[2026-08-13 17:16:56,775] multiqc [DEBUG ] This is MultiQC v1.11 [2026-08-13 17:16:56,775] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2026-08-13 17:16:56,776] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2026-08-13 17:16:56,776] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2026-08-13 17:16:56,777] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/G260_G264_RNAseq/G261_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2026-08-13 17:16:56,777] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2026-08-13 17:16:56,778] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2026-08-13 17:16:56,778] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G260_G264_RNAseq/G261_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G260_G264_RNAseq/G261_RNAseq/SAMPLES /projectnb2/wax-dk/max/G260_G264_RNAseq/G261_RNAseq/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G260_G264_RNAseq/G261_RNAseq/Scripts/06_CollectMetrics/ [2026-08-13 17:16:57,393] multiqc [WARNING] MultiQC Version v1.35 now available! [2026-08-13 17:16:57,393] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G260_G264_RNAseq/G261_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G260_G264_RNAseq/G261_RNAseq/SAMPLES /projectnb2/wax-dk/max/G260_G264_RNAseq/G261_RNAseq/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G260_G264_RNAseq/G261_RNAseq/Scripts/06_CollectMetrics/ [2026-08-13 17:16:57,394] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G260_G264_RNAseq/G261_RNAseq/Scripts/99_final_summary/G261_RNAseq_multiqc_report [2026-08-13 17:16:57,394] multiqc [DEBUG ] Template : default [2026-08-13 17:16:57,394] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2026-08-13 17:16:57,395] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2026-08-13 17:16:57,395] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpeeuva5x8 [2026-08-13 17:16:57,710] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G260_G264_RNAseq/G261_RNAseq/SAMPLES [2026-08-13 17:16:57,710] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G260_G264_RNAseq/G261_RNAseq/Scripts/03_FASTQC [2026-08-13 17:16:57,711] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G260_G264_RNAseq/G261_RNAseq/Scripts/06_CollectMetrics [2026-08-13 17:16:58,453] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M20-HNF6-fl-fl-KO_R1_001.fastq.gz [2026-08-13 17:16:58,453] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M20-HNF6-fl-fl-KO_R2_001.fastq.gz [2026-08-13 17:16:58,576] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M20_SJ.out.tab [2026-08-13 17:16:58,579] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M20_SJ.out.tab [2026-08-13 17:16:58,580] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M20_SJ.out.tab [2026-08-13 17:16:58,580] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M20_SJ.out.tab [2026-08-13 17:16:58,585] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M20_SJ.out.tab [2026-08-13 17:16:58,585] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M20_SJ.out.tab [2026-08-13 17:16:58,585] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M20_SJ.out.tab [2026-08-13 17:16:58,585] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M20_SJ.out.tab [2026-08-13 17:16:58,585] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M20_SJ.out.tab [2026-08-13 17:16:58,585] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M20_SJ.out.tab [2026-08-13 17:16:58,585] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M20_SJ.out.tab [2026-08-13 17:16:58,585] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M20_SJ.out.tab [2026-08-13 17:16:58,585] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G261_M20_SJ.out.tab [2026-08-13 17:16:58,585] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M20_SJ.out.tab [2026-08-13 17:17:01,006] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M20_marked_dup_metrics.txt [2026-08-13 17:17:01,009] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M20_marked_dup_metrics.txt [2026-08-13 17:17:01,009] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M20_marked_dup_metrics.txt [2026-08-13 17:17:01,009] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M20_marked_dup_metrics.txt [2026-08-13 17:17:01,014] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M20_marked_dup_metrics.txt [2026-08-13 17:17:01,068] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M20_metrics [2026-08-13 17:17:01,072] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M20_metrics [2026-08-13 17:17:01,072] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M20_metrics [2026-08-13 17:17:01,072] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M20_metrics [2026-08-13 17:17:01,077] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M20_metrics [2026-08-13 17:17:01,138] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261_M20_hist.pdf [2026-08-13 17:17:01,165] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:01,168] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:01,168] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:01,169] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:01,174] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:01,174] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:01,174] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:01,174] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:01,174] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:01,174] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:01,174] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:01,174] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:01,193] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:02,129] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:02,132] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:02,132] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:02,132] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:02,137] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:02,137] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:02,137] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:02,137] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:02,137] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:02,137] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:02,137] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:02,137] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:02,157] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M20_featureCounts.out [2026-08-13 17:17:03,063] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M20_metrics [2026-08-13 17:17:03,066] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M20_metrics [2026-08-13 17:17:03,071] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M20_metrics [2026-08-13 17:17:03,121] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M14-HNF6-fl-fl_R1_001.fastq.gz [2026-08-13 17:17:03,121] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M14-HNF6-fl-fl_R2_001.fastq.gz [2026-08-13 17:17:03,181] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M14_SJ.out.tab [2026-08-13 17:17:03,186] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M14_SJ.out.tab [2026-08-13 17:17:03,186] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M14_SJ.out.tab [2026-08-13 17:17:03,186] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M14_SJ.out.tab [2026-08-13 17:17:03,192] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M14_SJ.out.tab [2026-08-13 17:17:03,192] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M14_SJ.out.tab [2026-08-13 17:17:03,192] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M14_SJ.out.tab [2026-08-13 17:17:03,192] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M14_SJ.out.tab [2026-08-13 17:17:03,193] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M14_SJ.out.tab [2026-08-13 17:17:03,193] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M14_SJ.out.tab [2026-08-13 17:17:03,193] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M14_SJ.out.tab [2026-08-13 17:17:03,193] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M14_SJ.out.tab [2026-08-13 17:17:03,193] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G261_M14_SJ.out.tab [2026-08-13 17:17:03,193] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M14_SJ.out.tab [2026-08-13 17:17:05,382] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M14_marked_dup_metrics.txt [2026-08-13 17:17:05,387] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M14_marked_dup_metrics.txt [2026-08-13 17:17:05,388] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M14_marked_dup_metrics.txt [2026-08-13 17:17:05,388] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M14_marked_dup_metrics.txt [2026-08-13 17:17:05,396] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M14_marked_dup_metrics.txt [2026-08-13 17:17:05,440] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M14_metrics [2026-08-13 17:17:05,444] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M14_metrics [2026-08-13 17:17:05,444] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M14_metrics [2026-08-13 17:17:05,444] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M14_metrics [2026-08-13 17:17:05,449] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M14_metrics [2026-08-13 17:17:05,529] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261_M14_hist.pdf [2026-08-13 17:17:05,555] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:05,560] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:05,561] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:05,561] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:05,568] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:05,569] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:05,569] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:05,569] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:05,569] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:05,569] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:05,569] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:05,569] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:05,590] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:06,516] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:06,519] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:06,520] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:06,520] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:06,524] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:06,524] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:06,524] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:06,524] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:06,524] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:06,525] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:06,525] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:06,525] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:06,544] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M14_featureCounts.out [2026-08-13 17:17:07,462] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M14_metrics [2026-08-13 17:17:07,464] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M14_metrics [2026-08-13 17:17:07,469] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M14_metrics [2026-08-13 17:17:07,519] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M19-HNF6-fl-fl-KO_R2_001.fastq.gz [2026-08-13 17:17:07,519] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M19-HNF6-fl-fl-KO_R1_001.fastq.gz [2026-08-13 17:17:07,645] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M19_SJ.out.tab [2026-08-13 17:17:07,649] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M19_SJ.out.tab [2026-08-13 17:17:07,649] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M19_SJ.out.tab [2026-08-13 17:17:07,649] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M19_SJ.out.tab [2026-08-13 17:17:07,654] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M19_SJ.out.tab [2026-08-13 17:17:07,654] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M19_SJ.out.tab [2026-08-13 17:17:07,654] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M19_SJ.out.tab [2026-08-13 17:17:07,654] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M19_SJ.out.tab [2026-08-13 17:17:07,654] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M19_SJ.out.tab [2026-08-13 17:17:07,655] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M19_SJ.out.tab [2026-08-13 17:17:07,655] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M19_SJ.out.tab [2026-08-13 17:17:07,655] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M19_SJ.out.tab [2026-08-13 17:17:07,655] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G261_M19_SJ.out.tab [2026-08-13 17:17:07,655] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M19_SJ.out.tab [2026-08-13 17:17:10,383] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M19_marked_dup_metrics.txt [2026-08-13 17:17:10,387] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M19_marked_dup_metrics.txt [2026-08-13 17:17:10,388] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M19_marked_dup_metrics.txt [2026-08-13 17:17:10,388] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M19_marked_dup_metrics.txt [2026-08-13 17:17:10,394] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M19_marked_dup_metrics.txt [2026-08-13 17:17:10,426] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261_M19_hist.pdf [2026-08-13 17:17:10,444] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M19_metrics [2026-08-13 17:17:10,448] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M19_metrics [2026-08-13 17:17:10,448] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M19_metrics [2026-08-13 17:17:10,448] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M19_metrics [2026-08-13 17:17:10,454] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M19_metrics [2026-08-13 