[2026-08-21 09:15:04,791] multiqc [DEBUG ] This is MultiQC v1.11 [2026-08-21 09:15:04,792] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2026-08-21 09:15:04,792] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2026-08-21 09:15:04,792] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2026-08-21 09:15:04,794] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2026-08-21 09:15:04,794] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2026-08-21 09:15:04,794] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2026-08-21 09:15:04,794] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES /projectnb2/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/Scripts/06_CollectMetrics/ [2026-08-21 09:15:05,224] multiqc [WARNING] MultiQC Version v1.35 now available! [2026-08-21 09:15:05,224] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES /projectnb2/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/Scripts/06_CollectMetrics/ [2026-08-21 09:15:05,224] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/Scripts/99_final_summary/G264_vs_G221_multiqc_report [2026-08-21 09:15:05,224] multiqc [DEBUG ] Template : default [2026-08-21 09:15:05,224] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2026-08-21 09:15:05,225] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2026-08-21 09:15:05,225] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpzl_eg5hq [2026-08-21 09:15:05,583] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/SAMPLES [2026-08-21 09:15:05,583] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/Scripts/03_FASTQC [2026-08-21 09:15:05,583] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/Scripts/06_CollectMetrics [2026-08-21 09:15:05,931] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M73_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2026-08-21 09:15:05,932] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M73_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2026-08-21 09:15:06,068] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M73_SJ.out.tab [2026-08-21 09:15:06,072] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M73_SJ.out.tab [2026-08-21 09:15:06,072] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M73_SJ.out.tab [2026-08-21 09:15:06,072] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M73_SJ.out.tab [2026-08-21 09:15:06,079] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M73_SJ.out.tab [2026-08-21 09:15:06,079] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M73_SJ.out.tab [2026-08-21 09:15:06,079] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M73_SJ.out.tab [2026-08-21 09:15:06,079] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M73_SJ.out.tab [2026-08-21 09:15:06,079] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M73_SJ.out.tab [2026-08-21 09:15:06,079] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M73_SJ.out.tab [2026-08-21 09:15:06,079] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M73_SJ.out.tab [2026-08-21 09:15:06,079] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M73_SJ.out.tab [2026-08-21 09:15:06,079] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G221_M73_SJ.out.tab [2026-08-21 09:15:06,079] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M73_SJ.out.tab [2026-08-21 09:15:07,923] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M73_primary_unique.bam.bai [2026-08-21 09:15:07,923] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M73_primary_unique.bam [2026-08-21 09:15:07,960] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:07,964] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:07,964] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:07,965] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:07,971] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:07,971] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:07,971] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:07,971] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:07,971] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:07,971] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:07,971] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:07,971] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:07,991] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:08,926] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:08,930] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:08,931] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:08,931] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:08,936] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:08,937] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:08,937] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:08,937] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:08,937] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:08,937] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:08,937] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:08,937] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:08,956] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M73_featureCounts.out [2026-08-21 09:15:09,905] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264-M02-Fukai-s-sample_R1_001.fastq.gz [2026-08-21 09:15:09,905] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264-M02-Fukai-s-sample_R2_001.fastq.gz [2026-08-21 09:15:09,920] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264_M02_primary_unique.bam [2026-08-21 09:15:09,940] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264_M02_primary_unique.bam.bai [2026-08-21 09:15:09,981] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:09,985] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:09,986] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:09,986] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:09,993] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:09,993] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:09,993] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:09,993] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:09,993] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:09,993] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:09,993] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:09,993] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:10,013] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:10,933] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:10,938] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:10,938] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:10,938] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:10,944] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:10,944] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:10,944] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:10,944] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:10,944] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:10,944] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:10,944] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:10,944] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:10,963] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-21 