[2026-08-19 08:06:15,470] multiqc [DEBUG ] This is MultiQC v1.11 [2026-08-19 08:06:15,471] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2026-08-19 08:06:15,471] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2026-08-19 08:06:15,471] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2026-08-19 08:06:15,472] multiqc [DEBUG ] Loading config settings from: /projectnb/wax-dk/max/G260_G264_RNAseq/G262v2_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2026-08-19 08:06:15,473] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2026-08-19 08:06:15,473] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2026-08-19 08:06:15,473] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G260_G264_RNAseq/G262v2_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G260_G264_RNAseq/G262v2_RNAseq/SAMPLES /projectnb/wax-dk/max/G260_G264_RNAseq/G262v2_RNAseq/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G260_G264_RNAseq/G262v2_RNAseq/Scripts/06_CollectMetrics/ [2026-08-19 08:06:16,065] multiqc [WARNING] MultiQC Version v1.35 now available! [2026-08-19 08:06:16,065] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G260_G264_RNAseq/G262v2_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G260_G264_RNAseq/G262v2_RNAseq/SAMPLES /projectnb/wax-dk/max/G260_G264_RNAseq/G262v2_RNAseq/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G260_G264_RNAseq/G262v2_RNAseq/Scripts/06_CollectMetrics/ [2026-08-19 08:06:16,065] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G260_G264_RNAseq/G262v2_RNAseq/Scripts/99_final_summary/G262v2_RNAseq_multiqc_report [2026-08-19 08:06:16,066] multiqc [DEBUG ] Template : default [2026-08-19 08:06:16,066] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2026-08-19 08:06:16,066] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2026-08-19 08:06:16,067] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpws_1xah9 [2026-08-19 08:06:16,410] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G260_G264_RNAseq/G262v2_RNAseq/SAMPLES [2026-08-19 08:06:16,410] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G260_G264_RNAseq/G262v2_RNAseq/Scripts/03_FASTQC [2026-08-19 08:06:16,410] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G260_G264_RNAseq/G262v2_RNAseq/Scripts/06_CollectMetrics [2026-08-19 08:06:16,650] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M12-ERalpha-fl-fl_R1_001.fastq.gz [2026-08-19 08:06:16,651] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M12-ERalpha-fl-fl_R2_001.fastq.gz [2026-08-19 08:06:16,747] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:16,750] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:16,751] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:16,751] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:16,755] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:16,755] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:16,756] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:16,756] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:16,756] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:16,756] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:16,756] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:16,756] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:16,774] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:17,701] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:17,705] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:17,714] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:17,714] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:17,721] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:17,721] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:17,721] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:17,721] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:17,721] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:17,722] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:17,722] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:17,722] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:17,743] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-19 08:06:18,634] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M26-GHR-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:06:18,634] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M26-GHR-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:06:18,704] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:18,707] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:18,708] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:18,708] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:18,715] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:18,715] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:18,715] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:18,715] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:18,715] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:18,715] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:18,715] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:18,715] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:18,735] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:19,661] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:19,664] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:19,665] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:19,665] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:19,671] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:19,671] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:19,671] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:19,671] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:19,672] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:19,672] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:19,672] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:19,672] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:19,690] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-19 08:06:20,606] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M11-ERalpha-fl-fl_R1_001.fastq.gz [2026-08-19 08:06:20,606] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M11-ERalpha-fl-fl_R2_001.fastq.gz [2026-08-19 08:06:20,667] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:20,670] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:20,670] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:20,670] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:20,674] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:20,674] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:20,674] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:20,674] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:20,674] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:20,674] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:20,674] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:20,674] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:20,693] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:21,605] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:21,609] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:21,610] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:21,610] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:21,615] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:21,615] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:21,615] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:21,615] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:21,615] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:21,615] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:21,615] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:21,615] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:21,634] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-19 08:06:22,511] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M25-GHR-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:06:22,511] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M25-GHR-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:06:22,575] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:22,579] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:22,579] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:22,579] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:22,585] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:22,585] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:22,585] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:22,585] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:22,585] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:22,585] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:22,585] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:22,585] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:22,604] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:23,510] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:23,513] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:23,514] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:23,514] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:23,520] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:23,521] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:23,521] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:23,521] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:23,521] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:23,521] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:23,521] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:23,521] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:23,540] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-19 08:06:24,432] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M17-ERalpha-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:06:24,432] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M17-ERalpha-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:06:24,511] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:24,515] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:24,515] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:24,516] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:24,522] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:24,522] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:24,522] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:24,522] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:24,522] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:24,522] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:24,522] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:24,522] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:24,541] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:25,442] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:25,447] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:25,447] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:25,447] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:25,452] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:25,452] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:25,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:25,452] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:25,452] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:25,452] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:25,452] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:25,452] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:25,472] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-19 08:06:26,344] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M10-GHR-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:06:26,344] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M10-GHR-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:06:26,398] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:26,401] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:26,401] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:26,401] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:26,406] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:26,406] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:26,406] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:26,406] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:26,407] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:26,407] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:26,407] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:26,407] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:26,425] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:27,343] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:27,347] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:27,347] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:27,347] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:27,352] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:27,352] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:27,352] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:27,352] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:27,352] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:27,352] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:27,352] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:27,352] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:27,372] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-19 08:06:28,289] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M02-GHR-fl-fl_R1_001.fastq.gz [2026-08-19 08:06:28,289] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M02-GHR-fl-fl_R2_001.fastq.gz [2026-08-19 08:06:28,366] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:28,370] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:28,370] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:28,370] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:28,375] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:28,375] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:28,375] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:28,375] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:28,375] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:28,375] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:28,375] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:28,375] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:28,394] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:29,304] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:29,308] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:29,322] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:29,322] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:29,329] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:29,329] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:29,329] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:29,329] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:29,329] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:29,329] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:29,329] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:29,329] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:29,351] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-19 