[2026-05-18 21:53:36,725] multiqc [DEBUG ] This is MultiQC v1.11 [2026-05-18 21:53:36,725] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2026-05-18 21:53:36,725] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2026-05-18 21:53:36,734] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2026-05-18 21:53:36,735] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/GSE217391_ESPR2_KO_liver_GalunLab/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2026-05-18 21:53:36,735] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2026-05-18 21:53:36,736] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2026-05-18 21:53:36,736] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/GSE217391_ESPR2_KO_liver_GalunLab/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/GSE217391_ESPR2_KO_liver_GalunLab/SAMPLES /projectnb2/wax-dk/max/GSE217391_ESPR2_KO_liver_GalunLab/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/GSE217391_ESPR2_KO_liver_GalunLab/Scripts/06_CollectMetrics/ [2026-05-18 21:53:37,231] multiqc [WARNING] MultiQC Version v1.35 now available! [2026-05-18 21:53:37,231] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/GSE217391_ESPR2_KO_liver_GalunLab/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/GSE217391_ESPR2_KO_liver_GalunLab/SAMPLES /projectnb2/wax-dk/max/GSE217391_ESPR2_KO_liver_GalunLab/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/GSE217391_ESPR2_KO_liver_GalunLab/Scripts/06_CollectMetrics/ [2026-05-18 21:53:37,231] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/GSE217391_ESPR2_KO_liver_GalunLab/Scripts/99_final_summary/GSE217391_ESPR2_KO_liver_GalunLab_multiqc_report [2026-05-18 21:53:37,232] multiqc [DEBUG ] Template : default [2026-05-18 21:53:37,232] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2026-05-18 21:53:37,232] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2026-05-18 21:53:37,250] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpr9il2pn0 [2026-05-18 21:53:37,561] multiqc [INFO ] Search path : /projectnb/wax-dk/max/GSE217391_ESPR2_KO_liver_GalunLab/SAMPLES [2026-05-18 21:53:37,561] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/GSE217391_ESPR2_KO_liver_GalunLab/Scripts/03_FASTQC [2026-05-18 21:53:37,561] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/GSE217391_ESPR2_KO_liver_GalunLab/Scripts/06_CollectMetrics [2026-05-18 21:53:37,629] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR22206369_1.fastq.gz [2026-05-18 21:53:37,629] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR22206369_2.fastq.gz [2026-05-18 21:53:37,811] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM6716500_M05_SJ.out.tab [2026-05-18 21:53:37,815] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM6716500_M05_SJ.out.tab [2026-05-18 21:53:37,816] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM6716500_M05_SJ.out.tab [2026-05-18 21:53:37,816] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM6716500_M05_SJ.out.tab [2026-05-18 21:53:37,822] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSM6716500_M05_SJ.out.tab [2026-05-18 21:53:37,822] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM6716500_M05_SJ.out.tab [2026-05-18 21:53:37,822] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM6716500_M05_SJ.out.tab [2026-05-18 21:53:37,822] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM6716500_M05_SJ.out.tab [2026-05-18 21:53:37,823] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM6716500_M05_SJ.out.tab [2026-05-18 21:53:37,823] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM6716500_M05_SJ.out.tab [2026-05-18 21:53:37,823] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM6716500_M05_SJ.out.tab [2026-05-18 21:53:37,823] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM6716500_M05_SJ.out.tab [2026-05-18 21:53:37,823] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: GSM6716500_M05_SJ.out.tab [2026-05-18 21:53:37,823] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSM6716500_M05_SJ.out.tab [2026-05-18 21:53:40,498] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:40,502] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:40,502] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:40,503] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:40,508] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:40,509] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:40,509] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:40,509] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:40,509] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:40,509] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:40,509] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:40,509] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:40,526] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:41,475] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:41,481] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:41,482] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:41,482] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:41,490] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:41,490] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:41,490] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:41,490] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:41,490] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:41,490] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:41,490] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:41,490] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:41,517] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSM6716500_M05_featureCounts.out [2026-05-18 21:53:42,490] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR22206370_1.fastq.gz [2026-05-18 