Sample total_passed total_failed secondary_passed secondary_failed supplementary_passed supplementary_failed duplicates_passed duplicates_failed mapped_passed mapped_failed mapped_passed_pct mapped_failed_pct paired in sequencing_passed paired in sequencing_failed read1_passed read1_failed read2_passed read2_failed properly paired_passed properly paired_failed properly paired_passed_pct properly paired_failed_pct with itself and mate mapped_passed with itself and mate mapped_failed singletons_passed singletons_failed singletons_passed_pct singletons_failed_pct with mate mapped to a different chr_passed with mate mapped to a different chr_failed with mate mapped to a different chr (mapQ >= 5)_passed with mate mapped to a different chr (mapQ >= 5)_failed flagstat_total G261_M01_statistics_for_all_accepted_reads 15369942 0 1397030 0 0 0 0 0 15369942 0 100.0 nan 13972912 0 6986456 0 6986456 0 13972912 0 100.0 nan 13972912 0 0 0 0.0 nan 0 0 0 0 15369942 G261_M01_statistics_for_primary_reads 13972912 0 0 0 0 0 0 0 13972912 0 100.0 nan 13972912 0 6986456 0 6986456 0 13972912 0 100.0 nan 13972912 0 0 0 0.0 nan 0 0 0 0 13972912 G261_M01_statistics_for_primary_unique_reads 13130928 0 0 0 0 0 0 0 13130928 0 100.0 nan 13130928 0 6565464 0 6565464 0 13130928 0 100.0 nan 13130928 0 0 0 0.0 nan 0 0 0 0 13130928 G261_M02_statistics_for_all_accepted_reads 18283276 0 1839288 0 0 0 0 0 18283276 0 100.0 nan 16443988 0 8221994 0 8221994 0 16443988 0 100.0 nan 16443988 0 0 0 0.0 nan 0 0 0 0 18283276 G261_M02_statistics_for_primary_reads 16443988 0 0 0 0 0 0 0 16443988 0 100.0 nan 16443988 0 8221994 0 8221994 0 16443988 0 100.0 nan 16443988 0 0 0 0.0 nan 0 0 0 0 16443988 G261_M02_statistics_for_primary_unique_reads 15275416 0 0 0 0 0 0 0 15275416 0 100.0 nan 15275416 0 7637708 0 7637708 0 15275416 0 100.0 nan 15275416 0 0 0 0.0 nan 0 0 0 0 15275416 G261_M03_statistics_for_all_accepted_reads 58519606 0 5738522 0 0 0 0 0 58519606 0 100.0 nan 52781084 0 26390542 0 26390542 0 52781084 0 100.0 nan 52781084 0 0 0 0.0 nan 0 0 0 0 58519606 G261_M03_statistics_for_primary_reads 52781084 0 0 0 0 0 0 0 52781084 0 100.0 nan 52781084 0 26390542 0 26390542 0 52781084 0 100.0 nan 52781084 0 0 0 0.0 nan 0 0 0 0 52781084 G261_M03_statistics_for_primary_unique_reads 49324740 0 0 0 0 0 0 0 49324740 0 100.0 nan 49324740 0 24662370 0 24662370 0 49324740 0 100.0 nan 49324740 0 0 0 0.0 nan 0 0 0 0 49324740 G261_M04_statistics_for_all_accepted_reads 75970326 0 7964122 0 0 0 0 0 75970326 0 100.0 nan 68006204 0 34003102 0 34003102 0 68006204 0 100.0 nan 68006204 0 0 0 0.0 nan 0 0 0 0 75970326 G261_M04_statistics_for_primary_reads 68006204 0 0 0 0 0 0 0 68006204 0 