08:06:30,233] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M39-ERalpha-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:06:30,234] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M39-ERalpha-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:06:30,301] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:30,305] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:30,306] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:30,306] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:30,312] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:30,312] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:30,312] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:30,312] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:30,312] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:30,312] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:30,313] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:30,313] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:30,332] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:31,246] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:31,250] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:31,251] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:31,251] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:31,256] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:31,256] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:31,256] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:31,256] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:31,256] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:31,256] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:31,256] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:31,257] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:31,274] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-19 08:06:32,164] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M16-ERalpha-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:06:32,164] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M16-ERalpha-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:06:32,225] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:32,229] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:32,229] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:32,230] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:32,234] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:32,235] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:32,235] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:32,235] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:32,235] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:32,235] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:32,235] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:32,235] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:32,253] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:33,149] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:33,153] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:33,153] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:33,153] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:33,160] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:33,160] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:33,160] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:33,160] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:33,160] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:33,160] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:33,160] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:33,160] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:33,180] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-19 08:06:34,070] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M01-GHR-fl-fl_R1_001.fastq.gz [2026-08-19 08:06:34,070] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M01-GHR-fl-fl_R2_001.fastq.gz [2026-08-19 08:06:34,143] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:34,147] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:34,148] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:34,148] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:34,154] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:34,154] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:34,154] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:34,154] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:34,154] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:34,155] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:34,155] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:34,155] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:34,179] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:35,103] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:35,107] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:35,121] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:35,122] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:35,127] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:35,127] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:35,127] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:35,128] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:35,128] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:35,128] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:35,128] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:35,128] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:35,149] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-19 08:06:36,056] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M51-GHR-ERa-fl-fl_R2_001.fastq.gz [2026-08-19 08:06:36,056] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M51-GHR-ERa-fl-fl_R1_001.fastq.gz [2026-08-19 08:06:36,113] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:36,116] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:36,117] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:36,117] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:36,122] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:36,122] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:36,122] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:36,122] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:36,123] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:36,123] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:36,123] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:36,123] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:36,143] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:37,047] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:37,051] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:37,051] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:37,051] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:37,057] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:37,057] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:37,057] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:37,057] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:37,057] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:37,057] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:37,057] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:37,058] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:37,076] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-19 08:06:38,033] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M50-GHR-ERa-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:06:38,033] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M50-GHR-ERa-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:06:38,098] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:38,102] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:38,102] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:38,102] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:38,108] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:38,108] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:38,108] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:38,108] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:38,108] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:38,108] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:38,109] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:38,109] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:38,126] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:39,039] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:39,043] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:39,043] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:39,043] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:39,050] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:39,050] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:39,050] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:39,050] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:39,050] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:39,050] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:39,050] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:39,050] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:39,069] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-19 08:06:39,990] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M29-GHR-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:06:39,990] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M29-GHR-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:06:40,035] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:40,039] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:40,039] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:40,039] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:40,044] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:40,044] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:40,044] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:40,044] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:40,044] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:40,044] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:40,044] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:40,044] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:40,063] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:40,978] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:40,981] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:40,981] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:40,981] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:40,987] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:40,987] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:40,987] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:40,987] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:40,987] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:40,987] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:40,987] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:40,987] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:41,005] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-19 08:06:41,916] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M06-GHR-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:06:41,916] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M06-GHR-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:06:41,959] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:41,963] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:41,963] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:41,963] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:41,969] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:41,969] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:41,970] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:41,970] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:41,970] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:41,970] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:41,970] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:41,970] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:41,989] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:42,888] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:42,891] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:42,891] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:42,891] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:42,896] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:42,896] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:42,896] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:42,896] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:42,896] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:42,896] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:42,896] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:42,897] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:42,914] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-19 08:06:43,824] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M05-GHR-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:06:43,825] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M05-GHR-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:06:43,870] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:43,873] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:43,874] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:43,874] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:43,879] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:43,880] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:43,880] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:43,880] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:43,880] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:43,880] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:43,880] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:43,880] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:43,898] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:44,819] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:44,823] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:44,824] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:44,824] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:44,831] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:44,831] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:44,831] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:44,831] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:44,832] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:44,832] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:44,832] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:44,832] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:44,851] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-19 