA 8 AAAGTACA
CGGKGAC 7 CGGGGAC
AGRTGGCA 8 AGATGGCA
AAACATTW 8 AAACATTT
ATKWCATC 8 ATGTCATC
CCGBAGCC 8 CCGCAGCC
GCCATGK 7 GCCATGG
TACADA 6 TACAAA
GMAAACA 7 GCAAACA
AGGCDGAG 8 AGGCTGAG
ATCGATH 7 ATCGATC
GCTGGRGA 8 GCTGGAGA
TTAYGAAA 8 TTATGAAA
CCCGCCC 7 CCCGCCC
TGKGGACA 8 TGGGGACA
CCABCTCC 8 CCACCTCC
CCGVGTCC 8 CCGCGTCC
TATTGACW 8 TATTGACT
GATGAYGA 8 GATGATGA

Random model letter frequencies (from Static_Sex-independent_Output/background):
A 0.241 C 0.259 G 0.259 T 0.241

SECTION I: HIGH-SCORING MOTIF OCCURRENCES
Motif Sequence Name Strand Start End p-value q-value Matched Sequence
RTAAAYA chr1 + 4792081 4792087 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 9540735 9540741 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 9897275 9897281 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 13161412 13161418 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 13195039 13195045 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 13313449 13313455 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 13333055 13333061 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 13454394 13454400 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 13618831 13618837 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 13629821 13629827 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 16162417 16162423 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 16189590 16189596 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 16218184 16218190 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 21318849 21318855 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 22106821 22106827 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 22545098 22545104 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 23293647 23293653 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 24800494 24800500 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 30931551 30931557 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 30994370 30994376 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 31001964 31001970 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 31129825 31129831 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 33099513 33099519 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 34160605 34160611 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 34178053 34178059 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 34180537 34180543 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 36132275 36132281 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 36132599 36132605 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 36330530 36330536 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 36593425 36593431 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 36837534 36837540 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 36839538 36839544 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 37033973 37033979 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 37082987 37082993 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 37357975 37357981 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 38175657 38175663 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 39044230 39044236 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 39124883 39124889 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 39162481 39162487 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 39502750 39502756 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 39502924 39502930 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 39665309 39665315 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 39771155 39771161 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 40196906 40196912 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 40213167 40213173 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 40287264 40287270 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 40368604 40368610 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 43362322 43362328 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 43501571 43501577 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 43542114 43542120 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 43591443 43591449 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 44072786 44072792 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 45962003 45962009 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 46910288 46910294 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 51322294 51322300 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 51624130 51624136 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 51816898 51816904 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 51827030 51827036 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 52053667 52053673 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 52485107 52485113 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 52906425 52906431 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 54580980 54580986 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 54872418 54872424 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 54906995 54907001 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 54907027 54907033 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 54982910 54982916 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 55793170 55793176 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 55793212 55793218 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 56351479 56351485 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 56596799 56596805 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 57326527 57326533 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 57398318 57398324 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 57448402 57448408 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 57449639 57449645 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 57493200 57493206 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 58088615 58088621 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 58149582 58149588 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 58201498 58201504 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 58479678 58479684 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 58480006 58480012 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 58480031 58480037 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 59231760 59231766 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 59269265 59269271 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 59419847 59419853 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 59460925 59460931 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 59480007 59480013 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 59560669 59560675 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 60351224 60351230 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 60620295 60620301 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 60669033 60669039 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 60680429 60680435 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 60709666 60709672 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 60714005 60714011 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 60719061 60719067 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 61430797 61430803 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 62221807 62221813 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 62512329 62512335 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 62781153 62781159 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 62868551 62868557 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 62868642 62868648 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 62874562 62874568 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 63227947 63227953 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 63480686 63480692 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 64168245 64168251 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 64804016 64804022 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 65222872 65222878 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 66148143 66148149 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 66597626 66597632 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 67160161 67160167 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 67163388 67163394 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 67180440 67180446 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 67192822 67192828 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 67202351 67202357 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 67202592 67202598 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 67238604 67238610 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 67264204 67264210 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 69734454 69734460 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 70993447 70993453 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 71278317 71278323 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 71676765 71676771 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 71983955 71983961 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 72059484 72059490 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 72170555 72170561 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 72229850 72229856 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 72271010 72271016 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 72308904 72308910 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 72961555 72961561 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 73970142 73970148 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 74061291 74061297 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 74106371 74106377 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 74244710 74244716 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 74276701 74276707 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 74296978 74296984 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 74342642 74342648 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 75094848 75094854 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 75144581 75144587 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 75211303 75211309 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 75584938 75584944 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 75649202 75649208 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 75657115 75657121 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 75657253 75657259 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 76939584 76939590 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 76939632 76939638 