[2026-08-17 22:02:30,183] multiqc [DEBUG ] This is MultiQC v1.11 [2026-08-17 22:02:30,184] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2026-08-17 22:02:30,184] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2026-08-17 22:02:30,184] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2026-08-17 22:02:30,186] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/G260_G264_RNAseq/G264_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2026-08-17 22:02:30,186] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2026-08-17 22:02:30,186] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2026-08-17 22:02:30,186] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G260_G264_RNAseq/G264_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G260_G264_RNAseq/G264_RNAseq/SAMPLES /projectnb2/wax-dk/max/G260_G264_RNAseq/G264_RNAseq/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G260_G264_RNAseq/G264_RNAseq/Scripts/06_CollectMetrics/ [2026-08-17 22:02:30,771] multiqc [WARNING] MultiQC Version v1.35 now available! [2026-08-17 22:02:30,772] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G260_G264_RNAseq/G264_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G260_G264_RNAseq/G264_RNAseq/SAMPLES /projectnb2/wax-dk/max/G260_G264_RNAseq/G264_RNAseq/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G260_G264_RNAseq/G264_RNAseq/Scripts/06_CollectMetrics/ [2026-08-17 22:02:30,772] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G260_G264_RNAseq/G264_RNAseq/Scripts/99_final_summary/G264_RNAseq_multiqc_report [2026-08-17 22:02:30,772] multiqc [DEBUG ] Template : default [2026-08-17 22:02:30,772] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2026-08-17 22:02:30,773] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2026-08-17 22:02:30,773] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpc4rsusld [2026-08-17 22:02:31,098] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G260_G264_RNAseq/G264_RNAseq/SAMPLES [2026-08-17 22:02:31,099] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G260_G264_RNAseq/G264_RNAseq/Scripts/03_FASTQC [2026-08-17 22:02:31,099] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G260_G264_RNAseq/G264_RNAseq/Scripts/06_CollectMetrics [2026-08-17 22:02:31,152] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264-M02-Fukai-s-sample_R1_001.fastq.gz [2026-08-17 22:02:31,152] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264-M02-Fukai-s-sample_R2_001.fastq.gz [2026-08-17 22:02:31,282] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M02_SJ.out.tab [2026-08-17 22:02:31,286] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M02_SJ.out.tab [2026-08-17 22:02:31,287] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M02_SJ.out.tab [2026-08-17 22:02:31,287] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M02_SJ.out.tab [2026-08-17 22:02:31,293] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M02_SJ.out.tab [2026-08-17 22:02:31,293] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M02_SJ.out.tab [2026-08-17 22:02:31,293] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M02_SJ.out.tab [2026-08-17 22:02:31,293] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M02_SJ.out.tab [2026-08-17 22:02:31,293] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M02_SJ.out.tab [2026-08-17 22:02:31,293] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M02_SJ.out.tab [2026-08-17 22:02:31,293] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M02_SJ.out.tab [2026-08-17 22:02:31,293] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M02_SJ.out.tab [2026-08-17 22:02:31,293] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G264_M02_SJ.out.tab [2026-08-17 22:02:31,293] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M02_SJ.out.tab [2026-08-17 22:02:33,270] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M02_marked_dup_metrics.txt [2026-08-17 22:02:33,274] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M02_marked_dup_metrics.txt [2026-08-17 22:02:33,274] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M02_marked_dup_metrics.txt [2026-08-17 22:02:33,274] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M02_marked_dup_metrics.txt [2026-08-17 22:02:33,280] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M02_marked_dup_metrics.txt [2026-08-17 22:02:33,335] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M02_metrics [2026-08-17 22:02:33,341] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M02_metrics [2026-08-17 22:02:33,341] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M02_metrics [2026-08-17 22:02:33,341] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M02_metrics [2026-08-17 22:02:33,348] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M02_metrics [2026-08-17 22:02:33,396] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264_M02_hist.pdf [2026-08-17 22:02:33,445] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:33,449] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:33,450] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:33,450] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:33,456] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:33,456] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:33,456] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:33,456] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:33,457] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:33,457] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:33,457] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:33,457] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:33,484] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:34,447] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:34,450] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:34,451] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:34,451] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:34,456] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:34,456] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:34,456] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:34,456] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:34,456] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:34,456] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:34,456] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:34,456] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:34,475] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M02_featureCounts.out [2026-08-17 22:02:35,384] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M02_metrics [2026-08-17 22:02:35,422] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M02_metrics [2026-08-17 22:02:35,430] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M02_metrics [2026-08-17 22:02:35,483] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264-M06-Fukai-s-sample_R2_001.fastq.gz [2026-08-17 