[2025-07-21 13:06:19,733] multiqc [DEBUG ] This is MultiQC v1.11 [2025-07-21 13:06:19,733] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2025-07-21 13:06:19,734] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2025-07-21 13:06:19,736] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2025-07-21 13:06:19,738] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/GSE223518_WT_vs_NASH20/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2025-07-21 13:06:19,738] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2025-07-21 13:06:19,738] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2025-07-21 13:06:19,738] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/GSE223518_WT_vs_NASH20/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES /projectnb2/wax-dk/max/GSE223518_WT_vs_NASH20/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/GSE223518_WT_vs_NASH20/Scripts/06_CollectMetrics/ [2025-07-21 13:06:20,846] multiqc [WARNING] MultiQC Version v1.30 now available! [2025-07-21 13:06:20,847] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/GSE223518_WT_vs_NASH20/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES /projectnb2/wax-dk/max/GSE223518_WT_vs_NASH20/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/GSE223518_WT_vs_NASH20/Scripts/06_CollectMetrics/ [2025-07-21 13:06:20,847] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/Scripts/99_final_summary/GSE223518_WT_vs_NASH20_multiqc_report [2025-07-21 13:06:20,847] multiqc [DEBUG ] Template : default [2025-07-21 13:06:20,847] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2025-07-21 13:06:20,848] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2025-07-21 13:06:20,848] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpokhqpjzu [2025-07-21 13:06:21,287] multiqc [INFO ] Search path : /projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/SAMPLES [2025-07-21 13:06:21,288] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/GSE223518_WT_vs_NASH20/Scripts/03_FASTQC [2025-07-21 13:06:21,288] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/GSE223518_WT_vs_NASH20/Scripts/06_CollectMetrics [2025-07-21 13:06:21,358] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR23194219_pass.fastq.gz [2025-07-21 13:06:21,489] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M04_SJ.out.tab [2025-07-21 13:06:21,493] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE223518_M04_SJ.out.tab [2025-07-21 13:06:21,493] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE223518_M04_SJ.out.tab [2025-07-21 13:06:21,493] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M04_SJ.out.tab [2025-07-21 13:06:21,500] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE223518_M04_SJ.out.tab [2025-07-21 13:06:21,500] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE223518_M04_SJ.out.tab [2025-07-21 13:06:21,500] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M04_SJ.out.tab [2025-07-21 13:06:21,500] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE223518_M04_SJ.out.tab [2025-07-21 13:06:21,500] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE223518_M04_SJ.out.tab [2025-07-21 13:06:21,500] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE223518_M04_SJ.out.tab [2025-07-21 13:06:21,500] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE223518_M04_SJ.out.tab [2025-07-21 13:06:21,500] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE223518_M04_SJ.out.tab [2025-07-21 13:06:21,533] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE223518_M04_SJ.out.tab [2025-07-21 13:06:23,148] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M04_marked_dup_metrics.txt [2025-07-21 13:06:23,152] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M04_marked_dup_metrics.txt [2025-07-21 13:06:23,204] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:23,208] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:23,209] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:23,209] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:23,214] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:23,214] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:23,214] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:23,214] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:23,214] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:23,214] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:23,214] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:23,214] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:23,233] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:24,159] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:24,163] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:24,164] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:24,164] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:24,171] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:24,171] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:24,171] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:24,171] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:24,171] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:24,171] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:24,171] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:24,171] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:24,190] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE223518_M04_featureCounts.out [2025-07-21 13:06:25,051] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M04_metrics [2025-07-21 13:06:25,053] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M04_metrics [2025-07-21 13:06:25,072] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M04_metrics [2025-07-21 13:06:25,113] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR23194222_pass.fastq.gz [2025-07-21 13:06:25,222] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M07_SJ.out.tab [2025-07-21 13:06:25,225] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE223518_M07_SJ.out.tab [2025-07-21 13:06:25,226] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE223518_M07_SJ.out.tab [2025-07-21 13:06:25,226] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M07_SJ.out.tab [2025-07-21 13:06:25,231] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE223518_M07_SJ.out.tab [2025-07-21 13:06:25,232] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE223518_M07_SJ.out.tab [2025-07-21 13:06:25,232] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M07_SJ.out.tab [2025-07-21 13:06:25,232] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE223518_M07_SJ.out.tab [2025-07-21 13:06:25,232] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE223518_M07_SJ.out.tab [2025-07-21 13:06:25,232] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE223518_M07_SJ.out.tab [2025-07-21 13:06:25,232] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE223518_M07_SJ.out.tab [2025-07-21 13:06:25,232] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE223518_M07_SJ.out.tab [2025-07-21 13:06:25,232] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: GSE223518_M07_SJ.out.tab [2025-07-21 13:06:25,232] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE223518_M07_SJ.out.tab [2025-07-21 13:06:26,908] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M07_marked_dup_metrics.txt [2025-07-21 13:06:26,912] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M07_marked_dup_metrics.txt [2025-07-21 13:06:26,949] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:26,953] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:26,954] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:26,954] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:26,959] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:26,959] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:26,959] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:26,959] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:26,959] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:26,959] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:26,959] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:26,959] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:26,978] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:27,883] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:27,887] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:27,887] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:27,887] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:27,894] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:27,895] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:27,895] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:27,895] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:27,895] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:27,895] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:27,895] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:27,895] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:27,920] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE223518_M07_featureCounts.out [2025-07-21 13:06:28,813] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M07_metrics [2025-07-21 13:06:28,816] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M07_metrics [2025-07-21 13:06:28,819] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M07_metrics [2025-07-21 13:06:28,855] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR23194221_pass.fastq.gz [2025-07-21 13:06:28,959] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M06_SJ.out.tab [2025-07-21 13:06:28,963] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE223518_M06_SJ.out.tab [2025-07-21 13:06:28,963] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE223518_M06_SJ.out.tab [2025-07-21 13:06:28,963] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M06_SJ.out.tab [2025-07-21 13:06:28,968] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE223518_M06_SJ.out.tab [2025-07-21 13:06:28,968] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE223518_M06_SJ.out.tab [2025-07-21 13:06:28,968] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M06_SJ.out.tab [2025-07-21 13:06:28,968] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE223518_M06_SJ.out.tab [2025-07-21 13:06:28,968] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE223518_M06_SJ.out.tab [2025-07-21 13:06:28,968] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE223518_M06_SJ.out.tab [2025-07-21 13:06:28,968] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE223518_M06_SJ.out.tab [2025-07-21 13:06:28,968] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE223518_M06_SJ.out.tab [2025-07-21 13:06:29,002] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE223518_M06_SJ.out.tab [2025-07-21 13:06:30,649] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M06_marked_dup_metrics.txt [2025-07-21 13:06:30,653] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M06_marked_dup_metrics.txt [2025-07-21 13:06:30,733] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:30,737] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:30,737] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:30,737] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:30,744] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:30,745] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:30,745] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:30,745] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:30,745] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:30,745] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:30,745] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:30,745] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:30,769] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:31,693] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:31,697] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:31,698] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:31,698] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:31,704] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:31,704] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:31,704] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:31,704] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:31,704] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:31,704] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:31,704] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:31,704] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:31,724] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE223518_M06_featureCounts.out [2025-07-21 13:06:32,607] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M06_metrics [2025-07-21 13:06:32,609] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M06_metrics [2025-07-21 13:06:32,614] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M06_metrics [2025-07-21 13:06:32,652] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR23194220_pass.fastq.gz [2025-07-21 13:06:32,729] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M05_SJ.out.tab [2025-07-21 