08:06:45,774] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M55-GHR-ERa-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:06:45,774] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M55-GHR-ERa-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:06:45,852] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:45,856] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:45,857] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:45,857] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:45,863] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:45,863] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:45,863] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:45,863] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:45,863] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:45,863] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:45,863] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:45,863] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:45,883] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:46,812] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:46,815] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:46,816] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:46,816] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:46,823] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:46,823] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:46,823] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:46,823] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:46,823] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:46,823] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:46,823] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:46,823] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:46,843] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-19 08:06:47,767] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M40-ERalpha-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:06:47,768] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M40-ERalpha-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:06:47,816] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:47,820] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:47,820] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:47,821] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:47,825] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:47,825] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:47,826] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:47,826] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:47,826] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:47,826] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:47,826] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:47,826] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:47,845] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:48,760] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:48,764] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:48,765] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:48,765] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:48,772] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:48,772] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:48,772] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:48,772] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:48,772] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:48,772] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:48,772] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:48,772] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:48,792] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-19 08:06:49,709] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M19-ERalpha-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:06:49,709] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M19-ERalpha-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:06:49,753] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:49,757] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:49,758] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:49,758] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:49,764] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:49,764] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:49,764] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:49,764] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:49,764] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:49,764] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:49,764] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:49,764] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:49,783] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:50,693] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:50,697] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:50,698] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:50,698] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:50,703] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:50,703] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:50,704] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:50,704] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:50,704] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:50,704] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:50,704] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:50,704] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:50,723] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-19 08:06:51,647] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M04-GHR-fl-fl_R2_001.fastq.gz [2026-08-19 08:06:51,647] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M04-GHR-fl-fl_R1_001.fastq.gz [2026-08-19 08:06:51,714] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:51,718] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:51,719] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:51,719] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:51,724] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:51,724] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:51,724] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:51,724] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:51,725] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:51,725] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:51,725] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:51,725] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:51,744] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:52,670] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:52,675] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:52,675] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:52,675] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:52,681] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:52,681] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:52,681] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:52,681] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:52,681] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:52,681] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:52,681] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:52,681] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:52,701] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-19 08:06:53,605] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M54-GHR-ERa-fl-fl_R2_001.fastq.gz [2026-08-19 08:06:53,605] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M54-GHR-ERa-fl-fl_R1_001.fastq.gz [2026-08-19 08:06:53,657] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:53,660] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:53,660] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:53,660] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:53,665] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:53,665] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:53,665] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:53,665] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:53,665] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:53,665] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:53,665] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:53,666] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:53,684] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:54,606] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:54,609] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:54,610] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:54,610] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:54,615] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:54,615] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:54,616] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:54,616] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:54,616] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:54,616] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:54,616] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:54,616] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:54,634] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-19 08:06:55,549] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M18-ERalpha-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:06:55,550] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M18-ERalpha-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:06:55,617] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:55,621] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:55,621] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:55,622] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:55,628] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:55,628] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:55,628] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:55,628] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:55,628] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:55,628] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:55,628] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:55,628] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:55,647] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:56,580] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:56,584] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:56,585] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:56,585] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:56,592] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:56,592] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:56,592] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:56,592] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:56,592] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:56,592] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:56,593] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:56,593] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:56,615] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-19 08:06:57,521] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M03-GHR-fl-fl_R1_001.fastq.gz [2026-08-19 08:06:57,522] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M03-GHR-fl-fl_R2_001.fastq.gz [2026-08-19 08:06:57,569] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:57,573] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:57,574] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:57,574] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:57,579] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:57,580] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:57,580] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:57,580] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:57,580] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:57,580] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:57,580] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:57,580] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:57,599] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:58,534] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:58,538] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:58,538] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:58,538] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:58,543] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:58,543] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:58,543] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:58,544] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:58,544] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:58,544] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:58,544] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:58,544] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:58,562] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-19 08:06:59,496] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M53-GHR-ERa-fl-fl_R2_001.fastq.gz [2026-08-19 08:06:59,496] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M53-GHR-ERa-fl-fl_R1_001.fastq.gz [2026-08-19 08:06:59,539] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:06:59,543] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:06:59,544] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:06:59,544] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:06:59,550] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:06:59,550] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:06:59,550] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:06:59,550] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:06:59,550] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:06:59,550] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:06:59,550] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:06:59,550] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:06:59,569] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:07:00,475] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:07:00,479] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:07:00,480] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:07:00,480] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:07:00,487] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:07:00,487] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:07:00,487] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:07:00,487] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:07:00,487] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:07:00,487] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:07:00,487] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:07:00,487] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:07:00,506] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-19 