09:15:11,862] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M70_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2026-08-21 09:15:11,865] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M70_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2026-08-21 09:15:11,929] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M70_SJ.out.tab [2026-08-21 09:15:11,932] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M70_SJ.out.tab [2026-08-21 09:15:11,933] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M70_SJ.out.tab [2026-08-21 09:15:11,933] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M70_SJ.out.tab [2026-08-21 09:15:11,939] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M70_SJ.out.tab [2026-08-21 09:15:11,939] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M70_SJ.out.tab [2026-08-21 09:15:11,939] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M70_SJ.out.tab [2026-08-21 09:15:11,939] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M70_SJ.out.tab [2026-08-21 09:15:11,939] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M70_SJ.out.tab [2026-08-21 09:15:11,939] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M70_SJ.out.tab [2026-08-21 09:15:11,939] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M70_SJ.out.tab [2026-08-21 09:15:11,939] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M70_SJ.out.tab [2026-08-21 09:15:11,971] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M70_SJ.out.tab [2026-08-21 09:15:13,588] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M70_primary_unique.bam [2026-08-21 09:15:13,605] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M70_primary_unique.bam.bai [2026-08-21 09:15:13,662] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:13,666] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:13,667] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:13,667] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:13,673] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:13,673] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:13,673] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:13,673] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:13,673] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:13,673] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:13,673] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:13,673] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:13,693] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:14,599] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:14,601] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:14,601] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:14,601] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:14,605] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:14,606] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:14,606] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:14,606] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:14,606] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:14,606] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:14,606] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:14,606] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:14,624] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M70_featureCounts.out [2026-08-21 09:15:15,524] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264-M06-Fukai-s-sample_R2_001.fastq.gz [2026-08-21 09:15:15,527] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264-M06-Fukai-s-sample_R1_001.fastq.gz [2026-08-21 09:15:15,527] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264_M06_primary_unique.bam [2026-08-21 09:15:15,545] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264_M06_primary_unique.bam.bai [2026-08-21 09:15:15,593] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:15,597] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:15,597] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:15,597] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:15,603] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:15,603] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:15,603] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:15,603] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:15,603] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:15,603] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:15,603] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:15,603] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:15,623] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:16,553] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:16,557] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:16,558] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:16,558] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:16,563] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:16,563] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:16,563] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:16,563] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:16,563] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:16,563] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:16,563] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:16,563] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:16,583] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-21 09:15:17,518] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264-M03-Fukai-s-sample_R2_001.fastq.gz [2026-08-21 09:15:17,521] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264-M03-Fukai-s-sample_R1_001.fastq.gz [2026-08-21 09:15:17,550] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264_M03_primary_unique.bam [2026-08-21 09:15:17,550] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264_M03_primary_unique.bam.bai [2026-08-21 