22:02:35,484] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264-M06-Fukai-s-sample_R1_001.fastq.gz [2026-08-17 22:02:35,565] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M06_SJ.out.tab [2026-08-17 22:02:35,569] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M06_SJ.out.tab [2026-08-17 22:02:35,569] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M06_SJ.out.tab [2026-08-17 22:02:35,570] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M06_SJ.out.tab [2026-08-17 22:02:35,577] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M06_SJ.out.tab [2026-08-17 22:02:35,577] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M06_SJ.out.tab [2026-08-17 22:02:35,578] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M06_SJ.out.tab [2026-08-17 22:02:35,578] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M06_SJ.out.tab [2026-08-17 22:02:35,578] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M06_SJ.out.tab [2026-08-17 22:02:35,578] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M06_SJ.out.tab [2026-08-17 22:02:35,578] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M06_SJ.out.tab [2026-08-17 22:02:35,578] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M06_SJ.out.tab [2026-08-17 22:02:35,578] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G264_M06_SJ.out.tab [2026-08-17 22:02:35,578] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M06_SJ.out.tab [2026-08-17 22:02:37,833] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M06_marked_dup_metrics.txt [2026-08-17 22:02:37,838] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M06_marked_dup_metrics.txt [2026-08-17 22:02:37,838] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M06_marked_dup_metrics.txt [2026-08-17 22:02:37,838] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M06_marked_dup_metrics.txt [2026-08-17 22:02:37,845] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M06_marked_dup_metrics.txt [2026-08-17 22:02:37,858] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264_M06_hist.pdf [2026-08-17 22:02:37,878] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M06_metrics [2026-08-17 22:02:37,882] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M06_metrics [2026-08-17 22:02:37,882] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M06_metrics [2026-08-17 22:02:37,882] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M06_metrics [2026-08-17 22:02:37,888] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M06_metrics [2026-08-17 22:02:37,969] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:37,973] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:37,973] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:37,974] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:37,979] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:37,979] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:37,980] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:37,980] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:37,980] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:37,980] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:37,980] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:37,980] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:37,999] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:38,979] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:38,984] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:38,985] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:38,985] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:38,992] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:38,992] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:38,993] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:38,993] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:38,993] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:38,993] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:38,993] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:38,993] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:39,014] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M06_featureCounts.out [2026-08-17 22:02:39,969] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M06_metrics [2026-08-17 22:02:39,972] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M06_metrics [2026-08-17 22:02:39,977] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M06_metrics [2026-08-17 22:02:40,029] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264-M03-Fukai-s-sample_R2_001.fastq.gz [2026-08-17 22:02:40,029] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264-M03-Fukai-s-sample_R1_001.fastq.gz [2026-08-17 22:02:40,167] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M03_SJ.out.tab [2026-08-17 22:02:40,170] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M03_SJ.out.tab [2026-08-17 22:02:40,171] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M03_SJ.out.tab [2026-08-17 22:02:40,171] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M03_SJ.out.tab [2026-08-17 22:02:40,176] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M03_SJ.out.tab [2026-08-17 22:02:40,176] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M03_SJ.out.tab [2026-08-17 22:02:40,176] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M03_SJ.out.tab [2026-08-17 22:02:40,177] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M03_SJ.out.tab [2026-08-17 22:02:40,177] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M03_SJ.out.tab [2026-08-17 22:02:40,177] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M03_SJ.out.tab [2026-08-17 22:02:40,177] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M03_SJ.out.tab [2026-08-17 22:02:40,177] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M03_SJ.out.tab [2026-08-17 22:02:40,177] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G264_M03_SJ.out.tab [2026-08-17 22:02:40,177] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M03_SJ.out.tab [2026-08-17 22:02:42,282] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:42,287] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:42,288] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:42,288] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:42,295] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:42,295] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:42,295] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:42,295] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:42,296] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:42,296] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:42,296] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:42,296] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:42,316] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:43,254] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:43,258] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:43,258] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:43,258] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:43,264] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:43,264] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:43,264] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:43,264] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:43,264] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:43,264] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:43,264] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:43,264] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:43,283] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M03_featureCounts.out [2026-08-17 22:02:44,208] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264-M04-Fukai-s-sample_R2_001.fastq.gz [2026-08-17 22:02:44,208] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264-M04-Fukai-s-sample_R1_001.fastq.gz [2026-08-17 22:02:44,287] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M04_SJ.out.tab [2026-08-17 22:02:44,290] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M04_SJ.out.tab [2026-08-17 22:02:44,290] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M04_SJ.out.tab [2026-08-17 22:02:44,291] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M04_SJ.out.tab [2026-08-17 22:02:44,296] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M04_SJ.out.tab [2026-08-17 22:02:44,296] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M04_SJ.out.tab [2026-08-17 22:02:44,296] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M04_SJ.out.tab [2026-08-17 22:02:44,297] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M04_SJ.out.tab [2026-08-17 22:02:44,297] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M04_SJ.out.tab [2026-08-17 22:02:44,297] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M04_SJ.out.tab [2026-08-17 22:02:44,297] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M04_SJ.out.tab [2026-08-17 22:02:44,297] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M04_SJ.out.tab [2026-08-17 22:02:44,297] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G264_M04_SJ.out.tab [2026-08-17 22:02:44,297] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M04_SJ.out.tab [2026-08-17 22:02:46,450] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M04_marked_dup_metrics.txt [2026-08-17 22:02:46,455] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M04_marked_dup_metrics.txt [2026-08-17 22:02:46,466] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M04_marked_dup_metrics.txt [2026-08-17 22:02:46,466] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M04_marked_dup_metrics.txt [2026-08-17 22:02:46,473] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M04_marked_dup_metrics.txt [2026-08-17 22:02:46,493] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264_M04_hist.pdf [2026-08-17 22:02:46,513] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M04_metrics [2026-08-17 22:02:46,518] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M04_metrics [2026-08-17 22:02:46,519] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M04_metrics [2026-08-17 22:02:46,519] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M04_metrics [2026-08-17 22:02:46,527] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M04_metrics [2026-08-17 22:02:46,603] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:46,607] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:46,608] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:46,608] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:46,614] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:46,614] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:46,614] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:46,614] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:46,614] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:46,614] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:46,614] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:46,614] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:46,633] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:47,538] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:47,541] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:47,541] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:47,541] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:47,547] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:47,547] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:47,547] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:47,548] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:47,548] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:47,548] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:47,548] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:47,548] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:47,575] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M04_featureCounts.out [2026-08-17 22:02:48,477] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M04_metrics [2026-08-17 22:02:48,480] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M04_metrics [2026-08-17 22:02:48,485] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M04_metrics [2026-08-17 22:02:48,530] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264-M01-Fukai-s-sample_R1_001.fastq.gz [2026-08-17 22:02:48,530] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264-M01-Fukai-s-sample_R2_001.fastq.gz [2026-08-17 22:02:48,659] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M01_SJ.out.tab [2026-08-17 22:02:48,662] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M01_SJ.out.tab [2026-08-17 22:02:48,662] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M01_SJ.out.tab [2026-08-17 22:02:48,662] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M01_SJ.out.tab [2026-08-17 22:02:48,667] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M01_SJ.out.tab [2026-08-17 22:02:48,667] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M01_SJ.out.tab [2026-08-17 22:02:48,667] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M01_SJ.out.tab [2026-08-17 22:02:48,667] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M01_SJ.out.tab [2026-08-17 22:02:48,667] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M01_SJ.out.tab [2026-08-17 22:02:48,667] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M01_SJ.out.tab [2026-08-17 22:02:48,667] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M01_SJ.out.tab [2026-08-17 22:02:48,667] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M01_SJ.out.tab [2026-08-17 22:02:48,667] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G264_M01_SJ.out.tab [2026-08-17 22:02:48,667] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M01_SJ.out.tab [2026-08-17 22:02:51,035] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M01_marked_dup_metrics.txt [2026-08-17 22:02:51,039] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M01_marked_dup_metrics.txt [2026-08-17 