# DREME 4.10.0 # command: dreme -v 1 -oc Static_Male-biased_Output/dreme_out -p Static_Male-biased_Output/seqs-centered -n Static_Male-biased_Output/seqs-shuffled -png # host: scc-pg6 # when: Wed Jun 07 10:46:47 EDT 2017 # positives: 1954 # from: Static_Male-biased_Output/seqs-centered (Wed Jun 07 10:44:39 EDT 2017) # negatives: 1954 # from: Static_Male-biased_Output/seqs-shuffled (Wed Jun 07 10:44:40 EDT 2017) MEME version 4.10.0 ALPHABET= ACGT strands: + - Background letter frequencies (from dataset): A 0.268 C 0.230 G 0.232 T 0.270 MOTIF ATYGATY DREME # Word RC Word Pos Neg P-value E-value # BEST ATYGATY RATCRAT 247 64 7.8e-029 3.1e-024 # ATTGATT AATCAAT 157 32 3.2e-022 1.3e-017 # ATTGATC GATCAAT 74 26 6.2e-007 2.4e-002 # ATCGATC GATCGAT 20 4 7.5e-004 2.9e+001 # ATCGATT AATCGAT 19 4 1.3e-003 4.9e+001 letter-probability matrix: alength= 4 w= 7 nsites= 290 E= 3.1e-024 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.127586 0.000000 0.872414 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.331034 0.000000 0.668966 MOTIF TRTTTR DREME # Word RC Word Pos Neg P-value E-value # BEST TRTTTR YAAAYA 671 410 5.2e-021 2.0e-016 # TATTTG CAAATA 215 105 7.0e-011 2.7e-006 # TGTTTG CAAACA 271 172 3.5e-007 1.4e-002 # TGTTTA TAAACA 187 113 5.3e-006 2.1e-001 # TATTTA TAAATA 143 82 1.7e-005 6.7e-001 letter-probability matrix: alength= 4 w= 6 nsites= 861 E= 2.0e-016 0.000000 0.000000 0.000000 1.000000 0.426249 0.000000 0.573751 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.390244 0.000000 0.609756 0.000000 MOTIF CAAAGKY DREME # Word RC Word Pos Neg P-value E-value # BEST CAAAGKY RMCTTTG 286 125 1.6e-017 6.0e-013 # CAAAGGT ACCTTTG 100 33 1.4e-009 5.3e-005 # CAAAGTC GACTTTG 74 32 2.2e-005 8.5e-001 # CAAAGTT AACTTTG 70 35 3.5e-004 1.3e+001 # CAAAGGC GCCTTTG 56 30 3.0e-003 1.2e+002 letter-probability matrix: alength= 4 w= 7 nsites= 305 E= 6.0e-013 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.521311 0.478689 0.000000 0.432787 0.000000 0.567213 MOTIF CMSAG DREME # Word RC Word Pos Neg P-value E-value # BEST CMSAG CTSKG 1457 1223 4.2e-016 1.6e-011 # CACAG CTGTG 746 565 5.1e-010 2.0e-005 # CAGAG CTCTG 756 596 4.4e-008 1.7e-003 # CCCAG CTGGG 645 533 5.4e-005 2.1e+000 # CCGAG CTCGG 133 86 6.6e-004 2.6e+001 letter-probability matrix: alength= 4 w= 5 nsites= 2713 E= 1.6e-011 0.000000 1.000000 0.000000 0.000000 0.666052 0.333948 0.000000 0.000000 0.000000 0.620346 0.379654 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 MOTIF CCWGGAA DREME # Word RC Word Pos Neg P-value E-value # BEST CCWGGAA TTCCWGG 151 58 1.5e-011 5.5e-007 # CCTGGAA TTCCAGG 96 34 1.5e-008 5.5e-004 # CCAGGAA TTCCTGG 84 29 7.4e-008 2.7e-003 letter-probability matrix: alength= 4 w= 7 nsites= 157 E= 5.5e-007 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.477707 0.000000 0.000000 0.522293 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CACGKG DREME # Word RC Word Pos Neg P-value E-value # BEST CACGKG CMCGTG 99 31 4.8e-010 1.8e-005 # CACGTG CACGTG 57 12 1.4e-008 5.3e-004 # CACGGG CCCGTG 44 19 1.0e-003 3.8e+001 letter-probability matrix: alength= 4 w= 6 nsites= 107 E= 1.8e-005 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.448598 0.551402 0.000000 0.000000 1.000000 0.000000 MOTIF TGGCW DREME # Word RC Word Pos Neg P-value E-value # BEST TGGCW WGCCA 954 771 2.2e-009 8.1e-005 # TGGCT AGCCA 558 408 1.6e-008 5.7e-004 # TGGCA TGCCA 547 474 4.4e-003 1.6e+002 letter-probability matrix: alength= 4 w= 5 nsites= 1296 E= 8.1e-005 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500772 0.000000 0.000000 0.499228 MOTIF AATAAAW DREME # Word RC Word Pos Neg P-value E-value # BEST AATAAAW WTTTATT 100 41 2.3e-007 8.1e-003 # AATAAAA TTTTATT 66 26 1.5e-005 5.3e-001 # AATAAAT ATTTATT 37 16 2.6e-003 9.2e+001 letter-probability matrix: alength= 4 w= 7 nsites= 103 E= 8.1e-003 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.650485 0.000000 0.000000 0.349515 MOTIF CCCWCCCC DREME # Word RC Word Pos Neg P-value E-value # BEST CCCWCCCC GGGGWGGG 64 19 2.8e-007 1.0e-002 # CCCACCCC GGGGTGGG 29 5 1.8e-005 6.4e-001 # CCCTCCCC GGGGAGGG 38 14 5.5e-004 2.0e+001 letter-probability matrix: alength= 4 w= 8 nsites= 72 E= 1.0e-002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.402778 0.000000 0.000000 0.597222 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TGACCTW DREME # Word RC Word Pos Neg P-value E-value # BEST TGACCTW WAGGTCA 109 50 1.0e-006 3.7e-002 # TGACCTT AAGGTCA 72 33 7.3e-005 2.6e+000 # TGACCTA TAGGTCA 38 17 3.0e-003 1.1e+002 letter-probability matrix: alength= 4 w= 7 nsites= 112 E= 3.7e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.357143 0.000000 0.000000 0.642857 Time 111.23 secs.