08:07:01,445] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M09-GHR-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:07:01,449] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M09-GHR-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:07:01,524] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:01,528] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:01,528] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:01,528] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:01,533] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:01,534] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:01,534] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:01,534] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:01,534] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:01,534] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:01,534] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:01,534] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:01,552] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:02,546] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:02,549] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:02,550] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:02,550] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:02,556] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:02,556] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:02,556] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:02,556] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:02,556] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:02,556] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:02,556] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:02,556] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:02,575] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-19 08:07:03,526] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M59-GHR-ERa-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:07:03,526] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M59-GHR-ERa-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:07:03,577] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:03,580] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:03,581] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:03,581] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:03,586] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:03,587] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:03,587] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:03,587] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:03,587] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:03,587] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:03,587] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:03,587] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:03,605] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:04,526] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:04,529] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:04,529] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:04,529] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:04,534] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:04,534] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:04,534] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:04,534] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:04,534] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:04,534] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:04,534] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:04,534] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:04,552] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-19 08:07:05,508] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M52-GHR-ERa-fl-fl_R2_001.fastq.gz [2026-08-19 08:07:05,511] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M52-GHR-ERa-fl-fl_R1_001.fastq.gz [2026-08-19 08:07:05,576] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:05,580] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:05,580] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:05,580] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:05,587] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:05,587] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:05,587] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:05,587] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:05,587] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:05,587] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:05,587] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:05,587] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:05,613] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:06,555] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:06,559] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:06,560] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:06,560] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:06,567] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:06,567] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:06,567] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:06,567] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:06,568] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:06,568] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:06,568] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:06,568] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:06,589] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-19 08:07:07,561] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M44-GHR-ERa-fl-fl_R2_001.fastq.gz [2026-08-19 08:07:07,564] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M44-GHR-ERa-fl-fl_R1_001.fastq.gz [2026-08-19 08:07:07,611] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:07,615] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:07,616] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:07,616] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:07,622] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:07,622] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:07,622] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:07,622] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:07,622] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:07,622] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:07,622] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:07,622] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:07,641] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:08,609] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:08,614] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:08,621] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:08,621] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:08,628] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:08,628] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:08,628] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:08,628] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:08,628] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:08,628] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:08,629] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:08,629] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:08,650] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-19 08:07:09,577] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M08-GHR-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:07:09,580] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M08-GHR-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:07:09,628] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:09,631] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:09,632] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:09,632] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:09,638] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:09,638] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:09,639] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:09,639] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:09,639] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:09,639] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:09,639] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:09,639] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:09,658] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:10,568] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:10,572] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:10,572] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:10,573] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:10,579] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:10,579] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:10,579] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:10,579] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:10,579] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:10,579] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:10,579] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:10,579] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:10,599] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-19 08:07:11,518] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M58-GHR-ERa-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:07:11,520] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M58-GHR-ERa-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:07:11,587] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:11,591] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:11,591] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:11,591] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:11,597] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:11,597] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:11,598] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:11,598] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:11,598] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:11,598] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:11,598] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:11,598] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:11,617] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:12,533] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:12,535] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:12,536] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:12,536] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:12,540] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:12,540] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:12,540] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:12,540] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:12,540] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:12,540] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:12,540] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:12,540] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:12,559] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-19 08:07:13,468] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M43-GHR-ERa-fl-fl_R1_001.fastq.gz [2026-08-19 08:07:13,471] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M43-GHR-ERa-fl-fl_R2_001.fastq.gz [2026-08-19 08:07:13,512] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:13,516] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:13,517] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:13,517] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:13,524] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:13,524] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:13,524] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:13,524] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:13,524] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:13,524] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:13,524] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:13,524] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:13,545] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:14,470] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:14,474] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:14,488] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:14,488] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:14,493] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:14,494] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:14,494] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:14,494] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:14,494] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:14,494] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:14,494] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:14,494] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:14,516] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-19 08:07:15,445] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M07-GHR-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:07:15,448] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M07-GHR-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:07:15,506] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:15,510] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:15,510] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:15,510] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:15,517] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:15,517] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:15,517] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:15,517] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:15,517] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:15,517] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:15,517] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:15,517] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:15,536] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:16,446] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:16,450] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:16,451] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:16,451] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:16,457] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:16,457] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:16,457] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:16,457] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:16,457] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:16,458] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:16,458] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:16,458] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:16,477] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-19 