21:53:42,491] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR22206370_2.fastq.gz [2026-05-18 21:53:42,556] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM6716499_M04_SJ.out.tab [2026-05-18 21:53:42,559] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM6716499_M04_SJ.out.tab [2026-05-18 21:53:42,559] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM6716499_M04_SJ.out.tab [2026-05-18 21:53:42,559] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM6716499_M04_SJ.out.tab [2026-05-18 21:53:42,564] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSM6716499_M04_SJ.out.tab [2026-05-18 21:53:42,564] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM6716499_M04_SJ.out.tab [2026-05-18 21:53:42,564] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM6716499_M04_SJ.out.tab [2026-05-18 21:53:42,564] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM6716499_M04_SJ.out.tab [2026-05-18 21:53:42,564] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM6716499_M04_SJ.out.tab [2026-05-18 21:53:42,564] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM6716499_M04_SJ.out.tab [2026-05-18 21:53:42,564] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM6716499_M04_SJ.out.tab [2026-05-18 21:53:42,564] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM6716499_M04_SJ.out.tab [2026-05-18 21:53:42,564] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: GSM6716499_M04_SJ.out.tab [2026-05-18 21:53:42,564] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSM6716499_M04_SJ.out.tab [2026-05-18 21:53:45,250] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:45,253] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:45,254] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:45,254] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:45,261] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:45,261] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:45,262] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:45,262] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:45,262] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:45,262] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:45,262] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:45,262] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:45,285] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:46,219] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:46,223] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:46,223] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:46,223] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:46,228] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:46,228] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:46,229] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:46,229] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:46,229] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:46,229] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:46,229] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:46,229] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:46,248] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSM6716499_M04_featureCounts.out [2026-05-18 21:53:47,211] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR22206373_1.fastq.gz [2026-05-18 21:53:47,211] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR22206373_2.fastq.gz [2026-05-18 21:53:47,304] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM6716496_M01_SJ.out.tab [2026-05-18 21:53:47,308] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM6716496_M01_SJ.out.tab [2026-05-18 21:53:47,308] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM6716496_M01_SJ.out.tab [2026-05-18 21:53:47,308] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM6716496_M01_SJ.out.tab [2026-05-18 21:53:47,312] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSM6716496_M01_SJ.out.tab [2026-05-18 21:53:47,313] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM6716496_M01_SJ.out.tab [2026-05-18 21:53:47,313] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM6716496_M01_SJ.out.tab [2026-05-18 21:53:47,313] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM6716496_M01_SJ.out.tab [2026-05-18 21:53:47,313] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM6716496_M01_SJ.out.tab [2026-05-18 21:53:47,313] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM6716496_M01_SJ.out.tab [2026-05-18 21:53:47,313] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM6716496_M01_SJ.out.tab [2026-05-18 21:53:47,313] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM6716496_M01_SJ.out.tab [2026-05-18 21:53:47,313] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: GSM6716496_M01_SJ.out.tab [2026-05-18 21:53:47,313] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSM6716496_M01_SJ.out.tab [2026-05-18 21:53:50,005] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:50,009] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:50,010] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:50,010] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:50,017] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:50,017] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:50,017] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:50,017] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:50,017] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:50,018] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:50,018] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:50,018] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:50,038] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:50,989] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:50,992] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:50,992] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:50,992] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:50,998] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:50,998] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:50,998] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:50,998] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:50,998] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:50,998] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:50,998] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:50,998] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:51,017] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSM6716496_M01_featureCounts.out [2026-05-18 21:53:51,966] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR22206371_2.fastq.gz [2026-05-18 21:53:51,966] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR22206371_1.fastq.gz [2026-05-18 21:53:52,127] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM6716498_M03_SJ.out.tab [2026-05-18 21:53:52,131] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM6716498_M03_SJ.out.tab [2026-05-18 21:53:52,131] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM6716498_M03_SJ.out.tab [2026-05-18 21:53:52,131] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM6716498_M03_SJ.out.tab [2026-05-18 21:53:52,137] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSM6716498_M03_SJ.out.tab [2026-05-18 21:53:52,137] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM6716498_M03_SJ.out.tab [2026-05-18 21:53:52,137] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM6716498_M03_SJ.out.tab [2026-05-18 21:53:52,137] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM6716498_M03_SJ.out.tab [2026-05-18 21:53:52,137] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM6716498_M03_SJ.out.tab [2026-05-18 21:53:52,137] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM6716498_M03_SJ.out.tab [2026-05-18 21:53:52,137] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM6716498_M03_SJ.out.tab [2026-05-18 21:53:52,137] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM6716498_M03_SJ.out.tab [2026-05-18 21:53:52,137] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: GSM6716498_M03_SJ.out.tab [2026-05-18 21:53:52,137] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSM6716498_M03_SJ.out.tab [2026-05-18 21:53:54,791] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:54,795] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:54,796] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:54,796] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:54,801] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:54,801] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:54,802] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:54,802] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:54,802] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:54,802] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:54,802] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:54,802] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:54,821] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:55,757] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:55,761] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:55,761] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:55,761] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:55,767] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:55,767] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:55,767] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:55,767] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:55,767] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:55,767] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:55,767] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:55,767] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:55,785] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSM6716498_M03_featureCounts.out [2026-05-18 21:53:56,701] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR22206368_2.fastq.gz [2026-05-18 21:53:56,701] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR22206368_1.fastq.gz [2026-05-18 21:53:56,830] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM6716501_M06_SJ.out.tab [2026-05-18 21:53:56,833] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM6716501_M06_SJ.out.tab [2026-05-18 21:53:56,833] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM6716501_M06_SJ.out.tab [2026-05-18 21:53:56,833] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM6716501_M06_SJ.out.tab [2026-05-18 21:53:56,839] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSM6716501_M06_SJ.out.tab [2026-05-18 21:53:56,839] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM6716501_M06_SJ.out.tab [2026-05-18 21:53:56,839] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM6716501_M06_SJ.out.tab [2026-05-18 21:53:56,839] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM6716501_M06_SJ.out.tab [2026-05-18 21:53:56,839] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM6716501_M06_SJ.out.tab [2026-05-18 21:53:56,839] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM6716501_M06_SJ.out.tab [2026-05-18 21:53:56,839] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM6716501_M06_SJ.out.tab [2026-05-18 21:53:56,839] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM6716501_M06_SJ.out.tab [2026-05-18 21:53:56,839] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: GSM6716501_M06_SJ.out.tab [2026-05-18 21:53:56,839] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSM6716501_M06_SJ.out.tab [2026-05-18 