Module	Section	Sample Name	Source
RSeQC	infer_experiment	GSE223518_M04_Read_Strandness	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M04/Read_Strandness/GSE223518_M04_Read_Strandness.txt
RSeQC	infer_experiment	GSE223518_M07_Read_Strandness	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M07/Read_Strandness/GSE223518_M07_Read_Strandness.txt
RSeQC	infer_experiment	GSE223518_M06_Read_Strandness	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M06/Read_Strandness/GSE223518_M06_Read_Strandness.txt
RSeQC	infer_experiment	GSE223518_M05_Read_Strandness	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M05/Read_Strandness/GSE223518_M05_Read_Strandness.txt
RSeQC	infer_experiment	GSE223518_M02_Read_Strandness	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M02/Read_Strandness/GSE223518_M02_Read_Strandness.txt
RSeQC	infer_experiment	GSE223518_M01_Read_Strandness	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M01/Read_Strandness/GSE223518_M01_Read_Strandness.txt
RSeQC	infer_experiment	GSE223518_M08_Read_Strandness	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M08/Read_Strandness/GSE223518_M08_Read_Strandness.txt
RSeQC	infer_experiment	GSE223518_M03_Read_Strandness	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M03/Read_Strandness/GSE223518_M03_Read_Strandness.txt
featureCounts	all_sections	GSE223518_M04_sorted	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M04/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE223518_M04_featureCounts.out.summary
featureCounts	all_sections	GSE223518_M07_sorted	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M07/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE223518_M07_featureCounts.out.summary
featureCounts	all_sections	GSE223518_M06_sorted	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M06/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE223518_M06_featureCounts.out.summary
featureCounts	all_sections	GSE223518_M05_sorted	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M05/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE223518_M05_featureCounts.out.summary
featureCounts	all_sections	GSE223518_M02_sorted	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M02/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE223518_M02_featureCounts.out.summary
featureCounts	all_sections	GSE223518_M01_sorted	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M01/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE223518_M01_featureCounts.out.summary
featureCounts	all_sections	GSE223518_M08_sorted	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M08/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE223518_M08_featureCounts.out.summary
featureCounts	all_sections	GSE223518_M03_sorted	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M03/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/GSE223518_M03_featureCounts.out.summary
Picard	DuplicationMetrics	GSE223518_M04_primary_unique	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M04/CollectDuplicates/GSE223518_M04_marked_dup_metrics.txt
Picard	DuplicationMetrics	GSE223518_M07_primary_unique	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M07/CollectDuplicates/GSE223518_M07_marked_dup_metrics.txt
Picard	DuplicationMetrics	GSE223518_M06_primary_unique	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M06/CollectDuplicates/GSE223518_M06_marked_dup_metrics.txt
Picard	DuplicationMetrics	GSE223518_M05_primary_unique	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M05/CollectDuplicates/GSE223518_M05_marked_dup_metrics.txt
Picard	DuplicationMetrics	GSE223518_M02_primary_unique	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M02/CollectDuplicates/GSE223518_M02_marked_dup_metrics.txt
Picard	DuplicationMetrics	GSE223518_M01_primary_unique	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M01/CollectDuplicates/GSE223518_M01_marked_dup_metrics.txt
Picard	DuplicationMetrics	GSE223518_M08_primary_unique	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M08/CollectDuplicates/GSE223518_M08_marked_dup_metrics.txt
Picard	DuplicationMetrics	GSE223518_M03_primary_unique	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M03/CollectDuplicates/GSE223518_M03_marked_dup_metrics.txt