17:17:10,564] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:10,568] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:10,569] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:10,569] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:10,575] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:10,575] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:10,575] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:10,575] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:10,575] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:10,575] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:10,575] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:10,576] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:10,596] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:11,545] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:11,550] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:11,551] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:11,551] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:11,557] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:11,557] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:11,557] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:11,557] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:11,557] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:11,557] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:11,557] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:11,557] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:11,578] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M19_featureCounts.out [2026-08-13 17:17:12,486] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M19_metrics [2026-08-13 17:17:12,489] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M19_metrics [2026-08-13 17:17:12,506] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M19_metrics [2026-08-13 17:17:12,549] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M16-HNF6-fl-fl_R1_001.fastq.gz [2026-08-13 17:17:12,549] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M16-HNF6-fl-fl_R2_001.fastq.gz [2026-08-13 17:17:12,598] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M16_SJ.out.tab [2026-08-13 17:17:12,602] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M16_SJ.out.tab [2026-08-13 17:17:12,603] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M16_SJ.out.tab [2026-08-13 17:17:12,603] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M16_SJ.out.tab [2026-08-13 17:17:12,609] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M16_SJ.out.tab [2026-08-13 17:17:12,609] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M16_SJ.out.tab [2026-08-13 17:17:12,609] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M16_SJ.out.tab [2026-08-13 17:17:12,609] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M16_SJ.out.tab [2026-08-13 17:17:12,609] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M16_SJ.out.tab [2026-08-13 17:17:12,609] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M16_SJ.out.tab [2026-08-13 17:17:12,609] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M16_SJ.out.tab [2026-08-13 17:17:12,609] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M16_SJ.out.tab [2026-08-13 17:17:12,609] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G261_M16_SJ.out.tab [2026-08-13 17:17:12,610] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M16_SJ.out.tab [2026-08-13 17:17:14,947] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M16_marked_dup_metrics.txt [2026-08-13 17:17:14,951] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M16_marked_dup_metrics.txt [2026-08-13 17:17:14,952] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M16_marked_dup_metrics.txt [2026-08-13 17:17:14,952] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M16_marked_dup_metrics.txt [2026-08-13 17:17:14,958] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M16_marked_dup_metrics.txt [2026-08-13 17:17:14,979] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261_M16_hist.pdf [2026-08-13 17:17:15,003] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M16_metrics [2026-08-13 17:17:15,007] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M16_metrics [2026-08-13 17:17:15,007] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M16_metrics [2026-08-13 17:17:15,008] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M16_metrics [2026-08-13 17:17:15,014] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M16_metrics [2026-08-13 17:17:15,115] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:15,118] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:15,118] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:15,118] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:15,124] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:15,124] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:15,124] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:15,124] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:15,124] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:15,124] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:15,124] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:15,124] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:15,142] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:16,092] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:16,097] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:16,098] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:16,098] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:16,104] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:16,104] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:16,104] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:16,104] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:16,104] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:16,104] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:16,104] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:16,104] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:16,124] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M16_featureCounts.out [2026-08-13 17:17:17,038] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M16_metrics [2026-08-13 17:17:17,041] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M16_metrics [2026-08-13 17:17:17,046] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M16_metrics [2026-08-13 17:17:17,093] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M03-HNF6-fl-fl_R1_001.fastq.gz [2026-08-13 17:17:17,093] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M03-HNF6-fl-fl_R2_001.fastq.gz [2026-08-13 17:17:17,247] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M03_SJ.out.tab [2026-08-13 17:17:17,252] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M03_SJ.out.tab [2026-08-13 17:17:17,253] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M03_SJ.out.tab [2026-08-13 17:17:17,253] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M03_SJ.out.tab [2026-08-13 