22:02:51,040] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M01_marked_dup_metrics.txt [2026-08-17 22:02:51,040] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M01_marked_dup_metrics.txt [2026-08-17 22:02:51,046] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M01_marked_dup_metrics.txt [2026-08-17 22:02:51,060] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264_M01_hist.pdf [2026-08-17 22:02:51,087] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M01_metrics [2026-08-17 22:02:51,092] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M01_metrics [2026-08-17 22:02:51,092] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M01_metrics [2026-08-17 22:02:51,092] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M01_metrics [2026-08-17 22:02:51,098] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M01_metrics [2026-08-17 22:02:51,215] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:51,219] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:51,219] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:51,220] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:51,226] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:51,226] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:51,226] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:51,226] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:51,226] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:51,226] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:51,226] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:51,226] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:51,246] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:52,171] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:52,174] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:52,183] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:52,183] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:52,189] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:52,189] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:52,190] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:52,190] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:52,190] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:52,190] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:52,190] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:52,190] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:52,210] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M01_featureCounts.out [2026-08-17 22:02:53,122] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M01_metrics [2026-08-17 22:02:53,126] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M01_metrics [2026-08-17 22:02:53,131] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M01_metrics [2026-08-17 22:02:53,178] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264-M05-Fukai-s-sample_R2_001.fastq.gz [2026-08-17 22:02:53,179] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264-M05-Fukai-s-sample_R1_001.fastq.gz [2026-08-17 22:02:53,232] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M05_SJ.out.tab [2026-08-17 22:02:53,236] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M05_SJ.out.tab [2026-08-17 22:02:53,237] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M05_SJ.out.tab [2026-08-17 22:02:53,237] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M05_SJ.out.tab [2026-08-17 22:02:53,244] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M05_SJ.out.tab [2026-08-17 22:02:53,244] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M05_SJ.out.tab [2026-08-17 22:02:53,244] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M05_SJ.out.tab [2026-08-17 22:02:53,244] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M05_SJ.out.tab [2026-08-17 22:02:53,244] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M05_SJ.out.tab [2026-08-17 22:02:53,244] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M05_SJ.out.tab [2026-08-17 22:02:53,244] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M05_SJ.out.tab [2026-08-17 22:02:53,244] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M05_SJ.out.tab [2026-08-17 22:02:53,244] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G264_M05_SJ.out.tab [2026-08-17 22:02:53,244] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M05_SJ.out.tab [2026-08-17 22:02:55,263] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M05_marked_dup_metrics.txt [2026-08-17 22:02:55,267] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M05_marked_dup_metrics.txt [2026-08-17 22:02:55,267] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M05_marked_dup_metrics.txt [2026-08-17 22:02:55,267] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M05_marked_dup_metrics.txt [2026-08-17 22:02:55,273] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M05_marked_dup_metrics.txt [2026-08-17 22:02:55,285] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G264_M05_hist.pdf [2026-08-17 22:02:55,300] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M05_metrics [2026-08-17 22:02:55,303] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M05_metrics [2026-08-17 22:02:55,303] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M05_metrics [2026-08-17 22:02:55,303] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M05_metrics [2026-08-17 22:02:55,308] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M05_metrics [2026-08-17 22:02:55,382] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:55,385] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:55,385] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:55,385] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:55,390] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:55,390] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:55,390] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:55,390] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:55,390] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:55,390] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:55,390] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:55,390] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:55,410] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:56,370] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:56,375] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:56,375] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:56,376] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:56,381] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:56,381] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:56,381] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:56,381] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:56,381] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:56,381] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:56,381] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:56,382] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:56,401] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G264_M05_featureCounts.out [2026-08-17 22:02:57,324] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G264_M05_metrics [2026-08-17 22:02:57,328] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G264_M05_metrics [2026-08-17 22:02:57,347] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G264_M05_metrics [2026-08-17 22:02:57,413] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-17 22:02:57,417] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-17 22:02:57,421] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-17 22:02:57,441] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-17 22:02:57,444] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-17 22:02:57,449] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-17 22:02:57,468] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-08-17 22:02:57,471] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-08-17 22:02:57,499] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2026-08-17 22:02:57,503] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2026-08-17 22:02:57,508] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2026-08-17 22:02:57,523] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2026-08-17 22:02:57,525] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2026-08-17 22:02:57,546] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G264_RNAseq_G264_M01.o7164619 [2026-08-17 22:02:57,551] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G264_RNAseq_G264_M01.o7164619 [2026-08-17 22:02:57,557] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G264_RNAseq_G264_M01.o7164619 [2026-08-17 22:02:57,571] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G264_RNAseq_G264_M02.o7164621 [2026-08-17 22:02:57,573] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G264_RNAseq_G264_M02.o7164621 [2026-08-17 22:02:57,576] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G264_RNAseq_G264_M02.o7164621 [2026-08-17 22:02:57,613] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G264_RNAseq_G264_M05.o7164622 [2026-08-17 22:02:57,616] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G264_RNAseq_G264_M05.o7164622 [2026-08-17 22:02:57,620] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G264_RNAseq_G264_M05.o7164622 [2026-08-17 22:02:57,638] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G264_RNAseq_G264_M06.o7164623 [2026-08-17 22:02:57,643] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G264_RNAseq_G264_M06.o7164623 [2026-08-17 22:02:57,650] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G264_RNAseq_G264_M06.o7164623 [2026-08-17 22:02:57,664] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G264_RNAseq_G264_M04.o7164620 [2026-08-17 22:02:57,668] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G264_RNAseq_G264_M04.o7164620 [2026-08-17 22:02:57,673] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G264_RNAseq_G264_M04.o7164620 [2026-08-17 22:02:57,786] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:57,802] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:57,805] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:57,805] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:57,841] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:57,842] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:57,842] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:57,842] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:57,842] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:57,842] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:57,842] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:57,842] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:57,844] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,013] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:02:58,017] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:02:58,017] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:02:58,017] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:02:58,023] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:02:58,023] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:02:58,178] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,197] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,200] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,200] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,242] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,242] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,242] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,242] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,242] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,242] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,242] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,242] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,244] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,405] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:02:58,409] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:02:58,409] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:02:58,409] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:02:58,415] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:02:58,415] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:02:58,570] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,588] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,591] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,591] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,631] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,631] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,631] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,631] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,631] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,631] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,631] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,631] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,633] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,816] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,833] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,836] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,836] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,873] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,873] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,873] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,873] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,873] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,873] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,873] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,873] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:58,875] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,045] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,061] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