Picard	RnaSeqMetrics	GSE223518_M04_primary_unique	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M04/CollectRnaSeqMetrics/GSE223518_M04_metrics
Picard	RnaSeqMetrics	GSE223518_M07_primary_unique	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M07/CollectRnaSeqMetrics/GSE223518_M07_metrics
Picard	RnaSeqMetrics	GSE223518_M06_primary_unique	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M06/CollectRnaSeqMetrics/GSE223518_M06_metrics
Picard	RnaSeqMetrics	GSE223518_M05_primary_unique	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M05/CollectRnaSeqMetrics/GSE223518_M05_metrics
Picard	RnaSeqMetrics	GSE223518_M02_primary_unique	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M02/CollectRnaSeqMetrics/GSE223518_M02_metrics
Picard	RnaSeqMetrics	GSE223518_M01_primary_unique	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M01/CollectRnaSeqMetrics/GSE223518_M01_metrics
Picard	RnaSeqMetrics	GSE223518_M08_primary_unique	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M08/CollectRnaSeqMetrics/GSE223518_M08_metrics
Picard	RnaSeqMetrics	GSE223518_M03_primary_unique	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M03/CollectRnaSeqMetrics/GSE223518_M03_metrics
Samtools	flagstat	GSE223518_M04_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M04/aligner/GSE223518_M04_statistics_for_all_accepted_reads.txt
Samtools	flagstat	GSE223518_M04_statistics_for_primary_reads	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M04/aligner/GSE223518_M04_statistics_for_primary_reads.txt
Samtools	flagstat	GSE223518_M04_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M04/aligner/GSE223518_M04_statistics_for_primary_unique_reads.txt
Samtools	flagstat	GSE223518_M07_statistics_for_primary_reads	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M07/aligner/GSE223518_M07_statistics_for_primary_reads.txt
Samtools	flagstat	GSE223518_M07_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M07/aligner/GSE223518_M07_statistics_for_all_accepted_reads.txt
Samtools	flagstat	GSE223518_M07_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M07/aligner/GSE223518_M07_statistics_for_primary_unique_reads.txt
Samtools	flagstat	GSE223518_M06_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M06/aligner/GSE223518_M06_statistics_for_all_accepted_reads.txt
Samtools	flagstat	GSE223518_M06_statistics_for_primary_reads	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M06/aligner/GSE223518_M06_statistics_for_primary_reads.txt
Samtools	flagstat	GSE223518_M06_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M06/aligner/GSE223518_M06_statistics_for_primary_unique_reads.txt
Samtools	flagstat	GSE223518_M05_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M05/aligner/GSE223518_M05_statistics_for_primary_unique_reads.txt
Samtools	flagstat	GSE223518_M05_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M05/aligner/GSE223518_M05_statistics_for_all_accepted_reads.txt
Samtools	flagstat	GSE223518_M05_statistics_for_primary_reads	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M05/aligner/GSE223518_M05_statistics_for_primary_reads.txt
Samtools	flagstat	GSE223518_M02_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M02/aligner/GSE223518_M02_statistics_for_primary_unique_reads.txt
Samtools	flagstat	GSE223518_M02_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M02/aligner/GSE223518_M02_statistics_for_all_accepted_reads.txt
Samtools	flagstat	GSE223518_M02_statistics_for_primary_reads	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M02/aligner/GSE223518_M02_statistics_for_primary_reads.txt
Samtools	flagstat	GSE223518_M01_statistics_for_primary_reads	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M01/aligner/GSE223518_M01_statistics_for_primary_reads.txt
Samtools	flagstat	GSE223518_M01_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M01/aligner/GSE223518_M01_statistics_for_all_accepted_reads.txt
Samtools	flagstat	GSE223518_M01_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M01/aligner/GSE223518_M01_statistics_for_primary_unique_reads.txt
Samtools	flagstat	GSE223518_M08_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M08/aligner/GSE223518_M08_statistics_for_primary_unique_reads.txt
Samtools	flagstat	GSE223518_M08_statistics_for_primary_reads	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M08/aligner/GSE223518_M08_statistics_for_primary_reads.txt