13:06:32,733] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE223518_M05_SJ.out.tab [2025-07-21 13:06:32,734] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE223518_M05_SJ.out.tab [2025-07-21 13:06:32,734] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M05_SJ.out.tab [2025-07-21 13:06:32,740] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE223518_M05_SJ.out.tab [2025-07-21 13:06:32,740] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE223518_M05_SJ.out.tab [2025-07-21 13:06:32,740] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M05_SJ.out.tab [2025-07-21 13:06:32,740] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE223518_M05_SJ.out.tab [2025-07-21 13:06:32,740] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE223518_M05_SJ.out.tab [2025-07-21 13:06:32,740] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE223518_M05_SJ.out.tab [2025-07-21 13:06:32,740] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE223518_M05_SJ.out.tab [2025-07-21 13:06:32,740] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE223518_M05_SJ.out.tab [2025-07-21 13:06:32,772] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE223518_M05_SJ.out.tab [2025-07-21 13:06:34,438] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M05_marked_dup_metrics.txt [2025-07-21 13:06:34,441] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M05_marked_dup_metrics.txt [2025-07-21 13:06:34,507] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:34,510] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:34,511] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:34,511] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:34,516] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:34,516] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:34,516] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:34,516] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:34,516] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:34,516] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:34,516] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:34,516] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:34,535] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:35,439] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:35,443] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:35,443] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:35,443] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:35,450] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:35,450] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:35,450] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:35,450] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:35,450] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:35,450] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:35,450] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:35,450] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:35,469] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE223518_M05_featureCounts.out [2025-07-21 13:06:36,345] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M05_metrics [2025-07-21 13:06:36,348] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M05_metrics [2025-07-21 13:06:36,352] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M05_metrics [2025-07-21 13:06:36,398] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR23194217_pass.fastq.gz [2025-07-21 13:06:36,490] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M02_SJ.out.tab [2025-07-21 13:06:36,494] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE223518_M02_SJ.out.tab [2025-07-21 13:06:36,494] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE223518_M02_SJ.out.tab [2025-07-21 13:06:36,494] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M02_SJ.out.tab [2025-07-21 13:06:36,500] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE223518_M02_SJ.out.tab [2025-07-21 13:06:36,500] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE223518_M02_SJ.out.tab [2025-07-21 13:06:36,500] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M02_SJ.out.tab [2025-07-21 13:06:36,500] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE223518_M02_SJ.out.tab [2025-07-21 13:06:36,500] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE223518_M02_SJ.out.tab [2025-07-21 13:06:36,500] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE223518_M02_SJ.out.tab [2025-07-21 13:06:36,500] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE223518_M02_SJ.out.tab [2025-07-21 13:06:36,500] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE223518_M02_SJ.out.tab [2025-07-21 13:06:36,535] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE223518_M02_SJ.out.tab [2025-07-21 13:06:38,222] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M02_marked_dup_metrics.txt [2025-07-21 13:06:38,224] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M02_marked_dup_metrics.txt [2025-07-21 13:06:38,280] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:38,284] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:38,284] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:38,284] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:38,289] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:38,290] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:38,290] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:38,290] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:38,290] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:38,290] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:38,290] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:38,290] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:38,309] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:39,237] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:39,241] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:39,242] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:39,242] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:39,248] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:39,248] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:39,248] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:39,248] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:39,248] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:39,249] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:39,249] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:39,249] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:39,270] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE223518_M02_featureCounts.out [2025-07-21 13:06:40,150] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M02_metrics [2025-07-21 13:06:40,153] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M02_metrics [2025-07-21 13:06:40,157] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M02_metrics [2025-07-21 13:06:40,198] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR23194216_pass.fastq.gz [2025-07-21 13:06:40,332] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M01_SJ.out.tab [2025-07-21 13:06:40,335] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE223518_M01_SJ.out.tab [2025-07-21 13:06:40,336] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE223518_M01_SJ.out.tab [2025-07-21 13:06:40,336] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M01_SJ.out.tab [2025-07-21 13:06:40,340] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE223518_M01_SJ.out.tab [2025-07-21 13:06:40,341] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE223518_M01_SJ.out.tab [2025-07-21 13:06:40,341] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M01_SJ.out.tab [2025-07-21 13:06:40,341] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE223518_M01_SJ.out.tab [2025-07-21 13:06:40,341] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE223518_M01_SJ.out.tab [2025-07-21 13:06:40,341] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE223518_M01_SJ.out.tab [2025-07-21 13:06:40,341] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE223518_M01_SJ.out.tab [2025-07-21 13:06:40,341] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE223518_M01_SJ.out.tab [2025-07-21 13:06:40,372] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE223518_M01_SJ.out.tab [2025-07-21 13:06:41,874] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M01_marked_dup_metrics.txt [2025-07-21 13:06:41,877] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M01_marked_dup_metrics.txt [2025-07-21 13:06:41,949] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:41,953] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:41,953] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:41,954] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:41,958] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:41,958] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:41,958] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:41,958] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:41,958] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:41,959] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:41,959] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:41,959] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:41,977] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:42,887] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:42,891] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:42,892] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:42,892] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:42,896] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:42,896] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:42,896] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:42,896] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:42,897] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:42,897] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:42,897] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:42,897] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:42,916] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE223518_M01_featureCounts.out [2025-07-21 13:06:43,775] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M01_metrics [2025-07-21 13:06:43,778] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M01_metrics [2025-07-21 13:06:43,782] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M01_metrics [2025-07-21 13:06:43,820] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR23194223_pass.fastq.gz [2025-07-21 13:06:43,936] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M08_SJ.out.tab [2025-07-21 13:06:43,940] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE223518_M08_SJ.out.tab [2025-07-21 13:06:43,941] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE223518_M08_SJ.out.tab [2025-07-21 13:06:43,941] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M08_SJ.out.tab [2025-07-21 13:06:43,947] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE223518_M08_SJ.out.tab [2025-07-21 13:06:43,947] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE223518_M08_SJ.out.tab [2025-07-21 13:06:43,947] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M08_SJ.out.tab [2025-07-21 13:06:43,947] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE223518_M08_SJ.out.tab [2025-07-21 13:06:43,947] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE223518_M08_SJ.out.tab [2025-07-21 13:06:43,947] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE223518_M08_SJ.out.tab [2025-07-21 13:06:43,947] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE223518_M08_SJ.out.tab [2025-07-21 13:06:43,947] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE223518_M08_SJ.out.tab [2025-07-21 13:06:43,947] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: GSE223518_M08_SJ.out.tab [2025-07-21 13:06:43,947] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE223518_M08_SJ.out.tab [2025-07-21 13:06:45,654] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M08_marked_dup_metrics.txt [2025-07-21 13:06:45,657] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M08_marked_dup_metrics.txt [2025-07-21 13:06:45,718] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:45,722] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:45,722] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:45,722] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:45,728] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:45,728] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:45,728] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:45,728] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:45,728] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:45,728] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:45,728] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:45,728] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:45,747] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:46,653] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:46,657] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:46,658] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:46,658] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:46,663] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:46,663] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:46,663] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:46,663] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:46,663] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:46,663] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:46,663] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:46,663] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:46,682] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE223518_M08_featureCounts.out [2025-07-21 13:06:47,556] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M08_metrics [2025-07-21 13:06:47,559] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M08_metrics [2025-07-21 13:06:47,580] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M08_metrics [2025-07-21 13:06:47,627] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR23194218_pass.fastq.gz [2025-07-21 13:06:47,687] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M03_SJ.out.tab [2025-07-21 13:06:47,691] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE223518_M03_SJ.out.tab [2025-07-21 13:06:47,691] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE223518_M03_SJ.out.tab [2025-07-21 13:06:47,691] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M03_SJ.out.tab [2025-07-21 13:06:47,697] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE223518_M03_SJ.out.tab [2025-07-21 13:06:47,697] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE223518_M03_SJ.out.tab [2025-07-21 13:06:47,697] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M03_SJ.out.tab [2025-07-21 13:06:47,697] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE223518_M03_SJ.out.tab [2025-07-21 13:06:47,697] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE223518_M03_SJ.out.tab [2025-07-21 13:06:47,697] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE223518_M03_SJ.out.tab [2025-07-21 13:06:47,697] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE223518_M03_SJ.out.tab [2025-07-21 13:06:47,697] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE223518_M03_SJ.out.tab [2025-07-21 13:06:47,730] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE223518_M03_SJ.out.tab [2025-07-21 13:06:49,389] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M03_marked_dup_metrics.txt [2025-07-21 13:06:49,392] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M03_marked_dup_metrics.txt [2025-07-21 13:06:49,457] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:49,461] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:49,462] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:49,462] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:49,468] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:49,468] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:49,468] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:49,468] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:49,468] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:49,468] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:49,468] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:49,468] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:49,488] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:50,381] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:50,385] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:50,386] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:50,386] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:50,391] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:50,391] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:50,391] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:50,392] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:50,392] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:50,392] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:50,392] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:50,392] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:50,410] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSE223518_M03_featureCounts.out [2025-07-21 13:06:51,270] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSE223518_M03_metrics [2025-07-21 13:06:51,272] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSE223518_M03_metrics [2025-07-21 13:06:51,276] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSE223518_M03_metrics [2025-07-21 13:06:51,324] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-07-21 13:06:51,327] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-07-21 13:06:51,333] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-07-21 13:06:51,346] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-07-21 13:06:51,348] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-07-21 13:06:51,352] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-07-21 13:06:51,363] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2025-07-21 13:06:51,365] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2025-07-21 13:06:51,380] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2025-07-21 13:06:51,383] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2025-07-21 13:06:51,390] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2025-07-21 13:06:51,407] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2025-07-21 13:06:51,409] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2025-07-21 13:06:51,423] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE223518_WT_vs_NASH20_GSE223518_M04.o9271517 [2025-07-21 13:06:51,426] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE223518_WT_vs_NASH20_GSE223518_M04.o9271517 [2025-07-21 13:06:51,443] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE223518_WT_vs_NASH20_GSE223518_M03.o9271516 [2025-07-21 13:06:51,448] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE223518_WT_vs_NASH20_GSE223518_M03.o9271516 [2025-07-21 13:06:51,468] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE223518_WT_vs_NASH20_GSE223518_M07.o9271512 [2025-07-21 13:06:51,470] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE223518_WT_vs_NASH20_GSE223518_M07.o9271512 [2025-07-21 13:06:51,485] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE223518_WT_vs_NASH20_GSE223518_M01.o9271514 [2025-07-21 13:06:51,487] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE223518_WT_vs_NASH20_GSE223518_M01.o9271514 [2025-07-21 