17:17:17,259] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M03_SJ.out.tab [2026-08-13 17:17:17,260] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M03_SJ.out.tab [2026-08-13 17:17:17,260] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M03_SJ.out.tab [2026-08-13 17:17:17,260] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M03_SJ.out.tab [2026-08-13 17:17:17,260] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M03_SJ.out.tab [2026-08-13 17:17:17,260] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M03_SJ.out.tab [2026-08-13 17:17:17,260] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M03_SJ.out.tab [2026-08-13 17:17:17,260] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M03_SJ.out.tab [2026-08-13 17:17:17,260] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G261_M03_SJ.out.tab [2026-08-13 17:17:17,260] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M03_SJ.out.tab [2026-08-13 17:17:19,661] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M03_marked_dup_metrics.txt [2026-08-13 17:17:19,664] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M03_marked_dup_metrics.txt [2026-08-13 17:17:19,664] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M03_marked_dup_metrics.txt [2026-08-13 17:17:19,664] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M03_marked_dup_metrics.txt [2026-08-13 17:17:19,672] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M03_marked_dup_metrics.txt [2026-08-13 17:17:19,718] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M03_metrics [2026-08-13 17:17:19,721] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M03_metrics [2026-08-13 17:17:19,721] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M03_metrics [2026-08-13 17:17:19,721] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M03_metrics [2026-08-13 17:17:19,726] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M03_metrics [2026-08-13 17:17:19,785] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261_M03_hist.pdf [2026-08-13 17:17:19,827] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:19,830] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:19,831] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:19,831] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:19,836] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:19,836] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:19,836] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:19,837] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:19,837] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:19,837] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:19,837] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:19,837] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:19,863] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:20,818] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:20,822] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:20,823] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:20,823] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:20,828] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:20,828] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:20,829] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:20,829] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:20,829] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:20,829] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:20,829] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:20,829] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:20,848] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M03_featureCounts.out [2026-08-13 17:17:21,752] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M03_metrics [2026-08-13 17:17:21,757] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M03_metrics [2026-08-13 17:17:21,763] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M03_metrics [2026-08-13 17:17:21,807] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M08-HNF6-fl-fl-KO_R2_001.fastq.gz [2026-08-13 17:17:21,807] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M08-HNF6-fl-fl-KO_R1_001.fastq.gz [2026-08-13 17:17:21,875] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M08_SJ.out.tab [2026-08-13 17:17:21,879] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M08_SJ.out.tab [2026-08-13 17:17:21,880] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M08_SJ.out.tab [2026-08-13 17:17:21,880] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M08_SJ.out.tab [2026-08-13 17:17:21,887] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M08_SJ.out.tab [2026-08-13 17:17:21,887] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M08_SJ.out.tab [2026-08-13 17:17:21,887] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M08_SJ.out.tab [2026-08-13 17:17:21,887] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M08_SJ.out.tab [2026-08-13 17:17:21,887] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M08_SJ.out.tab [2026-08-13 17:17:21,887] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M08_SJ.out.tab [2026-08-13 17:17:21,887] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M08_SJ.out.tab [2026-08-13 17:17:21,887] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M08_SJ.out.tab [2026-08-13 17:17:21,887] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G261_M08_SJ.out.tab [2026-08-13 17:17:21,887] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M08_SJ.out.tab [2026-08-13 17:17:24,111] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M08_marked_dup_metrics.txt [2026-08-13 17:17:24,113] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M08_marked_dup_metrics.txt [2026-08-13 17:17:24,114] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M08_marked_dup_metrics.txt [2026-08-13 17:17:24,114] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M08_marked_dup_metrics.txt [2026-08-13 17:17:24,122] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M08_marked_dup_metrics.txt [2026-08-13 17:17:24,169] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M08_metrics [2026-08-13 17:17:24,172] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M08_metrics [2026-08-13 17:17:24,173] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M08_metrics [2026-08-13 17:17:24,173] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M08_metrics [2026-08-13 17:17:24,180] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M08_metrics [2026-08-13 17:17:24,239] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261_M08_hist.pdf [2026-08-13 