21:53:59,549] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:53:59,551] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:53:59,567] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:53:59,567] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:53:59,572] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:53:59,572] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:53:59,572] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:53:59,573] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:53:59,573] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:53:59,573] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:53:59,573] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:53:59,573] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:53:59,596] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:54:00,565] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:54:00,568] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:54:00,569] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:54:00,569] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:54:00,573] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:54:00,573] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:54:00,573] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:54:00,574] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:54:00,574] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:54:00,574] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:54:00,574] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:54:00,574] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:54:00,592] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSM6716501_M06_featureCounts.out [2026-05-18 21:54:01,554] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR22206367_1.fastq.gz [2026-05-18 21:54:01,554] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR22206367_2.fastq.gz [2026-05-18 21:54:01,656] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM6716502_M07_SJ.out.tab [2026-05-18 21:54:01,659] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM6716502_M07_SJ.out.tab [2026-05-18 21:54:01,660] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM6716502_M07_SJ.out.tab [2026-05-18 21:54:01,660] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM6716502_M07_SJ.out.tab [2026-05-18 21:54:01,665] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSM6716502_M07_SJ.out.tab [2026-05-18 21:54:01,665] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM6716502_M07_SJ.out.tab [2026-05-18 21:54:01,665] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM6716502_M07_SJ.out.tab [2026-05-18 21:54:01,665] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM6716502_M07_SJ.out.tab [2026-05-18 21:54:01,665] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM6716502_M07_SJ.out.tab [2026-05-18 21:54:01,665] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM6716502_M07_SJ.out.tab [2026-05-18 21:54:01,665] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM6716502_M07_SJ.out.tab [2026-05-18 21:54:01,665] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM6716502_M07_SJ.out.tab [2026-05-18 21:54:01,665] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: GSM6716502_M07_SJ.out.tab [2026-05-18 21:54:01,665] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSM6716502_M07_SJ.out.tab [2026-05-18 21:54:04,406] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:04,410] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:04,411] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:04,411] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:04,418] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:04,418] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:04,418] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:04,418] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:04,418] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:04,418] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:04,418] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:04,418] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:04,439] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:05,397] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:05,400] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:05,401] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:05,401] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:05,406] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:05,406] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:05,406] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:05,406] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:05,406] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:05,406] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:05,406] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:05,406] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:05,426] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSM6716502_M07_featureCounts.out [2026-05-18 21:54:06,377] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR22206372_2.fastq.gz [2026-05-18 21:54:06,377] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR22206372_1.fastq.gz [2026-05-18 21:54:06,499] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: GSM6716497_M02_SJ.out.tab [2026-05-18 21:54:06,503] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: GSM6716497_M02_SJ.out.tab [2026-05-18 21:54:06,503] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: GSM6716497_M02_SJ.out.tab [2026-05-18 21:54:06,503] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: GSM6716497_M02_SJ.out.tab [2026-05-18 21:54:06,509] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: GSM6716497_M02_SJ.out.tab [2026-05-18 21:54:06,509] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: GSM6716497_M02_SJ.out.tab [2026-05-18 21:54:06,509] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: GSM6716497_M02_SJ.out.tab [2026-05-18 