100.0 nan 68006204 0 34003102 0 34003102 0 68006204 0 100.0 nan 68006204 0 0 0 0.0 nan 0 0 0 0 68006204 G261_M04_statistics_for_primary_unique_reads 63240248 0 0 0 0 0 0 0 63240248 0 100.0 nan 63240248 0 31620124 0 31620124 0 63240248 0 100.0 nan 63240248 0 0 0 0.0 nan 0 0 0 0 63240248 G261_M05_statistics_for_all_accepted_reads 44015400 0 4225932 0 0 0 0 0 44015400 0 100.0 nan 39789468 0 19894734 0 19894734 0 39789468 0 100.0 nan 39789468 0 0 0 0.0 nan 0 0 0 0 44015400 G261_M05_statistics_for_primary_reads 39789468 0 0 0 0 0 0 0 39789468 0 100.0 nan 39789468 0 19894734 0 19894734 0 39789468 0 100.0 nan 39789468 0 0 0 0.0 nan 0 0 0 0 39789468 G261_M05_statistics_for_primary_unique_reads 37377412 0 0 0 0 0 0 0 37377412 0 100.0 nan 37377412 0 18688706 0 18688706 0 37377412 0 100.0 nan 37377412 0 0 0 0.0 nan 0 0 0 0 37377412 G261_M06_statistics_for_all_accepted_reads 46892150 0 4389288 0 0 0 0 0 46892150 0 100.0 nan 42502862 0 21251431 0 21251431 0 42502862 0 100.0 nan 42502862 0 0 0 0.0 nan 0 0 0 0 46892150 G261_M06_statistics_for_primary_reads 42502862 0 0 0 0 0 0 0 42502862 0 100.0 nan 42502862 0 21251431 0 21251431 0 42502862 0 100.0 nan 42502862 0 0 0 0.0 nan 0 0 0 0 42502862 G261_M06_statistics_for_primary_unique_reads 39893960 0 0 0 0 0 0 0 39893960 0 100.0 nan 39893960 0 19946980 0 19946980 0 39893960 0 100.0 nan 39893960 0 0 0 0.0 nan 0 0 0 0 39893960 G261_M07_statistics_for_all_accepted_reads 34878374 0 3541826 0 0 0 0 0 34878374 0 100.0 nan 31336548 0 15668274 0 15668274 0 31336548 0 100.0 nan 31336548 0 0 0 0.0 nan 0 0 0 0 34878374 G261_M07_statistics_for_primary_reads 31336548 0 0 0 0 0 0 0 31336548 0 100.0 nan 31336548 0 15668274 0 15668274 0 31336548 0 100.0 nan 31336548 0 0 0 0.0 nan 0 0 0 0 31336548 G261_M07_statistics_for_primary_unique_reads 29214152 0 0 0 0 0 0 0 29214152 0 100.0 nan 29214152 0 14607076 0 14607076 0 29214152 0 100.0 nan 29214152 0 0 0 0.0 nan 0 0 0 0 29214152 G261_M08_statistics_for_all_accepted_reads 53482830 0 4715266 0 0 0 0 0 53482830 0 100.0 nan 48767564 0 24383782 0 24383782 0 48767564 0 100.0 nan 48767564 0 0 0 0.0 nan 0 0 0 0 53482830 G261_M08_statistics_for_primary_reads 48767564 0 0 0 0 0 0 0 48767564 0 100.0 nan 48767564 0 24383782 0 24383782 0 48767564 0 100.0 nan 48767564 0 0 0 0.0 nan 0 0 0 0 48767564 G261_M08_statistics_for_primary_unique_reads 45668552 0 0 0 0 0 0 0 45668552 0 100.0 nan 45668552 0 22834276 0 22834276 0 45668552 0 100.0 nan 45668552 0 0 0 0.0 nan 0 0 0 0 45668552 G261_M09_statistics_for_all_accepted_reads 63255390 0 6599202 0 0 0 0 0 63255390 0 100.0 nan 56656188 0 28328094 0 28328094 0 56656188 0 100.0 nan 56656188 0 0 0 0.0 nan 0 0 0 0 63255390 