13:06:51,502] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE223518_WT_vs_NASH20_GSE223518_M06.o9271511 [2025-07-21 13:06:51,505] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE223518_WT_vs_NASH20_GSE223518_M06.o9271511 [2025-07-21 13:06:51,536] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE223518_WT_vs_NASH20_GSE223518_M08.o9271513 [2025-07-21 13:06:51,539] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE223518_WT_vs_NASH20_GSE223518_M08.o9271513 [2025-07-21 13:06:51,553] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE223518_WT_vs_NASH20_GSE223518_M05.o9271510 [2025-07-21 13:06:51,555] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE223518_WT_vs_NASH20_GSE223518_M05.o9271510 [2025-07-21 13:06:51,572] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE223518_WT_vs_NASH20_GSE223518_M02.o9271515 [2025-07-21 13:06:51,576] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE223518_WT_vs_NASH20_GSE223518_M02.o9271515 [2025-07-21 13:06:51,649] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,654] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,654] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,654] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,661] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,715] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,719] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,720] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,720] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,725] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,779] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,783] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,783] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,783] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,790] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,839] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,843] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,843] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,843] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,850] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,909] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,913] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,914] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,914] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,921] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,959] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,963] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,963] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,963] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:51,969] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:52,015] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:52,019] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:52,020] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:52,020] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:52,026] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:52,072] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:52,075] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:52,076] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:52,076] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:52,082] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-07-21 13:06:52,128] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-07-21 13:06:52,130] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-07-21 13:06:52,130] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-07-21 13:06:52,130] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-07-21 13:06:52,134] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-07-21 13:06:52,146] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2025-07-21 13:06:52,149] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2025-07-21 13:06:52,153] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2025-07-21 13:06:52,165] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-07-21 13:06:52,167] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-07-21 13:06:52,171] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-07-21 13:06:52,187] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2025-07-21 13:06:52,191] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2025-07-21 13:06:52,226] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M08.o9271593 [2025-07-21 13:06:52,229] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M08.o9271593 [2025-07-21 13:06:52,229] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M08.o9271593 [2025-07-21 13:06:52,230] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M08.o9271593 [2025-07-21 13:06:52,235] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M08.o9271593 [2025-07-21 13:06:52,264] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M06.o9271591 [2025-07-21 13:06:52,267] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M06.o9271591 [2025-07-21 13:06:52,267] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M06.o9271591 [2025-07-21 13:06:52,267] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M06.o9271591 [2025-07-21 13:06:52,271] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M06.o9271591 [2025-07-21 13:06:52,305] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M01.o9271594 [2025-07-21 13:06:52,307] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M01.o9271594 [2025-07-21 13:06:52,307] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M01.o9271594 [2025-07-21 13:06:52,308] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M01.o9271594 [2025-07-21 13:06:52,312] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M01.o9271594 [2025-07-21 13:06:52,353] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M03.o9271596 [2025-07-21 13:06:52,357] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M03.o9271596 [2025-07-21 13:06:52,357] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M03.o9271596 [2025-07-21 13:06:52,358] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M03.o9271596 [2025-07-21 13:06:52,364] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M03.o9271596 [2025-07-21 13:06:52,388] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M07.o9271592 [2025-07-21 13:06:52,390] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M07.o9271592 [2025-07-21 13:06:52,391] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M07.o9271592 [2025-07-21 13:06:52,391] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M07.o9271592 [2025-07-21 