Sample command G262-M01-GHR-fl-fl_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M01-GHR-fl-fl_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M01-GHR-fl-fl_R2_001.fastq.gz G262-M02-GHR-fl-fl_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M02-GHR-fl-fl_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M02-GHR-fl-fl_R2_001.fastq.gz G262-M03-GHR-fl-fl_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M03-GHR-fl-fl_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M03-GHR-fl-fl_R2_001.fastq.gz G262-M04-GHR-fl-fl_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M04-GHR-fl-fl_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M04-GHR-fl-fl_R2_001.fastq.gz G262-M05-GHR-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M05-GHR-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M05-GHR-fl-fl-KO_R2_001.fastq.gz G262-M06-GHR-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M06-GHR-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M06-GHR-fl-fl-KO_R2_001.fastq.gz G262-M07-GHR-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M07-GHR-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M07-GHR-fl-fl-KO_R2_001.fastq.gz G262-M08-GHR-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M08-GHR-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M08-GHR-fl-fl-KO_R2_001.fastq.gz G262-M09-GHR-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M09-GHR-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M09-GHR-fl-fl-KO_R2_001.fastq.gz G262-M10-GHR-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M10-GHR-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M10-GHR-fl-fl-KO_R2_001.fastq.gz G262-M11-ERalpha-fl-fl_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M11-ERalpha-fl-fl_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M11-ERalpha-fl-fl_R2_001.fastq.gz G262-M12-ERalpha-fl-fl_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M12-ERalpha-fl-fl_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M12-ERalpha-fl-fl_R2_001.fastq.gz G262-M13-ERalpha-fl-fl_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M13-ERalpha-fl-fl_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M13-ERalpha-fl-fl_R2_001.fastq.gz G262-M14-ERalpha-fl-fl_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M14-ERalpha-fl-fl_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M14-ERalpha-fl-fl_R2_001.fastq.gz G262-M15-ERalpha-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M15-ERalpha-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M15-ERalpha-fl-fl-KO_R2_001.fastq.gz G262-M16-ERalpha-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M16-ERalpha-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M16-ERalpha-fl-fl-KO_R2_001.fastq.gz G262-M17-ERalpha-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M17-ERalpha-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M17-ERalpha-fl-fl-KO_R2_001.fastq.gz G262-M18-ERalpha-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M18-ERalpha-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M18-ERalpha-fl-fl-KO_R2_001.fastq.gz G262-M19-ERalpha-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M19-ERalpha-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M19-ERalpha-fl-fl-KO_R2_001.fastq.gz G262-M20-ERalpha-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M20-ERalpha-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M20-ERalpha-fl-fl-KO_R2_001.fastq.gz G262-M21-GHR-fl-fl_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M21-GHR-fl-fl_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M21-GHR-fl-fl_R2_001.fastq.gz G262-M22-GHR-fl-fl_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M22-GHR-fl-fl_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M22-GHR-fl-fl_R2_001.fastq.gz G262-M23-GHR-fl-fl_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M23-GHR-fl-fl_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M23-GHR-fl-fl_R2_001.fastq.gz G262-M24-GHR-fl-fl_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M24-GHR-fl-fl_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M24-GHR-fl-fl_R2_001.fastq.gz G262-M25-GHR-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M25-GHR-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M25-GHR-fl-fl-KO_R2_001.fastq.gz G262-M26-GHR-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M26-GHR-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M26-GHR-fl-fl-KO_R2_001.fastq.gz G262-M27-GHR-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M27-GHR-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M27-GHR-fl-fl-KO_R2_001.fastq.gz G262-M28-GHR-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M28-GHR-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M28-GHR-fl-fl-KO_R2_001.fastq.gz G262-M29-GHR-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M29-GHR-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M29-GHR-fl-fl-KO_R2_001.fastq.gz G262-M30-GHR-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M30-GHR-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M30-GHR-fl-fl-KO_R2_001.fastq.gz G262-M31-ERalpha-fl-fl_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M31-ERalpha-fl-fl_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M31-ERalpha-fl-fl_R2_001.fastq.gz G262-M32-ERalpha-fl-fl_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M32-ERalpha-fl-fl_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M32-ERalpha-fl-fl_R2_001.fastq.gz G262-M33-ERalpha-fl-fl_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M33-ERalpha-fl-fl_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M33-ERalpha-fl-fl_R2_001.fastq.gz G262-M34-ERalpha-fl-fl_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M34-ERalpha-fl-fl_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M34-ERalpha-fl-fl_R2_001.fastq.gz G262-M35-ERalpha-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M35-ERalpha-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M35-ERalpha-fl-fl-KO_R2_001.fastq.gz G262-M36-ERalpha-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M36-ERalpha-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M36-ERalpha-fl-fl-KO_R2_001.fastq.gz G262-M37-ERalpha-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M37-ERalpha-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M37-ERalpha-fl-fl-KO_R2_001.fastq.gz G262-M38-ERalpha-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M38-ERalpha-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M38-ERalpha-fl-fl-KO_R2_001.fastq.gz G262-M39-ERalpha-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M39-ERalpha-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M39-ERalpha-fl-fl-KO_R2_001.fastq.gz G262-M40-ERalpha-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M40-ERalpha-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M40-ERalpha-fl-fl-KO_R2_001.fastq.gz G262-M41-GHR-ERa-fl-fl_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M41-GHR-ERa-fl-fl_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M41-GHR-ERa-fl-fl_R2_001.fastq.gz G262-M42-GHR-ERa-fl-fl_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M42-GHR-ERa-fl-fl_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M42-GHR-ERa-fl-fl_R2_001.fastq.gz G262-M43-GHR-ERa-fl-fl_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M43-GHR-ERa-fl-fl_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M43-GHR-ERa-fl-fl_R2_001.fastq.gz G262-M44-GHR-ERa-fl-fl_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M44-GHR-ERa-fl-fl_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M44-GHR-ERa-fl-fl_R2_001.fastq.gz G262-M45-GHR-ERa-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M45-GHR-ERa-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M45-GHR-ERa-fl-fl-KO_R2_001.fastq.gz G262-M46-GHR-ERa-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M46-GHR-ERa-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M46-GHR-ERa-fl-fl-KO_R2_001.fastq.gz G262-M47-GHR-ERa-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M47-GHR-ERa-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M47-GHR-ERa-fl-fl-KO_R2_001.fastq.gz G262-M48-GHR-ERa-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M48-GHR-ERa-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M48-GHR-ERa-fl-fl-KO_R2_001.fastq.gz G262-M49-GHR-ERa-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M49-GHR-ERa-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M49-GHR-ERa-fl-fl-KO_R2_001.fastq.gz G262-M50-GHR-ERa-fl-fl-KO_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M50-GHR-ERa-fl-fl-KO_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M50-GHR-ERa-fl-fl-KO_R2_001.fastq.gz G262-M51-GHR-ERa-fl-fl_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M51-GHR-ERa-fl-fl_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M51-GHR-ERa-fl-fl_R2_001.fastq.gz G262-M52-GHR-ERa-fl-fl_R1_001 fastp -i /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M52-GHR-ERa-fl-fl_R1_001.fastq.gz -I /net/waxman-server/mnt/data/volume2/Waxman_Illumina_HiSeq_Raw_Data_02/G260_G265/G262-M52-GHR-ERa-fl-fl_R2_001.fastq.gz G262-M53-GHR-ERa-fl-fl_R1_001 fastp -i 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