09:15:17,601] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:17,605] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:17,605] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:17,605] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:17,611] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:17,611] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:17,612] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:17,612] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:17,612] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:17,612] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:17,612] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:17,612] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:17,631] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:18,554] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:18,558] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:18,559] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:18,559] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:18,565] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:18,565] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:18,565] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:18,565] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:18,565] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:18,565] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:18,565] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:18,565] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:18,585] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-21 09:15:19,482] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M71_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2026-08-21 09:15:19,484] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M71_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2026-08-21 09:15:19,523] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M71_SJ.out.tab [2026-08-21 09:15:19,527] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M71_SJ.out.tab [2026-08-21 09:15:19,528] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M71_SJ.out.tab [2026-08-21 09:15:19,528] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M71_SJ.out.tab [2026-08-21 09:15:19,534] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M71_SJ.out.tab [2026-08-21 09:15:19,534] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M71_SJ.out.tab [2026-08-21 09:15:19,534] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M71_SJ.out.tab [2026-08-21 09:15:19,534] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M71_SJ.out.tab [2026-08-21 09:15:19,534] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M71_SJ.out.tab [2026-08-21 09:15:19,534] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M71_SJ.out.tab [2026-08-21 09:15:19,534] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M71_SJ.out.tab [2026-08-21 09:15:19,534] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M71_SJ.out.tab [2026-08-21 09:15:19,569] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M71_SJ.out.tab [2026-08-21 09:15:21,229] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M71_primary_unique.bam [2026-08-21 09:15:21,283] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M71_primary_unique.bam.bai [2026-08-21 09:15:21,347] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:21,352] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:21,352] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:21,352] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:21,358] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:21,358] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:21,358] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:21,358] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:21,358] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:21,359] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:21,359] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:21,359] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:21,378] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:22,314] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:22,318] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:22,319] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:22,319] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:22,325] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:22,325] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:22,325] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:22,325] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:22,325] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:22,325] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:22,325] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:22,325] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:22,344] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M71_featureCounts.out [2026-08-21 09:15:23,247] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264-M04-Fukai-s-sample_R2_001.fastq.gz [2026-08-21 09:15:23,250] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264-M04-Fukai-s-sample_R1_001.fastq.gz [2026-08-21 09:15:23,250] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264_M04_primary_unique.bam.bai [2026-08-21 09:15:23,250] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264_M04_primary_unique.bam [2026-08-21 09:15:23,320] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:23,324] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:23,324] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:23,324] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:23,329] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:23,330] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:23,330] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:23,330] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:23,330] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:23,330] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:23,330] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:23,330] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:23,348] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:24,253] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:24,257] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:24,258] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:24,258] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:24,264] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:24,264] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:24,264] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:24,264] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:24,264] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:24,264] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:24,264] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:24,264] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:24,284] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-21 09:15:25,205] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264-M01-Fukai-s-sample_R1_001.fastq.gz [2026-08-21 09:15:25,207] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264-M01-Fukai-s-sample_R2_001.fastq.gz [2026-08-21 09:15:25,234] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264_M01_primary_unique.bam [2026-08-21 09:15:25,235] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264_M01_primary_unique.bam.bai [2026-08-21 