08:07:17,406] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M57-GHR-ERa-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:07:17,409] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M57-GHR-ERa-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:07:17,491] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:17,495] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:17,496] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:17,496] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:17,501] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:17,501] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:17,501] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:17,501] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:17,501] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:17,501] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:17,501] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:17,502] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:17,520] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:18,431] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:18,435] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:18,436] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:18,436] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:18,441] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:18,441] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:18,441] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:18,442] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:18,442] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:18,442] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:18,442] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:18,442] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:18,460] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-19 08:07:19,356] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M42-GHR-ERa-fl-fl_R2_001.fastq.gz [2026-08-19 08:07:19,359] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M42-GHR-ERa-fl-fl_R1_001.fastq.gz [2026-08-19 08:07:19,425] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:19,428] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:19,429] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:19,429] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:19,436] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:19,436] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:19,436] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:19,436] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:19,436] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:19,436] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:19,436] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:19,436] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:19,455] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:20,354] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:20,358] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:20,358] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:20,359] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:20,365] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:20,365] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:20,365] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:20,365] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:20,365] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:20,365] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:20,365] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:20,365] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:20,385] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-19 08:07:21,283] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M34-ERalpha-fl-fl_R2_001.fastq.gz [2026-08-19 08:07:21,286] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M34-ERalpha-fl-fl_R1_001.fastq.gz [2026-08-19 08:07:21,333] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:21,337] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:21,337] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:21,337] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:21,344] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:21,344] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:21,344] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:21,344] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:21,344] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:21,344] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:21,344] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:21,344] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:21,363] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:22,269] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:22,273] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:22,274] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:22,274] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:22,279] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:22,279] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:22,279] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:22,279] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:22,279] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:22,279] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:22,279] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:22,279] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:22,297] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-19 08:07:23,211] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M56-GHR-ERa-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:07:23,214] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M56-GHR-ERa-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:07:23,291] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:23,295] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:23,295] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:23,295] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:23,301] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:23,301] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:23,301] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:23,301] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:23,301] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:23,301] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:23,301] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:23,301] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:23,319] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:24,224] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:24,229] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:24,229] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:24,229] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:24,235] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:24,235] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:24,235] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:24,235] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:24,235] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:24,236] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:24,236] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:24,236] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:24,254] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-19 08:07:25,138] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M48-GHR-ERa-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:07:25,141] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M48-GHR-ERa-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:07:25,218] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:25,222] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:25,223] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:25,223] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:25,227] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:25,228] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:25,228] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:25,228] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:25,228] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:25,228] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:25,228] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:25,228] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:25,246] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:26,158] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:26,162] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:26,163] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:26,163] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:26,167] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:26,167] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:26,168] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:26,168] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:26,168] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:26,168] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:26,168] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:26,168] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:26,187] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-19 08:07:27,084] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M41-GHR-ERa-fl-fl_R2_001.fastq.gz [2026-08-19 08:07:27,087] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M41-GHR-ERa-fl-fl_R1_001.fastq.gz [2026-08-19 08:07:27,139] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:27,143] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:27,143] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:27,144] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:27,148] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:27,149] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:27,149] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:27,149] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:27,149] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:27,149] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:27,149] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:27,149] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:27,167] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:28,067] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:28,071] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:28,072] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:28,072] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:28,077] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:28,077] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:28,077] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:28,077] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:28,077] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:28,077] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:28,077] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:28,077] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:28,096] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-19 08:07:29,035] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M33-ERalpha-fl-fl_R1_001.fastq.gz [2026-08-19 08:07:29,038] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M33-ERalpha-fl-fl_R2_001.fastq.gz [2026-08-19 08:07:29,126] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:29,130] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:29,131] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:29,131] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:29,137] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:29,137] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:29,137] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:29,137] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:29,137] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:29,137] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:29,137] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:29,137] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:29,156] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:30,066] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:30,070] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:30,070] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:30,070] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:30,076] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:30,076] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:30,076] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:30,076] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:30,076] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:30,076] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:30,076] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:30,077] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:30,095] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-19 08:07:31,002] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M47-GHR-ERa-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:07:31,004] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M47-GHR-ERa-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:07:31,144] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:31,147] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:31,147] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:31,147] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:31,153] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:31,153] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:31,153] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:31,153] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:31,153] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:31,153] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:31,153] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:31,153] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:31,171] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:32,105] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:32,108] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:32,109] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:32,109] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:32,116] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:32,116] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:32,116] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:32,116] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:32,116] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:32,116] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:32,116] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:32,116] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:32,135] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-19 08:07:33,072] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M32-ERalpha-fl-fl_R1_001.fastq.gz [2026-08-19 08:07:33,075] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M32-ERalpha-fl-fl_R2_001.fastq.gz [2026-08-19 