13:06:52,395] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M07.o9271592 [2025-07-21 13:06:52,431] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M05.o9271590 [2025-07-21 13:06:52,435] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M05.o9271590 [2025-07-21 13:06:52,436] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M05.o9271590 [2025-07-21 13:06:52,436] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M05.o9271590 [2025-07-21 13:06:52,441] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M05.o9271590 [2025-07-21 13:06:52,474] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M04.o9271597 [2025-07-21 13:06:52,477] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M04.o9271597 [2025-07-21 13:06:52,477] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M04.o9271597 [2025-07-21 13:06:52,477] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M04.o9271597 [2025-07-21 13:06:52,482] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M04.o9271597 [2025-07-21 13:06:52,517] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M02.o9271595 [2025-07-21 13:06:52,521] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M02.o9271595 [2025-07-21 13:06:52,521] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M02.o9271595 [2025-07-21 13:06:52,521] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M02.o9271595 [2025-07-21 13:06:52,528] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE223518_WT_vs_NASH20_GSE223518_M02.o9271595 [2025-07-21 13:06:52,605] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2025-07-21 13:06:52,608] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2025-07-21 13:06:52,623] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2025-07-21 13:06:52,624] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2025-07-21 13:06:52,631] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2025-07-21 13:06:52,631] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2025-07-21 13:06:52,631] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2025-07-21 13:06:52,631] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2025-07-21 13:06:52,631] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2025-07-21 13:06:52,632] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2025-07-21 13:06:52,632] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2025-07-21 13:06:52,632] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2025-07-21 13:06:52,632] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2025-07-21 13:06:52,632] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2025-07-21 13:06:53,433] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-07-21 13:06:53,435] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-07-21 13:06:53,436] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-07-21 13:06:53,436] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-07-21 13:06:53,440] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-07-21 13:06:53,495] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-07-21 13:06:53,499] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-07-21 13:06:53,499] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-07-21 13:06:53,499] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-07-21 13:06:53,505] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-07-21 13:06:56,901] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2025-07-21 13:06:56,914] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2025-07-21 13:06:56,918] multiqc [DEBUG ] No samples found: custom_content [2025-07-21 13:06:56,928] multiqc [DEBUG ] No samples found: ccs [2025-07-21 13:06:56,956] multiqc [DEBUG ] No samples found: ngsderive [2025-07-21 13:06:56,966] multiqc [DEBUG ] No samples found: purple [2025-07-21 13:06:56,973] multiqc [DEBUG ] No samples found: conpair [2025-07-21 13:06:56,990] multiqc [DEBUG ] No samples found: lima [2025-07-21 13:06:57,018] multiqc [DEBUG ] No samples found: peddy [2025-07-21 13:06:57,028] multiqc [DEBUG ] No samples found: somalier [2025-07-21 13:06:57,052] multiqc [DEBUG ] No samples found: methylQA [2025-07-21 13:06:57,100] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2025-07-21 13:06:57,100] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2025-07-21 13:06:57,100] multiqc [DEBUG ] No samples found: mosdepth [2025-07-21 13:06:57,109] multiqc [DEBUG ] No samples found: phantompeakqualtools [2025-07-21 13:06:57,129] multiqc [DEBUG ] No samples found: qualimap [2025-07-21 13:06:57,168] multiqc [DEBUG ] No samples found: preseq [2025-07-21 13:06:57,187] multiqc [DEBUG ] No samples found: quast [2025-07-21 13:06:57,219] multiqc [DEBUG ] No samples found: qorts [2025-07-21 13:06:57,250] multiqc [DEBUG ] No samples found: rna_seqc [2025-07-21 13:06:57,272] multiqc [DEBUG ] No samples found: rockhopper [2025-07-21 13:06:57,309] multiqc [DEBUG ] No samples found: rsem [2025-07-21 13:06:57,371] multiqc.modules.rseqc.rseqc [INFO ] Found 8 infer_experiment reports [2025-07-21 13:06:57,409] multiqc [DEBUG ] No samples found: busco [2025-07-21 13:06:57,417] multiqc [DEBUG ] No samples found: bustools [2025-07-21 13:06:57,441] multiqc [DEBUG ] No samples found: goleft_indexcov [2025-07-21 13:06:57,473] multiqc [DEBUG ] No samples found: gffcompare [2025-07-21 13:06:57,482] multiqc [DEBUG ] No samples found: disambiguate [2025-07-21 13:06:57,517] multiqc [DEBUG ] No samples found: supernova [2025-07-21 13:06:57,616] multiqc [DEBUG ] No samples found: deeptools [2025-07-21 13:06:57,653] multiqc [DEBUG ] No samples found: sargasso [2025-07-21 13:06:57,683] multiqc [DEBUG ] No samples found: verifybamid [2025-07-21 13:06:57,716] multiqc [DEBUG ] No samples found: mirtrace [2025-07-21 13:06:57,726] multiqc [DEBUG ] No samples found: happy [2025-07-21 13:06:57,734] multiqc [DEBUG ] No samples found: mirtop [2025-07-21 13:06:57,767] multiqc [DEBUG ] No samples found: sambamba [2025-07-21 13:06:57,780] multiqc [DEBUG ] No samples found: homer [2025-07-21 13:06:57,810] multiqc [DEBUG ] No samples found: hops [2025-07-21 13:06:57,820] multiqc [DEBUG ] No samples found: macs2 [2025-07-21 13:06:57,828] multiqc [DEBUG ] No samples found: theta2 [2025-07-21 13:06:57,861] multiqc [DEBUG ] No samples found: snpeff [2025-07-21 13:06:57,898] multiqc [DEBUG ] No samples found: gatk [2025-07-21 13:06:57,907] multiqc [DEBUG ] No samples found: htseq [2025-07-21 13:06:57,920] multiqc [DEBUG ] No samples found: bcftools [2025-07-21 13:06:57,958] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE223518_M04_sorted [2025-07-21 13:06:57,961] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE223518_M07_sorted [2025-07-21 13:06:57,964] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE223518_M06_sorted [2025-07-21 13:06:57,967] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE223518_M05_sorted [2025-07-21 13:06:57,970] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE223518_M02_sorted [2025-07-21 13:06:57,972] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE223518_M01_sorted [2025-07-21 13:06:57,975] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE223518_M08_sorted [2025-07-21 13:06:57,978] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSE223518_M03_sorted [2025-07-21 13:06:57,978] multiqc.modules.featureCounts.feature_counts [INFO ] Found 8 reports [2025-07-21 13:06:58,051] multiqc [DEBUG ] No samples found: fgbio [2025-07-21 13:06:58,138] multiqc [DEBUG ] No samples found: dragen [2025-07-21 13:06:58,165] multiqc [DEBUG ] No samples found: dedup [2025-07-21 13:06:58,199] multiqc [DEBUG ] No samples found: damageprofiler [2025-07-21 13:06:58,430] multiqc [DEBUG ] No samples found: biobambam2 [2025-07-21 13:06:58,450] multiqc [DEBUG ] No samples found: jcvi [2025-07-21 13:06:58,460] multiqc [DEBUG ] No samples found: mtnucratio [2025-07-21 13:06:58,478] multiqc.modules.picard.picard [INFO ] Found 8 MarkDuplicates reports [2025-07-21 13:06:58,491] multiqc.modules.picard.picard [INFO ] Found 8 RnaSeqMetrics reports [2025-07-21 13:06:58,517] multiqc [DEBUG ] No samples found: vep [2025-07-21 13:06:58,552] multiqc [DEBUG ] No samples found: sentieon [2025-07-21 13:06:58,562] multiqc [DEBUG ] No samples found: prokka [2025-07-21 13:06:58,594] multiqc [DEBUG ] No samples found: qc3C [2025-07-21 13:06:58,633] multiqc [DEBUG ] No samples found: nanostat [2025-07-21 13:06:58,642] multiqc [DEBUG ] No samples found: samblaster [2025-07-21 13:06:58,736] multiqc.modules.samtools.samtools [INFO ] Found 24 flagstat reports [2025-07-21 13:06:58,761] multiqc [DEBUG ] No samples found: sexdeterrmine [2025-07-21 13:06:58,771] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2025-07-21 13:06:58,780] multiqc [DEBUG ] No samples found: bamtools [2025-07-21 13:06:58,787] multiqc [DEBUG ] No samples found: jellyfish [2025-07-21 13:06:58,798] multiqc [DEBUG ] No samples found: vcftools [2025-07-21 13:06:58,807] multiqc [DEBUG ] No samples found: longranger [2025-07-21 13:06:58,836] multiqc [DEBUG ] No samples found: stacks [2025-07-21 13:06:58,846] multiqc [DEBUG ] No samples found: varscan2 [2025-07-21 13:06:58,890] multiqc [DEBUG ] No samples found: snippy [2025-07-21 13:06:58,963] multiqc [DEBUG ] No samples found: bbmap [2025-07-21 13:06:59,003] multiqc [DEBUG ] No samples found: bismark [2025-07-21 13:06:59,045] multiqc [DEBUG ] No samples found: biscuit [2025-07-21 13:06:59,055] multiqc [DEBUG ] No samples found: hicexplorer [2025-07-21 13:06:59,086] multiqc [DEBUG ] No samples found: hicup [2025-07-21 13:06:59,112] multiqc [DEBUG ] No samples found: hicpro [2025-07-21 13:06:59,122] multiqc [DEBUG ] No samples found: salmon [2025-07-21 13:06:59,131] multiqc [DEBUG ] No samples found: kallisto [2025-07-21 13:06:59,165] multiqc [DEBUG ] No samples found: slamdunk [2025-07-21 13:07:00,045] multiqc.modules.star.star [INFO ] Found 8 reports and 8 gene count files [2025-07-21 13:07:00,053] multiqc [DEBUG ] No samples found: hisat2 [2025-07-21 13:07:00,074] multiqc [DEBUG ] No samples found: tophat [2025-07-21 13:07:00,105] multiqc [DEBUG ] No samples found: bowtie2 [2025-07-21 13:07:00,114] multiqc [DEBUG ] No samples found: bowtie1 [2025-07-21 13:07:00,151] multiqc [DEBUG ] No samples found: snpsplit [2025-07-21 13:07:00,186] multiqc [DEBUG ] No samples found: odgi [2025-07-21 13:07:00,198] multiqc [DEBUG ] No samples found: pangolin [2025-07-21 13:07:00,206] multiqc [DEBUG ] No samples found: kat [2025-07-21 13:07:00,212] multiqc [DEBUG ] No samples found: leehom [2025-07-21 13:07:00,239] multiqc [DEBUG ] No samples found: adapterRemoval [2025-07-21 13:07:00,248] multiqc [DEBUG ] No samples found: clipandmerge [2025-07-21 13:07:00,281] multiqc [DEBUG ] No samples found: cutadapt [2025-07-21 13:07:00,290] multiqc [DEBUG ] No samples found: flexbar [2025-07-21 13:07:00,301] multiqc [DEBUG ] No samples found: kaiju [2025-07-21 13:07:00,312] multiqc [DEBUG ] No samples found: kraken [2025-07-21 13:07:00,319] multiqc [DEBUG ] No samples found: malt [2025-07-21 13:07:00,360] multiqc [DEBUG ] No samples found: trimmomatic [2025-07-21 13:07:00,370] multiqc [DEBUG ] No samples found: sickle [2025-07-21 13:07:00,398] multiqc [DEBUG ] No samples found: skewer [2025-07-21 13:07:00,408] multiqc [DEBUG ] No samples found: sortmerna [2025-07-21 13:07:00,415] multiqc [DEBUG ] No samples found: biobloomtools [2025-07-21 13:07:00,448] multiqc [DEBUG ] No samples found: fastq_screen [2025-07-21 13:07:00,479] multiqc [DEBUG ] No samples found: afterqc [2025-07-21 13:07:00,506] multiqc [DEBUG ] No samples found: fastp [2025-07-21 13:07:00,655] multiqc.modules.fastqc.fastqc [INFO ] Found 8 reports [2025-07-21 13:07:00,656] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2025-07-21 13:07:00,736] multiqc [DEBUG ] No samples found: pychopper [2025-07-21 13:07:00,766] multiqc [DEBUG ] No samples found: pycoqc [2025-07-21 13:07:00,778] multiqc [DEBUG ] No samples found: minionqc [2025-07-21 13:07:00,802] multiqc [DEBUG ] No samples found: multivcfanalyzer [2025-07-21 13:07:00,825] multiqc [DEBUG ] No samples found: clusterflow [2025-07-21 13:07:00,848] multiqc [DEBUG ] No samples found: bcl2fastq [2025-07-21 13:07:00,858] multiqc [DEBUG ] No samples found: bclconvert [2025-07-21 13:07:00,889] multiqc [DEBUG ] No samples found: interop [2025-07-21 13:07:00,924] multiqc [DEBUG ] No samples found: ivar [2025-07-21 13:07:00,949] multiqc [DEBUG ] No samples found: flash [2025-07-21 13:07:00,961] multiqc [DEBUG ] No samples found: seqyclean [2025-07-21 13:07:00,968] multiqc [DEBUG ] No samples found: optitype [2025-07-21 13:07:00,995] multiqc [INFO ] Compressing plot data [2025-07-21 13:07:01,108] multiqc [INFO ] Report : multiqc_report.html [2025-07-21 13:07:01,108] multiqc [INFO ] Data : multiqc_data [2025-07-21 13:07:01,108] multiqc [DEBUG ] Moving data file from '/scratch/tmpokhqpjzu/multiqc_data' to '/projectnb/wax-dk/max/GSE223518_WT_vs_NASH20/Scripts/99_final_summary/GSE223518_WT_vs_NASH20_multiqc_report/multiqc_data' [2025-07-21 13:07:01,836] multiqc [INFO ] MultiQC complete