09:15:25,292] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:25,296] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:25,296] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:25,296] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:25,303] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:25,303] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:25,303] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:25,303] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:25,303] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:25,303] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:25,303] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:25,303] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:25,323] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:26,239] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:26,243] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:26,243] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:26,243] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:26,250] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:26,250] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:26,250] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:26,250] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:26,250] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:26,250] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:26,250] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:26,250] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:26,269] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-21 09:15:27,181] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M69_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2026-08-21 09:15:27,184] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M69_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2026-08-21 09:15:27,297] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M69_SJ.out.tab [2026-08-21 09:15:27,301] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M69_SJ.out.tab [2026-08-21 09:15:27,302] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M69_SJ.out.tab [2026-08-21 09:15:27,302] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M69_SJ.out.tab [2026-08-21 09:15:27,307] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M69_SJ.out.tab [2026-08-21 09:15:27,307] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M69_SJ.out.tab [2026-08-21 09:15:27,307] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M69_SJ.out.tab [2026-08-21 09:15:27,307] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M69_SJ.out.tab [2026-08-21 09:15:27,307] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M69_SJ.out.tab [2026-08-21 09:15:27,307] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M69_SJ.out.tab [2026-08-21 09:15:27,307] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M69_SJ.out.tab [2026-08-21 09:15:27,307] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M69_SJ.out.tab [2026-08-21 09:15:27,339] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M69_SJ.out.tab [2026-08-21 09:15:28,916] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M69_primary_unique.bam [2026-08-21 09:15:28,934] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M69_primary_unique.bam.bai [2026-08-21 09:15:28,980] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:28,983] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:28,984] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:28,984] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:28,989] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:28,989] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:28,989] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:28,989] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:28,989] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:28,989] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:28,989] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:28,989] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:29,007] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:29,922] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:29,925] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:29,925] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:29,925] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:29,929] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:29,929] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:29,929] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:29,929] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:29,929] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:29,929] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:29,929] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:29,929] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:29,947] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M69_featureCounts.out [2026-08-21 09:15:30,852] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264-M05-Fukai-s-sample_R2_001.fastq.gz [2026-08-21 09:15:30,854] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264-M05-Fukai-s-sample_R1_001.fastq.gz [2026-08-21 09:15:30,880] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264_M05_primary_unique.bam.bai [2026-08-21 09:15:30,883] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264_M05_primary_unique.bam [2026-08-21 09:15:30,911] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:30,916] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:30,916] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:30,916] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:30,922] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:30,922] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:30,922] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:30,922] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:30,922] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:30,922] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:30,922] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:30,922] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:30,940] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:31,890] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:31,895] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:31,895] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:31,895] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:31,903] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:31,903] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:31,903] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:31,903] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:31,903] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:31,903] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:31,903] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:31,903] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:31,925] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-21 