G261_M09_statistics_for_primary_reads 56656188 0 0 0 0 0 0 0 56656188 0 100.0 nan 56656188 0 28328094 0 28328094 0 56656188 0 100.0 nan 56656188 0 0 0 0.0 nan 0 0 0 0 56656188 G261_M09_statistics_for_primary_unique_reads 52482826 0 0 0 0 0 0 0 52482826 0 100.0 nan 52482826 0 26241413 0 26241413 0 52482826 0 100.0 nan 52482826 0 0 0 0.0 nan 0 0 0 0 52482826 G261_M10_statistics_for_all_accepted_reads 65500410 0 6707548 0 0 0 0 0 65500410 0 100.0 nan 58792862 0 29396431 0 29396431 0 58792862 0 100.0 nan 58792862 0 0 0 0.0 nan 0 0 0 0 65500410 G261_M10_statistics_for_primary_reads 58792862 0 0 0 0 0 0 0 58792862 0 100.0 nan 58792862 0 29396431 0 29396431 0 58792862 0 100.0 nan 58792862 0 0 0 0.0 nan 0 0 0 0 58792862 G261_M10_statistics_for_primary_unique_reads 54771024 0 0 0 0 0 0 0 54771024 0 100.0 nan 54771024 0 27385512 0 27385512 0 54771024 0 100.0 nan 54771024 0 0 0 0.0 nan 0 0 0 0 54771024 G261_M11_statistics_for_all_accepted_reads 37138106 0 3956298 0 0 0 0 0 37138106 0 100.0 nan 33181808 0 16590904 0 16590904 0 33181808 0 100.0 nan 33181808 0 0 0 0.0 nan 0 0 0 0 37138106 G261_M11_statistics_for_primary_reads 33181808 0 0 0 0 0 0 0 33181808 0 100.0 nan 33181808 0 16590904 0 16590904 0 33181808 0 100.0 nan 33181808 0 0 0 0.0 nan 0 0 0 0 33181808 G261_M11_statistics_for_primary_unique_reads 30891402 0 0 0 0 0 0 0 30891402 0 100.0 nan 30891402 0 15445701 0 15445701 0 30891402 0 100.0 nan 30891402 0 0 0 0.0 nan 0 0 0 0 30891402 G261_M12_statistics_for_all_accepted_reads 41761950 0 3301200 0 0 0 0 0 41761950 0 100.0 nan 38460750 0 19230375 0 19230375 0 38460750 0 100.0 nan 38460750 0 0 0 0.0 nan 0 0 0 0 41761950 G261_M12_statistics_for_primary_reads 38460750 0 0 0 0 0 0 0 38460750 0 100.0 nan 38460750 0 19230375 0 19230375 0 38460750 0 100.0 nan 38460750 0 0 0 0.0 nan 0 0 0 0 38460750 G261_M12_statistics_for_primary_unique_reads 36390144 0 0 0 0 0 0 0 36390144 0 100.0 nan 36390144 0 18195072 0 18195072 0 36390144 0 100.0 nan 36390144 0 0 0 0.0 nan 0 0 0 0 36390144 G261_M13_statistics_for_all_accepted_reads 37137838 0 2799862 0 0 0 0 0 37137838 0 100.0 nan 34337976 0 17168988 0 17168988 0 34337976 0 100.0 nan 34337976 0 0 0 0.0 nan 0 0 0 0 37137838 G261_M13_statistics_for_primary_reads 34337976 0 0 0 0 0 0 0 34337976 0 100.0 nan 34337976 0 17168988 0 17168988 0 34337976 0 100.0 nan 34337976 0 0 0 0.0 nan 0 0 0 0 34337976 G261_M13_statistics_for_primary_unique_reads 32296512 0 0 0 0 0 0 0 32296512 0 100.0 nan 32296512 0 16148256 0 16148256 0 32296512 0 100.0 nan 32296512 0 0 0 0.0 nan 0 0 0 0 32296512 G261_M14_statistics_for_all_accepted_reads 29907266 0 2110880 0 0 0 0 0 29907266 0 100.0 nan 27796386 0 13898193 0 13898193 0 