08:07:33,132] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:33,135] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:33,136] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:33,136] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:33,141] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:33,141] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:33,141] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:33,141] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:33,141] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:33,141] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:33,141] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:33,141] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:33,160] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:34,080] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:34,084] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:34,084] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:34,084] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:34,090] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:34,090] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:34,090] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:34,090] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:34,090] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:34,090] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:34,090] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:34,090] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:34,110] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-19 08:07:35,022] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M46-GHR-ERa-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:07:35,028] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M46-GHR-ERa-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:07:35,115] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:35,119] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:35,119] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:35,119] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:35,125] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:35,125] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:35,125] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:35,125] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:35,125] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:35,126] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:35,126] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:35,126] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:35,144] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:36,071] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:36,075] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:36,088] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:36,088] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:36,095] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:36,095] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:36,096] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:36,096] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:36,096] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:36,096] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:36,096] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:36,096] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:36,118] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-19 08:07:37,027] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M31-ERalpha-fl-fl_R1_001.fastq.gz [2026-08-19 08:07:37,033] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M31-ERalpha-fl-fl_R2_001.fastq.gz [2026-08-19 08:07:37,085] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:37,089] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:37,089] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:37,089] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:37,096] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:37,096] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:37,096] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:37,096] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:37,096] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:37,096] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:37,096] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:37,096] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:37,115] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:38,022] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:38,026] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:38,026] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:38,026] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:38,032] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:38,032] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:38,032] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:38,032] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:38,032] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:38,032] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:38,032] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:38,032] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:38,050] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-19 08:07:38,982] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M23-GHR-fl-fl_R1_001.fastq.gz [2026-08-19 08:07:38,984] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M23-GHR-fl-fl_R2_001.fastq.gz [2026-08-19 08:07:39,045] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:39,048] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:39,049] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:39,049] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:39,055] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:39,056] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:39,056] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:39,056] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:39,056] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:39,056] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:39,056] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:39,056] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:39,075] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:39,989] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:39,993] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:39,994] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:39,994] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:39,999] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:39,999] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:39,999] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:39,999] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:40,000] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:40,000] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:40,000] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:40,000] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:40,018] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-19 08:07:40,946] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M45-GHR-ERa-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:07:40,949] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M45-GHR-ERa-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:07:41,029] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:41,033] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:41,033] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:41,034] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:41,039] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:41,039] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:41,039] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:41,039] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:41,039] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:41,039] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:41,039] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:41,039] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:41,058] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:41,988] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:41,992] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:41,992] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:41,993] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:41,999] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:41,999] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:41,999] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:41,999] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:41,999] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:41,999] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:41,999] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:41,999] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:42,018] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-19 08:07:42,921] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M37-ERalpha-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:07:42,924] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M37-ERalpha-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:07:42,991] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:42,994] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:42,994] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:42,994] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:42,998] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:42,999] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:42,999] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:42,999] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:42,999] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:42,999] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:42,999] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:42,999] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:43,017] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:43,930] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:43,934] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:43,934] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:43,934] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:43,939] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:43,939] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:43,939] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:43,939] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:43,939] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:43,940] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:43,940] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:43,940] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:43,958] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-19 08:07:44,856] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M30-GHR-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:07:44,859] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M30-GHR-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:07:44,937] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:44,941] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:44,942] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:44,942] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:44,947] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:44,947] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:44,948] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:44,948] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:44,948] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:44,948] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:44,948] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:44,948] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:44,967] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:45,882] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:45,885] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:45,885] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:45,885] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:45,891] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:45,891] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:45,891] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:45,891] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:45,891] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:45,891] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:45,892] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:45,892] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:45,909] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-19 08:07:46,820] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M22-GHR-fl-fl_R1_001.fastq.gz [2026-08-19 08:07:46,822] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M22-GHR-fl-fl_R2_001.fastq.gz [2026-08-19 08:07:46,898] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:46,900] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:46,901] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:46,901] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:46,906] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:46,906] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:46,906] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:46,906] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:46,907] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:46,907] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:46,907] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:46,907] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:46,924] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:47,824] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:47,827] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:47,827] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:47,827] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:47,832] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:47,832] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:47,832] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:47,832] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:47,832] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:47,832] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:47,832] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:47,832] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:47,849] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-19 08:07:48,728] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M36-ERalpha-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:07:48,731] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M36-ERalpha-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:07:48,782] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:48,785] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:48,785] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:48,785] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:48,791] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:48,792] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:48,792] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:48,792] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:48,792] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:48,792] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:48,792] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:48,792] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:48,810] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:49,720] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:49,723] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:49,724] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:49,724] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:49,729] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:49,729] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:49,729] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:49,729] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:49,729] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:49,729] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:49,730] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:49,730] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:49,748] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-19 