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"/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M10/aligner/GSE147609_M10_statistics_for_all_accepted_reads.txt", "GSE147609_M10_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M10/aligner/GSE147609_M10_statistics_for_primary_unique_reads.txt", "GSE147609_M10_statistics_for_primary_reads": "/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M10/aligner/GSE147609_M10_statistics_for_primary_reads.txt" } }, "STAR": { "SummaryLog": { "GSE147609_M8_GSE147609_M8": "/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M8/aligner/GSE147609_M8_GSE147609_M8_Log.final.out", "GSE147609_M1_GSE147609_M1": "/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M1/aligner/GSE147609_M1_GSE147609_M1_Log.final.out", "GSE147609_M7_GSE147609_M7": "/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M7/aligner/GSE147609_M7_GSE147609_M7_Log.final.out", "GSE147609_M9_GSE147609_M9": "/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M9/aligner/GSE147609_M9_GSE147609_M9_Log.final.out", "GSE147609_M4_GSE147609_M4": "/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M4/aligner/GSE147609_M4_GSE147609_M4_Log.final.out", "GSE147609_M2_GSE147609_M2": "/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M2/aligner/GSE147609_M2_GSE147609_M2_Log.final.out", "GSE147609_M5_GSE147609_M5": "/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M5/aligner/GSE147609_M5_GSE147609_M5_Log.final.out", "GSE147609_M3_GSE147609_M3": "/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M3/aligner/GSE147609_M3_GSE147609_M3_Log.final.out", "GSE147609_M11_GSE147609_M11": "/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/SAMPLES/GSE147609_M11/aligner/GSE147609_M11_GSE147609_M11_Log.final.out", "GSE147609_M6_GSE147609_M6": 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"/projectnb/wax-dk/max/RK_grant_proposal/GSE147609/Scripts/03_FASTQC/Job_Summary/GSE147609_M3_FASTQC/GSM4435404_pass_fastqc.zip" } } }, "report_general_stats_data": [ { "GSE147609_M8_sorted": { "Total": 11287993, "Assigned": 10430197, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 857796, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 92.40081031233808 }, "GSE147609_M1_sorted": { "Total": 10048982, "Assigned": 9244047, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 804935, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 91.98988514458479 }, "GSE147609_M7_sorted": { "Total": 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"mismatch_rate": 0.18, "deletion_rate": 0.01, "deletion_length": 1.68, "insertion_rate": 0.0, "insertion_length": 1.23, "multimapped": 1771592.0, "multimapped_percent": 14.52, "multimapped_toomany": 305100.0, "multimapped_toomany_percent": 2.5, "unmapped_mismatches_percent": 0.0, "unmapped_tooshort_percent": 0.5, "unmapped_other_percent": 0.26, "unmapped_mismatches": 0, "unmapped_tooshort": 60839, "unmapped_other": 31637 }, "GSE147609_M5_GSE147609_M5": { "total_reads": 11470778.0, "avg_input_read_length": 74.0, "uniquely_mapped": 9925814.0, "uniquely_mapped_percent": 86.53, "avg_mapped_read_length": 74.11, "num_splices": 2779571.0, "num_annotated_splices": 2718337.0, "num_GTAG_splices": 2759974.0, "num_GCAG_splices": 17608.0, "num_ATAC_splices": 1114.0, "num_noncanonical_splices": 875.0, "mismatch_rate": 0.2, "deletion_rate": 0.01, "deletion_length": 1.74, "insertion_rate": 0.0, "insertion_length": 1.24, "multimapped": 1290899.0, "multimapped_percent": 11.25, "multimapped_toomany": 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62365, "unmapped_other": 29935 }, "GSE147609_M11_GSE147609_M11": { "total_reads": 11349188.0, "avg_input_read_length": 74.0, "uniquely_mapped": 9515246.0, "uniquely_mapped_percent": 83.84, "avg_mapped_read_length": 74.08, "num_splices": 2664817.0, "num_annotated_splices": 2607968.0, "num_GTAG_splices": 2646367.0, "num_GCAG_splices": 16517.0, "num_ATAC_splices": 1128.0, "num_noncanonical_splices": 805.0, "mismatch_rate": 0.19, "deletion_rate": 0.01, "deletion_length": 1.8, "insertion_rate": 0.0, "insertion_length": 1.25, "multimapped": 1499130.0, "multimapped_percent": 13.21, "multimapped_toomany": 202541.0, "multimapped_toomany_percent": 1.78, "unmapped_mismatches_percent": 0.0, "unmapped_tooshort_percent": 0.95, "unmapped_other_percent": 0.21, "unmapped_mismatches": 0, "unmapped_tooshort": 108325, "unmapped_other": 23946 }, "GSE147609_M6_GSE147609_M6": { "total_reads": 11239125.0, "avg_input_read_length": 74.0, "uniquely_mapped": 9785145.0, "uniquely_mapped_percent": 87.06, 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