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 78535245 78535251 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 78690307 78690313 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 79413143 79413149 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 79463364 79463370 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 79589263 79589269 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 82029251 82029257 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 82956651 82956657 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 82970900 82970906 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 82971164 82971170 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 84237852 84237858 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 84237877 84237883 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 87760914 87760920 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 88303444 88303450 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 88375716 88375722 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 88375865 88375871 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 88497081 88497087 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 88504926 88504932 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 89788413 89788419 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 89937263 89937269 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 89937499 89937505 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 89941578 89941584 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 89945806 89945812 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 90034233 90034239 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 90059590 90059596 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 90103669 90103675 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 90175960 90175966 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 90185975 90185981 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 90318835 90318841 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 91001203 91001209 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 91412536 91412542 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 91516710 91516716 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 91541107 91541113 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 92137084 92137090 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 92301609 92301615 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 92305545 92305551 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 92866232 92866238 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 93077982 93077988 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 93361290 93361296 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 93858222 93858228 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 93885461 93885467 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 93984595 93984601 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 94593691 94593697 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 95373084 95373090 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 99815259 99815265 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 99815354 99815360 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 99890794 99890800 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 101686993 101686999 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 106502125 106502131 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 107011586 107011592 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 107781921 107781927 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 107850846 107850852 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 107850864 107850870 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 108085621 108085627 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 108153755 108153761 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 108291994 108292000 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 108599807 108599813 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 109838821 109838827 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 109921415 109921421 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 120373437 120373443 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 121106701 121106707 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 121191923 121191929 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 121416135 121416141 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 122166855 122166861 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 123232673 123232679 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 123247409 123247415 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 127613114 127613120 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 128490168 128490174 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 129628434 129628440 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 129849225 129849231 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 132530550 132530556 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 132615157 132615163 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 132719011 132719017 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 132737735 132737741 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 132990694 132990700 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 133083646 133083652 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 133178840 133178846 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 133382908 133382914 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 133425338 133425344 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 133445729 133445735 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 133509300 133509306 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 133520505 133520511 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 133879535 133879541 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 133889577 133889583 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 134052466 134052472 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 134054200 134054206 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 134234757 134234763 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 134239339 134239345 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 134270891 134270897 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 134285822 134285828 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 134483565 134483571 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 134543919 134543925 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 135000104 135000110 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 135018217 135018223 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 135152117 135152123 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 135161844 135161850 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 135176393 135176399 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 135198707 135198713 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 135273837 135273843 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 135278975 135278981 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 135515047 135515053 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 135976520 135976526 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 136002588 136002594 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 136148645 136148651 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 137051143 137051149 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 137178429 137178435 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 137264824 137264830 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 137431914 137431920 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 137636190 137636196 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 137678071 137678077 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 + 138339662 138339668 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 138402942 138402948 5.47e-05 0.593 GTAAACA
RTAAAYA chr1 − 138440349 138440355 5.47e-05 0.593 GTAAACA
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RTAAAYA chr11 + 33633367 33633373 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 33715684 33715690 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 33973795 33973801 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 34017086 34017092 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 34787431 34787437 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 35597610 35597616 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 35730837 35730843 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 38414563 38414569 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 40505931 40505937 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 43247258 43247264 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 43436521 43436527 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 43596819 43596825 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 45663579 45663585 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 46112402 46112408 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 46244975 46244981 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 48647617 48647623 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 49471670 49471676 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 49568931 49568937 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 49651478 49651484 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 49998577 49998583 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 49998626 49998632 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 50017379 50017385 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 50026654 50026660 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 50048884 50048890 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 50456279 50456285 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 50582968 50582974 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 51353458 51353464 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 51423024 51423030 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 52067489 52067495 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 52146509 52146515 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 52182803 52182809 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 52191224 52191230 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 52197278 52197284 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 52203875 52203881 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 52215126 52215132 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 52231808 52231814 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 