[2026-08-14 11:48:23,044] multiqc [DEBUG ] This is MultiQC v1.11 [2026-08-14 11:48:23,044] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2026-08-14 11:48:23,044] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2026-08-14 11:48:23,044] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2026-08-14 11:48:23,046] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/G260_G264_RNAseq/G262_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2026-08-14 11:48:23,046] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2026-08-14 11:48:23,047] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2026-08-14 11:48:23,047] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G260_G264_RNAseq/G262_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G260_G264_RNAseq/G262_RNAseq/SAMPLES /projectnb2/wax-dk/max/G260_G264_RNAseq/G262_RNAseq/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G260_G264_RNAseq/G262_RNAseq/Scripts/06_CollectMetrics/ [2026-08-14 11:48:23,570] multiqc [WARNING] MultiQC Version v1.35 now available! [2026-08-14 11:48:23,570] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G260_G264_RNAseq/G262_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G260_G264_RNAseq/G262_RNAseq/SAMPLES /projectnb2/wax-dk/max/G260_G264_RNAseq/G262_RNAseq/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G260_G264_RNAseq/G262_RNAseq/Scripts/06_CollectMetrics/ [2026-08-14 11:48:23,570] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G260_G264_RNAseq/G262_RNAseq/Scripts/99_final_summary/G262_RNAseq_multiqc_report [2026-08-14 11:48:23,570] multiqc [DEBUG ] Template : default [2026-08-14 11:48:23,570] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2026-08-14 11:48:23,571] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2026-08-14 11:48:23,572] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmp68dad2lr [2026-08-14 11:48:24,028] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G260_G264_RNAseq/G262_RNAseq/SAMPLES [2026-08-14 11:48:24,028] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G260_G264_RNAseq/G262_RNAseq/Scripts/03_FASTQC [2026-08-14 11:48:24,028] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G260_G264_RNAseq/G262_RNAseq/Scripts/06_CollectMetrics [2026-08-14 11:48:24,730] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M12-ERalpha-fl-fl_R1_001.fastq.gz [2026-08-14 11:48:24,730] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M12-ERalpha-fl-fl_R2_001.fastq.gz [2026-08-14 11:48:24,897] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M12_SJ.out.tab [2026-08-14 11:48:24,901] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M12_SJ.out.tab [2026-08-14 11:48:24,902] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M12_SJ.out.tab [2026-08-14 11:48:24,902] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M12_SJ.out.tab [2026-08-14 11:48:24,908] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M12_SJ.out.tab [2026-08-14 11:48:24,908] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M12_SJ.out.tab [2026-08-14 11:48:24,909] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M12_SJ.out.tab [2026-08-14 11:48:24,909] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M12_SJ.out.tab [2026-08-14 11:48:24,909] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M12_SJ.out.tab [2026-08-14 11:48:24,909] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M12_SJ.out.tab [2026-08-14 11:48:24,909] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M12_SJ.out.tab [2026-08-14 11:48:24,909] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M12_SJ.out.tab [2026-08-14 11:48:24,909] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M12_SJ.out.tab [2026-08-14 11:48:24,909] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M12_SJ.out.tab [2026-08-14 11:48:27,207] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M12_marked_dup_metrics.txt [2026-08-14 11:48:27,212] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M12_marked_dup_metrics.txt [2026-08-14 11:48:27,212] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M12_marked_dup_metrics.txt [2026-08-14 11:48:27,213] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M12_marked_dup_metrics.txt [2026-08-14 11:48:27,218] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M12_marked_dup_metrics.txt [2026-08-14 11:48:27,260] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M12_metrics [2026-08-14 11:48:27,263] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M12_metrics [2026-08-14 11:48:27,263] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M12_metrics [2026-08-14 11:48:27,263] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M12_metrics [2026-08-14 11:48:27,271] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M12_metrics [2026-08-14 11:48:27,322] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M12_hist.pdf [2026-08-14 11:48:27,375] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:27,380] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:27,380] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:27,380] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:27,387] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:27,387] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:27,387] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:27,387] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:27,387] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:27,388] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:27,388] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:27,388] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:27,416] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:28,397] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:28,400] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:28,401] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:28,401] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:28,406] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:28,406] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:28,406] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:28,406] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:28,406] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:28,406] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:28,406] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:28,406] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:28,425] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M12_featureCounts.out [2026-08-14 11:48:29,350] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M12_metrics [2026-08-14 11:48:29,356] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M12_metrics [2026-08-14 11:48:29,364] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M12_metrics [2026-08-14 11:48:29,408] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M26-GHR-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:48:29,408] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M26-GHR-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:48:29,513] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M26_SJ.out.tab [2026-08-14 11:48:29,516] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M26_SJ.out.tab [2026-08-14 11:48:29,516] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M26_SJ.out.tab [2026-08-14 11:48:29,516] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M26_SJ.out.tab [2026-08-14 11:48:29,522] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M26_SJ.out.tab [2026-08-14 11:48:29,522] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M26_SJ.out.tab [2026-08-14 11:48:29,522] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M26_SJ.out.tab [2026-08-14 11:48:29,522] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M26_SJ.out.tab [2026-08-14 11:48:29,522] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M26_SJ.out.tab [2026-08-14 11:48:29,522] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M26_SJ.out.tab [2026-08-14 11:48:29,522] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M26_SJ.out.tab [2026-08-14 11:48:29,523] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M26_SJ.out.tab [2026-08-14 11:48:29,523] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M26_SJ.out.tab [2026-08-14 11:48:29,523] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M26_SJ.out.tab [2026-08-14 11:48:31,699] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M26_marked_dup_metrics.txt [2026-08-14 11:48:31,704] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M26_marked_dup_metrics.txt [2026-08-14 11:48:31,705] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M26_marked_dup_metrics.txt [2026-08-14 11:48:31,705] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M26_marked_dup_metrics.txt [2026-08-14 11:48:31,713] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M26_marked_dup_metrics.txt [2026-08-14 11:48:31,737] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M26_hist.pdf [2026-08-14 11:48:31,763] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M26_metrics [2026-08-14 11:48:31,767] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M26_metrics [2026-08-14 11:48:31,767] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M26_metrics [2026-08-14 11:48:31,767] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M26_metrics [2026-08-14 11:48:31,775] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M26_metrics [2026-08-14 11:48:31,890] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:31,895] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:31,896] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:31,896] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:31,904] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:31,904] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:31,904] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:31,904] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:31,904] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:31,904] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:31,904] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:31,904] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:31,925] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:32,895] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:32,900] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:32,900] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:32,901] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:32,909] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:32,909] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:32,909] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:32,909] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:32,909] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:32,909] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:32,909] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:32,909] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:32,933] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M26_featureCounts.out [2026-08-14 11:48:33,840] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M26_metrics [2026-08-14 11:48:33,843] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M26_metrics [2026-08-14 11:48:33,847] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M26_metrics [2026-08-14 11:48:33,896] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M11-ERalpha-fl-fl_R1_001.fastq.gz [2026-08-14 11:48:33,897] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M11-ERalpha-fl-fl_R2_001.fastq.gz [2026-08-14 11:48:33,959] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M11_SJ.out.tab [2026-08-14 11:48:33,964] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M11_SJ.out.tab [2026-08-14 11:48:33,965] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M11_SJ.out.tab [2026-08-14 11:48:33,965] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M11_SJ.out.tab [2026-08-14 11:48:33,973] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M11_SJ.out.tab [2026-08-14 11:48:33,973] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M11_SJ.out.tab [2026-08-14 11:48:33,973] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M11_SJ.out.tab [2026-08-14 11:48:33,973] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M11_SJ.out.tab [2026-08-14 11:48:33,973] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M11_SJ.out.tab [2026-08-14 11:48:33,974] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M11_SJ.out.tab [2026-08-14 11:48:33,974] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M11_SJ.out.tab [2026-08-14 11:48:33,974] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M11_SJ.out.tab [2026-08-14 11:48:33,974] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M11_SJ.out.tab [2026-08-14 11:48:33,974] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M11_SJ.out.tab [2026-08-14 11:48:36,244] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M11_marked_dup_metrics.txt [2026-08-14 11:48:36,248] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M11_marked_dup_metrics.txt [2026-08-14 11:48:36,248] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M11_marked_dup_metrics.txt [2026-08-14 11:48:36,248] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M11_marked_dup_metrics.txt [2026-08-14 11:48:36,255] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M11_marked_dup_metrics.txt [2026-08-14 11:48:36,298] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M11_metrics [2026-08-14 11:48:36,302] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M11_metrics [2026-08-14 11:48:36,303] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M11_metrics [2026-08-14 11:48:36,303] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M11_metrics [2026-08-14 11:48:36,312] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M11_metrics [2026-08-14 11:48:36,377] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M11_hist.pdf [2026-08-14 11:48:36,444] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:36,447] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:36,447] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:36,447] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:36,451] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:36,451] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:36,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:36,452] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:36,452] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:36,452] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:36,452] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:36,452] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:36,480] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:37,464] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:37,469] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:37,469] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:37,469] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:37,474] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:37,474] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:37,474] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:37,474] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:37,475] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:37,475] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:37,475] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:37,475] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:37,494] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M11_featureCounts.out [2026-08-14 11:48:38,411] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M11_metrics [2026-08-14 11:48:38,414] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M11_metrics [2026-08-14 11:48:38,420] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M11_metrics [2026-08-14 11:48:38,476] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M25-GHR-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:48:38,476] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M25-GHR-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:48:38,618] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M25_SJ.out.tab [2026-08-14 11:48:38,622] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M25_SJ.out.tab [2026-08-14 11:48:38,623] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M25_SJ.out.tab [2026-08-14 11:48:38,623] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M25_SJ.out.tab [2026-08-14 11:48:38,631] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M25_SJ.out.tab [2026-08-14 11:48:38,631] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M25_SJ.out.tab [2026-08-14 11:48:38,631] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M25_SJ.out.tab [2026-08-14 11:48:38,631] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M25_SJ.out.tab [2026-08-14 11:48:38,631] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M25_SJ.out.tab [2026-08-14 11:48:38,631] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M25_SJ.out.tab [2026-08-14 11:48:38,631] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M25_SJ.out.tab [2026-08-14 11:48:38,631] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M25_SJ.out.tab [2026-08-14 11:48:38,632] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M25_SJ.out.tab [2026-08-14 11:48:38,632] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M25_SJ.out.tab [2026-08-14 11:48:40,722] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M25_marked_dup_metrics.txt [2026-08-14 11:48:40,726] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M25_marked_dup_metrics.txt [2026-08-14 11:48:40,727] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M25_marked_dup_metrics.txt [2026-08-14 11:48:40,727] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M25_marked_dup_metrics.txt [2026-08-14 11:48:40,734] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M25_marked_dup_metrics.txt [2026-08-14 11:48:40,771] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M25_metrics [2026-08-14 11:48:40,774] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M25_metrics [2026-08-14 11:48:40,774] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M25_metrics [2026-08-14 11:48:40,774] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M25_metrics [2026-08-14 11:48:40,779] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M25_metrics [2026-08-14 11:48:40,845] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M25_hist.pdf [2026-08-14 11:48:40,895] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:40,899] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:40,899] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:40,899] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:40,904] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:40,904] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:40,904] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:40,905] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:40,905] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:40,905] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:40,905] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:40,905] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:40,924] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:41,874] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:41,878] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:41,879] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:41,879] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:41,884] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:41,884] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:41,884] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:41,884] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:41,884] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:41,884] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:41,884] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:41,885] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:41,903] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M25_featureCounts.out [2026-08-14 11:48:42,805] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M25_metrics [2026-08-14 11:48:42,808] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M25_metrics [2026-08-14 11:48:42,814] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M25_metrics [2026-08-14 11:48:42,880] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M17-ERalpha-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:48:42,880] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M17-ERalpha-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:48:42,952] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M17_SJ.out.tab [2026-08-14 11:48:42,956] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M17_SJ.out.tab [2026-08-14 11:48:42,956] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M17_SJ.out.tab [2026-08-14 11:48:42,956] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M17_SJ.out.tab [2026-08-14 11:48:42,962] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M17_SJ.out.tab [2026-08-14 11:48:42,962] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M17_SJ.out.tab [2026-08-14 11:48:42,962] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M17_SJ.out.tab [2026-08-14 11:48:42,962] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M17_SJ.out.tab [2026-08-14 11:48:42,962] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M17_SJ.out.tab [2026-08-14 11:48:42,962] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M17_SJ.out.tab [2026-08-14 11:48:42,962] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M17_SJ.out.tab [2026-08-14 11:48:42,962] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M17_SJ.out.tab [2026-08-14 11:48:42,962] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M17_SJ.out.tab [2026-08-14 11:48:42,962] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M17_SJ.out.tab [2026-08-14 11:48:45,119] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M17_marked_dup_metrics.txt [2026-08-14 11:48:45,122] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M17_marked_dup_metrics.txt [2026-08-14 11:48:45,122] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M17_marked_dup_metrics.txt [2026-08-14 11:48:45,122] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M17_marked_dup_metrics.txt [2026-08-14 11:48:45,127] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M17_marked_dup_metrics.txt [2026-08-14 11:48:45,150] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M17_metrics [2026-08-14 11:48:45,152] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M17_metrics [2026-08-14 11:48:45,153] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M17_metrics [2026-08-14 11:48:45,153] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M17_metrics [2026-08-14 11:48:45,157] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M17_metrics [2026-08-14 11:48:45,201] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M17_hist.pdf [2026-08-14 11:48:45,247] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:45,251] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:45,252] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:45,252] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:45,257] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:45,257] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:45,257] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:45,257] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:45,257] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:45,257] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:45,257] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:45,257] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:45,278] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:46,247] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:46,251] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:46,251] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:46,251] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:46,257] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:46,257] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:46,257] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:46,257] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:46,257] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:46,257] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:46,257] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:46,257] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:46,277] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M17_featureCounts.out [2026-08-14 11:48:47,170] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M17_metrics [2026-08-14 11:48:47,175] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M17_metrics [2026-08-14 11:48:47,182] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M17_metrics [2026-08-14 11:48:47,234] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M10-GHR-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:48:47,235] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M10-GHR-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:48:47,314] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M10_SJ.out.tab [2026-08-14 11:48:47,316] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M10_SJ.out.tab [2026-08-14 11:48:47,317] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M10_SJ.out.tab [2026-08-14 11:48:47,317] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M10_SJ.out.tab [2026-08-14 11:48:47,322] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M10_SJ.out.tab [2026-08-14 11:48:47,322] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M10_SJ.out.tab [2026-08-14 11:48:47,322] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M10_SJ.out.tab [2026-08-14 11:48:47,322] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M10_SJ.out.tab [2026-08-14 11:48:47,322] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M10_SJ.out.tab [2026-08-14 11:48:47,322] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M10_SJ.out.tab [2026-08-14 11:48:47,322] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M10_SJ.out.tab [2026-08-14 11:48:47,322] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M10_SJ.out.tab [2026-08-14 11:48:47,322] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M10_SJ.out.tab [2026-08-14 11:48:47,322] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M10_SJ.out.tab [2026-08-14 11:48:49,356] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M10_marked_dup_metrics.txt [2026-08-14 11:48:49,359] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M10_marked_dup_metrics.txt [2026-08-14 11:48:49,360] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M10_marked_dup_metrics.txt [2026-08-14 11:48:49,360] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M10_marked_dup_metrics.txt [2026-08-14 11:48:49,366] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M10_marked_dup_metrics.txt [2026-08-14 11:48:49,388] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M10_hist.pdf [2026-08-14 11:48:49,400] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M10_metrics [2026-08-14 11:48:49,402] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M10_metrics [2026-08-14 11:48:49,403] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M10_metrics [2026-08-14 11:48:49,403] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M10_metrics [2026-08-14 11:48:49,408] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M10_metrics [2026-08-14 11:48:49,509] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:49,511] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:49,512] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:49,512] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:49,517] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:49,517] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:49,517] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:49,517] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:49,517] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:49,517] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:49,517] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:49,517] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:49,537] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:50,479] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:50,484] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:50,484] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:50,484] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:50,491] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:50,491] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:50,491] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:50,491] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:50,491] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:50,491] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:50,491] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:50,491] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:50,510] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M10_featureCounts.out [2026-08-14 11:48:51,424] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M10_metrics [2026-08-14 11:48:51,427] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M10_metrics [2026-08-14 11:48:51,431] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M10_metrics [2026-08-14 11:48:51,498] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M02-GHR-fl-fl_R1_001.fastq.gz [2026-08-14 11:48:51,499] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M02-GHR-fl-fl_R2_001.fastq.gz [2026-08-14 11:48:51,667] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M02_SJ.out.tab [2026-08-14 11:48:51,671] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M02_SJ.out.tab [2026-08-14 11:48:51,672] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M02_SJ.out.tab [2026-08-14 11:48:51,672] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M02_SJ.out.tab [2026-08-14 11:48:51,677] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M02_SJ.out.tab [2026-08-14 11:48:51,677] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M02_SJ.out.tab [2026-08-14 11:48:51,678] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M02_SJ.out.tab [2026-08-14 11:48:51,678] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M02_SJ.out.tab [2026-08-14 11:48:51,678] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M02_SJ.out.tab [2026-08-14 11:48:51,678] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M02_SJ.out.tab [2026-08-14 11:48:51,678] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M02_SJ.out.tab [2026-08-14 11:48:51,678] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M02_SJ.out.tab [2026-08-14 11:48:51,678] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M02_SJ.out.tab [2026-08-14 11:48:51,678] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M02_SJ.out.tab [2026-08-14 11:48:53,730] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M02_marked_dup_metrics.txt [2026-08-14 11:48:53,734] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M02_marked_dup_metrics.txt [2026-08-14 11:48:53,734] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M02_marked_dup_metrics.txt [2026-08-14 11:48:53,734] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M02_marked_dup_metrics.txt [2026-08-14 11:48:53,741] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M02_marked_dup_metrics.txt [2026-08-14 11:48:53,776] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M02_metrics [2026-08-14 11:48:53,780] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M02_metrics [2026-08-14 11:48:53,780] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M02_metrics [2026-08-14 11:48:53,780] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M02_metrics [2026-08-14 11:48:53,787] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M02_metrics [2026-08-14 11:48:53,845] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M02_hist.pdf [2026-08-14 11:48:53,901] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:53,905] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:53,906] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:53,906] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:53,913] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:53,913] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:53,913] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:53,913] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:53,913] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:53,913] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:53,913] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:53,913] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:53,935] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:54,888] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:54,893] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:54,893] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:54,893] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:54,900] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:54,900] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:54,900] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:54,900] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:54,900] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:54,900] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:54,900] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:54,900] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:54,921] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M02_featureCounts.out [2026-08-14 11:48:55,842] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M02_metrics [2026-08-14 11:48:55,848] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M02_metrics [2026-08-14 11:48:55,855] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M02_metrics [2026-08-14 11:48:55,925] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M39-ERalpha-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:48:55,925] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M39-ERalpha-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:48:56,103] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M39_SJ.out.tab [2026-08-14 11:48:56,108] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M39_SJ.out.tab [2026-08-14 11:48:56,108] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M39_SJ.out.tab [2026-08-14 11:48:56,108] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M39_SJ.out.tab [2026-08-14 11:48:56,115] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M39_SJ.out.tab [2026-08-14 11:48:56,115] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M39_SJ.out.tab [2026-08-14 11:48:56,115] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M39_SJ.out.tab [2026-08-14 11:48:56,115] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M39_SJ.out.tab [2026-08-14 11:48:56,115] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M39_SJ.out.tab [2026-08-14 11:48:56,115] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M39_SJ.out.tab [2026-08-14 11:48:56,116] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M39_SJ.out.tab [2026-08-14 11:48:56,116] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M39_SJ.out.tab [2026-08-14 11:48:56,116] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M39_SJ.out.tab [2026-08-14 11:48:56,116] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M39_SJ.out.tab [2026-08-14 11:48:58,432] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M39_marked_dup_metrics.txt [2026-08-14 11:48:58,436] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M39_marked_dup_metrics.txt [2026-08-14 11:48:58,437] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M39_marked_dup_metrics.txt [2026-08-14 11:48:58,437] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M39_marked_dup_metrics.txt [2026-08-14 11:48:58,444] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M39_marked_dup_metrics.txt [2026-08-14 11:48:58,466] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M39_hist.pdf [2026-08-14 11:48:58,486] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M39_metrics [2026-08-14 11:48:58,491] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M39_metrics [2026-08-14 11:48:58,491] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M39_metrics [2026-08-14 11:48:58,491] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M39_metrics [2026-08-14 11:48:58,497] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M39_metrics [2026-08-14 