17:17:24,287] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:24,290] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:24,290] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:24,290] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:24,295] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:24,295] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:24,295] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:24,296] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:24,296] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:24,296] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:24,296] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:24,296] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:24,315] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:25,234] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:25,237] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:25,252] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:25,252] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:25,260] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:25,260] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:25,261] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:25,261] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:25,261] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:25,261] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:25,261] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:25,261] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:25,283] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M08_featureCounts.out [2026-08-13 17:17:26,174] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M08_metrics [2026-08-13 17:17:26,177] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M08_metrics [2026-08-13 17:17:26,182] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M08_metrics [2026-08-13 17:17:26,240] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M21-HNF6-fl-fl-KO_R1_001.fastq.gz [2026-08-13 17:17:26,241] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M21-HNF6-fl-fl-KO_R2_001.fastq.gz [2026-08-13 17:17:26,318] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M21_SJ.out.tab [2026-08-13 17:17:26,322] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M21_SJ.out.tab [2026-08-13 17:17:26,323] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M21_SJ.out.tab [2026-08-13 17:17:26,323] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M21_SJ.out.tab [2026-08-13 17:17:26,329] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M21_SJ.out.tab [2026-08-13 17:17:26,329] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M21_SJ.out.tab [2026-08-13 17:17:26,329] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M21_SJ.out.tab [2026-08-13 17:17:26,329] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M21_SJ.out.tab [2026-08-13 17:17:26,330] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M21_SJ.out.tab [2026-08-13 17:17:26,330] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M21_SJ.out.tab [2026-08-13 17:17:26,330] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M21_SJ.out.tab [2026-08-13 17:17:26,330] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M21_SJ.out.tab [2026-08-13 17:17:26,330] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G261_M21_SJ.out.tab [2026-08-13 17:17:26,330] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M21_SJ.out.tab [2026-08-13 17:17:28,440] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M21_marked_dup_metrics.txt [2026-08-13 17:17:28,445] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M21_marked_dup_metrics.txt [2026-08-13 17:17:28,445] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M21_marked_dup_metrics.txt [2026-08-13 17:17:28,445] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M21_marked_dup_metrics.txt [2026-08-13 17:17:28,451] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M21_marked_dup_metrics.txt [2026-08-13 17:17:28,467] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261_M21_hist.pdf [2026-08-13 17:17:28,486] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M21_metrics [2026-08-13 17:17:28,490] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M21_metrics [2026-08-13 17:17:28,491] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M21_metrics [2026-08-13 17:17:28,491] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M21_metrics [2026-08-13 17:17:28,497] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M21_metrics [2026-08-13 17:17:28,611] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:28,615] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:28,616] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:28,616] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:28,623] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:28,623] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:28,623] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:28,623] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:28,623] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:28,623] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:28,624] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:28,624] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:28,644] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:29,596] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:29,600] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:29,600] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:29,601] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:29,607] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:29,607] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:29,607] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:29,607] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:29,607] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:29,607] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:29,607] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:29,607] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:29,627] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M21_featureCounts.out [2026-08-13 17:17:30,526] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M21_metrics [2026-08-13 17:17:30,529] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M21_metrics [2026-08-13 17:17:30,548] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M21_metrics [2026-08-13 17:17:30,610] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M23-HNF6-fl-fl-KO_R2_001.fastq.gz [2026-08-13 17:17:30,611] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M23-HNF6-fl-fl-KO_R1_001.fastq.gz [2026-08-13 17:17:30,662] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M23_SJ.out.tab [2026-08-13 17:17:30,666] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M23_SJ.out.tab [2026-08-13 17:17:30,667] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M23_SJ.out.tab [2026-08-13 17:17:30,667] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M23_SJ.out.tab [2026-08-13 17:17:30,673] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M23_SJ.out.tab [2026-08-13 17:17:30,673] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M23_SJ.out.tab [2026-08-13 17:17:30,673] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M23_SJ.out.tab [2026-08-13 17:17:30,673] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M23_SJ.out.tab [2026-08-13 