,064] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,064] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,102] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,102] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,102] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,102] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,102] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,102] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,102] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,102] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,104] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,287] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,304] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,307] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,307] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,355] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,355] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,355] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,355] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,355] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,355] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,355] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,355] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,358] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,537] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,553] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,556] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,556] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,593] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,593] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,593] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,593] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,593] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,593] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,593] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,593] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,595] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:02:59,749] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:02:59,752] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:02:59,752] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:02:59,752] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:02:59,757] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:02:59,757] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:02:59,874] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:02:59,878] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:02:59,878] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:02:59,878] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:02:59,885] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:02:59,885] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:03:00,029] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,045] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,048] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,048] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,086] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,086] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,086] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,086] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,086] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,086] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,086] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,086] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,088] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,275] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,291] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,294] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,294] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,330] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,330] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,330] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,330] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,330] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,330] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,330] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,330] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,333] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,477] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:03:00,481] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:03:00,481] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:03:00,482] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:03:00,488] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:03:00,488] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2026-08-17 22:03:00,631] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,654] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,659] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,659] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,700] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,700] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,700] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,700] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,700] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,700] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,700] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,700] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,702] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-17 22:03:00,875] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-17 22:03:00,877] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-17 22:03:00,877] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-17 22:03:00,877] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-17 22:03:00,882] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-17 22:03:00,900] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2026-08-17 22:03:00,903] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2026-08-17 22:03:00,908] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2026-08-17 22:03:00,927] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-17 22:03:00,930] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-17 22:03:00,935] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-17 22:03:00,955] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-08-17 22:03:00,958] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-08-17 22:03:00,991] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M01.o7165795 [2026-08-17 22:03:00,995] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M01.o7165795 [2026-08-17 22:03:00,996] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M01.o7165795 [2026-08-17 22:03:00,996] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M01.o7165795 [2026-08-17 