27796386 0 100.0 nan 27796386 0 0 0 0.0 nan 0 0 0 0 29907266 G261_M14_statistics_for_primary_reads 27796386 0 0 0 0 0 0 0 27796386 0 100.0 nan 27796386 0 13898193 0 13898193 0 27796386 0 100.0 nan 27796386 0 0 0 0.0 nan 0 0 0 0 27796386 G261_M14_statistics_for_primary_unique_reads 26311876 0 0 0 0 0 0 0 26311876 0 100.0 nan 26311876 0 13155938 0 13155938 0 26311876 0 100.0 nan 26311876 0 0 0 0.0 nan 0 0 0 0 26311876 G261_M15_statistics_for_all_accepted_reads 37821710 0 2871566 0 0 0 0 0 37821710 0 100.0 nan 34950144 0 17475072 0 17475072 0 34950144 0 100.0 nan 34950144 0 0 0 0.0 nan 0 0 0 0 37821710 G261_M15_statistics_for_primary_reads 34950144 0 0 0 0 0 0 0 34950144 0 100.0 nan 34950144 0 17475072 0 17475072 0 34950144 0 100.0 nan 34950144 0 0 0 0.0 nan 0 0 0 0 34950144 G261_M15_statistics_for_primary_unique_reads 33223920 0 0 0 0 0 0 0 33223920 0 100.0 nan 33223920 0 16611960 0 16611960 0 33223920 0 100.0 nan 33223920 0 0 0 0.0 nan 0 0 0 0 33223920 G261_M16_statistics_for_all_accepted_reads 39275664 0 3005300 0 0 0 0 0 39275664 0 100.0 nan 36270364 0 18135182 0 18135182 0 36270364 0 100.0 nan 36270364 0 0 0 0.0 nan 0 0 0 0 39275664 G261_M16_statistics_for_primary_reads 36270364 0 0 0 0 0 0 0 36270364 0 100.0 nan 36270364 0 18135182 0 18135182 0 36270364 0 100.0 nan 36270364 0 0 0 0.0 nan 0 0 0 0 36270364 G261_M16_statistics_for_primary_unique_reads 34265768 0 0 0 0 0 0 0 34265768 0 100.0 nan 34265768 0 17132884 0 17132884 0 34265768 0 100.0 nan 34265768 0 0 0 0.0 nan 0 0 0 0 34265768 G261_M17_statistics_for_all_accepted_reads 36934698 0 2512518 0 0 0 0 0 36934698 0 100.0 nan 34422180 0 17211090 0 17211090 0 34422180 0 100.0 nan 34422180 0 0 0 0.0 nan 0 0 0 0 36934698 G261_M17_statistics_for_primary_reads 34422180 0 0 0 0 0 0 0 34422180 0 100.0 nan 34422180 0 17211090 0 17211090 0 34422180 0 100.0 nan 34422180 0 0 0 0.0 nan 0 0 0 0 34422180 G261_M17_statistics_for_primary_unique_reads 32995286 0 0 0 0 0 0 0 32995286 0 100.0 nan 32995286 0 16497643 0 16497643 0 32995286 0 100.0 nan 32995286 0 0 0 0.0 nan 0 0 0 0 32995286 G261_M18_statistics_for_all_accepted_reads 35265364 0 2565062 0 0 0 0 0 35265364 0 100.0 nan 32700302 0 16350151 0 16350151 0 32700302 0 100.0 nan 32700302 0 0 0 0.0 nan 0 0 0 0 35265364 G261_M18_statistics_for_primary_reads 32700302 0 0 0 0 0 0 0 32700302 0 100.0 nan 32700302 0 16350151 0 16350151 0 32700302 0 100.0 nan 32700302 0 0 0 0.0 nan 0 0 0 0 32700302 G261_M18_statistics_for_primary_unique_reads 31021304 0 0 0 0 0 0 0 31021304 0 100.0 nan 31021304 0 15510652 0 15510652 0 31021304 0 100.0 nan 31021304 0 0 0 0.0 nan 0 0 0 0 31021304 G261_M19_statistics_for_all_accepted_reads 97823614 0 7340642 0 