11:48:58,605] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:58,609] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:58,610] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:58,610] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:58,616] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:58,616] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:58,616] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:58,616] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:58,616] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:58,616] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:58,616] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:58,616] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:58,636] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:59,626] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:59,631] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:59,631] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:59,631] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:59,638] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:59,638] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:59,638] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:59,638] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:59,638] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:59,639] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:59,639] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:59,639] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:48:59,659] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M39_featureCounts.out [2026-08-14 11:49:00,605] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M39_metrics [2026-08-14 11:49:00,608] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M39_metrics [2026-08-14 11:49:00,612] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M39_metrics [2026-08-14 11:49:00,670] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M24-GHR-fl-fl_R2_001.fastq.gz [2026-08-14 11:49:00,671] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M24-GHR-fl-fl_R1_001.fastq.gz [2026-08-14 11:49:00,775] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M24_SJ.out.tab [2026-08-14 11:49:00,780] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M24_SJ.out.tab [2026-08-14 11:49:00,780] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M24_SJ.out.tab [2026-08-14 11:49:00,780] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M24_SJ.out.tab [2026-08-14 11:49:00,788] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M24_SJ.out.tab [2026-08-14 11:49:00,789] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M24_SJ.out.tab [2026-08-14 11:49:00,789] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M24_SJ.out.tab [2026-08-14 11:49:00,789] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M24_SJ.out.tab [2026-08-14 11:49:00,789] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M24_SJ.out.tab [2026-08-14 11:49:00,789] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M24_SJ.out.tab [2026-08-14 11:49:00,789] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M24_SJ.out.tab [2026-08-14 11:49:00,789] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M24_SJ.out.tab [2026-08-14 11:49:00,789] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M24_SJ.out.tab [2026-08-14 11:49:00,789] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M24_SJ.out.tab [2026-08-14 11:49:03,613] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M24_marked_dup_metrics.txt [2026-08-14 11:49:03,617] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M24_marked_dup_metrics.txt [2026-08-14 11:49:03,618] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M24_marked_dup_metrics.txt [2026-08-14 11:49:03,618] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M24_marked_dup_metrics.txt [2026-08-14 11:49:03,627] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M24_marked_dup_metrics.txt [2026-08-14 11:49:03,681] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M24_metrics [2026-08-14 11:49:03,685] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M24_metrics [2026-08-14 11:49:03,685] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M24_metrics [2026-08-14 11:49:03,685] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M24_metrics [2026-08-14 11:49:03,691] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M24_metrics [2026-08-14 11:49:03,732] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M24_hist.pdf [2026-08-14 11:49:03,766] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:03,770] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:03,770] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:03,770] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:03,777] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:03,778] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:03,778] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:03,778] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:03,778] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:03,778] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:03,778] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:03,778] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:03,804] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:04,787] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:04,790] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:04,791] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:04,791] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:04,797] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:04,797] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:04,797] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:04,797] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:04,797] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:04,797] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:04,797] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:04,797] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:04,818] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M24_featureCounts.out [2026-08-14 11:49:05,763] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M24_metrics [2026-08-14 11:49:05,768] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M24_metrics [2026-08-14 11:49:05,775] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M24_metrics [2026-08-14 11:49:05,842] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M16-ERalpha-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:49:05,843] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M16-ERalpha-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:49:05,938] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M16_SJ.out.tab [2026-08-14 11:49:05,943] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M16_SJ.out.tab [2026-08-14 11:49:05,943] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M16_SJ.out.tab [2026-08-14 11:49:05,944] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M16_SJ.out.tab [2026-08-14 11:49:05,951] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M16_SJ.out.tab [2026-08-14 11:49:05,951] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M16_SJ.out.tab [2026-08-14 11:49:05,951] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M16_SJ.out.tab [2026-08-14 11:49:05,951] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M16_SJ.out.tab [2026-08-14 11:49:05,951] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M16_SJ.out.tab [2026-08-14 11:49:05,952] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M16_SJ.out.tab [2026-08-14 11:49:05,952] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M16_SJ.out.tab [2026-08-14 11:49:05,952] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M16_SJ.out.tab [2026-08-14 11:49:05,952] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M16_SJ.out.tab [2026-08-14 11:49:05,952] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M16_SJ.out.tab [2026-08-14 11:49:08,208] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M16_marked_dup_metrics.txt [2026-08-14 11:49:08,213] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M16_marked_dup_metrics.txt [2026-08-14 11:49:08,213] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M16_marked_dup_metrics.txt [2026-08-14 11:49:08,213] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M16_marked_dup_metrics.txt [2026-08-14 11:49:08,219] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M16_marked_dup_metrics.txt [2026-08-14 11:49:08,235] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M16_hist.pdf [2026-08-14 11:49:08,260] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M16_metrics [2026-08-14 11:49:08,264] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M16_metrics [2026-08-14 11:49:08,264] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M16_metrics [2026-08-14 11:49:08,264] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M16_metrics [2026-08-14 11:49:08,271] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M16_metrics [2026-08-14 11:49:08,377] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:08,381] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:08,381] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:08,381] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:08,388] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:08,388] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:08,388] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:08,388] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:08,388] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:08,388] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:08,389] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:08,389] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:08,415] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:09,386] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:09,390] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:09,391] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:09,391] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:09,399] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:09,399] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:09,399] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:09,399] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:09,399] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:09,399] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:09,399] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:09,399] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:09,422] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M16_featureCounts.out [2026-08-14 11:49:10,353] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M16_metrics [2026-08-14 11:49:10,355] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M16_metrics [2026-08-14 11:49:10,360] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M16_metrics [2026-08-14 11:49:10,414] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M01-GHR-fl-fl_R1_001.fastq.gz [2026-08-14 11:49:10,417] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M01-GHR-fl-fl_R2_001.fastq.gz [2026-08-14 11:49:10,600] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M01_SJ.out.tab [2026-08-14 11:49:10,604] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M01_SJ.out.tab [2026-08-14 11:49:10,605] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M01_SJ.out.tab [2026-08-14 11:49:10,605] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M01_SJ.out.tab [2026-08-14 11:49:10,611] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M01_SJ.out.tab [2026-08-14 11:49:10,612] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M01_SJ.out.tab [2026-08-14 11:49:10,612] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M01_SJ.out.tab [2026-08-14 11:49:10,612] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M01_SJ.out.tab [2026-08-14 11:49:10,612] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M01_SJ.out.tab [2026-08-14 11:49:10,612] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M01_SJ.out.tab [2026-08-14 11:49:10,612] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M01_SJ.out.tab [2026-08-14 11:49:10,612] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M01_SJ.out.tab [2026-08-14 11:49:10,612] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M01_SJ.out.tab [2026-08-14 11:49:10,612] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M01_SJ.out.tab [2026-08-14 11:49:12,544] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M01_marked_dup_metrics.txt [2026-08-14 11:49:12,546] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M01_marked_dup_metrics.txt [2026-08-14 11:49:12,547] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M01_marked_dup_metrics.txt [2026-08-14 11:49:12,547] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M01_marked_dup_metrics.txt [2026-08-14 11:49:12,552] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M01_marked_dup_metrics.txt [2026-08-14 11:49:12,594] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M01_metrics [2026-08-14 11:49:12,596] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M01_metrics [2026-08-14 11:49:12,597] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M01_metrics [2026-08-14 11:49:12,597] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M01_metrics [2026-08-14 11:49:12,602] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M01_metrics [2026-08-14 11:49:12,664] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M01_hist.pdf [2026-08-14 11:49:12,724] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:12,729] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:12,729] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:12,729] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:12,735] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:12,735] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:12,735] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:12,736] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:12,736] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:12,736] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:12,736] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:12,736] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:12,763] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:13,720] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:13,724] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:13,725] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:13,725] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:13,730] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:13,730] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:13,730] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:13,730] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:13,730] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:13,730] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:13,730] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:13,730] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:13,750] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M01_featureCounts.out [2026-08-14 11:49:14,675] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M01_metrics [2026-08-14 11:49:14,678] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M01_metrics [2026-08-14 11:49:14,682] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M01_metrics [2026-08-14 11:49:14,737] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M51-GHR-ERa-fl-fl_R2_001.fastq.gz [2026-08-14 11:49:14,740] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M51-GHR-ERa-fl-fl_R1_001.fastq.gz [2026-08-14 11:49:14,823] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M51_SJ.out.tab [2026-08-14 11:49:14,828] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M51_SJ.out.tab [2026-08-14 11:49:14,828] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M51_SJ.out.tab [2026-08-14 11:49:14,828] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M51_SJ.out.tab [2026-08-14 11:49:14,835] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M51_SJ.out.tab [2026-08-14 11:49:14,836] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M51_SJ.out.tab [2026-08-14 11:49:14,836] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M51_SJ.out.tab [2026-08-14 11:49:14,836] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M51_SJ.out.tab [2026-08-14 11:49:14,836] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M51_SJ.out.tab [2026-08-14 11:49:14,836] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M51_SJ.out.tab [2026-08-14 11:49:14,836] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M51_SJ.out.tab [2026-08-14 11:49:14,836] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M51_SJ.out.tab [2026-08-14 11:49:14,836] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M51_SJ.out.tab [2026-08-14 11:49:14,836] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M51_SJ.out.tab [2026-08-14 11:49:17,057] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M51_marked_dup_metrics.txt [2026-08-14 11:49:17,062] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M51_marked_dup_metrics.txt [2026-08-14 11:49:17,062] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M51_marked_dup_metrics.txt [2026-08-14 11:49:17,062] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M51_marked_dup_metrics.txt [2026-08-14 11:49:17,071] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M51_marked_dup_metrics.txt [2026-08-14 11:49:17,120] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M51_metrics [2026-08-14 11:49:17,123] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M51_metrics [2026-08-14 11:49:17,124] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M51_metrics [2026-08-14 11:49:17,124] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M51_metrics [2026-08-14 11:49:17,131] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M51_metrics [2026-08-14 11:49:17,207] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M51_hist.pdf [2026-08-14 11:49:17,241] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:17,244] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:17,245] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:17,245] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:17,250] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:17,250] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:17,251] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:17,251] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:17,251] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:17,251] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:17,251] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:17,251] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:17,270] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:18,253] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:18,258] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:18,258] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:18,258] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:18,265] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:18,265] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:18,266] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:18,266] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:18,266] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:18,266] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:18,266] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:18,266] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:18,287] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M51_featureCounts.out [2026-08-14 11:49:19,229] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M51_metrics [2026-08-14 11:49:19,232] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M51_metrics [2026-08-14 11:49:19,239] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M51_metrics [2026-08-14 11:49:19,298] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M15-ERalpha-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:49:19,300] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M15-ERalpha-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:49:19,432] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M15_SJ.out.tab [2026-08-14 11:49:19,436] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M15_SJ.out.tab [2026-08-14 11:49:19,437] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M15_SJ.out.tab [2026-08-14 11:49:19,437] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M15_SJ.out.tab [2026-08-14 11:49:19,445] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M15_SJ.out.tab [2026-08-14 11:49:19,445] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M15_SJ.out.tab [2026-08-14 11:49:19,445] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M15_SJ.out.tab [2026-08-14 11:49:19,445] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M15_SJ.out.tab [2026-08-14 11:49:19,445] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M15_SJ.out.tab [2026-08-14 11:49:19,445] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M15_SJ.out.tab [2026-08-14 11:49:19,445] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M15_SJ.out.tab [2026-08-14 11:49:19,445] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M15_SJ.out.tab [2026-08-14 11:49:19,445] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M15_SJ.out.tab [2026-08-14 11:49:19,445] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M15_SJ.out.tab [2026-08-14 11:49:21,522] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M15_marked_dup_metrics.txt [2026-08-14 11:49:21,526] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M15_marked_dup_metrics.txt [2026-08-14 11:49:21,527] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M15_marked_dup_metrics.txt [2026-08-14 11:49:21,527] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M15_marked_dup_metrics.txt [2026-08-14 11:49:21,535] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M15_marked_dup_metrics.txt [2026-08-14 11:49:21,556] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M15_hist.pdf [2026-08-14 11:49:21,572] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M15_metrics [2026-08-14 11:49:21,576] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M15_metrics [2026-08-14 11:49:21,576] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M15_metrics [2026-08-14 11:49:21,576] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M15_metrics [2026-08-14 11:49:21,583] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M15_metrics [2026-08-14 11:49:21,647] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:21,650] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:21,651] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:21,651] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:21,657] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:21,657] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:21,658] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:21,658] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:21,658] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:21,658] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:21,658] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:21,658] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:21,679] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:22,658] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:22,662] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:22,662] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:22,662] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:22,669] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:22,669] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:22,669] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:22,669] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:22,669] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:22,669] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:22,669] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:22,669] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:22,688] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M15_featureCounts.out [2026-08-14 11:49:23,628] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M15_metrics [2026-08-14 11:49:23,631] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M15_metrics [2026-08-14 11:49:23,635] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M15_metrics [2026-08-14 11:49:23,709] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M50-GHR-ERa-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:49:23,712] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M50-GHR-ERa-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:49:23,873] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M50_SJ.out.tab [2026-08-14 11:49:23,877] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M50_SJ.out.tab [2026-08-14 11:49:23,878] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M50_SJ.out.tab [2026-08-14 11:49:23,878] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M50_SJ.out.tab [2026-08-14 11:49:23,886] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M50_SJ.out.tab [2026-08-14 11:49:23,886] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M50_SJ.out.tab [2026-08-14 11:49:23,886] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M50_SJ.out.tab [2026-08-14 11:49:23,886] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M50_SJ.out.tab [2026-08-14 11:49:23,886] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M50_SJ.out.tab [2026-08-14 11:49:23,886] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M50_SJ.out.tab [2026-08-14 11:49:23,886] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M50_SJ.out.tab [2026-08-14 11:49:23,886] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M50_SJ.out.tab [2026-08-14 11:49:23,887] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M50_SJ.out.tab [2026-08-14 11:49:23,887] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M50_SJ.out.tab [2026-08-14 11:49:25,788] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M50_marked_dup_metrics.txt [2026-08-14 11:49:25,793] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M50_marked_dup_metrics.txt [2026-08-14 11:49:25,793] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M50_marked_dup_metrics.txt [2026-08-14 11:49:25,794] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M50_marked_dup_metrics.txt [2026-08-14 11:49:25,802] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M50_marked_dup_metrics.txt [2026-08-14 11:49:25,822] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M50_hist.pdf [2026-08-14 11:49:25,833] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M50_metrics [2026-08-14 11:49:25,835] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M50_metrics [2026-08-14 11:49:25,836] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M50_metrics [2026-08-14 11:49:25,836] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M50_metrics [2026-08-14 11:49:25,843] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M50_metrics [2026-08-14 11:49:25,944] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:25,947] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:25,947] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:25,947] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:25,953] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:25,953] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:25,953] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:25,953] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:25,954] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:25,954] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:25,954] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:25,954] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:25,980] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:26,946] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:26,951] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:26,952] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:26,952] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:26,958] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:26,959] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:26,959] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:26,959] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:26,959] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:26,959] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:26,959] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:26,959] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:26,985] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M50_featureCounts.out [2026-08-14 11:49:27,915] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M50_metrics [2026-08-14 11:49:27,920] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M50_metrics [2026-08-14 11:49:27,928] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M50_metrics [2026-08-14 11:49:27,998] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M29-GHR-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:49:28,001] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M29-GHR-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:49:28,103] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M29_SJ.out.tab [2026-08-14 11:49:28,108] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M29_SJ.out.tab [2026-08-14 11:49:28,109] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M29_SJ.out.tab [2026-08-14 11:49:28,109] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M29_SJ.out.tab [2026-08-14 11:49:28,116] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M29_SJ.out.tab [2026-08-14 11:49:28,116] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M29_SJ.out.tab [2026-08-14 11:49:28,116] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M29_SJ.out.tab [2026-08-14 11:49:28,116] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M29_SJ.out.tab [2026-08-14 11:49:28,116] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M29_SJ.out.tab [2026-08-14 11:49:28,116] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M29_SJ.out.tab [2026-08-14 11:49:28,116] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M29_SJ.out.tab [2026-08-14 11:49:28,116] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M29_SJ.out.tab [2026-08-14 11:49:28,116] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M29_SJ.out.tab [2026-08-14 11:49:28,117] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M29_SJ.out.tab [2026-08-14 11:49:30,102] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M29_marked_dup_metrics.txt [2026-08-14 11:49:30,106] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M29_marked_dup_metrics.txt [2026-08-14 11:49:30,107] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M29_marked_dup_metrics.txt [2026-08-14 11:49:30,107] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M29_marked_dup_metrics.txt [2026-08-14 11:49:30,114] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M29_marked_dup_metrics.txt [2026-08-14 11:49:30,131] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M29_hist.pdf [2026-08-14 11:49:30,146] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M29_metrics [2026-08-14 11:49:30,149] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M29_metrics [2026-08-14 11:49:30,150] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M29_metrics [2026-08-14 11:49:30,150] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M29_metrics [2026-08-14 11:49:30,156] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M29_metrics [2026-08-14 11:49:30,248] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:30,252] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:30,253] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:30,253] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:30,259] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:30,259] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:30,259] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:30,259] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:30,259] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:30,259] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:30,259] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:30,259] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:30,278] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:31,220] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:31,224] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:31,225] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:31,225] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:31,233] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:31,233] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:31,233] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:31,233] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:31,233] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:31,233] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:31,233] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:31,233] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:31,256] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M29_featureCounts.out [2026-08-14 11:49:32,175] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M29_metrics [2026-08-14 11:49:32,178] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M29_metrics [2026-08-14 11:49:32,184] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M29_metrics [2026-08-14 11:49:32,244] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M14-ERalpha-fl-fl_R1_001.fastq.gz [2026-08-14 11:49:32,247] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M14-ERalpha-fl-fl_R2_001.fastq.gz [2026-08-14 11:49:32,306] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M14_SJ.out.tab [2026-08-14 11:49:32,310] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M14_SJ.out.tab [2026-08-14 11:49:32,311] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M14_SJ.out.tab [2026-08-14 11:49:32,311] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M14_SJ.out.tab [2026-08-14 11:49:32,317] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M14_SJ.out.tab [2026-08-14 11:49:32,317] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M14_SJ.out.tab [2026-08-14 11:49:32,317] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M14_SJ.out.tab [2026-08-14 11:49:32,317] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M14_SJ.out.tab [2026-08-14 11:49:32,318] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M14_SJ.out.tab [2026-08-14 11:49:32,318] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M14_SJ.out.tab [2026-08-14 11:49:32,318] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M14_SJ.out.tab [2026-08-14 11:49:32,318] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M14_SJ.out.tab [2026-08-14 11:49:32,318] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M14_SJ.out.tab [2026-08-14 11:49:32,318] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M14_SJ.out.tab [2026-08-14 11:49:34,849] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M14_marked_dup_metrics.txt [2026-08-14 11:49:34,853] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M14_marked_dup_metrics.txt [2026-08-14 11:49:34,853] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M14_marked_dup_metrics.txt [2026-08-14 11:49:34,853] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M14_marked_dup_metrics.txt [2026-08-14 11:49:34,858] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M14_marked_dup_metrics.txt [2026-08-14 11:49:34,910] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M14_metrics [2026-08-14 11:49:34,914] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M14_metrics [2026-08-14 11:49:34,915] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M14_metrics [2026-08-14 11:49:34,915] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M14_metrics [2026-08-14 11:49:34,923] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M14_metrics [2026-08-14 11:49:34,967] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M14_hist.pdf [2026-08-14 11:49:35,024] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:35,028] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:35,028] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:35,029] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:35,035] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:35,035] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:35,035] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:35,035] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:35,035] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:35,035] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:35,036] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:35,036] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:35,062] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:36,030] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:36,033] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:36,034] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:36,034] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:36,043] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:36,043] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:36,043] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:36,043] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:36,043] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:36,043] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:36,043] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:36,043] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:36,069] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M14_featureCounts.out [2026-08-14 