17:17:30,673] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M23_SJ.out.tab [2026-08-13 17:17:30,673] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M23_SJ.out.tab [2026-08-13 17:17:30,673] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M23_SJ.out.tab [2026-08-13 17:17:30,673] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M23_SJ.out.tab [2026-08-13 17:17:30,673] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G261_M23_SJ.out.tab [2026-08-13 17:17:30,673] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M23_SJ.out.tab [2026-08-13 17:17:32,843] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M23_marked_dup_metrics.txt [2026-08-13 17:17:32,847] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M23_marked_dup_metrics.txt [2026-08-13 17:17:32,847] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M23_marked_dup_metrics.txt [2026-08-13 17:17:32,847] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M23_marked_dup_metrics.txt [2026-08-13 17:17:32,852] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M23_marked_dup_metrics.txt [2026-08-13 17:17:32,898] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M23_metrics [2026-08-13 17:17:32,902] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M23_metrics [2026-08-13 17:17:32,902] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M23_metrics [2026-08-13 17:17:32,902] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M23_metrics [2026-08-13 17:17:32,908] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M23_metrics [2026-08-13 17:17:32,962] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261_M23_hist.pdf [2026-08-13 17:17:33,018] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:33,020] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:33,021] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:33,021] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:33,025] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:33,025] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:33,025] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:33,025] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:33,025] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:33,025] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:33,025] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:33,025] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:33,043] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:33,972] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:33,976] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:33,976] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:33,976] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:33,983] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:33,983] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:33,983] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:33,984] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:33,984] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:33,984] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:33,984] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:33,984] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:34,003] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M23_featureCounts.out [2026-08-13 17:17:34,894] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M23_metrics [2026-08-13 17:17:34,897] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M23_metrics [2026-08-13 17:17:34,902] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M23_metrics [2026-08-13 17:17:34,953] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M10-HNF6-fl-fl-KO_R1_001.fastq.gz [2026-08-13 17:17:34,954] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M10-HNF6-fl-fl-KO_R2_001.fastq.gz [2026-08-13 17:17:35,120] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M10_SJ.out.tab [2026-08-13 17:17:35,124] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M10_SJ.out.tab [2026-08-13 17:17:35,125] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M10_SJ.out.tab [2026-08-13 17:17:35,125] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M10_SJ.out.tab [2026-08-13 17:17:35,131] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M10_SJ.out.tab [2026-08-13 17:17:35,131] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M10_SJ.out.tab [2026-08-13 17:17:35,131] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M10_SJ.out.tab [2026-08-13 17:17:35,131] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M10_SJ.out.tab [2026-08-13 17:17:35,131] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M10_SJ.out.tab [2026-08-13 17:17:35,131] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M10_SJ.out.tab [2026-08-13 17:17:35,131] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M10_SJ.out.tab [2026-08-13 17:17:35,131] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M10_SJ.out.tab [2026-08-13 17:17:35,131] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G261_M10_SJ.out.tab [2026-08-13 17:17:35,131] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M10_SJ.out.tab [2026-08-13 17:17:37,386] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M10_marked_dup_metrics.txt [2026-08-13 17:17:37,391] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M10_marked_dup_metrics.txt [2026-08-13 17:17:37,392] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M10_marked_dup_metrics.txt [2026-08-13 17:17:37,392] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M10_marked_dup_metrics.txt [2026-08-13 17:17:37,398] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M10_marked_dup_metrics.txt [2026-08-13 17:17:37,422] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261_M10_hist.pdf [2026-08-13 17:17:37,438] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M10_metrics [2026-08-13 17:17:37,441] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M10_metrics [2026-08-13 17:17:37,441] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M10_metrics [2026-08-13 17:17:37,441] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M10_metrics [2026-08-13 17:17:37,446] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M10_metrics [2026-08-13 17:17:37,548] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:37,552] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:37,552] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:37,553] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:37,558] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:37,558] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:37,558] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:37,558] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:37,558] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:37,558] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:37,558] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:37,558] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:37,577] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:38,500] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:38,503] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:38,504] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:38,504] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:38,509] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:38,510] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:38,510] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:38,510] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:38,510] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:38,510] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:38,510] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:38,510] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:38,529] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M10_featureCounts.out [2026-08-13 17:17:39,416] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M10_metrics [2026-08-13 17:17:39,420] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M10_metrics [2026-08-13 17:17:39,424] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M10_metrics [2026-08-13 17:17:39,466] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M15-HNF6-fl-fl_R2_001.fastq.gz [2026-08-13 17:17:39,467] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M15-HNF6-fl-fl_R1_001.fastq.gz [2026-08-13 17:17:39,535] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M15_SJ.out.tab [2026-08-13 17:17:39,540] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M15_SJ.out.tab [2026-08-13 17:17:39,540] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M15_SJ.out.tab [2026-08-13 17:17:39,541] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M15_SJ.out.tab [2026-08-13 17:17:39,547] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M15_SJ.out.tab [2026-08-13 17:17:39,547] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M15_SJ.out.tab [2026-08-13 17:17:39,547] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M15_SJ.out.tab [2026-08-13 17:17:39,547] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M15_SJ.out.tab [2026-08-13 17:17:39,547] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M15_SJ.out.tab [2026-08-13 17:17:39,547] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M15_SJ.out.tab [2026-08-13 17:17:39,547] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M15_SJ.out.tab [2026-08-13 17:17:39,547] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M15_SJ.out.tab [2026-08-13 17:17:39,547] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G261_M15_SJ.out.tab [2026-08-13 17:17:39,547] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M15_SJ.out.tab [2026-08-13 17:17:41,711] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M15_marked_dup_metrics.txt [2026-08-13 17:17:41,717] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M15_marked_dup_metrics.txt [2026-08-13 17:17:41,717] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M15_marked_dup_metrics.txt [2026-08-13 17:17:41,717] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M15_marked_dup_metrics.txt [2026-08-13 17:17:41,726] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M15_marked_dup_metrics.txt [2026-08-13 17:17:41,765] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M15_metrics [2026-08-13 17:17:41,767] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M15_metrics [2026-08-13 17:17:41,767] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M15_metrics [2026-08-13 17:17:41,767] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M15_metrics [2026-08-13 17:17:41,773] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M15_metrics [2026-08-13 17:17:41,849] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261_M15_hist.pdf [2026-08-13 17:17:41,891] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:41,894] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:41,894] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:41,894] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:41,899] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:41,899] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:41,899] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:41,899] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:41,899] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:41,899] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:41,899] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:41,899] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:41,917] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:42,860] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:42,865] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:42,865] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:42,865] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:42,872] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:42,873] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:42,873] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:42,873] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:42,873] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:42,873] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:42,873] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:42,873] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:42,893] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M15_featureCounts.out [2026-08-13 17:17:43,793] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M15_metrics [2026-08-13 17:17:43,797] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M15_metrics [2026-08-13 17:17:43,802] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M15_metrics [2026-08-13 17:17:43,853] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M12-HNF6-fl-fl-KO_R2_001.fastq.gz [2026-08-13 17:17:43,853] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M12-HNF6-fl-fl-KO_R1_001.fastq.gz [2026-08-13 17:17:43,959] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M12_SJ.out.tab [2026-08-13 17:17:43,962] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M12_SJ.out.tab [2026-08-13 17:17:43,963] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M12_SJ.out.tab [2026-08-13 17:17:43,963] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M12_SJ.out.tab [2026-08-13 17:17:43,968] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M12_SJ.out.tab [2026-08-13 17:17:43,968] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M12_SJ.out.tab [2026-08-13 17:17:43,968] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M12_SJ.out.tab [2026-08-13 17:17:43,968] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M12_SJ.out.tab [2026-08-13 17:17:43,968] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M12_SJ.out.tab [2026-08-13 17:17:43,968] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M12_SJ.out.tab [2026-08-13 17:17:43,968] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M12_SJ.out.tab [2026-08-13 17:17:43,969] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M12_SJ.out.tab [2026-08-13 