0 0 0 0 97823614 0 100.0 nan 90482972 0 45241486 0 45241486 0 90482972 0 100.0 nan 90482972 0 0 0 0.0 nan 0 0 0 0 97823614 G261_M19_statistics_for_primary_reads 90482972 0 0 0 0 0 0 0 90482972 0 100.0 nan 90482972 0 45241486 0 45241486 0 90482972 0 100.0 nan 90482972 0 0 0 0.0 nan 0 0 0 0 90482972 G261_M19_statistics_for_primary_unique_reads 86080810 0 0 0 0 0 0 0 86080810 0 100.0 nan 86080810 0 43040405 0 43040405 0 86080810 0 100.0 nan 86080810 0 0 0 0.0 nan 0 0 0 0 86080810 G261_M20_statistics_for_all_accepted_reads 54874716 0 4200846 0 0 0 0 0 54874716 0 100.0 nan 50673870 0 25336935 0 25336935 0 50673870 0 100.0 nan 50673870 0 0 0 0.0 nan 0 0 0 0 54874716 G261_M20_statistics_for_primary_reads 50673870 0 0 0 0 0 0 0 50673870 0 100.0 nan 50673870 0 25336935 0 25336935 0 50673870 0 100.0 nan 50673870 0 0 0 0.0 nan 0 0 0 0 50673870 G261_M20_statistics_for_primary_unique_reads 48094988 0 0 0 0 0 0 0 48094988 0 100.0 nan 48094988 0 24047494 0 24047494 0 48094988 0 100.0 nan 48094988 0 0 0 0.0 nan 0 0 0 0 48094988 G261_M21_statistics_for_all_accepted_reads 29688322 0 2140158 0 0 0 0 0 29688322 0 100.0 nan 27548164 0 13774082 0 13774082 0 27548164 0 100.0 nan 27548164 0 0 0 0.0 nan 0 0 0 0 29688322 G261_M21_statistics_for_primary_reads 27548164 0 0 0 0 0 0 0 27548164 0 100.0 nan 27548164 0 13774082 0 13774082 0 27548164 0 100.0 nan 27548164 0 0 0 0.0 nan 0 0 0 0 27548164 G261_M21_statistics_for_primary_unique_reads 26121120 0 0 0 0 0 0 0 26121120 0 100.0 nan 26121120 0 13060560 0 13060560 0 26121120 0 100.0 nan 26121120 0 0 0 0.0 nan 0 0 0 0 26121120 G261_M22_statistics_for_all_accepted_reads 42056188 0 3414618 0 0 0 0 0 42056188 0 100.0 nan 38641570 0 19320785 0 19320785 0 38641570 0 100.0 nan 38641570 0 0 0 0.0 nan 0 0 0 0 42056188 G261_M22_statistics_for_primary_reads 38641570 0 0 0 0 0 0 0 38641570 0 100.0 nan 38641570 0 19320785 0 19320785 0 38641570 0 100.0 nan 38641570 0 0 0 0.0 nan 0 0 0 0 38641570 G261_M22_statistics_for_primary_unique_reads 36355864 0 0 0 0 0 0 0 36355864 0 100.0 nan 36355864 0 18177932 0 18177932 0 36355864 0 100.0 nan 36355864 0 0 0 0.0 nan 0 0 0 0 36355864 G261_M23_statistics_for_all_accepted_reads 33853370 0 2507880 0 0 0 0 0 33853370 0 100.0 nan 31345490 0 15672745 0 15672745 0 31345490 0 100.0 nan 31345490 0 0 0 0.0 nan 0 0 0 0 33853370 G261_M23_statistics_for_primary_reads 31345490 0 0 0 0 0 0 0 31345490 0 100.0 nan 31345490 0 15672745 0 15672745 0 31345490 0 100.0 nan 31345490 0 0 0 0.0 nan 0 0 0 0 31345490 G261_M23_statistics_for_primary_unique_reads 29687868 0 0 0 0 0 0 0 29687868 0 100.0 nan 29687868 0 14843934 0 14843934 0 29687868 0 100.0 nan 29687868 0 0 0 0.0 nan 0 0 0 0 29687868