11:49:36,992] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M14_metrics [2026-08-14 11:49:36,997] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M14_metrics [2026-08-14 11:49:37,005] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M14_metrics [2026-08-14 11:49:37,082] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M06-GHR-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:49:37,085] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M06-GHR-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:49:37,152] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M06_SJ.out.tab [2026-08-14 11:49:37,155] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M06_SJ.out.tab [2026-08-14 11:49:37,156] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M06_SJ.out.tab [2026-08-14 11:49:37,156] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M06_SJ.out.tab [2026-08-14 11:49:37,163] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M06_SJ.out.tab [2026-08-14 11:49:37,163] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M06_SJ.out.tab [2026-08-14 11:49:37,164] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M06_SJ.out.tab [2026-08-14 11:49:37,164] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M06_SJ.out.tab [2026-08-14 11:49:37,164] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M06_SJ.out.tab [2026-08-14 11:49:37,164] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M06_SJ.out.tab [2026-08-14 11:49:37,164] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M06_SJ.out.tab [2026-08-14 11:49:37,164] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M06_SJ.out.tab [2026-08-14 11:49:37,164] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M06_SJ.out.tab [2026-08-14 11:49:37,164] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M06_SJ.out.tab [2026-08-14 11:49:39,458] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M06_marked_dup_metrics.txt [2026-08-14 11:49:39,461] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M06_marked_dup_metrics.txt [2026-08-14 11:49:39,462] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M06_marked_dup_metrics.txt [2026-08-14 11:49:39,462] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M06_marked_dup_metrics.txt [2026-08-14 11:49:39,467] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M06_marked_dup_metrics.txt [2026-08-14 11:49:39,507] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M06_metrics [2026-08-14 11:49:39,511] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M06_metrics [2026-08-14 11:49:39,512] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M06_metrics [2026-08-14 11:49:39,512] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M06_metrics [2026-08-14 11:49:39,519] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M06_metrics [2026-08-14 11:49:39,574] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M06_hist.pdf [2026-08-14 11:49:39,600] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:39,603] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:39,603] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:39,603] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:39,611] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:39,611] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:39,611] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:39,611] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:39,611] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:39,611] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:39,612] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:39,612] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:39,637] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:40,588] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:40,591] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:40,592] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:40,592] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:40,596] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:40,596] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:40,596] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:40,596] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:40,596] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:40,597] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:40,597] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:40,597] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:40,616] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M06_featureCounts.out [2026-08-14 11:49:41,551] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M06_metrics [2026-08-14 11:49:41,554] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M06_metrics [2026-08-14 11:49:41,560] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M06_metrics [2026-08-14 11:49:41,627] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M05-GHR-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:49:41,630] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M05-GHR-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:49:41,770] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M05_SJ.out.tab [2026-08-14 11:49:41,774] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M05_SJ.out.tab [2026-08-14 11:49:41,774] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M05_SJ.out.tab [2026-08-14 11:49:41,774] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M05_SJ.out.tab [2026-08-14 11:49:41,781] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M05_SJ.out.tab [2026-08-14 11:49:41,781] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M05_SJ.out.tab [2026-08-14 11:49:41,781] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M05_SJ.out.tab [2026-08-14 11:49:41,781] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M05_SJ.out.tab [2026-08-14 11:49:41,781] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M05_SJ.out.tab [2026-08-14 11:49:41,781] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M05_SJ.out.tab [2026-08-14 11:49:41,781] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M05_SJ.out.tab [2026-08-14 11:49:41,781] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M05_SJ.out.tab [2026-08-14 11:49:41,781] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M05_SJ.out.tab [2026-08-14 11:49:41,781] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M05_SJ.out.tab [2026-08-14 11:49:44,212] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M05_marked_dup_metrics.txt [2026-08-14 11:49:44,216] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M05_marked_dup_metrics.txt [2026-08-14 11:49:44,216] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M05_marked_dup_metrics.txt [2026-08-14 11:49:44,216] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M05_marked_dup_metrics.txt [2026-08-14 11:49:44,223] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M05_marked_dup_metrics.txt [2026-08-14 11:49:44,271] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M05_metrics [2026-08-14 11:49:44,275] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M05_metrics [2026-08-14 11:49:44,276] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M05_metrics [2026-08-14 11:49:44,276] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M05_metrics [2026-08-14 11:49:44,281] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M05_metrics [2026-08-14 11:49:44,334] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M05_hist.pdf [2026-08-14 11:49:44,365] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:44,368] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:44,369] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:44,369] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:44,375] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:44,375] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:44,375] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:44,375] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:44,376] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:44,376] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:44,376] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:44,376] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:44,395] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:45,349] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:45,354] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:45,354] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:45,354] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:45,360] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:45,360] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:45,360] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:45,360] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:45,360] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:45,360] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:45,360] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:45,360] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:45,380] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M05_featureCounts.out [2026-08-14 11:49:46,328] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M05_metrics [2026-08-14 11:49:46,331] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M05_metrics [2026-08-14 11:49:46,336] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M05_metrics [2026-08-14 11:49:46,392] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M55-GHR-ERa-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:49:46,395] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M55-GHR-ERa-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:49:46,579] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M55_SJ.out.tab [2026-08-14 11:49:46,583] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M55_SJ.out.tab [2026-08-14 11:49:46,583] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M55_SJ.out.tab [2026-08-14 11:49:46,583] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M55_SJ.out.tab [2026-08-14 11:49:46,590] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M55_SJ.out.tab [2026-08-14 11:49:46,590] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M55_SJ.out.tab [2026-08-14 11:49:46,590] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M55_SJ.out.tab [2026-08-14 11:49:46,590] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M55_SJ.out.tab [2026-08-14 11:49:46,590] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M55_SJ.out.tab [2026-08-14 11:49:46,591] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M55_SJ.out.tab [2026-08-14 11:49:46,591] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M55_SJ.out.tab [2026-08-14 11:49:46,591] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M55_SJ.out.tab [2026-08-14 11:49:46,591] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M55_SJ.out.tab [2026-08-14 11:49:46,591] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M55_SJ.out.tab [2026-08-14 11:49:48,701] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M55_marked_dup_metrics.txt [2026-08-14 11:49:48,706] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M55_marked_dup_metrics.txt [2026-08-14 11:49:48,707] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M55_marked_dup_metrics.txt [2026-08-14 11:49:48,707] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M55_marked_dup_metrics.txt [2026-08-14 11:49:48,713] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M55_marked_dup_metrics.txt [2026-08-14 11:49:48,746] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M55_metrics [2026-08-14 11:49:48,749] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M55_metrics [2026-08-14 11:49:48,750] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M55_metrics [2026-08-14 11:49:48,750] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M55_metrics [2026-08-14 11:49:48,758] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M55_metrics [2026-08-14 11:49:48,830] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M55_hist.pdf [2026-08-14 11:49:48,871] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:48,874] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:48,875] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:48,875] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:48,881] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:48,881] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:48,881] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:48,881] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:48,881] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:48,881] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:48,881] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:48,881] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:48,900] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:49,865] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:49,869] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:49,870] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:49,870] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:49,876] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:49,876] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:49,876] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:49,876] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:49,877] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:49,877] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:49,877] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:49,877] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:49,897] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M55_featureCounts.out [2026-08-14 11:49:50,797] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M55_metrics [2026-08-14 11:49:50,800] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M55_metrics [2026-08-14 11:49:50,805] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M55_metrics [2026-08-14 11:49:50,865] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M40-ERalpha-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:49:50,868] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M40-ERalpha-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:49:50,990] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M40_SJ.out.tab [2026-08-14 11:49:50,995] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M40_SJ.out.tab [2026-08-14 11:49:50,995] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M40_SJ.out.tab [2026-08-14 11:49:50,995] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M40_SJ.out.tab [2026-08-14 11:49:51,001] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M40_SJ.out.tab [2026-08-14 11:49:51,001] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M40_SJ.out.tab [2026-08-14 11:49:51,001] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M40_SJ.out.tab [2026-08-14 11:49:51,001] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M40_SJ.out.tab [2026-08-14 11:49:51,001] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M40_SJ.out.tab [2026-08-14 11:49:51,001] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M40_SJ.out.tab [2026-08-14 11:49:51,001] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M40_SJ.out.tab [2026-08-14 11:49:51,001] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M40_SJ.out.tab [2026-08-14 11:49:51,001] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M40_SJ.out.tab [2026-08-14 11:49:51,001] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M40_SJ.out.tab [2026-08-14 11:49:53,345] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M40_marked_dup_metrics.txt [2026-08-14 11:49:53,350] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M40_marked_dup_metrics.txt [2026-08-14 11:49:53,350] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M40_marked_dup_metrics.txt [2026-08-14 11:49:53,350] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M40_marked_dup_metrics.txt [2026-08-14 11:49:53,356] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M40_marked_dup_metrics.txt [2026-08-14 11:49:53,377] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M40_hist.pdf [2026-08-14 11:49:53,398] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M40_metrics [2026-08-14 11:49:53,401] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M40_metrics [2026-08-14 11:49:53,402] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M40_metrics [2026-08-14 11:49:53,402] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M40_metrics [2026-08-14 11:49:53,410] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M40_metrics [2026-08-14 11:49:53,493] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:53,498] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:53,498] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:53,498] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:53,505] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:53,505] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:53,505] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:53,505] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:53,505] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:53,505] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:53,505] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:53,505] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:53,525] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:54,478] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:54,482] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:54,482] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:54,482] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:54,488] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:54,488] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:54,488] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:54,488] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:54,488] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:54,488] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:54,488] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:54,488] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:54,507] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M40_featureCounts.out [2026-08-14 11:49:55,433] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M40_metrics [2026-08-14 11:49:55,435] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M40_metrics [2026-08-14 11:49:55,441] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M40_metrics [2026-08-14 11:49:55,494] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M19-ERalpha-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:49:55,497] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M19-ERalpha-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:49:55,667] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M19_SJ.out.tab [2026-08-14 11:49:55,672] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M19_SJ.out.tab [2026-08-14 11:49:55,672] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M19_SJ.out.tab [2026-08-14 11:49:55,673] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M19_SJ.out.tab [2026-08-14 11:49:55,681] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M19_SJ.out.tab [2026-08-14 11:49:55,681] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M19_SJ.out.tab [2026-08-14 11:49:55,681] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M19_SJ.out.tab [2026-08-14 11:49:55,681] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M19_SJ.out.tab [2026-08-14 11:49:55,681] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M19_SJ.out.tab [2026-08-14 11:49:55,681] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M19_SJ.out.tab [2026-08-14 11:49:55,681] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M19_SJ.out.tab [2026-08-14 11:49:55,681] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M19_SJ.out.tab [2026-08-14 11:49:55,681] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M19_SJ.out.tab [2026-08-14 11:49:55,682] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M19_SJ.out.tab [2026-08-14 11:49:57,934] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M19_marked_dup_metrics.txt [2026-08-14 11:49:57,938] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M19_marked_dup_metrics.txt [2026-08-14 11:49:57,939] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M19_marked_dup_metrics.txt [2026-08-14 11:49:57,939] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M19_marked_dup_metrics.txt [2026-08-14 11:49:57,945] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M19_marked_dup_metrics.txt [2026-08-14 11:49:57,973] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M19_metrics [2026-08-14 11:49:57,976] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M19_metrics [2026-08-14 11:49:57,977] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M19_metrics [2026-08-14 11:49:57,977] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M19_metrics [2026-08-14 11:49:57,982] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M19_metrics [2026-08-14 11:49:58,049] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M19_hist.pdf [2026-08-14 11:49:58,071] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:58,074] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:58,074] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:58,074] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:58,080] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:58,080] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:58,080] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:58,080] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:58,080] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:58,080] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:58,080] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:58,080] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:58,098] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:59,045] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:59,050] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:59,050] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:59,050] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:59,058] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:59,058] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:59,058] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:59,058] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:59,058] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:59,058] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:59,059] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:59,059] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:49:59,083] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M19_featureCounts.out [2026-08-14 11:50:00,013] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M19_metrics [2026-08-14 11:50:00,017] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M19_metrics [2026-08-14 11:50:00,023] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M19_metrics [2026-08-14 11:50:00,082] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M04-GHR-fl-fl_R2_001.fastq.gz [2026-08-14 11:50:00,085] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M04-GHR-fl-fl_R1_001.fastq.gz [2026-08-14 11:50:00,176] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M04_SJ.out.tab [2026-08-14 11:50:00,181] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M04_SJ.out.tab [2026-08-14 11:50:00,181] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M04_SJ.out.tab [2026-08-14 11:50:00,181] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M04_SJ.out.tab [2026-08-14 11:50:00,188] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M04_SJ.out.tab [2026-08-14 11:50:00,188] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M04_SJ.out.tab [2026-08-14 11:50:00,188] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M04_SJ.out.tab [2026-08-14 11:50:00,188] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M04_SJ.out.tab [2026-08-14 11:50:00,188] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M04_SJ.out.tab [2026-08-14 11:50:00,188] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M04_SJ.out.tab [2026-08-14 11:50:00,188] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M04_SJ.out.tab [2026-08-14 11:50:00,188] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M04_SJ.out.tab [2026-08-14 11:50:00,188] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M04_SJ.out.tab [2026-08-14 11:50:00,188] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M04_SJ.out.tab [2026-08-14 11:50:02,272] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M04_marked_dup_metrics.txt [2026-08-14 11:50:02,276] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M04_marked_dup_metrics.txt [2026-08-14 11:50:02,277] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M04_marked_dup_metrics.txt [2026-08-14 11:50:02,277] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M04_marked_dup_metrics.txt [2026-08-14 11:50:02,283] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M04_marked_dup_metrics.txt [2026-08-14 11:50:02,304] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M04_hist.pdf [2026-08-14 11:50:02,321] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M04_metrics [2026-08-14 11:50:02,324] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M04_metrics [2026-08-14 11:50:02,325] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M04_metrics [2026-08-14 11:50:02,325] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M04_metrics [2026-08-14 11:50:02,329] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M04_metrics [2026-08-14 11:50:02,458] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:02,462] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:02,462] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:02,462] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:02,469] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:02,469] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:02,469] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:02,469] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:02,469] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:02,469] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:02,469] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:02,469] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:02,488] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:03,463] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:03,467] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:03,467] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:03,468] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:03,475] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:03,475] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:03,475] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:03,475] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:03,475] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:03,475] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:03,475] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:03,475] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:03,494] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M04_featureCounts.out [2026-08-14 11:50:04,432] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M04_metrics [2026-08-14 11:50:04,436] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M04_metrics [2026-08-14 11:50:04,442] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M04_metrics [2026-08-14 11:50:04,517] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M54-GHR-ERa-fl-fl_R2_001.fastq.gz [2026-08-14 11:50:04,520] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M54-GHR-ERa-fl-fl_R1_001.fastq.gz [2026-08-14 11:50:04,738] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M54_SJ.out.tab [2026-08-14 11:50:04,743] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M54_SJ.out.tab [2026-08-14 11:50:04,743] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M54_SJ.out.tab [2026-08-14 11:50:04,743] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M54_SJ.out.tab [2026-08-14 11:50:04,753] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M54_SJ.out.tab [2026-08-14 11:50:04,753] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M54_SJ.out.tab [2026-08-14 11:50:04,753] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M54_SJ.out.tab [2026-08-14 11:50:04,753] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M54_SJ.out.tab [2026-08-14 11:50:04,753] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M54_SJ.out.tab [2026-08-14 11:50:04,753] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M54_SJ.out.tab [2026-08-14 11:50:04,753] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M54_SJ.out.tab [2026-08-14 11:50:04,753] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M54_SJ.out.tab [2026-08-14 11:50:04,754] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M54_SJ.out.tab [2026-08-14 11:50:04,754] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M54_SJ.out.tab [2026-08-14 11:50:07,152] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M54_marked_dup_metrics.txt [2026-08-14 11:50:07,157] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M54_marked_dup_metrics.txt [2026-08-14 11:50:07,157] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M54_marked_dup_metrics.txt [2026-08-14 11:50:07,157] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M54_marked_dup_metrics.txt [2026-08-14 11:50:07,166] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M54_marked_dup_metrics.txt [2026-08-14 11:50:07,210] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M54_metrics [2026-08-14 11:50:07,215] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M54_metrics [2026-08-14 11:50:07,215] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M54_metrics [2026-08-14 11:50:07,215] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M54_metrics [2026-08-14 11:50:07,221] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M54_metrics [2026-08-14 11:50:07,287] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M54_hist.pdf [2026-08-14 11:50:07,321] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:07,328] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:07,328] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:07,328] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:07,343] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:07,343] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:07,343] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:07,343] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:07,343] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:07,344] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:07,344] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:07,344] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:07,369] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:08,324] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:08,327] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:08,327] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:08,327] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:08,333] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:08,333] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:08,333] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:08,333] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:08,333] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:08,333] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:08,333] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:08,333] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:08,352] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M54_featureCounts.out [2026-08-14 11:50:09,293] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M54_metrics [2026-08-14 11:50:09,297] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M54_metrics [2026-08-14 11:50:09,301] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M54_metrics [2026-08-14 11:50:09,354] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M18-ERalpha-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:50:09,357] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M18-ERalpha-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:50:09,443] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M18_SJ.out.tab [2026-08-14 11:50:09,446] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M18_SJ.out.tab [2026-08-14 11:50:09,447] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M18_SJ.out.tab [2026-08-14 11:50:09,447] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M18_SJ.out.tab [2026-08-14 11:50:09,453] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M18_SJ.out.tab [2026-08-14 11:50:09,453] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M18_SJ.out.tab [2026-08-14 11:50:09,453] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M18_SJ.out.tab [2026-08-14 11:50:09,453] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M18_SJ.out.tab [2026-08-14 11:50:09,453] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M18_SJ.out.tab [2026-08-14 11:50:09,453] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M18_SJ.out.tab [2026-08-14 11:50:09,453] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M18_SJ.out.tab [2026-08-14 11:50:09,453] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M18_SJ.out.tab [2026-08-14 11:50:09,453] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M18_SJ.out.tab [2026-08-14 11:50:09,453] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M18_SJ.out.tab [2026-08-14 11:50:11,604] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M18_marked_dup_metrics.txt [2026-08-14 11:50:11,607] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M18_marked_dup_metrics.txt [2026-08-14 11:50:11,608] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M18_marked_dup_metrics.txt [2026-08-14 11:50:11,608] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M18_marked_dup_metrics.txt [2026-08-14 11:50:11,614] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M18_marked_dup_metrics.txt [2026-08-14 11:50:11,648] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M18_metrics [2026-08-14 11:50:11,653] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M18_metrics [2026-08-14 11:50:11,653] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M18_metrics [2026-08-14 11:50:11,653] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M18_metrics [2026-08-14 11:50:11,658] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M18_metrics [2026-08-14 11:50:11,708] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M18_hist.pdf [2026-08-14 11:50:11,757] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:11,762] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:11,762] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:11,762] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:11,769] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:11,769] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:11,769] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:11,769] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:11,769] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:11,769] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:11,769] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:11,769] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:11,789] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:12,745] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:12,749] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:12,750] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:12,750] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:12,757] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:12,757] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:12,757] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:12,757] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:12,757] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:12,757] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:12,757] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:12,757] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:12,777] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M18_featureCounts.out [2026-08-14 11:50:13,677] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M18_metrics [2026-08-14 11:50:13,680] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M18_metrics [2026-08-14 11:50:13,687] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M18_metrics [2026-08-14 11:50:13,752] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M03-GHR-fl-fl_R1_001.fastq.gz [2026-08-14 11:50:13,755] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M03-GHR-fl-fl_R2_001.fastq.gz [2026-08-14 11:50:13,911] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M03_SJ.out.tab [2026-08-14 11:50:13,915] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M03_SJ.out.tab [2026-08-14 11:50:13,916] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M03_SJ.out.tab [2026-08-14 11:50:13,916] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M03_SJ.out.tab [2026-08-14 11:50:13,922] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M03_SJ.out.tab [2026-08-14 11:50:13,922] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M03_SJ.out.tab [2026-08-14 11:50:13,922] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M03_SJ.out.tab [2026-08-14 11:50:13,922] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M03_SJ.out.tab [2026-08-14 11:50:13,922] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M03_SJ.out.tab [2026-08-14 11:50:13,922] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M03_SJ.out.tab [2026-08-14 11:50:13,922] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M03_SJ.out.tab [2026-08-14 11:50:13,922] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M03_SJ.out.tab [2026-08-14 11:50:13,922] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M03_SJ.out.tab [2026-08-14 11:50:13,922] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M03_SJ.out.tab [2026-08-14 11:50:16,088] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M03_marked_dup_metrics.txt [2026-08-14 11:50:16,092] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M03_marked_dup_metrics.txt [2026-08-14 11:50:16,092] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M03_marked_dup_metrics.txt [2026-08-14 11:50:16,093] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M03_marked_dup_metrics.txt [2026-08-14 11:50:16,100] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M03_marked_dup_metrics.txt [2026-08-14 11:50:16,117] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M03_hist.pdf [2026-08-14 11:50:16,142] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M03_metrics [2026-08-14 11:50:16,146] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M03_metrics [2026-08-14 11:50:16,146] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M03_metrics [2026-08-14 11:50:16,147] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M03_metrics [2026-08-14 11:50:16,153] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M03_metrics [2026-08-14 11:50:16,247] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:16,251] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:16,251] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:16,251] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:16,258] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:16,258] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:16,258] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:16,258] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:16,259] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:16,259] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:16,259] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:16,259] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:16,279] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:17,235] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:17,238] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:17,239] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:17,239] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:17,245] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:17,245] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:17,245] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:17,245] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:17,245] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:17,245] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:17,245] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:17,245] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:17,264] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M03_featureCounts.out [2026-08-14 11:50:18,197] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M03_metrics [2026-08-14 11:50:18,200] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M03_metrics [2026-08-14 11:50:18,206] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M03_metrics [2026-08-14 11:50:18,265] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M53-GHR-ERa-fl-fl_R2_001.fastq.gz [2026-08-14 11:50:18,267] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M53-GHR-ERa-fl-fl_R1_001.fastq.gz [2026-08-14 11:50:18,354] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M53_SJ.out.tab [2026-08-14 11:50:18,357] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M53_SJ.out.tab [2026-08-14 11:50:18,358] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M53_SJ.out.tab [2026-08-14 11:50:18,358] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M53_SJ.out.tab [2026-08-14 11:50:18,362] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M53_SJ.out.tab [2026-08-14 11:50:18,362] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M53_SJ.out.tab [2026-08-14 11:50:18,362] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M53_SJ.out.tab [2026-08-14 11:50:18,362] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M53_SJ.out.tab [2026-08-14 11:50:18,362] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M53_SJ.out.tab [2026-08-14 11:50:18,362] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M53_SJ.out.tab [2026-08-14 11:50:18,362] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M53_SJ.out.tab [2026-08-14 11:50:18,362] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M53_SJ.out.tab [2026-08-14 11:50:18,362] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M53_SJ.out.tab [2026-08-14 11:50:18,362] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M53_SJ.out.tab [2026-08-14 11:50:20,583] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M53_marked_dup_metrics.txt [2026-08-14 11:50:20,588] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M53_marked_dup_metrics.txt [2026-08-14 11:50:20,589] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M53_marked_dup_metrics.txt [2026-08-14 11:50:20,589] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M53_marked_dup_metrics.txt [2026-08-14 11:50:20,596] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M53_marked_dup_metrics.txt [2026-08-14 11:50:20,648] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M53_metrics [2026-08-14 11:50:20,651] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M53_metrics [2026-08-14 11:50:20,651] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M53_metrics [2026-08-14 11:50:20,651] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M53_metrics [2026-08-14 11:50:20,656] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M53_metrics [2026-08-14 11:50:20,712] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M53_hist.pdf [2026-08-14 11:50:20,748] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:20,752] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:20,753] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:20,753] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:20,759] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:20,759] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:20,759] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:20,759] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:20,759] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:20,759] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:20,759] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:20,759] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:20,779] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:21,734] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:21,738] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:21,739] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:21,739] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:21,746] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:21,746] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:21,746] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:21,746] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:21,746] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:21,746] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:21,746] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:21,746] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:21,765] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M53_featureCounts.out [2026-08-14 11:50:22,687] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M53_metrics [2026-08-14 11:50:22,690] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M53_metrics [2026-08-14 11:50:22,695] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M53_metrics [2026-08-14 11:50:22,764] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M09-GHR-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:50:22,767] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M09-GHR-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:50:22,858] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M09_SJ.out.tab [2026-08-14 11:50:22,862] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M09_SJ.out.tab [2026-08-14 11:50:22,863] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M09_SJ.out.tab [2026-08-14 11:50:22,863] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M09_SJ.out.tab [2026-08-14 11:50:22,869] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M09_SJ.out.tab [2026-08-14 11:50:22,869] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M09_SJ.out.tab [2026-08-14 11:50:22,870] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M09_SJ.out.tab [2026-08-14 11:50:22,870] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M09_SJ.out.tab [2026-08-14 11:50:22,870] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M09_SJ.out.tab [2026-08-14 11:50:22,870] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M09_SJ.out.tab [2026-08-14 11:50:22,870] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M09_SJ.out.tab [2026-08-14 11:50:22,870] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M09_SJ.out.tab [2026-08-14 11:50:22,870] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M09_SJ.out.tab [2026-08-14 11:50:22,870] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M09_SJ.out.tab [2026-08-14 11:50:25,026] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M09_marked_dup_metrics.txt [2026-08-14 11:50:25,029] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M09_marked_dup_metrics.txt [2026-08-14 11:50:25,030] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M09_marked_dup_metrics.txt [2026-08-14 11:50:25,030] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M09_marked_dup_metrics.txt [2026-08-14 11:50:25,034] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M09_marked_dup_metrics.txt [2026-08-14 11:50:25,066] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M09_metrics [2026-08-14 11:50:25,071] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M09_metrics [2026-08-14 11:50:25,071] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M09_metrics [2026-08-14 11:50:25,071] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M09_metrics [2026-08-14 11:50:25,078] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M09_metrics [2026-08-14 11:50:25,137] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M09_hist.pdf [2026-08-14 11:50:25,193] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:25,198] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:25,198] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:25,199] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:25,205] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:25,205] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:25,206] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:25,206] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:25,206] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:25,206] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:25,206] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:25,206] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:25,226] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:26,198] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:26,202] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:26,203] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:26,203] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:26,209] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:26,209] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:26,210] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:26,210] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:26,210] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:26,210] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:26,210] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:26,210] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:26,236] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M09_featureCounts.out [2026-08-14 11:50:27,154] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M09_metrics [2026-08-14 11:50:27,158] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M09_metrics [2026-08-14 11:50:27,163] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M09_metrics [2026-08-14 11:50:27,220] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M59-GHR-ERa-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:50:27,223] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M59-GHR-ERa-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:50:27,401] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M59_SJ.out.tab [2026-08-14 11:50:27,406] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M59_SJ.out.tab [2026-08-14 11:50:27,406] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M59_SJ.out.tab [2026-08-14 11:50:27,406] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M59_SJ.out.tab [2026-08-14 11:50:27,412] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M59_SJ.out.tab [2026-08-14 11:50:27,412] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M59_SJ.out.tab [2026-08-14 11:50:27,412] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M59_SJ.out.tab [2026-08-14 11:50:27,412] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M59_SJ.out.tab [2026-08-14 11:50:27,412] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M59_SJ.out.tab [2026-08-14 11:50:27,412] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M59_SJ.out.tab [2026-08-14 11:50:27,412] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M59_SJ.out.tab [2026-08-14 11:50:27,413] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M59_SJ.out.tab [2026-08-14 11:50:27,413] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M59_SJ.out.tab [2026-08-14 11:50:27,413] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M59_SJ.out.tab [2026-08-14 11:50:29,645] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M59_marked_dup_metrics.txt [2026-08-14 11:50:29,648] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M59_marked_dup_metrics.txt [2026-08-14 11:50:29,648] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M59_marked_dup_metrics.txt [2026-08-14 11:50:29,648] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M59_marked_dup_metrics.txt [2026-08-14 11:50:29,653] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M59_marked_dup_metrics.txt [2026-08-14 11:50:29,671] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M59_hist.pdf [2026-08-14 11:50:29,694] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M59_metrics [2026-08-14 11:50:29,699] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M59_metrics [2026-08-14 11:50:29,699] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M59_metrics [2026-08-14 11:50:29,699] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M59_metrics [2026-08-14 11:50:29,706] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M59_metrics [2026-08-14 11:50:29,793] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:29,797] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:29,798] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:29,798] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:29,805] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:29,805] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:29,805] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:29,805] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:29,805] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:29,805] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:29,805] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:29,805] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:29,825] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:30,784] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:30,788] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:30,788] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:30,788] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:30,794] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:30,795] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:30,795] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:30,795] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:30,795] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:30,795] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:30,795] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:30,795] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:30,814] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M59_featureCounts.out [2026-08-14 11:50:31,732] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M59_metrics [2026-08-14 11:50:31,736] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M59_metrics [2026-08-14 11:50:31,741] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M59_metrics [2026-08-14 11:50:31,786] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M52-GHR-ERa-fl-fl_R2_001.fastq.gz [2026-08-14 11:50:31,789] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M52-GHR-ERa-fl-fl_R1_001.fastq.gz [2026-08-14 11:50:31,936] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M52_SJ.out.tab [2026-08-14 11:50:31,940] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M52_SJ.out.tab [2026-08-14 11:50:31,941] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M52_SJ.out.tab [2026-08-14 11:50:31,941] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M52_SJ.out.tab [2026-08-14 11:50:31,947] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M52_SJ.out.tab [2026-08-14 11:50:31,947] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M52_SJ.out.tab [2026-08-14 11:50:31,947] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M52_SJ.out.tab [2026-08-14 11:50:31,947] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M52_SJ.out.tab [2026-08-14 11:50:31,947] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M52_SJ.out.tab [2026-08-14 11:50:31,947] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M52_SJ.out.tab [2026-08-14 11:50:31,947] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M52_SJ.out.tab [2026-08-14 11:50:31,947] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M52_SJ.out.tab [2026-08-14 11:50:31,947] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M52_SJ.out.tab [2026-08-14 11:50:31,947] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M52_SJ.out.tab [2026-08-14 11:50:34,141] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M52_marked_dup_metrics.txt [2026-08-14 11:50:34,144] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M52_marked_dup_metrics.txt [2026-08-14 11:50:34,144] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M52_marked_dup_metrics.txt [2026-08-14 11:50:34,144] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M52_marked_dup_metrics.txt [2026-08-14 11:50:34,151] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M52_marked_dup_metrics.txt [2026-08-14 11:50:34,180] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M52_hist.pdf [2026-08-14 11:50:34,205] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M52_metrics [2026-08-14 11:50:34,209] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M52_metrics [2026-08-14 11:50:34,209] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M52_metrics [2026-08-14 11:50:34,209] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M52_metrics [2026-08-14 11:50:34,215] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M52_metrics [2026-08-14 11:50:34,333] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:34,337] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:34,338] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:34,338] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:34,345] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:34,345] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:34,345] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:34,345] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:34,345] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:34,345] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:34,345] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:34,345] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:34,365] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:35,310] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:35,315] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:35,316] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:35,316] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:35,321] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:35,321] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:35,321] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:35,321] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:35,321] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:35,321] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:35,321] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:35,321] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:35,341] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M52_featureCounts.out [2026-08-14 11:50:36,245] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M52_metrics [2026-08-14 11:50:36,248] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M52_metrics [2026-08-14 11:50:36,253] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M52_metrics [2026-08-14 11:50:36,303] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M44-GHR-ERa-fl-fl_R2_001.fastq.gz [2026-08-14 11:50:36,306] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M44-GHR-ERa-fl-fl_R1_001.fastq.gz [2026-08-14 11:50:36,446] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M44_SJ.out.tab [2026-08-14 11:50:36,450] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M44_SJ.out.tab [2026-08-14 11:50:36,450] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M44_SJ.out.tab [2026-08-14 11:50:36,451] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M44_SJ.out.tab [2026-08-14 11:50:36,458] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M44_SJ.out.tab [2026-08-14 11:50:36,458] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M44_SJ.out.tab [2026-08-14 11:50:36,458] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M44_SJ.out.tab [2026-08-14 11:50:36,458] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M44_SJ.out.tab [2026-08-14 11:50:36,458] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M44_SJ.out.tab [2026-08-14 11:50:36,458] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M44_SJ.out.tab [2026-08-14 11:50:36,458] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M44_SJ.out.tab [2026-08-14 11:50:36,458] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M44_SJ.out.tab [2026-08-14 11:50:36,459] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M44_SJ.out.tab [2026-08-14 11:50:36,459] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M44_SJ.out.tab [2026-08-14 11:50:38,584] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M44_marked_dup_metrics.txt [2026-08-14 11:50:38,588] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M44_marked_dup_metrics.txt [2026-08-14 11:50:38,589] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M44_marked_dup_metrics.txt [2026-08-14 11:50:38,589] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M44_marked_dup_metrics.txt [2026-08-14 11:50:38,598] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M44_marked_dup_metrics.txt [2026-08-14 11:50:38,624] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M44_hist.pdf [2026-08-14 11:50:38,639] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M44_metrics [2026-08-14 11:50:38,642] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M44_metrics [2026-08-14 11:50:38,642] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M44_metrics [2026-08-14 11:50:38,642] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M44_metrics [2026-08-14 11:50:38,650] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M44_metrics [2026-08-14 11:50:38,725] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:38,730] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:38,730] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:38,730] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:38,736] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:38,736] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:38,737] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:38,737] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:38,737] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:38,737] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:38,737] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:38,737] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:38,756] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:39,702] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:39,706] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:39,707] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:39,707] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:39,714] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:39,714] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:39,714] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:39,714] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:39,714] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:39,715] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:39,715] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:39,715] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:39,734] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M44_featureCounts.out [2026-08-14 11:50:40,670] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M44_metrics [2026-08-14 11:50:40,675] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M44_metrics [2026-08-14 11:50:40,680] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M44_metrics [2026-08-14 11:50:40,727] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M08-GHR-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:50:40,730] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M08-GHR-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:50:40,759] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M08_SJ.out.tab [2026-08-14 11:50:40,763] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M08_SJ.out.tab [2026-08-14 11:50:40,764] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M08_SJ.out.tab [2026-08-14 11:50:40,764] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M08_SJ.out.tab [2026-08-14 11:50:40,770] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M08_SJ.out.tab [2026-08-14 11:50:40,770] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M08_SJ.out.tab [2026-08-14 11:50:40,770] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M08_SJ.out.tab [2026-08-14 11:50:40,771] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M08_SJ.out.tab [2026-08-14 11:50:40,771] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M08_SJ.out.tab [2026-08-14 11:50:40,771] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M08_SJ.out.tab [2026-08-14 11:50:40,771] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M08_SJ.out.tab [2026-08-14 11:50:40,771] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M08_SJ.out.tab [2026-08-14 11:50:40,771] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M08_SJ.out.tab [2026-08-14 11:50:40,771] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M08_SJ.out.tab [2026-08-14 11:50:43,073] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M08_marked_dup_metrics.txt [2026-08-14 11:50:43,077] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M08_marked_dup_metrics.txt [2026-08-14 11:50:43,078] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M08_marked_dup_metrics.txt [2026-08-14 11:50:43,078] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M08_marked_dup_metrics.txt [2026-08-14 11:50:43,083] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M08_marked_dup_metrics.txt [2026-08-14 11:50:43,132] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M08_metrics [2026-08-14 11:50:43,136] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M08_metrics [2026-08-14 11:50:43,136] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M08_metrics [2026-08-14 11:50:43,136] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M08_metrics [2026-08-14 11:50:43,144] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M08_metrics [2026-08-14 11:50:43,214] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M08_hist.pdf [2026-08-14 11:50:43,266] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:43,270] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:43,271] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:43,271] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:43,277] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:43,277] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:43,277] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:43,277] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:43,277] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:43,277] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:43,277] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:43,277] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:43,297] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:44,252] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:44,255] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:44,255] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:44,255] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:44,261] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:44,261] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:44,261] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:44,261] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:44,262] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:44,262] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:44,262] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:44,262] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:44,281] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M08_featureCounts.out [2026-08-14 11:50:45,222] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M08_metrics [2026-08-14 11:50:45,226] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M08_metrics [2026-08-14 11:50:45,232] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M08_metrics [2026-08-14 11:50:45,281] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M58-GHR-ERa-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:50:45,284] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M58-GHR-ERa-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:50:45,365] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M58_SJ.out.tab [2026-08-14 11:50:45,369] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M58_SJ.out.tab [2026-08-14 11:50:45,369] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M58_SJ.out.tab [2026-08-14 11:50:45,369] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M58_SJ.out.tab [2026-08-14 11:50:45,377] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M58_SJ.out.tab [2026-08-14 11:50:45,377] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M58_SJ.out.tab [2026-08-14 11:50:45,377] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M58_SJ.out.tab [2026-08-14 11:50:45,377] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M58_SJ.out.tab [2026-08-14 11:50:45,377] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M58_SJ.out.tab [2026-08-14 11:50:45,378] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M58_SJ.out.tab [2026-08-14 11:50:45,378] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M58_SJ.out.tab [2026-08-14 11:50:45,378] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M58_SJ.out.tab [2026-08-14 11:50:45,378] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M58_SJ.out.tab [2026-08-14 11:50:45,378] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M58_SJ.out.tab [2026-08-14 11:50:47,708] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M58_marked_dup_metrics.txt [2026-08-14 11:50:47,712] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M58_marked_dup_metrics.txt [2026-08-14 11:50:47,713] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M58_marked_dup_metrics.txt [2026-08-14 11:50:47,713] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M58_marked_dup_metrics.txt [2026-08-14 11:50:47,720] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M58_marked_dup_metrics.txt [2026-08-14 11:50:47,743] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M58_hist.pdf [2026-08-14 11:50:47,758] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M58_metrics [2026-08-14 11:50:47,761] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M58_metrics [2026-08-14 11:50:47,761] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M58_metrics [2026-08-14 11:50:47,761] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M58_metrics [2026-08-14 11:50:47,766] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M58_metrics [2026-08-14 11:50:47,875] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:47,880] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:47,880] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:47,880] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:47,888] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:47,888] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:47,888] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:47,889] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:47,889] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:47,889] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:47,889] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:47,889] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:47,912] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:48,860] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:48,864] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:48,865] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:48,865] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:48,870] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:48,870] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:48,870] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:48,870] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:48,870] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:48,870] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:48,870] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:48,870] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:48,889] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M58_featureCounts.out [2026-08-14 11:50:49,774] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M58_metrics [2026-08-14 11:50:49,777] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M58_metrics [2026-08-14 11:50:49,781] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M58_metrics [2026-08-14 11:50:49,835] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M43-GHR-ERa-fl-fl_R1_001.fastq.gz [2026-08-14 11:50:49,838] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M43-GHR-ERa-fl-fl_R2_001.fastq.gz [2026-08-14 11:50:49,978] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M43_SJ.out.tab [2026-08-14 11:50:49,982] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M43_SJ.out.tab [2026-08-14 11:50:49,983] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M43_SJ.out.tab [2026-08-14 11:50:49,983] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M43_SJ.out.tab [2026-08-14 11:50:49,989] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M43_SJ.out.tab [2026-08-14 11:50:49,989] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M43_SJ.out.tab [2026-08-14 11:50:49,989] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M43_SJ.out.tab [2026-08-14 11:50:49,989] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M43_SJ.out.tab [2026-08-14 11:50:49,990] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M43_SJ.out.tab [2026-08-14 11:50:49,990] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M43_SJ.out.tab [2026-08-14 11:50:49,990] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M43_SJ.out.tab [2026-08-14 11:50:49,990] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M43_SJ.out.tab [2026-08-14 11:50:49,990] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M43_SJ.out.tab [2026-08-14 11:50:49,990] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M43_SJ.out.tab [2026-08-14 11:50:52,188] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M43_marked_dup_metrics.txt [2026-08-14 