52846095 52846101 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 53238492 53238498 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 53259731 53259737 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 53571334 53571340 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 53820530 53820536 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 53835316 53835322 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 54769687 54769693 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 54841536 54841542 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 54906857 54906863 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 57258978 57258984 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 57330786 57330792 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 57331931 57331937 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 57501886 57501892 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 57769723 57769729 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 57797283 57797289 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 57835416 57835422 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 57905698 57905704 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 57909668 57909674 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 58028999 58029005 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 58418178 58418184 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 59245457 59245463 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 59245939 59245945 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 59623154 59623160 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 60054176 60054182 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 60602517 60602523 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 60622056 60622062 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 60622910 60622916 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 60630505 60630511 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 60715988 60715994 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 61223706 61223712 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 61359640 61359646 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 62301604 62301610 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 62308868 62308874 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 62420399 62420405 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 62890767 62890773 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 63581312 63581318 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 63678296 63678302 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 64410115 64410121 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 66812127 66812133 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 67043844 67043850 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 67241850 67241856 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 67440869 67440875 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 68639028 68639034 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 68678526 68678532 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 68876696 68876702 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 68887181 68887187 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 68924001 68924007 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 69191424 69191430 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 69476320 69476326 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 69506415 69506421 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 70027621 70027627 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 70027621 70027627 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 70281939 70281945 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 70377246 70377252 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 70492254 70492260 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 70526266 70526272 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 70544300 70544306 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 70555247 70555253 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 70783804 70783810 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 72365333 72365339 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 74448380 74448386 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 75257439 75257445 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 75277572 75277578 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 75308348 75308354 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 75310221 75310227 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 75310378 75310384 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 75382761 75382767 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 75790563 75790569 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 76523452 76523458 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 76523802 76523808 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 76544319 76544325 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 76788615 76788621 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 76911812 76911818 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 77199838 77199844 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 77258462 77258468 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 77291126 77291132 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 77477427 77477433 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 77714289 77714295 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 77798216 77798222 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 77874235 77874241 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 77901362 77901368 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 77934703 77934709 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 77934921 77934927 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 77993294 77993300 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 78348454 78348460 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 78354137 78354143 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 78369434 78369440 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 78908514 78908520 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 79082845 79082851 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 79089951 79089957 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 79095264 79095270 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 79100046 79100052 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 79585106 79585112 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 79656599 79656605 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 79690869 79690875 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 79962028 79962034 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 80788483 80788489 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 80790203 80790209 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 81188090 81188096 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 83556814 83556820 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 83629377 83629383 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 83691457 83691463 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 83727718 83727724 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 83736220 83736226 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 83750121 83750127 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 83995678 83995684 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 84006652 84006658 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 84032642 84032648 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 84061032 84061038 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 84336220 84336226 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 84336773 84336779 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 84644638 84644644 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 84703432 84703438 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 85166281 85166287 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 85339538 85339544 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 85391741 85391747 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 86621139 86621145 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 86730480 86730486 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 86775544 86775550 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 86806880 86806886 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 87392452 87392458 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 87392886 87392892 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 87805455 87805461 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 87805593 87805599 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 88109111 88109117 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 88274000 88274006 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 88345805 88345811 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 88722292 88722298 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 88869121 88869127 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 89165093 89165099 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 90046199 90046205 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 90093031 90093037 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 90109723 90109729 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 − 93814737 93814743 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 93850322 93850328 5.47e-05 0.593 GTAAACA
RTAAAYA chr11 + 93998791 93998797 5.47e-05 0.593 GTAAACA
DEBUGGING INFORMATION

Command line: 

/share/pkg/meme/4.10.0_4/install/bin/fimo --parse-genomic-coord --verbosity 1 --oc Static_Sex-independent_Output/fimo_out_3 --bgfile Static_Sex-independent_Output/background --motif RTAAAYA Static_Sex-independent_Output/dreme_out/dreme.xml Static_Sex-independent_Output/Static_Sex-independent.fa

Settings: 




output directory = Static_Sex-independent_Output/fimo_out_3
MEME file name = Static_Sex-independent_Output/dreme_out/dreme.xml
sequence file name = Static_Sex-independent_Output/Static_Sex-independent.fa




background file name = Static_Sex-independent_Output/background
allow clobber = true
compute q-values = true




parse genomic coord. = true
text only = false
scan both strands = true




max sequence length = 250000000
output threshold = 0.0001
threshold type = p-value




max stored scores = 100000
pseudocount = 0.1
verbosity = 1




selected motif = RTAAAYA

This information can be useful in the event you wish to report a problem with the FIMO software.

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