21:54:06,509] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM6716497_M02_SJ.out.tab [2026-05-18 21:54:06,509] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM6716497_M02_SJ.out.tab [2026-05-18 21:54:06,509] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM6716497_M02_SJ.out.tab [2026-05-18 21:54:06,509] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM6716497_M02_SJ.out.tab [2026-05-18 21:54:06,509] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM6716497_M02_SJ.out.tab [2026-05-18 21:54:06,509] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: GSM6716497_M02_SJ.out.tab [2026-05-18 21:54:06,509] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: GSM6716497_M02_SJ.out.tab [2026-05-18 21:54:09,180] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 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limit: GSM6716497_M02_featureCounts.out [2026-05-18 21:54:10,165] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: GSM6716497_M02_featureCounts.out [2026-05-18 21:54:10,165] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: GSM6716497_M02_featureCounts.out [2026-05-18 21:54:10,165] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: GSM6716497_M02_featureCounts.out [2026-05-18 21:54:10,165] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: GSM6716497_M02_featureCounts.out [2026-05-18 21:54:10,165] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: GSM6716497_M02_featureCounts.out [2026-05-18 21:54:10,184] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: 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Step_03_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716499_M04.o5649956 [2026-05-18 21:54:11,258] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716499_M04.o5649956 [2026-05-18 21:54:11,262] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716499_M04.o5649956 [2026-05-18 21:54:11,280] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716501_M06.o5649958 [2026-05-18 21:54:11,284] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716501_M06.o5649958 [2026-05-18 21:54:11,290] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716501_M06.o5649958 [2026-05-18 21:54:11,333] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716497_M02.o5649954 [2026-05-18 21:54:11,336] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716497_M02.o5649954 [2026-05-18 21:54:11,340] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716497_M02.o5649954 [2026-05-18 21:54:11,355] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716498_M03.o5649955 [2026-05-18 21:54:11,358] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 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[2026-05-18 21:54:11,729] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:11,729] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:11,737] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:11,738] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:11,798] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:11,803] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:11,803] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:11,803] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:11,811] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:11,811] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:11,869] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:11,874] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:11,874] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:11,874] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:11,882] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:11,882] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:11,939] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:11,943] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:11,943] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:11,943] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:11,951] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:11,951] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:12,011] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2026-05-18 21:54:12,014] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2026-05-18 21:54:12,015] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2026-05-18 21:54:12,015] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2026-05-18 21:54:12,020] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2026-05-18 21:54:12,020] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2026-05-18 21:54:12,130] multiqc [DEBUG ] File ignored by 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[DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:13,098] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:13,164] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:13,168] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:13,169] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:13,169] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:13,177] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:13,177] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:13,234] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2026-05-18 21:54:13,237] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2026-05-18 21:54:13,238] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2026-05-18 21:54:13,238] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2026-05-18 21:54:13,245] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2026-05-18 21:54:13,245] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2026-05-18 21:54:13,352] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded 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pattern filesize limit: fastqc_report.html [2026-05-18 