08:07:50,688] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M21-GHR-fl-fl_R1_001.fastq.gz [2026-08-19 08:07:50,691] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M21-GHR-fl-fl_R2_001.fastq.gz [2026-08-19 08:07:50,766] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:50,770] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:50,770] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:50,770] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:50,776] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:50,776] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:50,776] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:50,776] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:50,776] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:50,776] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:50,776] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:50,776] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:50,795] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:51,702] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:51,706] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:51,707] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:51,707] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:51,714] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:51,714] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:51,714] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:51,714] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:51,714] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:51,714] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:51,714] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:51,714] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:51,734] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-19 08:07:52,623] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M13-ERalpha-fl-fl_R1_001.fastq.gz [2026-08-19 08:07:52,626] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M13-ERalpha-fl-fl_R2_001.fastq.gz [2026-08-19 08:07:52,683] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:52,687] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:52,687] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:52,687] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:52,693] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:52,694] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:52,694] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:52,694] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:52,694] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:52,694] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:52,694] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:52,694] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:52,713] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:53,624] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:53,629] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:53,629] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:53,629] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:53,635] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:53,635] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:53,635] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:53,635] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:53,635] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:53,635] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:53,635] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:53,635] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:53,654] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-19 08:07:54,557] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M35-ERalpha-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:07:54,560] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M35-ERalpha-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:07:54,635] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:54,639] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:54,639] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:54,640] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:54,644] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:54,645] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:54,645] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:54,645] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:54,645] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:54,645] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:54,645] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:54,645] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:54,663] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:55,547] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:55,550] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:55,551] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:55,551] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:55,556] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:55,556] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:55,556] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:55,556] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:55,556] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:55,556] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:55,556] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:55,556] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:55,574] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-19 08:07:56,482] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M27-GHR-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:07:56,485] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M27-GHR-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:07:56,539] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:56,542] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:56,542] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:56,543] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:56,548] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:56,548] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:56,549] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:56,549] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:56,549] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:56,549] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:56,549] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:56,549] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:56,567] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:57,498] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:57,501] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:57,501] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:57,501] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:57,507] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:57,507] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:57,507] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:57,507] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:57,507] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:57,507] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:57,507] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:57,507] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:57,526] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-19 08:07:58,467] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M20-ERalpha-fl-fl-KO_R2_001.fastq.gz [2026-08-19 08:07:58,470] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M20-ERalpha-fl-fl-KO_R1_001.fastq.gz [2026-08-19 08:07:58,543] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:58,547] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:58,547] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:58,548] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:58,554] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:58,554] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:58,554] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:58,554] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:58,554] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:58,554] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:58,554] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:58,554] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:58,574] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:59,501] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:59,504] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:59,505] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:59,505] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:59,512] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:59,512] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:59,512] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:59,512] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:59,512] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:59,512] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:59,512] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:59,512] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:07:59,532] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-19 08:08:00,463] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-19 08:08:00,465] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-19 08:08:00,469] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-19 08:08:00,481] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-19 08:08:00,483] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-19 08:08:00,487] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-19 08:08:00,499] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-08-19 08:08:00,501] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-08-19 08:08:00,516] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2026-08-19 08:08:00,518] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2026-08-19 08:08:00,522] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2026-08-19 08:08:00,534] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2026-08-19 08:08:00,536] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2026-08-19 08:08:00,589] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-19 08:08:00,592] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-19 08:08:00,593] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-19 08:08:00,593] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-19 08:08:00,598] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-19 08:08:00,612] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2026-08-19 08:08:00,614] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2026-08-19 08:08:00,618] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2026-08-19 08:08:00,629] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-19 08:08:00,632] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-19 08:08:00,636] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-19 08:08:00,647] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-08-19 08:08:00,649] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-08-19 08:08:00,686] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2026-08-19 08:08:00,688] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2026-08-19 08:08:00,689] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2026-08-19 08:08:00,689] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2026-08-19 08:08:00,694] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2026-08-19 08:08:00,694] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2026-08-19 08:08:00,694] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2026-08-19 08:08:00,694] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2026-08-19 08:08:00,694] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2026-08-19 08:08:00,694] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2026-08-19 08:08:00,694] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2026-08-19 08:08:00,694] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2026-08-19 08:08:00,694] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2026-08-19 08:08:00,694] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2026-08-19 08:08:01,502] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-19 08:08:01,506] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-19 08:08:01,507] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-19 08:08:01,507] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-19 08:08:01,513] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-19 08:08:01,565] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-19 08:08:01,568] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-19 08:08:01,569] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-19 08:08:01,569] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-19 08:08:01,576] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-19 08:08:04,045] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2026-08-19 08:08:04,067] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2026-08-19 08:08:04,070] multiqc [DEBUG ] No samples found: custom_content [2026-08-19 08:08:04,096] multiqc [DEBUG ] No samples found: ccs [2026-08-19 08:08:04,115] multiqc [DEBUG ] No samples found: ngsderive [2026-08-19 08:08:04,143] multiqc [DEBUG ] No samples found: purple [2026-08-19 08:08:04,152] multiqc [DEBUG ] No samples found: conpair [2026-08-19 08:08:04,170] multiqc [DEBUG ] No samples found: lima [2026-08-19 08:08:04,194] multiqc [DEBUG ] No samples found: peddy [2026-08-19 08:08:04,222] multiqc [DEBUG ] No samples found: somalier [2026-08-19 08:08:04,246] multiqc [DEBUG ] No samples found: methylQA [2026-08-19 08:08:04,292] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2026-08-19 08:08:04,292] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2026-08-19 08:08:04,293] multiqc [DEBUG ] No samples found: mosdepth [2026-08-19 08:08:04,302] multiqc [DEBUG ] No samples found: phantompeakqualtools [2026-08-19 08:08:04,328] multiqc [DEBUG ] No samples found: qualimap [2026-08-19 08:08:04,352] multiqc [DEBUG ] No samples found: preseq [2026-08-19 08:08:04,383] multiqc [DEBUG ] No samples found: quast [2026-08-19 08:08:04,412] multiqc [DEBUG ] No samples found: qorts [2026-08-19 08:08:04,435] multiqc [DEBUG ] No samples found: rna_seqc [2026-08-19 