22:03:01,005] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M01.o7165795 [2026-08-17 22:03:01,046] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M06.o7165799 [2026-08-17 22:03:01,049] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M06.o7165799 [2026-08-17 22:03:01,050] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M06.o7165799 [2026-08-17 22:03:01,050] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M06.o7165799 [2026-08-17 22:03:01,055] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M06.o7165799 [2026-08-17 22:03:01,091] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M05.o7165798 [2026-08-17 22:03:01,095] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M05.o7165798 [2026-08-17 22:03:01,095] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M05.o7165798 [2026-08-17 22:03:01,095] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M05.o7165798 [2026-08-17 22:03:01,103] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M05.o7165798 [2026-08-17 22:03:01,137] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M04.o7165796 [2026-08-17 22:03:01,139] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M04.o7165796 [2026-08-17 22:03:01,140] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M04.o7165796 [2026-08-17 22:03:01,140] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M04.o7165796 [2026-08-17 22:03:01,146] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M04.o7165796 [2026-08-17 22:03:01,201] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M02.o7165797 [2026-08-17 22:03:01,205] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M02.o7165797 [2026-08-17 22:03:01,206] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M02.o7165797 [2026-08-17 22:03:01,206] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M02.o7165797 [2026-08-17 22:03:01,211] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G264_RNAseq_G264_M02.o7165797 [2026-08-17 22:03:01,283] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2026-08-17 22:03:01,312] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:03:01,317] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:03:01,317] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:03:01,317] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:03:01,324] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:03:01,324] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:03:01,324] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:03:01,324] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:03:01,324] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:03:01,324] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:03:01,324] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:03:01,324] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:03:01,324] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:03:01,324] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2026-08-17 22:03:02,134] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-17 22:03:02,138] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-17 22:03:02,138] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-17 22:03:02,138] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-17 22:03:02,146] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-17 22:03:02,246] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-17 22:03:02,249] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-17 22:03:02,249] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-17 22:03:02,249] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-17 22:03:02,254] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-17 22:03:04,823] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2026-08-17 22:03:04,832] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2026-08-17 22:03:04,835] multiqc [DEBUG ] No samples found: custom_content [2026-08-17 22:03:04,862] multiqc [DEBUG ] No samples found: ccs [2026-08-17 22:03:04,881] multiqc [DEBUG ] No samples found: ngsderive [2026-08-17 22:03:04,900] multiqc [DEBUG ] No samples found: purple [2026-08-17 22:03:04,909] multiqc [DEBUG ] No samples found: conpair [2026-08-17 22:03:04,925] multiqc [DEBUG ] No samples found: lima [2026-08-17 22:03:04,949] multiqc [DEBUG ] No samples found: peddy [2026-08-17 22:03:04,970] multiqc [DEBUG ] No samples found: somalier [2026-08-17 22:03:04,992] multiqc [DEBUG ] No samples found: methylQA [2026-08-17 22:03:05,040] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2026-08-17 22:03:05,041] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2026-08-17 22:03:05,041] multiqc [DEBUG ] No samples found: mosdepth [2026-08-17 22:03:05,050] multiqc [DEBUG ] No samples found: phantompeakqualtools [2026-08-17 22:03:05,070] multiqc [DEBUG ] No samples found: qualimap [2026-08-17 22:03:05,095] multiqc [DEBUG ] No samples found: preseq [2026-08-17 22:03:05,116] multiqc [DEBUG ] No samples found: quast [2026-08-17 22:03:05,146] multiqc [DEBUG ] No samples found: qorts [2026-08-17 22:03:05,167] multiqc [DEBUG ] No samples found: rna_seqc [2026-08-17 22:03:05,194] multiqc [DEBUG ] No samples found: rockhopper [2026-08-17 22:03:05,216] multiqc [DEBUG ] No samples found: rsem [2026-08-17 22:03:05,269] multiqc.modules.rseqc.rseqc [INFO ] Found 6 infer_experiment reports [2026-08-17 22:03:05,294] multiqc [DEBUG ] No samples found: busco [2026-08-17 22:03:05,322] multiqc [DEBUG ] No samples found: bustools [2026-08-17 22:03:05,341] multiqc [DEBUG ] No samples found: goleft_indexcov [2026-08-17 22:03:05,366] multiqc [DEBUG ] No samples found: gffcompare [2026-08-17 22:03:05,373] multiqc [DEBUG ] No samples found: disambiguate [2026-08-17 22:03:05,394] multiqc [DEBUG ] No samples found: supernova [2026-08-17 22:03:05,472] multiqc [DEBUG ] No samples found: deeptools [2026-08-17 22:03:05,495] multiqc [DEBUG ] No samples found: sargasso [2026-08-17 22:03:05,509] multiqc [DEBUG ] No samples found: verifybamid [2026-08-17 22:03:05,530] multiqc [DEBUG ] No samples found: mirtrace [2026-08-17 22:03:05,560] multiqc [DEBUG ] No samples found: happy [2026-08-17 22:03:05,594] multiqc [DEBUG ] No samples found: mirtop [2026-08-17 22:03:05,612] multiqc [DEBUG ] No samples found: sambamba [2026-08-17 22:03:05,635] multiqc [DEBUG ] No samples found: homer [2026-08-17 22:03:05,657] multiqc [DEBUG ] No samples found: hops [2026-08-17 22:03:05,679] multiqc [DEBUG ] No samples found: macs2 [2026-08-17 22:03:05,688] multiqc [DEBUG ] No samples found: theta2 [2026-08-17 22:03:05,734] multiqc [DEBUG ] No samples found: snpeff [2026-08-17 22:03:05,780] multiqc [DEBUG ] No samples found: gatk [2026-08-17 22:03:05,790] multiqc [DEBUG ] No samples found: htseq [2026-08-17 22:03:05,817] multiqc [DEBUG ] No samples found: bcftools [2026-08-17 22:03:05,850] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G264_M02_sorted [2026-08-17 22:03:05,851] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G264_M06_sorted [2026-08-17 22:03:05,853] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G264_M03_sorted [2026-08-17 22:03:05,854] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G264_M04_sorted [2026-08-17 22:03:05,856] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G264_M01_sorted [2026-08-17 22:03:05,857] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G264_M05_sorted [2026-08-17 22:03:05,857] multiqc.modules.featureCounts.feature_counts [INFO ] Found 6 reports [2026-08-17 22:03:05,888] multiqc [DEBUG ] No samples found: fgbio [2026-08-17 22:03:05,962] multiqc [DEBUG ] No samples found: dragen [2026-08-17 22:03:05,977] multiqc [DEBUG ] No samples found: dedup [2026-08-17 22:03:06,011] multiqc [DEBUG ] No samples found: damageprofiler [2026-08-17 22:03:06,175] multiqc [DEBUG ] No samples found: biobambam2 [2026-08-17 22:03:06,195] multiqc [DEBUG ] No samples found: jcvi [2026-08-17 22:03:06,205] multiqc [DEBUG ] No samples found: mtnucratio [2026-08-17 22:03:06,393] multiqc.modules.picard.picard [INFO ] Found 5 InsertSizeMetrics reports [2026-08-17 22:03:06,401] multiqc.modules.picard.picard [INFO ] Found 5 MarkDuplicates reports [2026-08-17 22:03:06,414] multiqc.modules.picard.picard [INFO ] Found 5 RnaSeqMetrics reports [2026-08-17 22:03:06,422] multiqc [DEBUG ] No samples found: vep [2026-08-17 22:03:06,444] multiqc [DEBUG ] No samples found: sentieon [2026-08-17 22:03:06,461] multiqc [DEBUG ] No samples found: prokka [2026-08-17 22:03:06,492] multiqc [DEBUG ] No samples found: qc3C [2026-08-17 22:03:06,512] multiqc [DEBUG ] No samples found: nanostat [2026-08-17 22:03:06,522] multiqc [DEBUG ] No samples found: samblaster [2026-08-17 22:03:06,577] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-17 22:03:06,580] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-17 22:03:06,582] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-17 22:03:06,583] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-17 22:03:06,587] multiqc.modules.samtools.samtools [INFO ] Found 19 flagstat reports [2026-08-17 22:03:06,610] multiqc [DEBUG ] No samples found: sexdeterrmine [2026-08-17 22:03:06,620] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2026-08-17 22:03:06,628] multiqc [DEBUG ] No samples found: bamtools [2026-08-17 22:03:06,637] multiqc [DEBUG ] No samples found: jellyfish [2026-08-17 22:03:06,648] multiqc [DEBUG ] No samples found: vcftools [2026-08-17 22:03:06,673] multiqc [DEBUG ] No samples found: longranger [2026-08-17 22:03:06,696] multiqc [DEBUG ] No samples found: stacks [2026-08-17 22:03:06,718] multiqc [DEBUG ] No samples found: varscan2 [2026-08-17 22:03:06,742] multiqc [DEBUG ] No samples found: snippy [2026-08-17 22:03:06,803] multiqc [DEBUG ] No samples found: bbmap [2026-08-17 22:03:06,824] multiqc [DEBUG ] No samples found: bismark [2026-08-17 22:03:06,840] multiqc [DEBUG ] No samples found: biscuit [2026-08-17 22:03:06,858] multiqc [DEBUG ] No samples found: hicexplorer [2026-08-17 22:03:06,873] multiqc [DEBUG ] No samples found: hicup [2026-08-17 22:03:06,898] multiqc [DEBUG ] No samples found: hicpro [2026-08-17 22:03:06,907] multiqc [DEBUG ] No samples found: salmon [2026-08-17 22:03:06,922] multiqc [DEBUG ] No samples found: kallisto [2026-08-17 22:03:06,941] multiqc [DEBUG ] No samples found: slamdunk [2026-08-17 22:03:07,581] multiqc.modules.star.star [INFO ] Found 6 reports and 6 gene count files [2026-08-17 22:03:07,602] multiqc [DEBUG ] No samples found: hisat2 [2026-08-17 22:03:07,627] multiqc [DEBUG ] No samples found: tophat [2026-08-17 22:03:07,647] multiqc [DEBUG ] No samples found: bowtie2 [2026-08-17 22:03:07,668] multiqc [DEBUG ] No samples found: bowtie1 [2026-08-17 22:03:07,693] multiqc [DEBUG ] No samples found: snpsplit [2026-08-17 22:03:07,714] multiqc [DEBUG ] No samples found: odgi [2026-08-17 22:03:07,738] multiqc [DEBUG ] No samples found: pangolin [2026-08-17 22:03:07,748] multiqc [DEBUG ] No samples found: kat [2026-08-17 22:03:07,756] multiqc [DEBUG ] No samples found: leehom [2026-08-17 22:03:07,780] multiqc [DEBUG ] No samples found: adapterRemoval [2026-08-17 22:03:07,790] multiqc [DEBUG ] No samples found: clipandmerge [2026-08-17 22:03:07,814] multiqc [DEBUG ] No samples found: cutadapt [2026-08-17 22:03:07,821] multiqc [DEBUG ] No samples found: flexbar [2026-08-17 22:03:07,840] multiqc [DEBUG ] No samples found: kaiju [2026-08-17 22:03:07,864] multiqc [DEBUG ] No samples found: kraken [2026-08-17 22:03:07,880] multiqc [DEBUG ] No samples found: malt [2026-08-17 22:03:07,900] multiqc [DEBUG ] No samples found: trimmomatic [2026-08-17 22:03:07,926] multiqc [DEBUG ] No samples found: sickle [2026-08-17 22:03:07,948] multiqc [DEBUG ] No samples found: skewer [2026-08-17 22:03:07,958] multiqc [DEBUG ] No samples found: sortmerna [2026-08-17 22:03:07,966] multiqc [DEBUG ] No samples found: biobloomtools [2026-08-17 22:03:07,995] multiqc [DEBUG ] No samples found: fastq_screen [2026-08-17 22:03:08,012] multiqc [DEBUG ] No samples found: afterqc [2026-08-17 22:03:08,055] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:03:08,080] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:03:08,099] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:03:08,125] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:03:08,146] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-17 22:03:08,148] multiqc.modules.fastp.fastp [INFO ] Found 5 reports [2026-08-17 22:03:10,506] multiqc.modules.fastqc.fastqc [INFO ] Found 10 reports [2026-08-17 22:03:10,507] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2026-08-17 22:03:11,136] multiqc [DEBUG ] No samples found: pychopper [2026-08-17 22:03:11,158] multiqc [DEBUG ] No samples found: pycoqc [2026-08-17 22:03:11,168] multiqc [DEBUG ] No samples found: minionqc [2026-08-17 22:03:11,186] multiqc [DEBUG ] No samples found: multivcfanalyzer [2026-08-17 22:03:11,206] multiqc [DEBUG ] No samples found: clusterflow [2026-08-17 22:03:11,232] multiqc [DEBUG ] No samples found: bcl2fastq [2026-08-17 22:03:11,261] multiqc [DEBUG ] No samples found: bclconvert [2026-08-17 22:03:11,282] multiqc [DEBUG ] No samples found: interop [2026-08-17 22:03:11,305] multiqc [DEBUG ] No samples found: ivar [2026-08-17 22:03:11,331] multiqc [DEBUG ] No samples found: flash [2026-08-17 22:03:11,366] multiqc [DEBUG ] No samples found: seqyclean [2026-08-17 22:03:11,376] multiqc [DEBUG ] No samples found: optitype [2026-08-17 22:03:11,410] multiqc [INFO ] Compressing plot data [2026-08-17 22:03:12,072] multiqc [INFO ] Report : multiqc_report.html [2026-08-17 22:03:12,072] multiqc [INFO ] Data : multiqc_data [2026-08-17 22:03:12,072] multiqc [DEBUG ] Moving data file from '/scratch/tmpc4rsusld/multiqc_data' to '/projectnb/wax-dk/max/G260_G264_RNAseq/G264_RNAseq/Scripts/99_final_summary/G264_RNAseq_multiqc_report/multiqc_data' [2026-08-17 22:03:12,663] multiqc [INFO ] MultiQC complete