21:54:13,428] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:13,428] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:13,438] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:13,439] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-05-18 21:54:13,504] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-05-18 21:54:13,509] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-05-18 21:54:13,509] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-05-18 21:54:13,509] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-05-18 21:54:13,518] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-05-18 21:54:13,534] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2026-05-18 21:54:13,538] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2026-05-18 21:54:13,546] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2026-05-18 21:54:13,566] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-05-18 21:54:13,568] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-05-18 21:54:13,573] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-05-18 21:54:13,590] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-05-18 21:54:13,594] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-05-18 21:54:13,625] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716499_M04.o5651195 [2026-05-18 21:54:13,627] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716499_M04.o5651195 [2026-05-18 21:54:13,628] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716499_M04.o5651195 [2026-05-18 21:54:13,628] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716499_M04.o5651195 [2026-05-18 21:54:13,632] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716499_M04.o5651195 [2026-05-18 21:54:13,632] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716499_M04.o5651195 [2026-05-18 21:54:13,688] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716501_M06.o5651197 [2026-05-18 21:54:13,692] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716501_M06.o5651197 [2026-05-18 21:54:13,693] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716501_M06.o5651197 [2026-05-18 21:54:13,693] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716501_M06.o5651197 [2026-05-18 21:54:13,699] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716501_M06.o5651197 [2026-05-18 21:54:13,699] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716501_M06.o5651197 [2026-05-18 21:54:13,756] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716502_M07.o5651198 [2026-05-18 21:54:13,759] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716502_M07.o5651198 [2026-05-18 21:54:13,759] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716502_M07.o5651198 [2026-05-18 21:54:13,759] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716502_M07.o5651198 [2026-05-18 21:54:13,764] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716502_M07.o5651198 [2026-05-18 21:54:13,764] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716502_M07.o5651198 [2026-05-18 21:54:13,828] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716498_M03.o5651194 [2026-05-18 21:54:13,831] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716498_M03.o5651194 [2026-05-18 21:54:13,831] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716498_M03.o5651194 [2026-05-18 21:54:13,831] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716498_M03.o5651194 [2026-05-18 21:54:13,837] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716498_M03.o5651194 [2026-05-18 21:54:13,837] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716498_M03.o5651194 [2026-05-18 21:54:13,885] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716500_M05.o5651196 [2026-05-18 21:54:13,887] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716500_M05.o5651196 [2026-05-18 21:54:13,888] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716500_M05.o5651196 [2026-05-18 21:54:13,888] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716500_M05.o5651196 [2026-05-18 21:54:13,893] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716500_M05.o5651196 [2026-05-18 21:54:13,893] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716500_M05.o5651196 [2026-05-18 21:54:13,979] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716497_M02.o5651193 [2026-05-18 21:54:13,982] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716497_M02.o5651193 [2026-05-18 21:54:13,983] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716497_M02.o5651193 [2026-05-18 21:54:13,983] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716497_M02.o5651193 [2026-05-18 21:54:13,988] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716497_M02.o5651193 [2026-05-18 21:54:13,988] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716497_M02.o5651193 [2026-05-18 21:54:14,065] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716496_M01.o5651192 [2026-05-18 21:54:14,069] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716496_M01.o5651192 [2026-05-18 21:54:14,069] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716496_M01.o5651192 [2026-05-18 21:54:14,069] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716496_M01.o5651192 [2026-05-18 21:54:14,074] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716496_M01.o5651192 [2026-05-18 21:54:14,075] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_GSE217391_ESPR2_KO_liver_GalunLab_GSM6716496_M01.o5651192 [2026-05-18 21:54:14,171] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2026-05-18 21:54:14,200] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2026-05-18 21:54:14,203] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2026-05-18 21:54:14,204] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2026-05-18 21:54:14,204] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2026-05-18 