11:50:52,192] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M43_marked_dup_metrics.txt [2026-08-14 11:50:52,192] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M43_marked_dup_metrics.txt [2026-08-14 11:50:52,193] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M43_marked_dup_metrics.txt [2026-08-14 11:50:52,199] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M43_marked_dup_metrics.txt [2026-08-14 11:50:52,233] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M43_metrics [2026-08-14 11:50:52,237] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M43_metrics [2026-08-14 11:50:52,238] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M43_metrics [2026-08-14 11:50:52,238] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M43_metrics [2026-08-14 11:50:52,243] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M43_metrics [2026-08-14 11:50:52,295] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M43_hist.pdf [2026-08-14 11:50:52,328] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:52,332] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:52,332] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:52,333] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:52,339] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:52,339] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:52,339] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:52,339] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:52,339] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:52,339] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:52,339] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:52,339] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:52,359] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:53,285] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:53,288] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:53,289] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:53,289] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:53,294] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:53,294] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:53,294] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:53,294] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:53,294] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:53,294] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:53,294] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:53,294] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:53,312] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M43_featureCounts.out [2026-08-14 11:50:54,224] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M43_metrics [2026-08-14 11:50:54,228] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M43_metrics [2026-08-14 11:50:54,233] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M43_metrics [2026-08-14 11:50:54,287] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M07-GHR-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:50:54,290] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M07-GHR-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:50:54,448] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M07_SJ.out.tab [2026-08-14 11:50:54,452] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M07_SJ.out.tab [2026-08-14 11:50:54,453] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M07_SJ.out.tab [2026-08-14 11:50:54,453] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M07_SJ.out.tab [2026-08-14 11:50:54,461] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M07_SJ.out.tab [2026-08-14 11:50:54,461] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M07_SJ.out.tab [2026-08-14 11:50:54,461] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M07_SJ.out.tab [2026-08-14 11:50:54,461] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M07_SJ.out.tab [2026-08-14 11:50:54,461] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M07_SJ.out.tab [2026-08-14 11:50:54,462] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M07_SJ.out.tab [2026-08-14 11:50:54,462] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M07_SJ.out.tab [2026-08-14 11:50:54,462] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M07_SJ.out.tab [2026-08-14 11:50:54,462] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M07_SJ.out.tab [2026-08-14 11:50:54,462] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M07_SJ.out.tab [2026-08-14 11:50:56,520] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M07_marked_dup_metrics.txt [2026-08-14 11:50:56,523] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M07_marked_dup_metrics.txt [2026-08-14 11:50:56,537] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M07_marked_dup_metrics.txt [2026-08-14 11:50:56,537] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M07_marked_dup_metrics.txt [2026-08-14 11:50:56,543] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M07_marked_dup_metrics.txt [2026-08-14 11:50:56,569] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M07_hist.pdf [2026-08-14 11:50:56,595] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M07_metrics [2026-08-14 11:50:56,597] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M07_metrics [2026-08-14 11:50:56,598] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M07_metrics [2026-08-14 11:50:56,598] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M07_metrics [2026-08-14 11:50:56,604] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M07_metrics [2026-08-14 11:50:56,699] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:56,703] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:56,704] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:56,704] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:56,710] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:56,710] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:56,711] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:56,711] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:56,711] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:56,711] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:56,711] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:56,711] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:56,730] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:57,674] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:57,678] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:57,678] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:57,678] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:57,686] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:57,686] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:57,686] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:57,686] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:57,686] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:57,687] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:57,687] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:57,687] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:57,709] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M07_featureCounts.out [2026-08-14 11:50:58,633] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M07_metrics [2026-08-14 11:50:58,638] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M07_metrics [2026-08-14 11:50:58,646] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M07_metrics [2026-08-14 11:50:58,705] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M57-GHR-ERa-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:50:58,708] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M57-GHR-ERa-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:50:58,752] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M57_SJ.out.tab [2026-08-14 11:50:58,757] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M57_SJ.out.tab [2026-08-14 11:50:58,757] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M57_SJ.out.tab [2026-08-14 11:50:58,758] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M57_SJ.out.tab [2026-08-14 11:50:58,764] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M57_SJ.out.tab [2026-08-14 11:50:58,764] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M57_SJ.out.tab [2026-08-14 11:50:58,764] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M57_SJ.out.tab [2026-08-14 11:50:58,764] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M57_SJ.out.tab [2026-08-14 11:50:58,764] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M57_SJ.out.tab [2026-08-14 11:50:58,764] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M57_SJ.out.tab [2026-08-14 11:50:58,764] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M57_SJ.out.tab [2026-08-14 11:50:58,764] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M57_SJ.out.tab [2026-08-14 11:50:58,764] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M57_SJ.out.tab [2026-08-14 11:50:58,764] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M57_SJ.out.tab [2026-08-14 11:51:00,753] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M57_marked_dup_metrics.txt [2026-08-14 11:51:00,757] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M57_marked_dup_metrics.txt [2026-08-14 11:51:00,758] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M57_marked_dup_metrics.txt [2026-08-14 11:51:00,758] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M57_marked_dup_metrics.txt [2026-08-14 11:51:00,766] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M57_marked_dup_metrics.txt [2026-08-14 11:51:00,794] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M57_hist.pdf [2026-08-14 11:51:00,815] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M57_metrics [2026-08-14 11:51:00,820] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M57_metrics [2026-08-14 11:51:00,820] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M57_metrics [2026-08-14 11:51:00,820] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M57_metrics [2026-08-14 11:51:00,827] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M57_metrics [2026-08-14 11:51:00,946] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:00,950] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:00,950] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:00,950] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:00,958] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:00,959] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:00,959] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:00,959] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:00,959] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:00,959] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:00,959] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:00,959] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:00,983] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:01,930] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:01,935] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:01,971] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:01,971] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:01,979] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:01,979] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:01,979] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:01,979] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:01,979] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:01,979] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:01,979] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:01,979] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:02,001] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M57_featureCounts.out [2026-08-14 11:51:02,952] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M57_metrics [2026-08-14 11:51:02,955] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M57_metrics [2026-08-14 11:51:02,959] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M57_metrics [2026-08-14 11:51:03,006] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M49-GHR-ERa-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:51:03,009] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M49-GHR-ERa-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:51:03,074] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M49_SJ.out.tab [2026-08-14 11:51:03,079] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M49_SJ.out.tab [2026-08-14 11:51:03,079] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M49_SJ.out.tab [2026-08-14 11:51:03,079] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M49_SJ.out.tab [2026-08-14 11:51:03,086] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M49_SJ.out.tab [2026-08-14 11:51:03,086] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M49_SJ.out.tab [2026-08-14 11:51:03,086] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M49_SJ.out.tab [2026-08-14 11:51:03,086] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M49_SJ.out.tab [2026-08-14 11:51:03,086] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M49_SJ.out.tab [2026-08-14 11:51:03,086] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M49_SJ.out.tab [2026-08-14 11:51:03,086] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M49_SJ.out.tab [2026-08-14 11:51:03,086] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M49_SJ.out.tab [2026-08-14 11:51:03,086] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M49_SJ.out.tab [2026-08-14 11:51:03,086] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M49_SJ.out.tab [2026-08-14 11:51:05,041] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M49_marked_dup_metrics.txt [2026-08-14 11:51:05,045] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M49_marked_dup_metrics.txt [2026-08-14 11:51:05,046] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M49_marked_dup_metrics.txt [2026-08-14 11:51:05,046] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M49_marked_dup_metrics.txt [2026-08-14 11:51:05,051] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M49_marked_dup_metrics.txt [2026-08-14 11:51:05,099] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M49_metrics [2026-08-14 11:51:05,103] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M49_metrics [2026-08-14 11:51:05,104] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M49_metrics [2026-08-14 11:51:05,104] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M49_metrics [2026-08-14 11:51:05,110] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M49_metrics [2026-08-14 11:51:05,138] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M49_hist.pdf [2026-08-14 11:51:05,166] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:05,170] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:05,170] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:05,170] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:05,176] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:05,176] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:05,176] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:05,176] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:05,176] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:05,176] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:05,176] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:05,176] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:05,194] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:06,155] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:06,159] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:06,159] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:06,159] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:06,166] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:06,166] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:06,166] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:06,166] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:06,166] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:06,166] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:06,166] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:06,166] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:06,186] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M49_featureCounts.out [2026-08-14 11:51:07,112] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M49_metrics [2026-08-14 11:51:07,115] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M49_metrics [2026-08-14 11:51:07,121] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M49_metrics [2026-08-14 11:51:07,174] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M42-GHR-ERa-fl-fl_R2_001.fastq.gz [2026-08-14 11:51:07,176] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M42-GHR-ERa-fl-fl_R1_001.fastq.gz [2026-08-14 11:51:07,296] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M42_SJ.out.tab [2026-08-14 11:51:07,300] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M42_SJ.out.tab [2026-08-14 11:51:07,300] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M42_SJ.out.tab [2026-08-14 11:51:07,300] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M42_SJ.out.tab [2026-08-14 11:51:07,306] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M42_SJ.out.tab [2026-08-14 11:51:07,306] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M42_SJ.out.tab [2026-08-14 11:51:07,306] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M42_SJ.out.tab [2026-08-14 11:51:07,306] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M42_SJ.out.tab [2026-08-14 11:51:07,306] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M42_SJ.out.tab [2026-08-14 11:51:07,306] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M42_SJ.out.tab [2026-08-14 11:51:07,306] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M42_SJ.out.tab [2026-08-14 11:51:07,306] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M42_SJ.out.tab [2026-08-14 11:51:07,306] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M42_SJ.out.tab [2026-08-14 11:51:07,307] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M42_SJ.out.tab [2026-08-14 11:51:09,665] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M42_marked_dup_metrics.txt [2026-08-14 11:51:09,669] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M42_marked_dup_metrics.txt [2026-08-14 11:51:09,669] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M42_marked_dup_metrics.txt [2026-08-14 11:51:09,669] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M42_marked_dup_metrics.txt [2026-08-14 11:51:09,675] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M42_marked_dup_metrics.txt [2026-08-14 11:51:09,691] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M42_hist.pdf [2026-08-14 11:51:09,711] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M42_metrics [2026-08-14 11:51:09,716] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M42_metrics [2026-08-14 11:51:09,716] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M42_metrics [2026-08-14 11:51:09,717] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M42_metrics [2026-08-14 11:51:09,722] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M42_metrics [2026-08-14 11:51:09,829] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:09,833] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:09,834] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:09,834] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:09,841] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:09,841] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:09,841] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:09,841] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:09,841] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:09,841] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:09,841] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:09,842] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:09,868] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:10,803] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:10,807] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:10,808] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:10,808] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:10,814] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:10,814] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:10,814] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:10,814] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:10,814] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:10,814] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:10,814] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:10,814] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:10,834] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M42_featureCounts.out [2026-08-14 11:51:11,760] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M42_metrics [2026-08-14 11:51:11,762] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M42_metrics [2026-08-14 11:51:11,767] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M42_metrics [2026-08-14 11:51:11,818] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M34-ERalpha-fl-fl_R2_001.fastq.gz [2026-08-14 11:51:11,821] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M34-ERalpha-fl-fl_R1_001.fastq.gz [2026-08-14 11:51:11,938] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M34_SJ.out.tab [2026-08-14 11:51:11,942] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M34_SJ.out.tab [2026-08-14 11:51:11,942] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M34_SJ.out.tab [2026-08-14 11:51:11,943] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M34_SJ.out.tab [2026-08-14 11:51:11,948] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M34_SJ.out.tab [2026-08-14 11:51:11,948] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M34_SJ.out.tab [2026-08-14 11:51:11,948] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M34_SJ.out.tab [2026-08-14 11:51:11,948] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M34_SJ.out.tab [2026-08-14 11:51:11,948] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M34_SJ.out.tab [2026-08-14 11:51:11,948] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M34_SJ.out.tab [2026-08-14 11:51:11,948] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M34_SJ.out.tab [2026-08-14 11:51:11,948] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M34_SJ.out.tab [2026-08-14 11:51:11,949] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M34_SJ.out.tab [2026-08-14 11:51:11,949] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M34_SJ.out.tab [2026-08-14 11:51:14,160] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M34_marked_dup_metrics.txt [2026-08-14 11:51:14,165] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M34_marked_dup_metrics.txt [2026-08-14 11:51:14,165] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M34_marked_dup_metrics.txt [2026-08-14 11:51:14,165] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M34_marked_dup_metrics.txt [2026-08-14 11:51:14,174] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M34_marked_dup_metrics.txt [2026-08-14 11:51:14,196] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M34_hist.pdf [2026-08-14 11:51:14,219] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M34_metrics [2026-08-14 11:51:14,222] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M34_metrics [2026-08-14 11:51:14,223] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M34_metrics [2026-08-14 11:51:14,223] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M34_metrics [2026-08-14 11:51:14,228] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M34_metrics [2026-08-14 11:51:14,320] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:14,325] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:14,325] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:14,325] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:14,331] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:14,331] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:14,331] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:14,331] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:14,331] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:14,331] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:14,331] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:14,331] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:14,351] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:15,317] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:15,321] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:15,321] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:15,322] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:15,329] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:15,329] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:15,329] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:15,329] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:15,329] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:15,329] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:15,329] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:15,329] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:15,349] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M34_featureCounts.out [2026-08-14 11:51:16,284] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M34_metrics [2026-08-14 11:51:16,288] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M34_metrics [2026-08-14 11:51:16,293] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M34_metrics [2026-08-14 11:51:16,347] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M56-GHR-ERa-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:51:16,349] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M56-GHR-ERa-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:51:16,422] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M56_SJ.out.tab [2026-08-14 11:51:16,426] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M56_SJ.out.tab [2026-08-14 11:51:16,426] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M56_SJ.out.tab [2026-08-14 11:51:16,426] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M56_SJ.out.tab [2026-08-14 11:51:16,431] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M56_SJ.out.tab [2026-08-14 11:51:16,431] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M56_SJ.out.tab [2026-08-14 11:51:16,431] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M56_SJ.out.tab [2026-08-14 11:51:16,431] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M56_SJ.out.tab [2026-08-14 11:51:16,431] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M56_SJ.out.tab [2026-08-14 11:51:16,431] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M56_SJ.out.tab [2026-08-14 11:51:16,431] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M56_SJ.out.tab [2026-08-14 11:51:16,432] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M56_SJ.out.tab [2026-08-14 11:51:16,432] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M56_SJ.out.tab [2026-08-14 11:51:16,432] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M56_SJ.out.tab [2026-08-14 11:51:18,500] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M56_marked_dup_metrics.txt [2026-08-14 11:51:18,504] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M56_marked_dup_metrics.txt [2026-08-14 11:51:18,505] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M56_marked_dup_metrics.txt [2026-08-14 11:51:18,505] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M56_marked_dup_metrics.txt [2026-08-14 11:51:18,511] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M56_marked_dup_metrics.txt [2026-08-14 11:51:18,544] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M56_metrics [2026-08-14 11:51:18,547] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M56_metrics [2026-08-14 11:51:18,548] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M56_metrics [2026-08-14 11:51:18,548] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M56_metrics [2026-08-14 11:51:18,554] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M56_metrics [2026-08-14 11:51:18,614] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M56_hist.pdf [2026-08-14 11:51:18,673] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:18,676] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:18,677] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:18,677] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:18,685] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:18,685] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:18,685] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:18,685] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:18,685] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:18,685] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:18,685] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:18,685] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:18,708] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:19,663] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:19,667] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:19,668] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:19,668] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:19,677] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:19,677] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:19,677] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:19,677] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:19,677] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:19,677] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:19,677] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:19,677] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:19,700] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M56_featureCounts.out [2026-08-14 11:51:20,608] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M56_metrics [2026-08-14 11:51:20,611] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M56_metrics [2026-08-14 11:51:20,616] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M56_metrics [2026-08-14 11:51:20,669] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M48-GHR-ERa-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:51:20,672] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M48-GHR-ERa-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:51:20,847] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M48_SJ.out.tab [2026-08-14 11:51:20,851] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M48_SJ.out.tab [2026-08-14 11:51:20,852] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M48_SJ.out.tab [2026-08-14 11:51:20,852] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M48_SJ.out.tab [2026-08-14 11:51:20,858] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M48_SJ.out.tab [2026-08-14 11:51:20,858] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M48_SJ.out.tab [2026-08-14 11:51:20,859] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M48_SJ.out.tab [2026-08-14 11:51:20,859] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M48_SJ.out.tab [2026-08-14 11:51:20,859] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M48_SJ.out.tab [2026-08-14 11:51:20,859] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M48_SJ.out.tab [2026-08-14 11:51:20,859] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M48_SJ.out.tab [2026-08-14 11:51:20,859] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M48_SJ.out.tab [2026-08-14 11:51:20,859] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M48_SJ.out.tab [2026-08-14 11:51:20,859] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M48_SJ.out.tab [2026-08-14 11:51:23,036] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M48_marked_dup_metrics.txt [2026-08-14 11:51:23,038] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M48_marked_dup_metrics.txt [2026-08-14 11:51:23,054] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M48_marked_dup_metrics.txt [2026-08-14 11:51:23,054] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M48_marked_dup_metrics.txt [2026-08-14 11:51:23,060] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M48_marked_dup_metrics.txt [2026-08-14 11:51:23,118] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M48_metrics [2026-08-14 11:51:23,122] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M48_metrics [2026-08-14 11:51:23,123] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M48_metrics [2026-08-14 11:51:23,123] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M48_metrics [2026-08-14 11:51:23,130] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M48_metrics [2026-08-14 11:51:23,195] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M48_hist.pdf [2026-08-14 11:51:23,255] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:23,259] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:23,259] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:23,259] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:23,265] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:23,265] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:23,265] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:23,265] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:23,265] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:23,265] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:23,265] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:23,265] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:23,285] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:24,238] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:24,241] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:24,241] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:24,241] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:24,246] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:24,246] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:24,246] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:24,246] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:24,246] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:24,247] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:24,247] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:24,247] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:24,266] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M48_featureCounts.out [2026-08-14 11:51:25,189] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M48_metrics [2026-08-14 11:51:25,193] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M48_metrics [2026-08-14 11:51:25,201] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M48_metrics [2026-08-14 11:51:25,259] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M41-GHR-ERa-fl-fl_R2_001.fastq.gz [2026-08-14 11:51:25,262] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M41-GHR-ERa-fl-fl_R1_001.fastq.gz [2026-08-14 11:51:25,429] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M41_SJ.out.tab [2026-08-14 11:51:25,432] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M41_SJ.out.tab [2026-08-14 11:51:25,432] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M41_SJ.out.tab [2026-08-14 11:51:25,433] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M41_SJ.out.tab [2026-08-14 11:51:25,438] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M41_SJ.out.tab [2026-08-14 11:51:25,438] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M41_SJ.out.tab [2026-08-14 11:51:25,438] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M41_SJ.out.tab [2026-08-14 11:51:25,438] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M41_SJ.out.tab [2026-08-14 11:51:25,438] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M41_SJ.out.tab [2026-08-14 11:51:25,438] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M41_SJ.out.tab [2026-08-14 11:51:25,438] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M41_SJ.out.tab [2026-08-14 11:51:25,438] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M41_SJ.out.tab [2026-08-14 11:51:25,438] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M41_SJ.out.tab [2026-08-14 11:51:25,438] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M41_SJ.out.tab [2026-08-14 11:51:27,623] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M41_marked_dup_metrics.txt [2026-08-14 11:51:27,628] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M41_marked_dup_metrics.txt [2026-08-14 11:51:27,629] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M41_marked_dup_metrics.txt [2026-08-14 11:51:27,629] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M41_marked_dup_metrics.txt [2026-08-14 11:51:27,636] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M41_marked_dup_metrics.txt [2026-08-14 11:51:27,673] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M41_metrics [2026-08-14 11:51:27,676] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M41_metrics [2026-08-14 11:51:27,676] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M41_metrics [2026-08-14 11:51:27,676] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M41_metrics [2026-08-14 11:51:27,682] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M41_metrics [2026-08-14 11:51:27,733] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M41_hist.pdf [2026-08-14 