# DREME 4.10.0 # command: dreme -v 1 -oc Dynamic_Sex-independent_Output/dreme_out -p Dynamic_Sex-independent_Output/seqs-centered -n Dynamic_Sex-independent_Output/seqs-shuffled -png # host: scc-ph1 # when: Wed Jun 07 10:41:26 EDT 2017 # positives: 1624 # from: Dynamic_Sex-independent_Output/seqs-centered (Wed Jun 07 10:39:38 EDT 2017) # negatives: 1624 # from: Dynamic_Sex-independent_Output/seqs-shuffled (Wed Jun 07 10:39:39 EDT 2017) MEME version 4.10.0 ALPHABET= ACGT strands: + - Background letter frequencies (from dataset): A 0.263 C 0.239 G 0.236 T 0.262 MOTIF TCYWGGAA DREME # Word RC Word Pos Neg P-value E-value # BEST TCYWGGAA TTCCWRGA 159 24 3.3e-027 1.3e-022 # TCCTGGAA TTCCAGGA 87 5 3.7e-021 1.4e-016 # TCCAGGAA TTCCTGGA 86 8 2.4e-018 9.3e-014 # TCTAGGAA TTCCTAGA 26 5 9.0e-005 3.5e+000 # TCTTGGAA TTCCAAGA 35 10 1.1e-004 4.4e+000 letter-probability matrix: alength= 4 w= 8 nsites= 162 E= 1.3e-022 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.623457 0.000000 0.376543 0.444444 0.000000 0.000000 0.555556 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CWGGRA DREME # Word RC Word Pos Neg P-value E-value # BEST CWGGRA TYCCWG 670 431 4.5e-019 1.7e-014 # CTGGGA TCCCAG 223 127 3.2e-008 1.3e-003 # CAGGAA TTCCTG 213 130 1.3e-006 5.0e-002 # CTGGAA TTCCAG 198 126 1.5e-005 5.9e-001 # CAGGGA TCCCTG 163 115 1.6e-003 6.1e+001 letter-probability matrix: alength= 4 w= 6 nsites= 831 E= 1.7e-014 0.000000 1.000000 0.000000 0.000000 0.466907 0.000000 0.000000 0.533093 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.519856 0.000000 0.480144 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AGGBCA DREME # Word RC Word Pos Neg P-value E-value # BEST AGGBCA TGVCCT 476 307 2.4e-012 9.1e-008 # AGGTCA TGACCT 215 113 1.6e-009 6.0e-005 # AGGCCA TGGCCT 145 100 1.7e-003 6.5e+001 # AGGGCA TGCCCT 163 118 3.0e-003 1.1e+002 letter-probability matrix: alength= 4 w= 6 nsites= 558 E= 9.1e-008 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.274194 0.322581 0.403226 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AHACASA DREME # Word RC Word Pos Neg P-value E-value # BEST AHACASA TSTGTDT 286 153 4.6e-012 1.7e-007 # ACACAGA TCTGTGT 77 38 1.4e-004 5.2e+000 # AAACAGA TCTGTTT 73 37 3.1e-004 1.2e+001 # ATACACA TGTGTAT 32 10 4.4e-004 1.7e+001 # AAACACA TGTGTTT 70 41 3.3e-003 1.3e+002 # ATACAGA TCTGTAT 18 5 5.2e-003 2.0e+002 # ACACACA TGTGTGT 73 47 9.8e-003 3.7e+002 letter-probability matrix: alength= 4 w= 7 nsites= 341 E= 1.7e-007 1.000000 0.000000 0.000000 0.000000 0.395894 0.451613 0.000000 0.152493 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.533724 0.466276 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CYTGGC DREME # Word RC Word Pos Neg P-value E-value # BEST CYTGGC GCCARG 289 164 1.4e-010 5.1e-006 # CTTGGC GCCAAG 156 92 1.4e-005 5.5e-001 # CCTGGC GCCAGG 145 85 2.5e-005 9.5e-001 letter-probability matrix: alength= 4 w= 6 nsites= 323 E= 5.1e-006 0.000000 1.000000 0.000000 0.000000 0.000000 0.498452 0.000000 0.501548 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 MOTIF TCTGAGWA DREME # Word RC Word Pos Neg P-value E-value # BEST TCTGAGWA TWCTCAGA 58 11 2.7e-009 1.0e-004 # TCTGAGAA TTCTCAGA 42 9 1.4e-006 5.4e-002 # TCTGAGTA TACTCAGA 16 2 6.4e-004 2.4e+001 letter-probability matrix: alength= 4 w= 8 nsites= 59 E= 1.0e-004 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.728814 0.000000 0.000000 0.271186 1.000000 0.000000 0.000000 0.000000 MOTIF RTMAATA DREME # Word RC Word Pos Neg P-value E-value # BEST RTMAATA TATTKAY 115 45 6.7e-009 2.5e-004 # GTAAATA TATTTAC 42 15 2.1e-004 7.7e+000 # ATCAATA TATTGAT 31 10 6.8e-004 2.5e+001 # ATAAATA TATTTAT 26 10 5.4e-003 2.0e+002 # GTCAATA TATTGAC 25 10 8.1e-003 3.0e+002 letter-probability matrix: alength= 4 w= 7 nsites= 122 E= 2.5e-004 0.442623 0.000000 0.557377 0.000000 0.000000 0.000000 0.000000 1.000000 0.540984 0.459016 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 MOTIF ASAAACA DREME # Word RC Word Pos Neg P-value E-value # BEST ASAAACA TGTTTST 110 47 1.4e-007 5.3e-003 # AGAAACA TGTTTCT 54 21 7.4e-005 2.8e+000 # ACAAACA TGTTTGT 58 28 6.9e-004 2.6e+001 letter-probability matrix: alength= 4 w= 7 nsites= 113 E= 5.3e-003 1.000000 0.000000 0.000000 0.000000 0.000000 0.522124 0.477876 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CCCRCCCC DREME # Word RC Word Pos Neg P-value E-value # BEST CCCRCCCC GGGGYGGG 42 8 4.9e-007 1.8e-002 # CCCACCCC GGGGTGGG 26 5 9.0e-005 3.4e+000 # CCCGCCCC GGGGCGGG 17 3 1.3e-003 4.7e+001 letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 1.8e-002 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.627907 0.000000 0.372093 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 Time 90.85 secs.