21:54:14,213] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2026-05-18 21:54:14,213] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2026-05-18 21:54:14,213] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2026-05-18 21:54:14,213] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2026-05-18 21:54:14,213] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2026-05-18 21:54:14,213] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2026-05-18 21:54:14,213] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2026-05-18 21:54:14,213] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2026-05-18 21:54:14,213] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2026-05-18 21:54:14,214] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2026-05-18 21:54:15,067] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-05-18 21:54:15,070] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-05-18 21:54:15,071] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-05-18 21:54:15,071] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-05-18 21:54:15,075] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-05-18 21:54:15,121] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-05-18 21:54:15,125] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-05-18 21:54:15,126] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-05-18 21:54:15,126] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-05-18 21:54:15,133] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-05-18 21:54:17,899] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2026-05-18 21:54:17,917] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2026-05-18 21:54:17,920] multiqc [DEBUG ] No samples found: custom_content [2026-05-18 21:54:17,937] multiqc [DEBUG ] No samples found: ccs [2026-05-18 21:54:17,956] multiqc [DEBUG ] No samples found: ngsderive [2026-05-18 21:54:17,982] multiqc [DEBUG ] No samples found: purple [2026-05-18 21:54:17,992] multiqc [DEBUG ] No samples found: conpair [2026-05-18 21:54:18,015] multiqc [DEBUG ] No samples found: lima [2026-05-18 21:54:18,047] multiqc [DEBUG ] No samples found: peddy [2026-05-18 21:54:18,065] multiqc [DEBUG ] No samples found: somalier [2026-05-18 21:54:18,081] multiqc [DEBUG ] No samples found: methylQA [2026-05-18 21:54:18,111] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2026-05-18 21:54:18,111] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2026-05-18 21:54:18,112] multiqc [DEBUG ] No samples found: mosdepth [2026-05-18 21:54:18,121] multiqc [DEBUG ] No samples found: phantompeakqualtools [2026-05-18 21:54:18,137] multiqc [DEBUG ] No samples found: qualimap [2026-05-18 21:54:18,160] multiqc [DEBUG ] No samples found: preseq [2026-05-18 21:54:18,178] multiqc [DEBUG ] No samples found: quast [2026-05-18 21:54:18,198] multiqc [DEBUG ] No samples found: qorts [2026-05-18 21:54:18,216] multiqc [DEBUG ] No samples found: rna_seqc [2026-05-18 21:54:18,232] multiqc [DEBUG ] No samples found: rockhopper [2026-05-18 21:54:18,252] multiqc [DEBUG ] No samples found: rsem [2026-05-18 21:54:18,297] multiqc.modules.rseqc.rseqc [INFO ] Found 7 infer_experiment reports [2026-05-18 21:54:18,345] multiqc [DEBUG ] No samples found: busco [2026-05-18 21:54:18,366] multiqc [DEBUG ] No samples found: bustools [2026-05-18 21:54:18,396] multiqc [DEBUG ] No samples found: goleft_indexcov [2026-05-18 21:54:18,430] multiqc [DEBUG ] No samples found: gffcompare [2026-05-18 21:54:18,440] multiqc [DEBUG ] No samples found: disambiguate [2026-05-18 21:54:18,460] multiqc [DEBUG ] No samples found: supernova [2026-05-18 21:54:18,556] multiqc [DEBUG ] No samples found: deeptools [2026-05-18 21:54:18,577] multiqc [DEBUG ] No samples found: sargasso [2026-05-18 21:54:18,598] multiqc [DEBUG ] No samples found: verifybamid [2026-05-18 21:54:18,624] multiqc [DEBUG ] No samples found: mirtrace [2026-05-18 21:54:18,649] multiqc [DEBUG ] No samples found: happy [2026-05-18 21:54:18,674] multiqc [DEBUG ] No samples found: mirtop [2026-05-18 21:54:18,695] multiqc [DEBUG ] No samples found: sambamba [2026-05-18 21:54:18,722] multiqc [DEBUG ] No samples found: homer [2026-05-18 21:54:18,743] multiqc [DEBUG ] No samples found: hops [2026-05-18 21:54:18,756] multiqc [DEBUG ] No samples found: macs2 [2026-05-18 21:54:18,764] multiqc [DEBUG ] No samples found: theta2 [2026-05-18 21:54:18,790] multiqc [DEBUG ] No samples found: snpeff [2026-05-18 21:54:18,833] multiqc [DEBUG ] No samples found: gatk [2026-05-18 21:54:18,842] multiqc [DEBUG ] No samples found: htseq [2026-05-18 21:54:18,868] multiqc [DEBUG ] No samples found: bcftools [2026-05-18 21:54:18,888] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSM6716500_M05_sorted [2026-05-18 21:54:18,890] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSM6716499_M04_sorted [2026-05-18 21:54:18,891] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSM6716496_M01_sorted [2026-05-18 21:54:18,892] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSM6716498_M03_sorted [2026-05-18 21:54:18,894] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSM6716501_M06_sorted [2026-05-18 21:54:18,895] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSM6716502_M07_sorted [2026-05-18 21:54:18,896] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: GSM6716497_M02_sorted [2026-05-18 21:54:18,896] multiqc.modules.featureCounts.feature_counts [INFO ] Found 7 reports [2026-05-18 21:54:18,955] multiqc [DEBUG ] No samples found: fgbio [2026-05-18 21:54:19,055] multiqc [DEBUG ] No samples found: dragen [2026-05-18 21:54:19,076] multiqc [DEBUG ] No samples found: dedup [2026-05-18 21:54:19,094] multiqc [DEBUG ] No samples found: damageprofiler [2026-05-18 21:54:19,293] multiqc [DEBUG ] No samples found: biobambam2 [2026-05-18 