09:15:32,845] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M74_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2026-08-21 09:15:32,848] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M74_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2026-08-21 09:15:32,884] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M74_primary_unique.bam [2026-08-21 09:15:32,902] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M74_primary_unique.bam.bai [2026-08-21 09:15:33,000] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M74_SJ.out.tab [2026-08-21 09:15:33,005] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M74_SJ.out.tab [2026-08-21 09:15:33,005] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M74_SJ.out.tab [2026-08-21 09:15:33,005] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M74_SJ.out.tab [2026-08-21 09:15:33,011] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M74_SJ.out.tab [2026-08-21 09:15:33,011] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M74_SJ.out.tab [2026-08-21 09:15:33,011] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M74_SJ.out.tab [2026-08-21 09:15:33,011] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M74_SJ.out.tab [2026-08-21 09:15:33,011] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M74_SJ.out.tab [2026-08-21 09:15:33,011] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M74_SJ.out.tab [2026-08-21 09:15:33,011] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M74_SJ.out.tab [2026-08-21 09:15:33,011] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M74_SJ.out.tab [2026-08-21 09:15:33,011] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G221_M74_SJ.out.tab [2026-08-21 09:15:33,011] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M74_SJ.out.tab [2026-08-21 09:15:34,751] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:34,787] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:34,788] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:34,788] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:34,795] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:34,795] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:34,796] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:34,796] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:34,796] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:34,796] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:34,796] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:34,796] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:34,816] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:35,741] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:35,744] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:35,744] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:35,744] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:35,748] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:35,748] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:35,748] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:35,748] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:35,749] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:35,749] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:35,749] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:35,749] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:35,767] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M74_featureCounts.out [2026-08-21 09:15:36,679] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M72_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2026-08-21 09:15:36,681] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M72_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2026-08-21 09:15:36,757] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M72_primary_unique.bam.bai [2026-08-21 09:15:36,807] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M72_SJ.out.tab [2026-08-21 09:15:36,811] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M72_SJ.out.tab [2026-08-21 09:15:36,812] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M72_SJ.out.tab [2026-08-21 09:15:36,812] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M72_SJ.out.tab [2026-08-21 09:15:36,818] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M72_SJ.out.tab [2026-08-21 09:15:36,818] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M72_SJ.out.tab [2026-08-21 09:15:36,818] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M72_SJ.out.tab [2026-08-21 09:15:36,818] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M72_SJ.out.tab [2026-08-21 09:15:36,818] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M72_SJ.out.tab [2026-08-21 09:15:36,818] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M72_SJ.out.tab [2026-08-21 09:15:36,818] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M72_SJ.out.tab [2026-08-21 09:15:36,818] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M72_SJ.out.tab [2026-08-21 09:15:36,852] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M72_SJ.out.tab [2026-08-21 09:15:38,421] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M72_primary_unique.bam [2026-08-21 09:15:38,475] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:38,479] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:38,479] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:38,480] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:38,485] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:38,485] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:38,485] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:38,485] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:38,485] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:38,485] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:38,485] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:38,485] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:38,504] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:39,418] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:39,420] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:39,421] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:39,421] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:39,426] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:39,426] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:39,426] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:39,426] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:39,426] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:39,426] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:39,426] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:39,426] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:39,445] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M72_featureCounts.out [2026-08-21 09:15:40,350] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-21 09:15:40,353] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-21 