Samtools	flagstat	GSE223518_M08_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M08/aligner/GSE223518_M08_statistics_for_all_accepted_reads.txt
Samtools	flagstat	GSE223518_M03_statistics_for_primary_reads	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M03/aligner/GSE223518_M03_statistics_for_primary_reads.txt
Samtools	flagstat	GSE223518_M03_statistics_for_all_accepted_reads	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M03/aligner/GSE223518_M03_statistics_for_all_accepted_reads.txt
Samtools	flagstat	GSE223518_M03_statistics_for_primary_unique_reads	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M03/aligner/GSE223518_M03_statistics_for_primary_unique_reads.txt
STAR	SummaryLog	GSE223518_M04_GSE223518_M04	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M04/aligner/GSE223518_M04_GSE223518_M04_Log.final.out
STAR	SummaryLog	GSE223518_M07_GSE223518_M07	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M07/aligner/GSE223518_M07_GSE223518_M07_Log.final.out
STAR	SummaryLog	GSE223518_M06_GSE223518_M06	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M06/aligner/GSE223518_M06_GSE223518_M06_Log.final.out
STAR	SummaryLog	GSE223518_M05_GSE223518_M05	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M05/aligner/GSE223518_M05_GSE223518_M05_Log.final.out
STAR	SummaryLog	GSE223518_M02_GSE223518_M02	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M02/aligner/GSE223518_M02_GSE223518_M02_Log.final.out
STAR	SummaryLog	GSE223518_M01_GSE223518_M01	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M01/aligner/GSE223518_M01_GSE223518_M01_Log.final.out
STAR	SummaryLog	GSE223518_M08_GSE223518_M08	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M08/aligner/GSE223518_M08_GSE223518_M08_Log.final.out
STAR	SummaryLog	GSE223518_M03_GSE223518_M03	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M03/aligner/GSE223518_M03_GSE223518_M03_Log.final.out
STAR	ReadsPerGene	GSE223518_M04	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M04/aligner/GSE223518_M04_ReadsPerGene.out.tab
STAR	ReadsPerGene	GSE223518_M07	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M07/aligner/GSE223518_M07_ReadsPerGene.out.tab
STAR	ReadsPerGene	GSE223518_M06	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M06/aligner/GSE223518_M06_ReadsPerGene.out.tab
STAR	ReadsPerGene	GSE223518_M05	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M05/aligner/GSE223518_M05_ReadsPerGene.out.tab
STAR	ReadsPerGene	GSE223518_M02	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M02/aligner/GSE223518_M02_ReadsPerGene.out.tab
STAR	ReadsPerGene	GSE223518_M01	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M01/aligner/GSE223518_M01_ReadsPerGene.out.tab
STAR	ReadsPerGene	GSE223518_M08	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M08/aligner/GSE223518_M08_ReadsPerGene.out.tab
STAR	ReadsPerGene	GSE223518_M03	/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES/GSE223518_M03/aligner/GSE223518_M03_ReadsPerGene.out.tab
FastQC	all_sections	SRR23194220_pass	/projectnb2/wax-dk/max/GSE223518_WT_vs_NASH20/Scripts/03_FASTQC/Job_Summary/GSE223518_M05_FASTQC_R1/fastqc_data.txt
FastQC	all_sections	SRR23194223_pass	/projectnb2/wax-dk/max/GSE223518_WT_vs_NASH20/Scripts/03_FASTQC/Job_Summary/GSE223518_M08_FASTQC_R1/fastqc_data.txt
FastQC	all_sections	SRR23194221_pass	/projectnb2/wax-dk/max/GSE223518_WT_vs_NASH20/Scripts/03_FASTQC/Job_Summary/GSE223518_M06_FASTQC_R1/fastqc_data.txt
FastQC	all_sections	SRR23194218_pass	/projectnb2/wax-dk/max/GSE223518_WT_vs_NASH20/Scripts/03_FASTQC/Job_Summary/GSE223518_M03_FASTQC_R1/fastqc_data.txt
FastQC	all_sections	SRR23194219_pass	/projectnb2/wax-dk/max/GSE223518_WT_vs_NASH20/Scripts/03_FASTQC/Job_Summary/GSE223518_M04_FASTQC_R1/fastqc_data.txt
FastQC	all_sections	SRR23194222_pass	/projectnb2/wax-dk/max/GSE223518_WT_vs_NASH20/Scripts/03_FASTQC/Job_Summary/GSE223518_M07_FASTQC_R1/fastqc_data.txt
FastQC	all_sections	SRR23194216_pass	/projectnb2/wax-dk/max/GSE223518_WT_vs_NASH20/Scripts/03_FASTQC/Job_Summary/GSE223518_M01_FASTQC_R1/fastqc_data.txt
FastQC	all_sections	SRR23194217_pass	/projectnb2/wax-dk/max/GSE223518_WT_vs_NASH20/Scripts/03_FASTQC/Job_Summary/GSE223518_M02_FASTQC_R1/fastqc_data.txt