{ "report_data_sources": { "RSeQC": { "infer_experiment": { "G221_M73_Read_Strandness": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M73/Read_Strandness/G221_M73_Read_Strandness.txt", "G264_M02_Read_Strandness": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G264_M02/Read_Strandness/G264_M02_Read_Strandness.txt", "G221_M70_Read_Strandness": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M70/Read_Strandness/G221_M70_Read_Strandness.txt", "G264_M06_Read_Strandness": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G264_M06/Read_Strandness/G264_M06_Read_Strandness.txt", "G264_M03_Read_Strandness": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G264_M03/Read_Strandness/G264_M03_Read_Strandness.txt", "G221_M71_Read_Strandness": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M71/Read_Strandness/G221_M71_Read_Strandness.txt", "G264_M04_Read_Strandness": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G264_M04/Read_Strandness/G264_M04_Read_Strandness.txt", "G264_M01_Read_Strandness": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G264_M01/Read_Strandness/G264_M01_Read_Strandness.txt", "G221_M69_Read_Strandness": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M69/Read_Strandness/G221_M69_Read_Strandness.txt", "G264_M05_Read_Strandness": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G264_M05/Read_Strandness/G264_M05_Read_Strandness.txt", "G221_M74_Read_Strandness": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M74/Read_Strandness/G221_M74_Read_Strandness.txt", "G221_M72_Read_Strandness": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M72/Read_Strandness/G221_M72_Read_Strandness.txt" } }, "featureCounts": { "all_sections": { "G221_M73_sorted": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M73/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M73_featureCounts.out.summary", "G264_M02_sorted": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G264_M02/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G264_M02_featureCounts.out.summary", "G221_M70_sorted": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M70/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M70_featureCounts.out.summary", "G264_M06_sorted": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G264_M06/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G264_M06_featureCounts.out.summary", "G264_M03_sorted": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G264_M03/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G264_M03_featureCounts.out.summary", "G221_M71_sorted": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M71/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M71_featureCounts.out.summary", "G264_M04_sorted": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G264_M04/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G264_M04_featureCounts.out.summary", "G264_M01_sorted": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G264_M01/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G264_M01_featureCounts.out.summary", "G221_M69_sorted": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M69/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M69_featureCounts.out.summary", "G264_M05_sorted": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G264_M05/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G264_M05_featureCounts.out.summary", "G221_M74_sorted": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M74/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M74_featureCounts.out.summary", "G221_M72_sorted": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M72/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G221_M72_featureCounts.out.summary" } }, "Samtools": { "flagstat": { "G221_M73_statistics_for_primary_reads": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M73/aligner/G221_M73_statistics_for_primary_reads.txt", "G221_M73_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M73/aligner/G221_M73_statistics_for_primary_unique_reads.txt", "G221_M73_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M73/aligner/G221_M73_statistics_for_all_accepted_reads.txt", "statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G264_M05/aligner/statistics_for_primary_unique_reads.txt", "G221_M70_statistics_for_primary_reads": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M70/aligner/G221_M70_statistics_for_primary_reads.txt", "G221_M70_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M70/aligner/G221_M70_statistics_for_all_accepted_reads.txt", "G221_M70_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M70/aligner/G221_M70_statistics_for_primary_unique_reads.txt", "G221_M71_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M71/aligner/G221_M71_statistics_for_primary_unique_reads.txt", "G221_M71_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M71/aligner/G221_M71_statistics_for_all_accepted_reads.txt", "G221_M71_statistics_for_primary_reads": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M71/aligner/G221_M71_statistics_for_primary_reads.txt", "G221_M69_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M69/aligner/G221_M69_statistics_for_primary_unique_reads.txt", "G221_M69_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M69/aligner/G221_M69_statistics_for_all_accepted_reads.txt", "G221_M69_statistics_for_primary_reads": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M69/aligner/G221_M69_statistics_for_primary_reads.txt", "G221_M74_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M74/aligner/G221_M74_statistics_for_primary_unique_reads.txt", "G221_M74_statistics_for_primary_reads": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M74/aligner/G221_M74_statistics_for_primary_reads.txt", "G221_M74_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M74/aligner/G221_M74_statistics_for_all_accepted_reads.txt", "G221_M72_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M72/aligner/G221_M72_statistics_for_all_accepted_reads.txt", "G221_M72_statistics_for_primary_reads": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M72/aligner/G221_M72_statistics_for_primary_reads.txt", "G221_M72_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M72/aligner/G221_M72_statistics_for_primary_unique_reads.txt" } }, "STAR": { "SummaryLog": { "G221_M73_G221_M73": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M73/aligner/G221_M73_G221_M73_Log.final.out", "G221_M70_G221_M70": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M70/aligner/G221_M70_G221_M70_Log.final.out", "G221_M71_G221_M71": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M71/aligner/G221_M71_G221_M71_Log.final.out", "G221_M69_G221_M69": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M69/aligner/G221_M69_G221_M69_Log.final.out", "G221_M74_G221_M74": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M74/aligner/G221_M74_G221_M74_Log.final.out", "G221_M72_G221_M72": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M72/aligner/G221_M72_G221_M72_Log.final.out" }, "ReadsPerGene": { "G221_M73": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M73/aligner/G221_M73_ReadsPerGene.out.tab", "G221_M70": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M70/aligner/G221_M70_ReadsPerGene.out.tab", "G221_M71": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M71/aligner/G221_M71_ReadsPerGene.out.tab", "G221_M69": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M69/aligner/G221_M69_ReadsPerGene.out.tab", "G221_M74": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M74/aligner/G221_M74_ReadsPerGene.out.tab", "G221_M72": "/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES/G221_M72/aligner/G221_M72_ReadsPerGene.out.tab" } } }, "report_general_stats_data": [ { "G221_M73_sorted": { "Total": 18554750, "Assigned": 17399518, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 1155232, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 93.7739285088724 }, "G264_M02_sorted": { "Total": 21931957, "Assigned": 20479223, "Unassigned_Ambiguity": 0, 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