09:15:40,357] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-21 09:15:40,369] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-21 09:15:40,371] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-21 09:15:40,375] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-21 09:15:40,387] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-08-21 09:15:40,390] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-08-21 09:15:40,405] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2026-08-21 09:15:40,408] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2026-08-21 09:15:40,411] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2026-08-21 09:15:40,434] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2026-08-21 09:15:40,436] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2026-08-21 09:15:40,477] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-21 09:15:40,479] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-21 09:15:40,479] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-21 09:15:40,479] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-21 09:15:40,483] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-21 09:15:40,496] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2026-08-21 09:15:40,499] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2026-08-21 09:15:40,502] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2026-08-21 09:15:40,518] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-21 09:15:40,522] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-21 09:15:40,528] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-21 09:15:40,542] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-08-21 09:15:40,544] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-08-21 09:15:40,588] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2026-08-21 09:15:40,592] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2026-08-21 09:15:40,592] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2026-08-21 09:15:40,592] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2026-08-21 09:15:40,598] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2026-08-21 09:15:40,599] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2026-08-21 09:15:40,599] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2026-08-21 09:15:40,599] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2026-08-21 09:15:40,599] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2026-08-21 09:15:40,599] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2026-08-21 09:15:40,599] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2026-08-21 09:15:40,599] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2026-08-21 09:15:40,599] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2026-08-21 09:15:40,599] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2026-08-21 09:15:41,408] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-21 09:15:41,410] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-21 09:15:41,411] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-21 09:15:41,411] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-21 09:15:41,416] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-21 09:15:41,462] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-21 09:15:41,465] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-21 09:15:41,465] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-21 09:15:41,465] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-21 09:15:41,470] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-21 09:15:44,669] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2026-08-21 09:15:44,685] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2026-08-21 09:15:44,688] multiqc [DEBUG ] No samples found: custom_content [2026-08-21 09:15:44,708] multiqc [DEBUG ] No samples found: ccs [2026-08-21 09:15:44,733] multiqc [DEBUG ] No samples found: ngsderive [2026-08-21 09:15:44,760] multiqc [DEBUG ] No samples found: purple [2026-08-21 09:15:44,770] multiqc [DEBUG ] No samples found: conpair [2026-08-21 09:15:44,788] multiqc [DEBUG ] No samples found: lima [2026-08-21 09:15:44,814] multiqc [DEBUG ] No samples found: peddy [2026-08-21 09:15:44,842] multiqc [DEBUG ] No samples found: somalier [2026-08-21 09:15:44,861] multiqc [DEBUG ] No samples found: methylQA [2026-08-21 09:15:44,917] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2026-08-21 09:15:44,917] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2026-08-21 09:15:44,917] multiqc [DEBUG ] No samples found: mosdepth [2026-08-21 09:15:44,926] multiqc [DEBUG ] No samples found: phantompeakqualtools [2026-08-21 09:15:44,947] multiqc [DEBUG ] No samples found: qualimap [2026-08-21 09:15:44,974] multiqc [DEBUG ] No samples found: preseq [2026-08-21 09:15:45,001] multiqc [DEBUG ] No samples found: quast [2026-08-21 09:15:45,035] multiqc [DEBUG ] No samples found: qorts [2026-08-21 09:15:45,069] multiqc [DEBUG ] No samples found: rna_seqc [2026-08-21 09:15:45,091] multiqc [DEBUG ] No samples found: rockhopper [2026-08-21 09:15:45,113] multiqc [DEBUG ] No samples found: rsem [2026-08-21 09:15:45,162] multiqc.modules.rseqc.rseqc [INFO ] Found 12 infer_experiment reports [2026-08-21 09:15:45,171] multiqc [DEBUG ] No samples found: busco [2026-08-21 09:15:45,189] multiqc [DEBUG ] No samples found: bustools [2026-08-21 09:15:45,215] multiqc [DEBUG ] No samples found: goleft_indexcov [2026-08-21 09:15:45,242] multiqc [DEBUG ] No samples found: gffcompare [2026-08-21 09:15:45,256] multiqc [DEBUG ] No samples found: disambiguate [2026-08-21 09:15:45,276] multiqc [DEBUG ] No samples found: supernova [2026-08-21 09:15:45,358] multiqc [DEBUG ] No samples found: deeptools [2026-08-21 09:15:45,381] multiqc [DEBUG ] No samples found: sargasso [2026-08-21 09:15:45,406] multiqc [DEBUG ] No samples found: verifybamid [2026-08-21 09:15:45,438] multiqc [DEBUG ] No samples found: mirtrace [2026-08-21 09:15:45,500] multiqc [DEBUG ] No samples found: happy [2026-08-21 09:15:45,545] multiqc [DEBUG ] No samples found: mirtop [2026-08-21 09:15:45,569] multiqc [DEBUG ] No samples found: sambamba [2026-08-21 09:15:45,591] multiqc [DEBUG ] No samples found: homer [2026-08-21 09:15:45,619] multiqc [DEBUG ] No samples found: hops [2026-08-21 09:15:45,652] multiqc [DEBUG ] No samples found: macs2 [2026-08-21 09:15:45,662] multiqc [DEBUG ] No samples found: theta2 [2026-08-21 09:15:45,677] multiqc [DEBUG ] No samples found: snpeff [2026-08-21 09:15:45,718] multiqc [DEBUG ] No samples found: gatk [2026-08-21 09:15:45,727] multiqc [DEBUG ] No samples found: htseq [2026-08-21 09:15:45,754] multiqc [DEBUG ] No samples found: bcftools [2026-08-21 09:15:45,786] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M73_sorted [2026-08-21 09:15:45,787] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G264_M02_sorted [2026-08-21 