21:54:19,318] multiqc [DEBUG ] No samples found: jcvi [2026-05-18 21:54:19,328] multiqc [DEBUG ] No samples found: mtnucratio [2026-05-18 21:54:19,340] multiqc [DEBUG ] No samples found: picard [2026-05-18 21:54:19,355] multiqc [DEBUG ] No samples found: vep [2026-05-18 21:54:19,396] multiqc [DEBUG ] No samples found: sentieon [2026-05-18 21:54:19,419] multiqc [DEBUG ] No samples found: prokka [2026-05-18 21:54:19,439] multiqc [DEBUG ] No samples found: qc3C [2026-05-18 21:54:19,460] multiqc [DEBUG ] No samples found: nanostat [2026-05-18 21:54:19,470] multiqc [DEBUG ] No samples found: samblaster [2026-05-18 21:54:19,549] multiqc.modules.samtools.samtools [INFO ] Found 21 flagstat reports [2026-05-18 21:54:19,566] multiqc [DEBUG ] No samples found: sexdeterrmine [2026-05-18 21:54:19,575] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2026-05-18 21:54:19,583] multiqc [DEBUG ] No samples found: bamtools [2026-05-18 21:54:19,589] multiqc [DEBUG ] No samples found: jellyfish [2026-05-18 21:54:19,599] multiqc [DEBUG ] No samples found: vcftools [2026-05-18 21:54:19,619] multiqc [DEBUG ] No samples found: longranger [2026-05-18 21:54:19,646] multiqc [DEBUG ] No samples found: stacks [2026-05-18 21:54:19,667] multiqc [DEBUG ] No samples found: varscan2 [2026-05-18 21:54:19,689] multiqc [DEBUG ] No samples found: snippy [2026-05-18 21:54:19,737] multiqc [DEBUG ] No samples found: bbmap [2026-05-18 21:54:19,755] multiqc [DEBUG ] No samples found: bismark [2026-05-18 21:54:19,778] multiqc [DEBUG ] No samples found: biscuit [2026-05-18 21:54:19,801] multiqc [DEBUG ] No samples found: hicexplorer [2026-05-18 21:54:19,816] multiqc [DEBUG ] No samples found: hicup [2026-05-18 21:54:19,841] multiqc [DEBUG ] No samples found: hicpro [2026-05-18 21:54:19,850] multiqc [DEBUG ] No samples found: salmon [2026-05-18 21:54:19,871] multiqc [DEBUG ] No samples found: kallisto [2026-05-18 21:54:19,904] multiqc [DEBUG ] No samples found: slamdunk [2026-05-18 21:54:20,692] multiqc.modules.star.star [INFO ] Found 7 reports and 7 gene count files [2026-05-18 21:54:20,708] multiqc [DEBUG ] No samples found: hisat2 [2026-05-18 21:54:20,727] multiqc [DEBUG ] No samples found: tophat [2026-05-18 21:54:20,752] multiqc [DEBUG ] No samples found: bowtie2 [2026-05-18 21:54:20,777] multiqc [DEBUG ] No samples found: bowtie1 [2026-05-18 21:54:20,802] multiqc [DEBUG ] No samples found: snpsplit [2026-05-18 21:54:20,825] multiqc [DEBUG ] No samples found: odgi [2026-05-18 21:54:20,851] multiqc [DEBUG ] No samples found: pangolin [2026-05-18 21:54:20,859] multiqc [DEBUG ] No samples found: kat [2026-05-18 21:54:20,868] multiqc [DEBUG ] No samples found: leehom [2026-05-18 21:54:20,887] multiqc [DEBUG ] No samples found: adapterRemoval [2026-05-18 21:54:20,894] multiqc [DEBUG ] No samples found: clipandmerge [2026-05-18 21:54:20,917] multiqc [DEBUG ] No samples found: cutadapt [2026-05-18 21:54:20,926] multiqc [DEBUG ] No samples found: flexbar [2026-05-18 21:54:20,939] multiqc [DEBUG ] No samples found: kaiju [2026-05-18 21:54:20,957] multiqc [DEBUG ] No samples found: kraken [2026-05-18 21:54:20,975] multiqc [DEBUG ] No samples found: malt [2026-05-18 21:54:20,997] multiqc [DEBUG ] No samples found: trimmomatic [2026-05-18 21:54:21,025] multiqc [DEBUG ] No samples found: sickle [2026-05-18 21:54:21,050] multiqc [DEBUG ] No samples found: skewer [2026-05-18 21:54:21,060] multiqc [DEBUG ] No samples found: sortmerna [2026-05-18 21:54:21,067] multiqc [DEBUG ] No samples found: biobloomtools [2026-05-18 21:54:21,087] multiqc [DEBUG ] No samples found: fastq_screen [2026-05-18 21:54:21,113] multiqc [DEBUG ] No samples found: afterqc [2026-05-18 21:54:21,164] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-18 21:54:21,175] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-18 21:54:21,197] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-18 21:54:21,212] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-18 21:54:21,228] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-18 21:54:21,252] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-18 21:54:21,280] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-18 21:54:21,282] multiqc.modules.fastp.fastp [INFO ] Found 7 reports [2026-05-18 21:54:21,918] multiqc.modules.fastqc.fastqc [INFO ] Found 14 reports [2026-05-18 21:54:21,919] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2026-05-18 21:54:22,327] multiqc [DEBUG ] No samples found: pychopper [2026-05-18 21:54:22,343] multiqc [DEBUG ] No samples found: pycoqc [2026-05-18 21:54:22,361] multiqc [DEBUG ] No samples found: minionqc [2026-05-18 21:54:22,378] multiqc [DEBUG ] No samples found: multivcfanalyzer [2026-05-18 21:54:22,397] multiqc [DEBUG ] No samples found: clusterflow [2026-05-18 21:54:22,420] multiqc [DEBUG ] No samples found: bcl2fastq [2026-05-18 21:54:22,444] multiqc [DEBUG ] No samples found: bclconvert [2026-05-18 21:54:22,465] multiqc [DEBUG ] No samples found: interop [2026-05-18 21:54:22,486] multiqc [DEBUG ] No samples found: ivar [2026-05-18 21:54:22,502] multiqc [DEBUG ] No samples found: flash [2026-05-18 21:54:22,525] multiqc [DEBUG ] No samples found: seqyclean [2026-05-18 21:54:22,535] multiqc [DEBUG ] No samples found: optitype [2026-05-18 21:54:22,571] multiqc [INFO ] Compressing plot data [2026-05-18 21:54:23,082] multiqc [INFO ] Report : multiqc_report.html [2026-05-18 21:54:23,082] multiqc [INFO ] Data : multiqc_data [2026-05-18 21:54:23,082] multiqc [DEBUG ] Moving data file from '/scratch/tmpr9il2pn0/multiqc_data' to '/projectnb/wax-dk/max/GSE217391_ESPR2_KO_liver_GalunLab/Scripts/99_final_summary/GSE217391_ESPR2_KO_liver_GalunLab_multiqc_report/multiqc_data' [2026-05-18 21:54:23,837] multiqc [INFO ] MultiQC complete