11:51:27,756] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:27,760] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:27,761] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:27,761] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:27,767] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:27,767] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:27,767] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:27,767] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:27,767] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:27,767] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:27,768] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:27,768] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:27,787] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:28,747] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:28,750] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:28,750] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:28,750] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:28,756] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:28,756] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:28,756] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:28,756] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:28,756] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:28,756] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:28,757] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:28,757] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:28,776] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M41_featureCounts.out [2026-08-14 11:51:29,712] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M41_metrics [2026-08-14 11:51:29,716] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M41_metrics [2026-08-14 11:51:29,722] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M41_metrics [2026-08-14 11:51:29,791] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M33-ERalpha-fl-fl_R1_001.fastq.gz [2026-08-14 11:51:29,794] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M33-ERalpha-fl-fl_R2_001.fastq.gz [2026-08-14 11:51:29,954] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M33_SJ.out.tab [2026-08-14 11:51:29,958] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M33_SJ.out.tab [2026-08-14 11:51:29,959] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M33_SJ.out.tab [2026-08-14 11:51:29,959] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M33_SJ.out.tab [2026-08-14 11:51:29,964] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M33_SJ.out.tab [2026-08-14 11:51:29,965] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M33_SJ.out.tab [2026-08-14 11:51:29,965] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M33_SJ.out.tab [2026-08-14 11:51:29,965] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M33_SJ.out.tab [2026-08-14 11:51:29,965] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M33_SJ.out.tab [2026-08-14 11:51:29,965] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M33_SJ.out.tab [2026-08-14 11:51:29,965] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M33_SJ.out.tab [2026-08-14 11:51:29,965] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M33_SJ.out.tab [2026-08-14 11:51:29,965] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M33_SJ.out.tab [2026-08-14 11:51:29,965] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M33_SJ.out.tab [2026-08-14 11:51:32,213] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M33_marked_dup_metrics.txt [2026-08-14 11:51:32,217] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M33_marked_dup_metrics.txt [2026-08-14 11:51:32,218] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M33_marked_dup_metrics.txt [2026-08-14 11:51:32,218] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M33_marked_dup_metrics.txt [2026-08-14 11:51:32,225] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M33_marked_dup_metrics.txt [2026-08-14 11:51:32,245] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M33_hist.pdf [2026-08-14 11:51:32,262] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M33_metrics [2026-08-14 11:51:32,266] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M33_metrics [2026-08-14 11:51:32,266] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M33_metrics [2026-08-14 11:51:32,266] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M33_metrics [2026-08-14 11:51:32,273] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M33_metrics [2026-08-14 11:51:32,393] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:32,397] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:32,398] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:32,398] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:32,405] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:32,405] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:32,405] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:32,405] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:32,405] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:32,405] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:32,405] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:32,405] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:32,425] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:33,365] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:33,369] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:33,370] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:33,370] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:33,376] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:33,376] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:33,377] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:33,377] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:33,377] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:33,377] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:33,377] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:33,377] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:33,396] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M33_featureCounts.out [2026-08-14 11:51:34,301] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M33_metrics [2026-08-14 11:51:34,304] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M33_metrics [2026-08-14 11:51:34,309] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M33_metrics [2026-08-14 11:51:34,358] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M47-GHR-ERa-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:51:34,361] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M47-GHR-ERa-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:51:34,510] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M47_SJ.out.tab [2026-08-14 11:51:34,514] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M47_SJ.out.tab [2026-08-14 11:51:34,514] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M47_SJ.out.tab [2026-08-14 11:51:34,514] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M47_SJ.out.tab [2026-08-14 11:51:34,520] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M47_SJ.out.tab [2026-08-14 11:51:34,520] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M47_SJ.out.tab [2026-08-14 11:51:34,520] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M47_SJ.out.tab [2026-08-14 11:51:34,520] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M47_SJ.out.tab [2026-08-14 11:51:34,521] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M47_SJ.out.tab [2026-08-14 11:51:34,521] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M47_SJ.out.tab [2026-08-14 11:51:34,521] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M47_SJ.out.tab [2026-08-14 11:51:34,521] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M47_SJ.out.tab [2026-08-14 11:51:34,521] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M47_SJ.out.tab [2026-08-14 11:51:34,521] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M47_SJ.out.tab [2026-08-14 11:51:36,676] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M47_marked_dup_metrics.txt [2026-08-14 11:51:36,680] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M47_marked_dup_metrics.txt [2026-08-14 11:51:36,681] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M47_marked_dup_metrics.txt [2026-08-14 11:51:36,681] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M47_marked_dup_metrics.txt [2026-08-14 11:51:36,690] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M47_marked_dup_metrics.txt [2026-08-14 11:51:36,715] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M47_hist.pdf [2026-08-14 11:51:36,744] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M47_metrics [2026-08-14 11:51:36,748] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M47_metrics [2026-08-14 11:51:36,749] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M47_metrics [2026-08-14 11:51:36,749] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M47_metrics [2026-08-14 11:51:36,755] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M47_metrics [2026-08-14 11:51:36,883] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:36,887] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:36,888] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:36,888] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:36,894] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:36,894] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:36,894] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:36,894] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:36,894] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:36,894] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:36,894] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:36,894] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:36,913] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:37,856] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:37,860] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:37,861] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:37,861] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:37,867] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:37,867] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:37,867] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:37,867] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:37,867] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:37,867] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:37,867] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:37,867] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:37,886] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M47_featureCounts.out [2026-08-14 11:51:38,798] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M47_metrics [2026-08-14 11:51:38,801] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M47_metrics [2026-08-14 11:51:38,806] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M47_metrics [2026-08-14 11:51:38,865] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M32-ERalpha-fl-fl_R1_001.fastq.gz [2026-08-14 11:51:38,868] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M32-ERalpha-fl-fl_R2_001.fastq.gz [2026-08-14 11:51:38,921] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M32_SJ.out.tab [2026-08-14 11:51:38,926] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M32_SJ.out.tab [2026-08-14 11:51:38,926] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M32_SJ.out.tab [2026-08-14 11:51:38,926] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M32_SJ.out.tab [2026-08-14 11:51:38,933] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M32_SJ.out.tab [2026-08-14 11:51:38,933] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M32_SJ.out.tab [2026-08-14 11:51:38,933] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M32_SJ.out.tab [2026-08-14 11:51:38,933] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M32_SJ.out.tab [2026-08-14 11:51:38,933] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M32_SJ.out.tab [2026-08-14 11:51:38,933] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M32_SJ.out.tab [2026-08-14 11:51:38,933] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M32_SJ.out.tab [2026-08-14 11:51:38,933] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M32_SJ.out.tab [2026-08-14 11:51:38,933] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M32_SJ.out.tab [2026-08-14 11:51:38,933] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M32_SJ.out.tab [2026-08-14 11:51:41,250] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M32_marked_dup_metrics.txt [2026-08-14 11:51:41,254] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M32_marked_dup_metrics.txt [2026-08-14 11:51:41,255] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M32_marked_dup_metrics.txt [2026-08-14 11:51:41,255] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M32_marked_dup_metrics.txt [2026-08-14 11:51:41,262] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M32_marked_dup_metrics.txt [2026-08-14 11:51:41,307] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M32_metrics [2026-08-14 11:51:41,312] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M32_metrics [2026-08-14 11:51:41,312] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M32_metrics [2026-08-14 11:51:41,313] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M32_metrics [2026-08-14 11:51:41,319] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M32_metrics [2026-08-14 11:51:41,380] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M32_hist.pdf [2026-08-14 11:51:41,431] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:41,435] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:41,435] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:41,436] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:41,441] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:41,441] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:41,441] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:41,441] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:41,441] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:41,441] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:41,441] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:41,441] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:41,461] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:42,417] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:42,422] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:42,422] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:42,422] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:42,428] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:42,428] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:42,428] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:42,428] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:42,428] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:42,428] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:42,428] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:42,429] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:42,448] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M32_featureCounts.out [2026-08-14 11:51:43,355] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M32_metrics [2026-08-14 11:51:43,359] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M32_metrics [2026-08-14 11:51:43,364] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M32_metrics [2026-08-14 11:51:43,422] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M46-GHR-ERa-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:51:43,425] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M46-GHR-ERa-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:51:43,485] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M46_SJ.out.tab [2026-08-14 11:51:43,488] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M46_SJ.out.tab [2026-08-14 11:51:43,489] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M46_SJ.out.tab [2026-08-14 11:51:43,489] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M46_SJ.out.tab [2026-08-14 11:51:43,495] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M46_SJ.out.tab [2026-08-14 11:51:43,495] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M46_SJ.out.tab [2026-08-14 11:51:43,495] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M46_SJ.out.tab [2026-08-14 11:51:43,495] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M46_SJ.out.tab [2026-08-14 11:51:43,495] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M46_SJ.out.tab [2026-08-14 11:51:43,495] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M46_SJ.out.tab [2026-08-14 11:51:43,495] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M46_SJ.out.tab [2026-08-14 11:51:43,495] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M46_SJ.out.tab [2026-08-14 11:51:43,495] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M46_SJ.out.tab [2026-08-14 11:51:43,495] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M46_SJ.out.tab [2026-08-14 11:51:45,793] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M46_marked_dup_metrics.txt [2026-08-14 11:51:45,798] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M46_marked_dup_metrics.txt [2026-08-14 11:51:45,799] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M46_marked_dup_metrics.txt [2026-08-14 11:51:45,799] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M46_marked_dup_metrics.txt [2026-08-14 11:51:45,806] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M46_marked_dup_metrics.txt [2026-08-14 11:51:45,846] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M46_metrics [2026-08-14 11:51:45,851] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M46_metrics [2026-08-14 11:51:45,851] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M46_metrics [2026-08-14 11:51:45,851] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M46_metrics [2026-08-14 11:51:45,859] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M46_metrics [2026-08-14 11:51:45,926] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M46_hist.pdf [2026-08-14 11:51:45,984] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:45,988] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:45,989] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:45,989] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:45,996] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:45,996] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:45,996] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:45,996] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:45,996] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:45,996] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:45,996] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:45,996] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:46,016] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:46,948] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:46,951] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:46,952] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:46,952] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:46,956] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:46,956] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:46,956] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:46,956] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:46,956] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:46,956] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:46,956] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:46,956] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:46,974] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M46_featureCounts.out [2026-08-14 11:51:47,865] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M46_metrics [2026-08-14 11:51:47,868] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M46_metrics [2026-08-14 11:51:47,873] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M46_metrics [2026-08-14 11:51:47,935] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M38-ERalpha-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:51:47,938] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M38-ERalpha-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:51:48,041] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M38_SJ.out.tab [2026-08-14 11:51:48,045] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M38_SJ.out.tab [2026-08-14 11:51:48,045] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M38_SJ.out.tab [2026-08-14 11:51:48,045] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M38_SJ.out.tab [2026-08-14 11:51:48,052] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M38_SJ.out.tab [2026-08-14 11:51:48,052] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M38_SJ.out.tab [2026-08-14 11:51:48,052] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M38_SJ.out.tab [2026-08-14 11:51:48,052] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M38_SJ.out.tab [2026-08-14 11:51:48,052] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M38_SJ.out.tab [2026-08-14 11:51:48,052] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M38_SJ.out.tab [2026-08-14 11:51:48,052] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M38_SJ.out.tab [2026-08-14 11:51:48,052] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M38_SJ.out.tab [2026-08-14 11:51:48,052] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M38_SJ.out.tab [2026-08-14 11:51:48,052] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M38_SJ.out.tab [2026-08-14 11:51:50,190] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M38_marked_dup_metrics.txt [2026-08-14 11:51:50,195] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M38_marked_dup_metrics.txt [2026-08-14 11:51:50,196] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M38_marked_dup_metrics.txt [2026-08-14 11:51:50,196] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M38_marked_dup_metrics.txt [2026-08-14 11:51:50,202] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M38_marked_dup_metrics.txt [2026-08-14 11:51:50,247] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M38_metrics [2026-08-14 11:51:50,252] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M38_metrics [2026-08-14 11:51:50,252] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M38_metrics [2026-08-14 11:51:50,252] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M38_metrics [2026-08-14 11:51:50,260] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M38_metrics [2026-08-14 11:51:50,305] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M38_hist.pdf [2026-08-14 11:51:50,356] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:50,360] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:50,360] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:50,360] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:50,366] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:50,367] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:50,367] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:50,367] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:50,367] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:50,367] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:50,367] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:50,367] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:50,386] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:51,321] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:51,326] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:51,326] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:51,326] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:51,333] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:51,333] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:51,333] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:51,333] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:51,333] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:51,333] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:51,333] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:51,333] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:51,352] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M38_featureCounts.out [2026-08-14 11:51:52,239] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M38_metrics [2026-08-14 11:51:52,242] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M38_metrics [2026-08-14 11:51:52,247] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M38_metrics [2026-08-14 11:51:52,303] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M31-ERalpha-fl-fl_R1_001.fastq.gz [2026-08-14 11:51:52,306] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M31-ERalpha-fl-fl_R2_001.fastq.gz [2026-08-14 11:51:52,420] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M31_SJ.out.tab [2026-08-14 11:51:52,424] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M31_SJ.out.tab [2026-08-14 11:51:52,425] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M31_SJ.out.tab [2026-08-14 11:51:52,425] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M31_SJ.out.tab [2026-08-14 11:51:52,431] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M31_SJ.out.tab [2026-08-14 11:51:52,431] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M31_SJ.out.tab [2026-08-14 11:51:52,431] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M31_SJ.out.tab [2026-08-14 11:51:52,431] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M31_SJ.out.tab [2026-08-14 11:51:52,431] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M31_SJ.out.tab [2026-08-14 11:51:52,431] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M31_SJ.out.tab [2026-08-14 11:51:52,431] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M31_SJ.out.tab [2026-08-14 11:51:52,432] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M31_SJ.out.tab [2026-08-14 11:51:52,432] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M31_SJ.out.tab [2026-08-14 11:51:52,432] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M31_SJ.out.tab [2026-08-14 11:51:54,617] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M31_marked_dup_metrics.txt [2026-08-14 11:51:54,620] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M31_marked_dup_metrics.txt [2026-08-14 11:51:54,620] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M31_marked_dup_metrics.txt [2026-08-14 11:51:54,621] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M31_marked_dup_metrics.txt [2026-08-14 11:51:54,625] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M31_marked_dup_metrics.txt [2026-08-14 11:51:54,668] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M31_metrics [2026-08-14 11:51:54,672] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M31_metrics [2026-08-14 11:51:54,672] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M31_metrics [2026-08-14 11:51:54,672] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M31_metrics [2026-08-14 11:51:54,679] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M31_metrics [2026-08-14 11:51:54,736] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M31_hist.pdf [2026-08-14 11:51:54,788] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:54,793] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:54,793] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:54,793] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:54,798] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:54,798] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:54,798] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:54,798] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:54,798] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:54,798] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:54,798] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:54,799] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:54,818] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:55,752] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:55,756] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:55,756] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:55,756] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:55,763] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:55,763] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:55,763] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:55,763] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:55,763] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:55,763] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:55,763] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:55,763] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:55,783] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M31_featureCounts.out [2026-08-14 11:51:56,702] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M31_metrics [2026-08-14 11:51:56,705] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M31_metrics [2026-08-14 11:51:56,710] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M31_metrics [2026-08-14 11:51:56,756] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M23-GHR-fl-fl_R1_001.fastq.gz [2026-08-14 11:51:56,759] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M23-GHR-fl-fl_R2_001.fastq.gz [2026-08-14 11:51:56,922] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M23_SJ.out.tab [2026-08-14 11:51:56,927] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M23_SJ.out.tab [2026-08-14 11:51:56,927] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M23_SJ.out.tab [2026-08-14 11:51:56,927] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M23_SJ.out.tab [2026-08-14 11:51:56,933] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M23_SJ.out.tab [2026-08-14 11:51:56,933] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M23_SJ.out.tab [2026-08-14 11:51:56,933] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M23_SJ.out.tab [2026-08-14 11:51:56,933] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M23_SJ.out.tab [2026-08-14 11:51:56,933] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M23_SJ.out.tab [2026-08-14 11:51:56,933] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M23_SJ.out.tab [2026-08-14 11:51:56,933] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M23_SJ.out.tab [2026-08-14 11:51:56,933] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M23_SJ.out.tab [2026-08-14 11:51:56,933] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M23_SJ.out.tab [2026-08-14 11:51:56,933] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M23_SJ.out.tab [2026-08-14 11:51:58,977] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M23_marked_dup_metrics.txt [2026-08-14 11:51:58,980] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M23_marked_dup_metrics.txt [2026-08-14 11:51:58,981] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M23_marked_dup_metrics.txt [2026-08-14 11:51:58,981] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M23_marked_dup_metrics.txt [2026-08-14 11:51:58,989] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M23_marked_dup_metrics.txt [2026-08-14 11:51:59,040] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M23_metrics [2026-08-14 11:51:59,044] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M23_metrics [2026-08-14 11:51:59,045] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M23_metrics [2026-08-14 11:51:59,045] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M23_metrics [2026-08-14 11:51:59,052] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M23_metrics [2026-08-14 11:51:59,126] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M23_hist.pdf [2026-08-14 11:51:59,150] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:51:59,155] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:51:59,155] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:51:59,156] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:51:59,163] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:51:59,163] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:51:59,163] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:51:59,163] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:51:59,164] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:51:59,164] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:51:59,164] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:51:59,164] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:51:59,186] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:52:00,116] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:52:00,120] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:52:00,120] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:52:00,120] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:52:00,126] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:52:00,127] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:52:00,127] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:52:00,127] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:52:00,127] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:52:00,127] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:52:00,127] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:52:00,127] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:52:00,145] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M23_featureCounts.out [2026-08-14 11:52:01,061] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M23_metrics [2026-08-14 11:52:01,066] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M23_metrics [2026-08-14 11:52:01,071] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M23_metrics [2026-08-14 11:52:01,124] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M45-GHR-ERa-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:52:01,127] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M45-GHR-ERa-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:52:01,296] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M45_SJ.out.tab [2026-08-14 11:52:01,300] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M45_SJ.out.tab [2026-08-14 11:52:01,301] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M45_SJ.out.tab [2026-08-14 11:52:01,301] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M45_SJ.out.tab [2026-08-14 11:52:01,306] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M45_SJ.out.tab [2026-08-14 11:52:01,306] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M45_SJ.out.tab [2026-08-14 11:52:01,306] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M45_SJ.out.tab [2026-08-14 11:52:01,306] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M45_SJ.out.tab [2026-08-14 11:52:01,306] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M45_SJ.out.tab [2026-08-14 11:52:01,306] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M45_SJ.out.tab [2026-08-14 11:52:01,306] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M45_SJ.out.tab [2026-08-14 11:52:01,306] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M45_SJ.out.tab [2026-08-14 11:52:01,306] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M45_SJ.out.tab [2026-08-14 11:52:01,306] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M45_SJ.out.tab [2026-08-14 11:52:03,530] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M45_marked_dup_metrics.txt [2026-08-14 11:52:03,534] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M45_marked_dup_metrics.txt [2026-08-14 11:52:03,535] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M45_marked_dup_metrics.txt [2026-08-14 11:52:03,535] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M45_marked_dup_metrics.txt [2026-08-14 11:52:03,540] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M45_marked_dup_metrics.txt [2026-08-14 11:52:03,558] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M45_hist.pdf [2026-08-14 11:52:03,578] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M45_metrics [2026-08-14 11:52:03,583] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M45_metrics [2026-08-14 11:52:03,583] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M45_metrics [2026-08-14 11:52:03,583] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M45_metrics [2026-08-14 11:52:03,589] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M45_metrics [2026-08-14 11:52:03,686] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:03,691] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:03,691] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:03,691] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:03,698] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:03,698] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:03,698] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:03,698] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:03,698] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:03,698] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:03,698] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:03,698] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:03,718] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:04,644] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:04,648] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:04,649] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:04,649] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:04,655] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:04,655] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:04,656] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:04,656] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:04,656] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:04,656] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:04,656] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:04,656] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:04,674] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M45_featureCounts.out [2026-08-14 11:52:05,565] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M45_metrics [2026-08-14 11:52:05,568] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M45_metrics [2026-08-14 11:52:05,573] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M45_metrics [2026-08-14 11:52:05,619] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M37-ERalpha-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:52:05,622] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M37-ERalpha-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:52:05,659] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M37_SJ.out.tab [2026-08-14 11:52:05,663] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M37_SJ.out.tab [2026-08-14 11:52:05,664] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M37_SJ.out.tab [2026-08-14 11:52:05,664] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M37_SJ.out.tab [2026-08-14 11:52:05,670] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M37_SJ.out.tab [2026-08-14 11:52:05,670] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M37_SJ.out.tab [2026-08-14 11:52:05,670] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M37_SJ.out.tab [2026-08-14 11:52:05,670] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M37_SJ.out.tab [2026-08-14 11:52:05,670] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M37_SJ.out.tab [2026-08-14 11:52:05,670] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M37_SJ.out.tab [2026-08-14 11:52:05,670] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M37_SJ.out.tab [2026-08-14 11:52:05,670] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M37_SJ.out.tab [2026-08-14 11:52:05,670] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M37_SJ.out.tab [2026-08-14 11:52:05,670] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M37_SJ.out.tab [2026-08-14 11:52:07,732] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M37_marked_dup_metrics.txt [2026-08-14 11:52:07,737] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M37_marked_dup_metrics.txt [2026-08-14 11:52:07,738] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M37_marked_dup_metrics.txt [2026-08-14 11:52:07,738] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M37_marked_dup_metrics.txt [2026-08-14 11:52:07,744] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M37_marked_dup_metrics.txt [2026-08-14 11:52:07,793] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M37_metrics [2026-08-14 11:52:07,797] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M37_metrics [2026-08-14 11:52:07,798] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M37_metrics [2026-08-14 11:52:07,798] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M37_metrics [2026-08-14 11:52:07,803] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M37_metrics [2026-08-14 11:52:07,857] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M37_hist.pdf [2026-08-14 11:52:07,910] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:07,914] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:07,915] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:07,915] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:07,923] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:07,923] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:07,923] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:07,923] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:07,923] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:07,923] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:07,923] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:07,923] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:07,948] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:08,905] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:08,910] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:08,910] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:08,911] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:08,916] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:08,916] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:08,916] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:08,916] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:08,916] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:08,916] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:08,916] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:08,916] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:08,935] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M37_featureCounts.out [2026-08-14 11:52:09,824] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M37_metrics [2026-08-14 11:52:09,829] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M37_metrics [2026-08-14 11:52:09,835] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M37_metrics [2026-08-14 11:52:09,884] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M30-GHR-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:52:09,887] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M30-GHR-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:52:09,958] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M30_SJ.out.tab [2026-08-14 11:52:09,960] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M30_SJ.out.tab [2026-08-14 11:52:09,960] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M30_SJ.out.tab [2026-08-14 11:52:09,960] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M30_SJ.out.tab [2026-08-14 11:52:09,964] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M30_SJ.out.tab [2026-08-14 11:52:09,964] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M30_SJ.out.tab [2026-08-14 11:52:09,964] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M30_SJ.out.tab [2026-08-14 11:52:09,964] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M30_SJ.out.tab [2026-08-14 11:52:09,965] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M30_SJ.out.tab [2026-08-14 11:52:09,965] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M30_SJ.out.tab [2026-08-14 11:52:09,965] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M30_SJ.out.tab [2026-08-14 11:52:09,965] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M30_SJ.out.tab [2026-08-14 11:52:09,965] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M30_SJ.out.tab [2026-08-14 11:52:09,965] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M30_SJ.out.tab [2026-08-14 11:52:12,041] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M30_marked_dup_metrics.txt [2026-08-14 11:52:12,045] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M30_marked_dup_metrics.txt [2026-08-14 11:52:12,045] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M30_marked_dup_metrics.txt [2026-08-14 11:52:12,045] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M30_marked_dup_metrics.txt [2026-08-14 11:52:12,050] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M30_marked_dup_metrics.txt [2026-08-14 11:52:12,097] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M30_metrics [2026-08-14 11:52:12,100] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M30_metrics [2026-08-14 11:52:12,101] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M30_metrics [2026-08-14 11:52:12,101] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M30_metrics [2026-08-14 11:52:12,109] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M30_metrics [2026-08-14 11:52:12,172] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M30_hist.pdf [2026-08-14 11:52:12,229] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:12,232] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:12,233] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:12,233] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:12,239] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:12,239] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:12,239] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:12,239] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:12,239] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:12,240] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:12,240] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:12,240] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:12,259] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:13,213] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:13,217] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:13,218] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:13,218] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:13,226] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:13,226] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:13,226] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:13,226] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:13,227] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:13,227] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:13,227] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:13,227] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:13,249] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M30_featureCounts.out [2026-08-14 11:52:14,140] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M30_metrics [2026-08-14 11:52:14,142] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M30_metrics [2026-08-14 11:52:14,148] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M30_metrics [2026-08-14 11:52:14,196] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M22-GHR-fl-fl_R1_001.fastq.gz [2026-08-14 11:52:14,199] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M22-GHR-fl-fl_R2_001.fastq.gz [2026-08-14 11:52:14,327] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M22_SJ.out.tab [2026-08-14 11:52:14,331] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M22_SJ.out.tab [2026-08-14 11:52:14,332] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M22_SJ.out.tab [2026-08-14 11:52:14,332] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M22_SJ.out.tab [2026-08-14 11:52:14,340] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M22_SJ.out.tab [2026-08-14 11:52:14,340] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M22_SJ.out.tab [2026-08-14 11:52:14,340] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M22_SJ.out.tab [2026-08-14 11:52:14,340] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M22_SJ.out.tab [2026-08-14 11:52:14,340] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M22_SJ.out.tab [2026-08-14 11:52:14,340] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M22_SJ.out.tab [2026-08-14 11:52:14,340] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M22_SJ.out.tab [2026-08-14 11:52:14,340] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M22_SJ.out.tab [2026-08-14 11:52:14,340] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M22_SJ.out.tab [2026-08-14 11:52:14,340] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M22_SJ.out.tab [2026-08-14 11:52:16,486] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M22_marked_dup_metrics.txt [2026-08-14 11:52:16,489] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M22_marked_dup_metrics.txt [2026-08-14 11:52:16,489] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M22_marked_dup_metrics.txt [2026-08-14 11:52:16,489] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M22_marked_dup_metrics.txt [2026-08-14 11:52:16,495] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M22_marked_dup_metrics.txt [2026-08-14 11:52:16,513] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M22_hist.pdf [2026-08-14 11:52:16,534] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M22_metrics [2026-08-14 11:52:16,538] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M22_metrics [2026-08-14 11:52:16,538] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M22_metrics [2026-08-14 11:52:16,538] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M22_metrics [2026-08-14 11:52:16,545] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M22_metrics [2026-08-14 11:52:16,668] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:16,673] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:16,674] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:16,674] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:16,682] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:16,682] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:16,682] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:16,682] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:16,682] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:16,682] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:16,682] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:16,682] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:16,706] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:17,636] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:17,639] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:17,640] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:17,640] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:17,646] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:17,646] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:17,646] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:17,646] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:17,646] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:17,647] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:17,647] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:17,647] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:17,671] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M22_featureCounts.out [2026-08-14 11:52:18,547] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M22_metrics [2026-08-14 11:52:18,550] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M22_metrics [2026-08-14 11:52:18,554] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M22_metrics [2026-08-14 11:52:18,600] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M36-ERalpha-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:52:18,602] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M36-ERalpha-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:52:18,729] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M36_SJ.out.tab [2026-08-14 11:52:18,733] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M36_SJ.out.tab [2026-08-14 11:52:18,733] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M36_SJ.out.tab [2026-08-14 11:52:18,733] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M36_SJ.out.tab [2026-08-14 11:52:18,739] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M36_SJ.out.tab [2026-08-14 11:52:18,739] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M36_SJ.out.tab [2026-08-14 11:52:18,739] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M36_SJ.out.tab [2026-08-14 11:52:18,739] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M36_SJ.out.tab [2026-08-14 11:52:18,739] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M36_SJ.out.tab [2026-08-14 11:52:18,739] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M36_SJ.out.tab [2026-08-14 11:52:18,739] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M36_SJ.out.tab [2026-08-14 11:52:18,739] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M36_SJ.out.tab [2026-08-14 11:52:18,739] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M36_SJ.out.tab [2026-08-14 11:52:18,740] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M36_SJ.out.tab [2026-08-14 11:52:20,811] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M36_marked_dup_metrics.txt [2026-08-14 11:52:20,816] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M36_marked_dup_metrics.txt [2026-08-14 11:52:20,817] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M36_marked_dup_metrics.txt [2026-08-14 11:52:20,817] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M36_marked_dup_metrics.txt [2026-08-14 11:52:20,824] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M36_marked_dup_metrics.txt [2026-08-14 11:52:20,862] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M36_metrics [2026-08-14 11:52:20,866] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M36_metrics [2026-08-14 11:52:20,867] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M36_metrics [2026-08-14 11:52:20,867] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M36_metrics [2026-08-14 11:52:20,874] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M36_metrics [2026-08-14 11:52:20,929] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M36_hist.pdf [2026-08-14 11:52:20,963] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:20,967] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:20,967] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:20,967] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:20,974] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:20,974] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:20,974] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:20,974] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:20,974] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:20,974] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:20,974] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:20,974] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:20,993] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:21,936] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:21,940] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:21,941] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:21,941] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:21,947] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:21,947] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:21,947] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:21,947] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:21,947] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:21,947] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:21,947] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:21,948] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:21,967] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M36_featureCounts.out [2026-08-14 11:52:22,888] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M36_metrics [2026-08-14 11:52:22,892] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M36_metrics [2026-08-14 11:52:22,897] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M36_metrics [2026-08-14 11:52:22,945] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M28-GHR-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:52:22,948] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M28-GHR-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:52:23,105] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M28_SJ.out.tab [2026-08-14 11:52:23,110] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M28_SJ.out.tab [2026-08-14 11:52:23,110] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M28_SJ.out.tab [2026-08-14 11:52:23,110] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M28_SJ.out.tab [2026-08-14 11:52:23,117] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M28_SJ.out.tab [2026-08-14 11:52:23,117] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M28_SJ.out.tab [2026-08-14 11:52:23,117] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M28_SJ.out.tab [2026-08-14 11:52:23,117] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M28_SJ.out.tab [2026-08-14 11:52:23,117] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M28_SJ.out.tab [2026-08-14 11:52:23,117] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M28_SJ.out.tab [2026-08-14 11:52:23,117] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M28_SJ.out.tab [2026-08-14 11:52:23,117] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M28_SJ.out.tab [2026-08-14 11:52:23,117] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M28_SJ.out.tab [2026-08-14 11:52:23,117] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M28_SJ.out.tab [2026-08-14 11:52:25,632] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M28_marked_dup_metrics.txt [2026-08-14 11:52:25,635] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M28_marked_dup_metrics.txt [2026-08-14 11:52:25,636] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M28_marked_dup_metrics.txt [2026-08-14 11:52:25,636] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M28_marked_dup_metrics.txt [2026-08-14 11:52:25,641] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M28_marked_dup_metrics.txt [2026-08-14 11:52:25,681] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M28_metrics [2026-08-14 11:52:25,685] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M28_metrics [2026-08-14 11:52:25,685] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M28_metrics [2026-08-14 11:52:25,685] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M28_metrics [2026-08-14 11:52:25,692] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M28_metrics [2026-08-14 11:52:25,728] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M28_hist.pdf [2026-08-14 11:52:25,781] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:25,785] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:25,786] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:25,786] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:25,792] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:25,792] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:25,792] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:25,792] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:25,792] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:25,792] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:25,792] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:25,792] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:25,811] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:26,746] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:26,751] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:26,751] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:26,751] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:26,757] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:26,757] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:26,757] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:26,758] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:26,758] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:26,758] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:26,758] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:26,758] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:26,778] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M28_featureCounts.out [2026-08-14 11:52:27,662] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M28_metrics [2026-08-14 11:52:27,666] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M28_metrics [2026-08-14 11:52:27,670] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M28_metrics [2026-08-14 11:52:27,727] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M21-GHR-fl-fl_R1_001.fastq.gz [2026-08-14 11:52:27,729] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M21-GHR-fl-fl_R2_001.fastq.gz [2026-08-14 11:52:27,813] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M21_SJ.out.tab [2026-08-14 11:52:27,817] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M21_SJ.out.tab [2026-08-14 11:52:27,818] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M21_SJ.out.tab [2026-08-14 11:52:27,818] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M21_SJ.out.tab [2026-08-14 11:52:27,824] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M21_SJ.out.tab [2026-08-14 11:52:27,824] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M21_SJ.out.tab [2026-08-14 11:52:27,824] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M21_SJ.out.tab [2026-08-14 11:52:27,824] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M21_SJ.out.tab [2026-08-14 11:52:27,824] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M21_SJ.out.tab [2026-08-14 11:52:27,824] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M21_SJ.out.tab [2026-08-14 11:52:27,824] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M21_SJ.out.tab [2026-08-14 11:52:27,824] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M21_SJ.out.tab [2026-08-14 11:52:27,824] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M21_SJ.out.tab [2026-08-14 11:52:27,824] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M21_SJ.out.tab [2026-08-14 11:52:30,088] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M21_marked_dup_metrics.txt [2026-08-14 11:52:30,092] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M21_marked_dup_metrics.txt [2026-08-14 11:52:30,093] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M21_marked_dup_metrics.txt [2026-08-14 11:52:30,093] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M21_marked_dup_metrics.txt [2026-08-14 11:52:30,103] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M21_marked_dup_metrics.txt [2026-08-14 11:52:30,129] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M21_hist.pdf [2026-08-14 11:52:30,150] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M21_metrics [2026-08-14 11:52:30,154] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M21_metrics [2026-08-14 11:52:30,154] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M21_metrics [2026-08-14 11:52:30,154] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M21_metrics [2026-08-14 11:52:30,162] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M21_metrics [2026-08-14 11:52:30,275] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:30,279] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:30,280] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:30,280] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:30,286] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:30,286] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:30,286] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:30,287] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:30,287] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:30,287] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:30,287] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:30,287] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:30,307] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:31,266] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:31,270] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:31,271] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:31,271] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:31,278] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:31,278] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:31,278] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:31,278] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:31,278] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:31,278] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:31,278] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:31,278] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:31,298] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M21_featureCounts.out [2026-08-14 11:52:32,203] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M21_metrics [2026-08-14 11:52:32,207] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M21_metrics [2026-08-14 11:52:32,213] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M21_metrics [2026-08-14 11:52:32,272] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M13-ERalpha-fl-fl_R1_001.fastq.gz [2026-08-14 11:52:32,275] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M13-ERalpha-fl-fl_R2_001.fastq.gz [2026-08-14 11:52:32,390] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M13_SJ.out.tab [2026-08-14 11:52:32,394] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M13_SJ.out.tab [2026-08-14 11:52:32,395] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M13_SJ.out.tab [2026-08-14 11:52:32,395] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M13_SJ.out.tab [2026-08-14 11:52:32,403] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M13_SJ.out.tab [2026-08-14 11:52:32,403] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M13_SJ.out.tab [2026-08-14 11:52:32,404] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M13_SJ.out.tab [2026-08-14 11:52:32,404] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M13_SJ.out.tab [2026-08-14 11:52:32,404] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M13_SJ.out.tab [2026-08-14 11:52:32,404] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M13_SJ.out.tab [2026-08-14 11:52:32,404] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M13_SJ.out.tab [2026-08-14 11:52:32,404] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M13_SJ.out.tab [2026-08-14 11:52:32,404] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M13_SJ.out.tab [2026-08-14 11:52:32,404] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M13_SJ.out.tab [2026-08-14 11:52:34,576] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M13_marked_dup_metrics.txt [2026-08-14 11:52:34,581] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M13_marked_dup_metrics.txt [2026-08-14 11:52:34,581] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M13_marked_dup_metrics.txt [2026-08-14 11:52:34,582] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M13_marked_dup_metrics.txt [2026-08-14 11:52:34,588] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M13_marked_dup_metrics.txt [2026-08-14 11:52:34,621] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M13_metrics [2026-08-14 11:52:34,624] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M13_metrics [2026-08-14 11:52:34,624] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M13_metrics [2026-08-14 11:52:34,624] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M13_metrics [2026-08-14 11:52:34,629] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M13_metrics [2026-08-14 11:52:34,697] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M13_hist.pdf [2026-08-14 11:52:34,730] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:34,735] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:34,735] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:34,735] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:34,742] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:34,742] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:34,742] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:34,742] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:34,742] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:34,742] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:34,742] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:34,742] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:34,761] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:35,685] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:35,688] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:35,689] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:35,689] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:35,695] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:35,695] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:35,695] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:35,695] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:35,695] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:35,695] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:35,695] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:35,695] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:35,714] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M13_featureCounts.out [2026-08-14 11:52:36,647] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M13_metrics [2026-08-14 11:52:36,651] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M13_metrics [2026-08-14 11:52:36,657] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M13_metrics [2026-08-14 11:52:36,713] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M35-ERalpha-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:52:36,716] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M35-ERalpha-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:52:36,771] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M35_SJ.out.tab [2026-08-14 11:52:36,776] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M35_SJ.out.tab [2026-08-14 11:52:36,776] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M35_SJ.out.tab [2026-08-14 11:52:36,776] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M35_SJ.out.tab [2026-08-14 11:52:36,782] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M35_SJ.out.tab [2026-08-14 11:52:36,782] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M35_SJ.out.tab [2026-08-14 11:52:36,782] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M35_SJ.out.tab [2026-08-14 11:52:36,782] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M35_SJ.out.tab [2026-08-14 11:52:36,782] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M35_SJ.out.tab [2026-08-14 11:52:36,782] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M35_SJ.out.tab [2026-08-14 11:52:36,783] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M35_SJ.out.tab [2026-08-14 11:52:36,783] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M35_SJ.out.tab [2026-08-14 11:52:36,783] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M35_SJ.out.tab [2026-08-14 11:52:36,783] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M35_SJ.out.tab [2026-08-14 11:52:38,913] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M35_marked_dup_metrics.txt [2026-08-14 11:52:38,917] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M35_marked_dup_metrics.txt [2026-08-14 11:52:38,918] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M35_marked_dup_metrics.txt [2026-08-14 11:52:38,918] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M35_marked_dup_metrics.txt [2026-08-14 11:52:38,925] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M35_marked_dup_metrics.txt [2026-08-14 11:52:38,946] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M35_hist.pdf [2026-08-14 11:52:39,018] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M35_metrics [2026-08-14 11:52:39,022] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M35_metrics [2026-08-14 11:52:39,023] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M35_metrics [2026-08-14 11:52:39,023] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M35_metrics [2026-08-14 11:52:39,029] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M35_metrics [2026-08-14 11:52:39,166] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:39,171] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:39,171] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:39,172] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:39,179] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:39,179] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:39,179] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:39,179] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:39,179] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:39,179] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:39,179] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:39,179] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:39,199] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:40,126] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:40,130] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:40,131] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:40,131] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:40,137] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:40,137] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:40,137] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:40,137] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:40,137] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:40,137] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:40,138] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:40,138] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:40,158] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M35_featureCounts.out [2026-08-14 11:52:41,051] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M35_metrics [2026-08-14 11:52:41,054] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M35_metrics [2026-08-14 11:52:41,059] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M35_metrics [2026-08-14 11:52:41,118] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M27-GHR-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:52:41,121] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M27-GHR-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:52:41,263] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M27_SJ.out.tab [2026-08-14 11:52:41,268] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M27_SJ.out.tab [2026-08-14 11:52:41,268] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M27_SJ.out.tab [2026-08-14 11:52:41,268] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M27_SJ.out.tab [2026-08-14 11:52:41,274] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M27_SJ.out.tab [2026-08-14 11:52:41,274] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M27_SJ.out.tab [2026-08-14 11:52:41,274] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M27_SJ.out.tab [2026-08-14 11:52:41,274] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M27_SJ.out.tab [2026-08-14 11:52:41,274] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M27_SJ.out.tab [2026-08-14 11:52:41,274] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M27_SJ.out.tab [2026-08-14 11:52:41,274] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M27_SJ.out.tab [2026-08-14 11:52:41,274] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M27_SJ.out.tab [2026-08-14 11:52:41,274] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M27_SJ.out.tab [2026-08-14 11:52:41,274] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M27_SJ.out.tab [2026-08-14 11:52:43,418] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M27_marked_dup_metrics.txt [2026-08-14 11:52:43,421] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M27_marked_dup_metrics.txt [2026-08-14 11:52:43,421] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M27_marked_dup_metrics.txt [2026-08-14 11:52:43,421] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M27_marked_dup_metrics.txt [2026-08-14 11:52:43,427] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M27_marked_dup_metrics.txt [2026-08-14 11:52:43,471] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M27_metrics [2026-08-14 11:52:43,474] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M27_metrics [2026-08-14 11:52:43,474] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M27_metrics [2026-08-14 11:52:43,475] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M27_metrics [2026-08-14 11:52:43,480] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M27_metrics [2026-08-14 11:52:43,524] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262_M27_hist.pdf [2026-08-14 11:52:43,551] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:43,556] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:43,556] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:43,556] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:43,563] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:43,563] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:43,563] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:43,563] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:43,563] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:43,563] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:43,563] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:43,563] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:43,583] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:44,520] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:44,524] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:44,524] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:44,524] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:44,531] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:44,531] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:44,531] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:44,531] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:44,531] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:44,531] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:44,531] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:44,531] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:44,549] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M27_featureCounts.out [2026-08-14 11:52:45,464] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M27_metrics [2026-08-14 11:52:45,468] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M27_metrics [2026-08-14 11:52:45,472] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M27_metrics [2026-08-14 11:52:45,528] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M20-ERalpha-fl-fl-KO_R2_001.fastq.gz [2026-08-14 11:52:45,531] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G262-M20-ERalpha-fl-fl-KO_R1_001.fastq.gz [2026-08-14 11:52:45,668] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M20_SJ.out.tab [2026-08-14 11:52:45,672] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M20_SJ.out.tab [2026-08-14 11:52:45,673] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M20_SJ.out.tab [2026-08-14 11:52:45,673] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M20_SJ.out.tab [2026-08-14 11:52:45,679] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G262_M20_SJ.out.tab [2026-08-14 11:52:45,679] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G262_M20_SJ.out.tab [2026-08-14 11:52:45,679] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M20_SJ.out.tab [2026-08-14 11:52:45,679] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G262_M20_SJ.out.tab [2026-08-14 11:52:45,679] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G262_M20_SJ.out.tab [2026-08-14 11:52:45,679] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G262_M20_SJ.out.tab [2026-08-14 11:52:45,679] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M20_SJ.out.tab [2026-08-14 11:52:45,679] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M20_SJ.out.tab [2026-08-14 11:52:45,679] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G262_M20_SJ.out.tab [2026-08-14 11:52:45,679] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M20_SJ.out.tab [2026-08-14 11:52:47,797] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M20_marked_dup_metrics.txt [2026-08-14 11:52:47,801] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M20_marked_dup_metrics.txt [2026-08-14 11:52:47,802] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M20_marked_dup_metrics.txt [2026-08-14 11:52:47,802] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G262_M20_marked_dup_metrics.txt [2026-08-14 11:52:47,808] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G262_M20_marked_dup_metrics.txt [2026-08-14 11:52:47,847] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M20_metrics [2026-08-14 11:52:47,850] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M20_metrics [2026-08-14 11:52:47,850] multiqc [DEBUG ] File ignored by nanostat 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multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-14 11:52:47,945] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-14 11:52:47,964] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-14 11:52:48,936] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-14 11:52:48,941] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-14 11:52:48,941] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G262_M20_featureCounts.out [2026-08-14 11:52:48,941] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern 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pattern filesize limit: Step_06_G262_RNAseq_G262_M59.o7168346 [2026-08-14 11:53:30,897] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M59.o7168346 [2026-08-14 11:53:30,897] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M59.o7168346 [2026-08-14 11:53:30,904] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M59.o7168346 [2026-08-14 11:53:30,942] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M25.o7168312 [2026-08-14 11:53:30,946] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M25.o7168312 [2026-08-14 11:53:30,946] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 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[2026-08-14 11:53:31,146] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M21.o7168308 [2026-08-14 11:53:31,147] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M21.o7168308 [2026-08-14 11:53:31,147] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M21.o7168308 [2026-08-14 11:53:31,155] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M21.o7168308 [2026-08-14 11:53:31,197] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M56.o7168343 [2026-08-14 11:53:31,200] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M56.o7168343 [2026-08-14 11:53:31,201] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M56.o7168343 [2026-08-14 11:53:31,201] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M56.o7168343 [2026-08-14 11:53:31,206] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M56.o7168343 [2026-08-14 11:53:31,246] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M12.o7168299 [2026-08-14 11:53:31,251] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M12.o7168299 [2026-08-14 11:53:31,251] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M12.o7168299 [2026-08-14 11:53:31,251] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M12.o7168299 [2026-08-14 11:53:31,258] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M12.o7168299 [2026-08-14 11:53:31,306] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M41.o7168328 [2026-08-14 11:53:31,311] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M41.o7168328 [2026-08-14 11:53:31,311] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M41.o7168328 [2026-08-14 11:53:31,311] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M41.o7168328 [2026-08-14 11:53:31,319] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M41.o7168328 [2026-08-14 11:53:31,358] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M51.o7168338 [2026-08-14 11:53:31,363] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M51.o7168338 [2026-08-14 11:53:31,364] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M51.o7168338 [2026-08-14 11:53:31,364] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M51.o7168338 [2026-08-14 11:53:31,370] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M51.o7168338 [2026-08-14 11:53:31,416] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 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[2026-08-14 11:53:31,471] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M19.o7168306 [2026-08-14 11:53:31,471] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M19.o7168306 [2026-08-14 11:53:31,476] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M19.o7168306 [2026-08-14 11:53:31,519] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M53.o7168340 [2026-08-14 11:53:31,523] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M53.o7168340 [2026-08-14 11:53:31,524] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M53.o7168340 [2026-08-14 11:53:31,524] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M53.o7168340 [2026-08-14 11:53:31,530] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M53.o7168340 [2026-08-14 11:53:31,578] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M32.o7168319 [2026-08-14 11:53:31,581] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M32.o7168319 [2026-08-14 11:53:31,581] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M32.o7168319 [2026-08-14 11:53:31,581] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M32.o7168319 [2026-08-14 11:53:31,587] multiqc [DEBUG ] File ignored by 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Step_06_G262_RNAseq_G262_M29.o7168316 [2026-08-14 11:53:31,735] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M29.o7168316 [2026-08-14 11:53:31,735] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M29.o7168316 [2026-08-14 11:53:31,742] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M29.o7168316 [2026-08-14 11:53:31,777] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M09.o7168296 [2026-08-14 11:53:31,781] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M09.o7168296 [2026-08-14 11:53:31,782] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M09.o7168296 [2026-08-14 11:53:31,782] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M09.o7168296 [2026-08-14 11:53:31,790] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M09.o7168296 [2026-08-14 11:53:31,842] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M47.o7168334 [2026-08-14 11:53:31,845] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M47.o7168334 [2026-08-14 11:53:31,846] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M47.o7168334 [2026-08-14 11:53:31,846] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M47.o7168334 [2026-08-14 11:53:31,852] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M47.o7168334 [2026-08-14 11:53:31,886] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M34.o7168321 [2026-08-14 11:53:31,891] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M34.o7168321 [2026-08-14 11:53:31,892] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M34.o7168321 [2026-08-14 11:53:31,892] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M34.o7168321 [2026-08-14 11:53:31,900] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M34.o7168321 [2026-08-14 11:53:31,937] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M28.o7168315 [2026-08-14 11:53:31,940] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M28.o7168315 [2026-08-14 11:53:31,940] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M28.o7168315 [2026-08-14 11:53:31,940] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M28.o7168315 [2026-08-14 11:53:31,948] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M28.o7168315 [2026-08-14 11:53:31,986] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M31.o7168318 [2026-08-14 11:53:31,991] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M31.o7168318 [2026-08-14 11:53:31,992] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M31.o7168318 [2026-08-14 11:53:31,992] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M31.o7168318 [2026-08-14 11:53:32,001] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M31.o7168318 [2026-08-14 11:53:32,047] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M05.o7168292 [2026-08-14 11:53:32,052] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M05.o7168292 [2026-08-14 11:53:32,053] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M05.o7168292 [2026-08-14 11:53:32,053] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M05.o7168292 [2026-08-14 11:53:32,060] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M05.o7168292 [2026-08-14 11:53:32,101] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M02.o7168289 [2026-08-14 11:53:32,106] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M02.o7168289 [2026-08-14 11:53:32,107] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M02.o7168289 [2026-08-14 11:53:32,107] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M02.o7168289 [2026-08-14 11:53:32,115] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M02.o7168289 [2026-08-14 11:53:32,142] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M11.o7168298 [2026-08-14 11:53:32,145] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M11.o7168298 [2026-08-14 11:53:32,145] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M11.o7168298 [2026-08-14 11:53:32,145] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M11.o7168298 [2026-08-14 11:53:32,151] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M11.o7168298 [2026-08-14 11:53:32,193] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M18.o7168305 [2026-08-14 11:53:32,196] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M18.o7168305 [2026-08-14 11:53:32,196] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M18.o7168305 [2026-08-14 11:53:32,196] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M18.o7168305 [2026-08-14 11:53:32,202] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M18.o7168305 [2026-08-14 11:53:32,241] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M10.o7168297 [2026-08-14 11:53:32,244] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M10.o7168297 [2026-08-14 11:53:32,245] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M10.o7168297 [2026-08-14 11:53:32,245] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M10.o7168297 [2026-08-14 11:53:32,251] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G262_RNAseq_G262_M10.o7168297 [2026-08-14 11:53:32,269] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-08-14 11:53:32,272] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-08-14 11:53:32,273] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-08-14 11:53:32,273] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-08-14 11:53:32,279] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-08-14 11:53:32,295] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-08-14 11:53:32,298] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-08-14 11:53:32,298] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-08-14 11:53:32,298] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-08-14 11:53:32,303] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-08-14 11:53:32,316] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2026-08-14 11:53:32,349] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2026-08-14 11:53:32,354] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2026-08-14 11:53:32,354] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2026-08-14 11:53:32,354] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2026-08-14 11:53:32,361] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2026-08-14 11:53:32,361] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2026-08-14 11:53:32,361] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2026-08-14 11:53:32,361] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2026-08-14 11:53:32,361] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2026-08-14 11:53:32,361] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2026-08-14 11:53:32,361] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2026-08-14 11:53:32,361] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2026-08-14 11:53:32,361] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2026-08-14 11:53:32,361] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2026-08-14 11:53:33,195] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-14 11:53:33,199] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-14 11:53:33,199] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-14 11:53:33,199] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-14 11:53:33,205] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-14 11:53:33,250] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-14 11:53:33,253] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-14 11:53:33,254] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-14 11:53:33,254] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-14 11:53:33,259] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-14 11:53:35,973] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2026-08-14 11:53:35,988] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2026-08-14 11:53:35,992] multiqc [DEBUG ] No samples found: custom_content [2026-08-14 11:53:36,021] multiqc [DEBUG ] No samples found: ccs [2026-08-14 11:53:36,040] multiqc [DEBUG ] No samples found: ngsderive [2026-08-14 11:53:36,069] multiqc [DEBUG ] No samples found: purple [2026-08-14 11:53:36,078] multiqc [DEBUG ] No samples found: conpair [2026-08-14 11:53:36,104] multiqc [DEBUG ] No samples found: lima [2026-08-14 11:53:36,123] multiqc [DEBUG ] No samples found: peddy [2026-08-14 11:53:36,144] multiqc [DEBUG ] No samples found: somalier [2026-08-14 11:53:36,163] multiqc [DEBUG ] No samples found: methylQA [2026-08-14 11:53:36,208] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2026-08-14 11:53:36,209] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2026-08-14 11:53:36,209] multiqc [DEBUG ] No samples found: mosdepth [2026-08-14 11:53:36,218] multiqc [DEBUG ] No samples found: phantompeakqualtools [2026-08-14 11:53:36,238] multiqc [DEBUG ] No samples found: qualimap [2026-08-14 11:53:36,259] multiqc [DEBUG ] No samples found: preseq [2026-08-14 11:53:36,277] multiqc [DEBUG ] No samples found: quast [2026-08-14 11:53:36,300] multiqc [DEBUG ] No samples found: qorts [2026-08-14 11:53:36,325] multiqc [DEBUG ] No samples found: rna_seqc [2026-08-14 11:53:36,345] multiqc [DEBUG ] No samples found: rockhopper [2026-08-14 11:53:36,366] multiqc [DEBUG ] No samples found: rsem [2026-08-14 11:53:36,519] multiqc.modules.rseqc.rseqc [INFO ] Found 59 infer_experiment reports [2026-08-14 11:53:36,546] multiqc [DEBUG ] No samples found: busco [2026-08-14 11:53:36,562] multiqc [DEBUG ] No samples found: bustools [2026-08-14 11:53:36,581] multiqc [DEBUG ] No samples found: goleft_indexcov [2026-08-14 11:53:36,591] multiqc [DEBUG ] No samples found: gffcompare [2026-08-14 11:53:36,597] multiqc [DEBUG ] No samples found: disambiguate [2026-08-14 11:53:36,606] multiqc [DEBUG ] No samples found: supernova [2026-08-14 11:53:36,683] multiqc [DEBUG ] No samples found: deeptools [2026-08-14 11:53:36,707] multiqc [DEBUG ] No samples found: sargasso [2026-08-14 11:53:36,717] multiqc [DEBUG ] No samples found: verifybamid [2026-08-14 11:53:36,736] multiqc [DEBUG ] No samples found: mirtrace [2026-08-14 11:53:36,761] multiqc [DEBUG ] No samples found: happy [2026-08-14 11:53:36,794] multiqc [DEBUG ] No samples found: mirtop [2026-08-14 11:53:36,805] multiqc [DEBUG ] No samples found: sambamba [2026-08-14 11:53:36,834] multiqc [DEBUG ] No samples found: homer [2026-08-14 11:53:36,859] multiqc [DEBUG ] No samples found: hops [2026-08-14 11:53:36,880] multiqc [DEBUG ] No samples found: macs2 [2026-08-14 11:53:36,887] multiqc [DEBUG ] No samples found: theta2 [2026-08-14 11:53:36,947] multiqc [DEBUG ] No samples found: snpeff [2026-08-14 11:53:36,985] multiqc [DEBUG ] No samples found: gatk [2026-08-14 11:53:36,996] multiqc [DEBUG ] No samples found: htseq [2026-08-14 11:53:37,012] multiqc [DEBUG ] No samples found: bcftools [2026-08-14 11:53:37,043] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M12_sorted [2026-08-14 11:53:37,046] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M26_sorted [2026-08-14 11:53:37,050] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M11_sorted [2026-08-14 11:53:37,053] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M25_sorted [2026-08-14 11:53:37,056] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M17_sorted [2026-08-14 11:53:37,060] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M10_sorted [2026-08-14 11:53:37,063] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M02_sorted [2026-08-14 11:53:37,066] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M39_sorted [2026-08-14 11:53:37,069] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M24_sorted [2026-08-14 11:53:37,072] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M16_sorted [2026-08-14 11:53:37,076] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M01_sorted [2026-08-14 11:53:37,079] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M51_sorted [2026-08-14 11:53:37,082] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M15_sorted [2026-08-14 11:53:37,086] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M50_sorted [2026-08-14 11:53:37,089] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M29_sorted [2026-08-14 11:53:37,092] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M14_sorted [2026-08-14 11:53:37,096] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M06_sorted [2026-08-14 11:53:37,099] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M05_sorted [2026-08-14 11:53:37,102] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M55_sorted [2026-08-14 11:53:37,109] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M40_sorted [2026-08-14 11:53:37,112] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M19_sorted [2026-08-14 11:53:37,115] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M04_sorted [2026-08-14 11:53:37,118] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M54_sorted [2026-08-14 11:53:37,122] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M18_sorted [2026-08-14 11:53:37,125] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M03_sorted [2026-08-14 11:53:37,129] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M53_sorted [2026-08-14 11:53:37,132] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M09_sorted [2026-08-14 11:53:37,135] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M59_sorted [2026-08-14 11:53:37,139] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M52_sorted [2026-08-14 11:53:37,144] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M44_sorted [2026-08-14 11:53:37,148] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M08_sorted [2026-08-14 11:53:37,151] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M58_sorted [2026-08-14 11:53:37,155] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M43_sorted [2026-08-14 11:53:37,158] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M07_sorted [2026-08-14 11:53:37,162] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M57_sorted [2026-08-14 11:53:37,166] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M49_sorted [2026-08-14 11:53:37,169] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M42_sorted [2026-08-14 11:53:37,172] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M34_sorted [2026-08-14 11:53:37,176] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M56_sorted [2026-08-14 11:53:37,179] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M48_sorted [2026-08-14 11:53:37,182] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M41_sorted [2026-08-14 11:53:37,186] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M33_sorted [2026-08-14 11:53:37,189] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M47_sorted [2026-08-14 11:53:37,192] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M32_sorted [2026-08-14 11:53:37,195] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M46_sorted [2026-08-14 11:53:37,199] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M38_sorted [2026-08-14 11:53:37,202] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M31_sorted [2026-08-14 11:53:37,205] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M23_sorted [2026-08-14 11:53:37,208] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M45_sorted [2026-08-14 11:53:37,211] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M37_sorted [2026-08-14 11:53:37,215] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M30_sorted [2026-08-14 11:53:37,218] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M22_sorted [2026-08-14 11:53:37,221] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M36_sorted [2026-08-14 11:53:37,224] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M28_sorted [2026-08-14 11:53:37,227] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M21_sorted [2026-08-14 11:53:37,231] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M13_sorted [2026-08-14 11:53:37,234] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M35_sorted [2026-08-14 11:53:37,237] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M27_sorted [2026-08-14 11:53:37,241] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G262_M20_sorted [2026-08-14 11:53:37,241] multiqc.modules.featureCounts.feature_counts [INFO ] Found 59 reports [2026-08-14 11:53:37,286] multiqc [DEBUG ] No samples found: fgbio [2026-08-14 11:53:37,379] multiqc [DEBUG ] No samples found: dragen [2026-08-14 11:53:37,400] multiqc [DEBUG ] No samples found: dedup [2026-08-14 11:53:37,422] multiqc [DEBUG ] No samples found: damageprofiler [2026-08-14 11:53:37,626] multiqc [DEBUG ] No samples found: biobambam2 [2026-08-14 11:53:37,653] multiqc [DEBUG ] No samples found: jcvi [2026-08-14 11:53:37,662] multiqc [DEBUG ] No samples found: mtnucratio [2026-08-14 11:53:40,155] multiqc.modules.picard.picard [INFO ] Found 59 InsertSizeMetrics reports [2026-08-14 11:53:40,276] multiqc.modules.picard.picard [INFO ] Found 59 MarkDuplicates reports [2026-08-14 11:53:40,422] multiqc.modules.picard.picard [INFO ] Found 59 RnaSeqMetrics reports [2026-08-14 11:53:40,438] multiqc [DEBUG ] No samples found: vep [2026-08-14 11:53:40,458] multiqc [DEBUG ] No samples found: sentieon [2026-08-14 11:53:40,479] multiqc [DEBUG ] No samples found: prokka [2026-08-14 11:53:40,490] multiqc [DEBUG ] No samples found: qc3C [2026-08-14 11:53:40,512] multiqc [DEBUG ] No samples found: nanostat [2026-08-14 11:53:40,519] multiqc [DEBUG ] No samples found: samblaster [2026-08-14 11:53:40,774] multiqc.modules.samtools.samtools [INFO ] Found 177 flagstat reports [2026-08-14 11:53:40,792] multiqc [DEBUG ] No samples found: sexdeterrmine [2026-08-14 11:53:40,797] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2026-08-14 11:53:40,805] multiqc [DEBUG ] No samples found: bamtools [2026-08-14 11:53:40,815] multiqc [DEBUG ] No samples found: jellyfish [2026-08-14 11:53:40,826] multiqc [DEBUG ] No samples found: vcftools [2026-08-14 11:53:40,842] multiqc [DEBUG ] No samples found: longranger [2026-08-14 11:53:40,855] multiqc [DEBUG ] No samples found: stacks [2026-08-14 11:53:40,877] multiqc [DEBUG ] No samples found: varscan2 [2026-08-14 11:53:40,896] multiqc [DEBUG ] No samples found: snippy [2026-08-14 11:53:40,956] multiqc [DEBUG ] No samples found: bbmap [2026-08-14 11:53:40,978] multiqc [DEBUG ] No samples found: bismark [2026-08-14 11:53:40,997] multiqc [DEBUG ] No samples found: biscuit [2026-08-14 11:53:41,016] multiqc [DEBUG ] No samples found: hicexplorer [2026-08-14 11:53:41,032] multiqc [DEBUG ] No samples found: hicup [2026-08-14 11:53:41,049] multiqc [DEBUG ] No samples found: hicpro [2026-08-14 11:53:41,057] multiqc [DEBUG ] No samples found: salmon [2026-08-14 11:53:41,079] multiqc [DEBUG ] No samples found: kallisto [2026-08-14 11:53:41,093] multiqc [DEBUG ] No samples found: slamdunk [2026-08-14 11:53:47,276] multiqc.modules.star.star [INFO ] Found 59 reports and 59 gene count files [2026-08-14 11:53:47,296] multiqc [DEBUG ] No samples found: hisat2 [2026-08-14 11:53:47,316] multiqc [DEBUG ] No samples found: tophat [2026-08-14 11:53:47,330] multiqc [DEBUG ] No samples found: bowtie2 [2026-08-14 11:53:47,348] multiqc [DEBUG ] No samples found: bowtie1 [2026-08-14 11:53:47,368] multiqc [DEBUG ] No samples found: snpsplit [2026-08-14 11:53:47,388] multiqc [DEBUG ] No samples found: odgi [2026-08-14 11:53:47,408] multiqc [DEBUG ] No samples found: pangolin [2026-08-14 11:53:47,416] multiqc [DEBUG ] No samples found: kat [2026-08-14 11:53:47,424] multiqc [DEBUG ] No samples found: leehom [2026-08-14 11:53:47,447] multiqc [DEBUG ] No samples found: adapterRemoval [2026-08-14 11:53:47,457] multiqc [DEBUG ] No samples found: clipandmerge [2026-08-14 11:53:47,475] multiqc [DEBUG ] No samples found: cutadapt [2026-08-14 11:53:47,482] multiqc [DEBUG ] No samples found: flexbar [2026-08-14 11:53:47,503] multiqc [DEBUG ] No samples found: kaiju [2026-08-14 11:53:47,531] multiqc [DEBUG ] No samples found: kraken [2026-08-14 11:53:47,557] multiqc [DEBUG ] No samples found: malt [2026-08-14 11:53:47,579] multiqc [DEBUG ] No samples found: trimmomatic [2026-08-14 11:53:47,595] multiqc [DEBUG ] No samples found: sickle [2026-08-14 11:53:47,618] multiqc [DEBUG ] No samples found: skewer [2026-08-14 11:53:47,628] multiqc [DEBUG ] No samples found: sortmerna [2026-08-14 11:53:47,636] multiqc [DEBUG ] No samples found: biobloomtools [2026-08-14 11:53:47,659] multiqc [DEBUG ] No samples found: fastq_screen [2026-08-14 11:53:47,682] multiqc [DEBUG ] No samples found: afterqc [2026-08-14 11:53:47,726] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:47,746] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:47,763] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:47,783] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:47,805] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:47,823] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:47,840] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:47,874] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:47,896] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:47,924] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:47,941] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:47,965] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:47,987] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,011] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,039] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,061] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,077] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,102] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,126] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,149] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,170] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,191] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,218] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,232] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,256] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,278] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,301] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,334] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,348] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,374] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,392] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,413] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,431] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,454] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,477] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,495] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,521] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,561] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,587] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,617] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,643] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,680] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,715] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,738] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,754] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,774] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,795] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,816] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,832] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,855] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,878] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,894] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,923] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,959] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:48,980] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:49,004] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:49,028] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:49,050] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:49,068] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-14 11:53:49,070] multiqc.modules.fastp.fastp [INFO ] Found 59 reports [2026-08-14 11:54:15,563] multiqc.modules.fastqc.fastqc [INFO ] Found 118 reports [2026-08-14 11:54:18,419] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2026-08-14 11:54:30,283] multiqc [DEBUG ] No samples found: pychopper [2026-08-14 11:54:30,299] multiqc [DEBUG ] No samples found: pycoqc [2026-08-14 11:54:30,321] multiqc [DEBUG ] No samples found: minionqc [2026-08-14 11:54:30,337] multiqc [DEBUG ] No samples found: multivcfanalyzer [2026-08-14 11:54:30,363] multiqc [DEBUG ] No samples found: clusterflow [2026-08-14 11:54:30,385] multiqc [DEBUG ] No samples found: bcl2fastq [2026-08-14 11:54:30,406] multiqc [DEBUG ] No samples found: bclconvert [2026-08-14 11:54:30,430] multiqc [DEBUG ] No samples found: interop [2026-08-14 11:54:30,456] multiqc [DEBUG ] No samples found: ivar [2026-08-14 11:54:30,481] multiqc [DEBUG ] No samples found: flash [2026-08-14 11:54:30,511] multiqc [DEBUG ] No samples found: seqyclean [2026-08-14 11:54:30,520] multiqc [DEBUG ] No samples found: optitype [2026-08-14 11:54:30,811] multiqc [INFO ] Compressing plot data [2026-08-14 11:54:36,045] multiqc [INFO ] Report : multiqc_report.html [2026-08-14 11:54:36,045] multiqc [INFO ] Data : multiqc_data [2026-08-14 11:54:36,045] multiqc [DEBUG ] Moving data file from '/scratch/tmp68dad2lr/multiqc_data' to '/projectnb/wax-dk/max/G260_G264_RNAseq/G262_RNAseq/Scripts/99_final_summary/G262_RNAseq_multiqc_report/multiqc_data' [2026-08-14 11:54:36,749] multiqc [INFO ] MultiQC complete [2026-08-14 11:54:36,749] multiqc [WARNING] 8 flat-image plots used in the report due to large sample numbers