08:08:04,463] multiqc [DEBUG ] No samples found: rockhopper [2026-08-19 08:08:04,477] multiqc [DEBUG ] No samples found: rsem [2026-08-19 08:08:04,569] multiqc.modules.rseqc.rseqc [INFO ] Found 53 infer_experiment reports [2026-08-19 08:08:04,599] multiqc [DEBUG ] No samples found: busco [2026-08-19 08:08:04,615] multiqc [DEBUG ] No samples found: bustools [2026-08-19 08:08:04,642] multiqc [DEBUG ] No samples found: goleft_indexcov [2026-08-19 08:08:04,665] multiqc [DEBUG ] No samples found: gffcompare [2026-08-19 08:08:04,674] multiqc [DEBUG ] No samples found: disambiguate [2026-08-19 08:08:04,699] multiqc [DEBUG ] No samples found: supernova [2026-08-19 08:08:04,777] multiqc [DEBUG ] No samples found: deeptools [2026-08-19 08:08:04,801] multiqc [DEBUG ] No samples found: sargasso [2026-08-19 08:08:04,811] multiqc [DEBUG ] No samples found: verifybamid [2026-08-19 08:08:04,827] multiqc [DEBUG ] No samples found: mirtrace [2026-08-19 08:08:04,847] multiqc [DEBUG ] No samples found: happy [2026-08-19 08:08:04,877] multiqc [DEBUG ] No samples found: mirtop [2026-08-19 08:08:04,907] multiqc [DEBUG ] No samples found: sambamba [2026-08-19 08:08:04,928] multiqc [DEBUG ] No samples found: homer [2026-08-19 08:08:04,949] multiqc [DEBUG ] No samples found: hops [2026-08-19 08:08:04,963] multiqc [DEBUG ] No samples found: macs2 [2026-08-19 08:08:04,971] multiqc [DEBUG ] No samples found: theta2 [2026-08-19 08:08:04,991] multiqc [DEBUG ] No samples found: snpeff [2026-08-19 08:08:05,031] multiqc [DEBUG ] No samples found: gatk [2026-08-19 08:08:05,041] multiqc [DEBUG ] No samples found: htseq [2026-08-19 08:08:05,060] multiqc [DEBUG ] No samples found: bcftools [2026-08-19 08:08:05,086] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M12_sorted [2026-08-19 08:08:05,089] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M26_sorted [2026-08-19 08:08:05,096] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M11_sorted [2026-08-19 08:08:05,099] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M25_sorted [2026-08-19 08:08:05,103] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M17_sorted [2026-08-19 08:08:05,105] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M10_sorted [2026-08-19 08:08:05,108] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M02_sorted [2026-08-19 08:08:05,112] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M39_sorted [2026-08-19 08:08:05,115] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M16_sorted [2026-08-19 08:08:05,117] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M01_sorted [2026-08-19 08:08:05,120] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M51_sorted [2026-08-19 08:08:05,123] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M50_sorted [2026-08-19 08:08:05,125] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M29_sorted [2026-08-19 08:08:05,128] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M06_sorted [2026-08-19 08:08:05,131] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M05_sorted [2026-08-19 08:08:05,134] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M55_sorted [2026-08-19 08:08:05,137] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M40_sorted [2026-08-19 08:08:05,140] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M19_sorted [2026-08-19 08:08:05,142] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M04_sorted [2026-08-19 08:08:05,145] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M54_sorted [2026-08-19 08:08:05,147] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M18_sorted [2026-08-19 08:08:05,150] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M03_sorted [2026-08-19 08:08:05,153] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M53_sorted [2026-08-19 08:08:05,155] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M09_sorted [2026-08-19 08:08:05,158] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M59_sorted [2026-08-19 08:08:05,160] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M52_sorted [2026-08-19 08:08:05,163] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M44_sorted [2026-08-19 08:08:05,166] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M08_sorted [2026-08-19 08:08:05,169] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M58_sorted [2026-08-19 08:08:05,171] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M43_sorted [2026-08-19 08:08:05,173] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M07_sorted [2026-08-19 08:08:05,175] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M57_sorted [2026-08-19 08:08:05,176] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M42_sorted [2026-08-19 08:08:05,177] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M34_sorted [2026-08-19 08:08:05,178] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M56_sorted [2026-08-19 08:08:05,179] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M48_sorted [2026-08-19 08:08:05,180] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M41_sorted [2026-08-19 08:08:05,181] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M33_sorted [2026-08-19 08:08:05,183] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M47_sorted [2026-08-19 08:08:05,184] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M32_sorted [2026-08-19 08:08:05,185] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M46_sorted [2026-08-19 08:08:05,186] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M31_sorted [2026-08-19 08:08:05,186] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M23_sorted [2026-08-19 08:08:05,187] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M45_sorted [2026-08-19 08:08:05,188] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M37_sorted [2026-08-19 08:08:05,189] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M30_sorted [2026-08-19 08:08:05,190] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M22_sorted [2026-08-19 08:08:05,191] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M36_sorted [2026-08-19 08:08:05,191] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M21_sorted [2026-08-19 08:08:05,192] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M13_sorted [2026-08-19 08:08:05,193] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M35_sorted [2026-08-19 08:08:05,194] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M27_sorted [2026-08-19 08:08:05,194] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M20_sorted [2026-08-19 08:08:05,194] multiqc.modules.featureCounts.feature_counts [INFO ] Found 53 reports [2026-08-19 08:08:05,232] multiqc [DEBUG ] No samples found: fgbio [2026-08-19 08:08:05,334] multiqc [DEBUG ] No samples found: dragen [2026-08-19 08:08:05,360] multiqc [DEBUG ] No samples found: dedup [2026-08-19 08:08:05,377] multiqc [DEBUG ] No samples found: damageprofiler [2026-08-19 08:08:05,585] multiqc [DEBUG ] No samples found: biobambam2 [2026-08-19 08:08:05,612] multiqc [DEBUG ] No samples found: jcvi [2026-08-19 08:08:05,621] multiqc [DEBUG ] No samples found: mtnucratio [2026-08-19 08:08:05,626] multiqc [DEBUG ] No samples found: picard [2026-08-19 08:08:05,648] multiqc [DEBUG ] No samples found: vep [2026-08-19 08:08:05,689] multiqc [DEBUG ] No samples found: sentieon [2026-08-19 08:08:05,713] multiqc [DEBUG ] No samples found: prokka [2026-08-19 08:08:05,736] multiqc [DEBUG ] No samples found: qc3C [2026-08-19 08:08:05,760] multiqc [DEBUG ] No samples found: nanostat [2026-08-19 08:08:05,769] multiqc [DEBUG ] No samples found: samblaster [2026-08-19 08:08:05,830] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,831] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,833] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,835] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,836] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,838] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,840] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,841] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,843] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,845] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,846] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,848] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,849] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,850] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,851] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,853] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,854] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,856] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,857] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,859] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,860] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,862] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,863] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,865] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,866] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,867] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,868] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,869] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,871] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,872] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,872] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,873] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,874] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,874] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,875] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,875] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,876] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,876] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,877] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,877] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,878] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,878] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,879] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,879] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,880] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,880] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,881] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,881] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,881] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,882] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,882] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,883] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-19 08:08:05,884] multiqc.modules.samtools.samtools [INFO ] Found 1 flagstat reports [2026-08-19 08:08:05,898] multiqc [DEBUG ] No samples found: sexdeterrmine [2026-08-19 08:08:05,908] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2026-08-19 08:08:05,916] multiqc [DEBUG ] No samples found: bamtools [2026-08-19 08:08:05,923] multiqc [DEBUG ] No samples found: jellyfish [2026-08-19 08:08:05,934] multiqc [DEBUG ] No samples found: vcftools [2026-08-19 08:08:05,950] multiqc [DEBUG ] No samples found: longranger [2026-08-19 08:08:05,970] multiqc [DEBUG ] No samples found: stacks [2026-08-19 08:08:05,984] multiqc [DEBUG ] No samples found: varscan2 [2026-08-19 08:08:06,001] multiqc [DEBUG ] No samples found: snippy [2026-08-19 08:08:06,053] multiqc [DEBUG ] No samples found: bbmap [2026-08-19 08:08:06,077] multiqc [DEBUG ] No samples found: bismark [2026-08-19 08:08:06,109] multiqc [DEBUG ] No samples found: biscuit [2026-08-19 08:08:06,134] multiqc [DEBUG ] No samples found: hicexplorer [2026-08-19 08:08:06,224] multiqc [DEBUG ] No samples found: hicup [2026-08-19 08:08:06,240] multiqc [DEBUG ] No samples found: hicpro [2026-08-19 08:08:06,249] multiqc [DEBUG ] No samples found: salmon [2026-08-19 08:08:06,267] multiqc [DEBUG ] No samples found: kallisto [2026-08-19 08:08:06,291] multiqc [DEBUG ] No samples found: slamdunk [2026-08-19 08:08:06,319] multiqc [DEBUG ] No samples found: star [2026-08-19 08:08:06,344] multiqc [DEBUG ] No samples found: hisat2 [2026-08-19 08:08:06,369] multiqc [DEBUG ] No samples found: tophat [2026-08-19 08:08:06,385] multiqc [DEBUG ] No samples found: bowtie2 [2026-08-19 08:08:06,409] multiqc [DEBUG ] No samples found: bowtie1 [2026-08-19 08:08:06,435] multiqc [DEBUG ] No samples found: snpsplit [2026-08-19 08:08:06,454] multiqc [DEBUG ] No samples found: odgi [2026-08-19 08:08:06,470] multiqc [DEBUG ] No samples found: pangolin [2026-08-19 08:08:06,480] multiqc [DEBUG ] No samples found: kat [2026-08-19 08:08:06,487] multiqc [DEBUG ] No samples found: leehom [2026-08-19 08:08:06,562] multiqc [DEBUG ] No samples found: adapterRemoval [2026-08-19 08:08:06,571] multiqc [DEBUG ] No samples found: clipandmerge [2026-08-19 08:08:06,594] multiqc [DEBUG ] No samples found: cutadapt [2026-08-19 08:08:06,604] multiqc [DEBUG ] No samples found: flexbar [2026-08-19 08:08:06,621] multiqc [DEBUG ] No samples found: kaiju [2026-08-19 08:08:06,641] multiqc [DEBUG ] No samples found: kraken [2026-08-19 08:08:06,659] multiqc [DEBUG ] No samples found: malt [2026-08-19 08:08:06,676] multiqc [DEBUG ] No samples found: trimmomatic [2026-08-19 08:08:06,691] multiqc [DEBUG ] No samples found: sickle [2026-08-19 08:08:06,719] multiqc [DEBUG ] No samples found: skewer [2026-08-19 08:08:06,729] multiqc [DEBUG ] No samples found: sortmerna [2026-08-19 08:08:06,736] multiqc [DEBUG ] No samples found: biobloomtools [2026-08-19 08:08:06,749] multiqc [DEBUG ] No samples found: fastq_screen [2026-08-19 08:08:06,767] multiqc [DEBUG ] No samples found: afterqc [2026-08-19 08:08:06,783] multiqc [DEBUG ] No samples found: fastp [2026-08-19 08:08:06,806] multiqc [DEBUG ] No samples found: fastqc [2026-08-19 08:08:06,815] multiqc [DEBUG ] No samples found: pychopper [2026-08-19 08:08:06,838] multiqc [DEBUG ] No samples found: pycoqc [2026-08-19 08:08:06,862] multiqc [DEBUG ] No samples found: minionqc [2026-08-19 08:08:06,888] multiqc [DEBUG ] No samples found: multivcfanalyzer [2026-08-19 08:08:06,911] multiqc [DEBUG ] No samples found: clusterflow [2026-08-19 08:08:06,930] multiqc [DEBUG ] No samples found: bcl2fastq [2026-08-19 08:08:06,952] multiqc [DEBUG ] No samples found: bclconvert [2026-08-19 08:08:06,977] multiqc [DEBUG ] No samples found: interop [2026-08-19 08:08:06,997] multiqc [DEBUG ] No samples found: ivar [2026-08-19 08:08:07,022] multiqc [DEBUG ] No samples found: flash [2026-08-19 08:08:07,051] multiqc [DEBUG ] No samples found: seqyclean [2026-08-19 08:08:07,061] multiqc [DEBUG ] No samples found: optitype [2026-08-19 08:08:07,085] multiqc [INFO ] Compressing plot data [2026-08-19 08:08:07,099] multiqc [INFO ] Report : multiqc_report.html [2026-08-19 08:08:07,099] multiqc [INFO ] Data : multiqc_data [2026-08-19 08:08:07,099] multiqc [DEBUG ] Moving data file from '/scratch/tmpws_1xah9/multiqc_data' to '/projectnb/wax-dk/max/G260_G264_RNAseq/G262v2_RNAseq/Scripts/99_final_summary/G262v2_RNAseq_multiqc_report/multiqc_data' [2026-08-19 08:08:07,684] multiqc [INFO ] MultiQC complete