09:15:45,789] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M70_sorted [2026-08-21 09:15:45,790] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G264_M06_sorted [2026-08-21 09:15:45,792] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G264_M03_sorted [2026-08-21 09:15:45,793] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M71_sorted [2026-08-21 09:15:45,794] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G264_M04_sorted [2026-08-21 09:15:45,795] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G264_M01_sorted [2026-08-21 09:15:45,796] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M69_sorted [2026-08-21 09:15:45,797] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G264_M05_sorted [2026-08-21 09:15:45,798] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M74_sorted [2026-08-21 09:15:45,799] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M72_sorted [2026-08-21 09:15:45,799] multiqc.modules.featureCounts.feature_counts [INFO ] Found 12 reports [2026-08-21 09:15:45,838] multiqc [DEBUG ] No samples found: fgbio [2026-08-21 09:15:45,923] multiqc [DEBUG ] No samples found: dragen [2026-08-21 09:15:45,948] multiqc [DEBUG ] No samples found: dedup [2026-08-21 09:15:45,971] multiqc [DEBUG ] No samples found: damageprofiler [2026-08-21 09:15:46,158] multiqc [DEBUG ] No samples found: biobambam2 [2026-08-21 09:15:46,172] multiqc [DEBUG ] No samples found: jcvi [2026-08-21 09:15:46,178] multiqc [DEBUG ] No samples found: mtnucratio [2026-08-21 09:15:46,182] multiqc [DEBUG ] No samples found: picard [2026-08-21 09:15:46,200] multiqc [DEBUG ] No samples found: vep [2026-08-21 09:15:46,234] multiqc [DEBUG ] No samples found: sentieon [2026-08-21 09:15:46,254] multiqc [DEBUG ] No samples found: prokka [2026-08-21 09:15:46,276] multiqc [DEBUG ] No samples found: qc3C [2026-08-21 09:15:46,293] multiqc [DEBUG ] No samples found: nanostat [2026-08-21 09:15:46,302] multiqc [DEBUG ] No samples found: samblaster [2026-08-21 09:15:46,371] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-21 09:15:46,372] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-21 09:15:46,374] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-21 09:15:46,374] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-21 09:15:46,376] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-21 09:15:46,381] multiqc.modules.samtools.samtools [INFO ] Found 19 flagstat reports [2026-08-21 09:15:46,403] multiqc [DEBUG ] No samples found: sexdeterrmine [2026-08-21 09:15:46,409] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2026-08-21 09:15:46,415] multiqc [DEBUG ] No samples found: bamtools [2026-08-21 09:15:46,420] multiqc [DEBUG ] No samples found: jellyfish [2026-08-21 09:15:46,429] multiqc [DEBUG ] No samples found: vcftools [2026-08-21 09:15:46,449] multiqc [DEBUG ] No samples found: longranger [2026-08-21 09:15:46,466] multiqc [DEBUG ] No samples found: stacks [2026-08-21 09:15:46,481] multiqc [DEBUG ] No samples found: varscan2 [2026-08-21 09:15:46,499] multiqc [DEBUG ] No samples found: snippy [2026-08-21 09:15:46,533] multiqc [DEBUG ] No samples found: bbmap [2026-08-21 09:15:46,551] multiqc [DEBUG ] No samples found: bismark [2026-08-21 09:15:46,571] multiqc [DEBUG ] No samples found: biscuit [2026-08-21 09:15:46,588] multiqc [DEBUG ] No samples found: hicexplorer [2026-08-21 09:15:46,605] multiqc [DEBUG ] No samples found: hicup [2026-08-21 09:15:46,650] multiqc [DEBUG ] No samples found: hicpro [2026-08-21 09:15:46,659] multiqc [DEBUG ] No samples found: salmon [2026-08-21 09:15:46,682] multiqc [DEBUG ] No samples found: kallisto [2026-08-21 09:15:46,710] multiqc [DEBUG ] No samples found: slamdunk [2026-08-21 09:15:47,369] multiqc.modules.star.star [INFO ] Found 6 reports and 6 gene count files [2026-08-21 09:15:47,414] multiqc [DEBUG ] No samples found: hisat2 [2026-08-21 09:15:47,455] multiqc [DEBUG ] No samples found: tophat [2026-08-21 09:15:47,479] multiqc [DEBUG ] No samples found: bowtie2 [2026-08-21 09:15:47,504] multiqc [DEBUG ] No samples found: bowtie1 [2026-08-21 09:15:47,528] multiqc [DEBUG ] No samples found: snpsplit [2026-08-21 09:15:47,546] multiqc [DEBUG ] No samples found: odgi [2026-08-21 09:15:47,577] multiqc [DEBUG ] No samples found: pangolin [2026-08-21 09:15:47,587] multiqc [DEBUG ] No samples found: kat [2026-08-21 09:15:47,596] multiqc [DEBUG ] No samples found: leehom [2026-08-21 09:15:47,630] multiqc [DEBUG ] No samples found: adapterRemoval [2026-08-21 09:15:47,640] multiqc [DEBUG ] No samples found: clipandmerge [2026-08-21 09:15:47,662] multiqc [DEBUG ] No samples found: cutadapt [2026-08-21 09:15:47,670] multiqc [DEBUG ] No samples found: flexbar [2026-08-21 09:15:47,713] multiqc [DEBUG ] No samples found: kaiju [2026-08-21 09:15:47,739] multiqc [DEBUG ] No samples found: kraken [2026-08-21 09:15:47,756] multiqc [DEBUG ] No samples found: malt [2026-08-21 09:15:47,777] multiqc [DEBUG ] No samples found: trimmomatic [2026-08-21 09:15:47,804] multiqc [DEBUG ] No samples found: sickle [2026-08-21 09:15:47,832] multiqc [DEBUG ] No samples found: skewer [2026-08-21 09:15:47,842] multiqc [DEBUG ] No samples found: sortmerna [2026-08-21 09:15:47,850] multiqc [DEBUG ] No samples found: biobloomtools [2026-08-21 09:15:47,862] multiqc [DEBUG ] No samples found: fastq_screen [2026-08-21 09:15:47,882] multiqc [DEBUG ] No samples found: afterqc [2026-08-21 09:15:47,897] multiqc [DEBUG ] No samples found: fastp [2026-08-21 09:15:47,921] multiqc [DEBUG ] No samples found: fastqc [2026-08-21 09:15:47,928] multiqc [DEBUG ] No samples found: pychopper [2026-08-21 09:15:47,947] multiqc [DEBUG ] No samples found: pycoqc [2026-08-21 09:15:47,972] multiqc [DEBUG ] No samples found: minionqc [2026-08-21 09:15:47,987] multiqc [DEBUG ] No samples found: multivcfanalyzer [2026-08-21 09:15:48,021] multiqc [DEBUG ] No samples found: clusterflow [2026-08-21 09:15:48,057] multiqc [DEBUG ] No samples found: bcl2fastq [2026-08-21 09:15:48,083] multiqc [DEBUG ] No samples found: bclconvert [2026-08-21 09:15:48,108] multiqc [DEBUG ] No samples found: interop [2026-08-21 09:15:48,129] multiqc [DEBUG ] No samples found: ivar [2026-08-21 09:15:48,146] multiqc [DEBUG ] No samples found: flash [2026-08-21 09:15:48,159] multiqc [DEBUG ] No samples found: seqyclean [2026-08-21 09:15:48,169] multiqc [DEBUG ] No samples found: optitype [2026-08-21 09:15:48,188] multiqc [INFO ] Compressing plot data [2026-08-21 09:15:48,208] multiqc [INFO ] Report : multiqc_report.html [2026-08-21 09:15:48,208] multiqc [INFO ] Data : multiqc_data [2026-08-21 09:15:48,208] multiqc [DEBUG ] Moving data file from '/scratch/tmpzl_eg5hq/multiqc_data' to '/projectnb/wax-dk/max/G260_G264_RNAseq/G264_vs_G221/Scripts/99_final_summary/G264_vs_G221_multiqc_report/multiqc_data' [2026-08-21 09:15:48,805] multiqc [INFO ] MultiQC complete