17:17:43,969] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G261_M12_SJ.out.tab [2026-08-13 17:17:43,969] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M12_SJ.out.tab [2026-08-13 17:17:46,266] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M12_marked_dup_metrics.txt [2026-08-13 17:17:46,270] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M12_marked_dup_metrics.txt [2026-08-13 17:17:46,271] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M12_marked_dup_metrics.txt [2026-08-13 17:17:46,271] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M12_marked_dup_metrics.txt [2026-08-13 17:17:46,279] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M12_marked_dup_metrics.txt [2026-08-13 17:17:46,316] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M12_metrics [2026-08-13 17:17:46,318] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M12_metrics [2026-08-13 17:17:46,319] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M12_metrics [2026-08-13 17:17:46,319] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M12_metrics [2026-08-13 17:17:46,323] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M12_metrics [2026-08-13 17:17:46,388] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261_M12_hist.pdf [2026-08-13 17:17:46,435] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:46,437] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:46,437] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:46,437] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:46,441] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:46,442] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:46,442] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:46,442] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:46,442] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:46,442] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:46,442] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:46,442] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:46,459] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:47,387] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:47,391] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:47,391] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:47,391] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:47,398] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:47,398] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:47,398] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:47,398] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:47,398] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:47,398] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:47,398] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:47,398] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:47,418] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M12_featureCounts.out [2026-08-13 17:17:48,323] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M12_metrics [2026-08-13 17:17:48,325] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M12_metrics [2026-08-13 17:17:48,330] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M12_metrics [2026-08-13 17:17:48,374] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M17-HNF6-fl-fl_R1_001.fastq.gz [2026-08-13 17:17:48,375] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M17-HNF6-fl-fl_R2_001.fastq.gz [2026-08-13 17:17:48,431] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M17_SJ.out.tab [2026-08-13 17:17:48,436] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M17_SJ.out.tab [2026-08-13 17:17:48,436] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M17_SJ.out.tab [2026-08-13 17:17:48,436] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M17_SJ.out.tab [2026-08-13 17:17:48,443] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M17_SJ.out.tab [2026-08-13 17:17:48,443] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M17_SJ.out.tab [2026-08-13 17:17:48,443] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M17_SJ.out.tab [2026-08-13 17:17:48,443] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M17_SJ.out.tab [2026-08-13 17:17:48,443] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M17_SJ.out.tab [2026-08-13 17:17:48,443] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M17_SJ.out.tab [2026-08-13 17:17:48,443] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M17_SJ.out.tab [2026-08-13 17:17:48,443] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M17_SJ.out.tab [2026-08-13 17:17:48,443] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G261_M17_SJ.out.tab [2026-08-13 17:17:48,443] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M17_SJ.out.tab [2026-08-13 17:17:50,695] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M17_marked_dup_metrics.txt [2026-08-13 17:17:50,700] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M17_marked_dup_metrics.txt [2026-08-13 17:17:50,701] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M17_marked_dup_metrics.txt [2026-08-13 17:17:50,701] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M17_marked_dup_metrics.txt [2026-08-13 17:17:50,707] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M17_marked_dup_metrics.txt [2026-08-13 17:17:50,750] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M17_metrics [2026-08-13 17:17:50,753] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M17_metrics [2026-08-13 17:17:50,753] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M17_metrics [2026-08-13 17:17:50,753] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M17_metrics [2026-08-13 17:17:50,758] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M17_metrics [2026-08-13 17:17:50,812] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261_M17_hist.pdf [2026-08-13 17:17:50,840] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:50,844] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:50,844] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:50,845] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:50,851] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:50,851] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:50,851] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:50,851] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:50,851] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:50,851] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:50,851] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:50,851] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:50,870] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:51,805] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:51,809] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:51,818] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:51,818] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:51,825] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:51,825] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:51,825] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:51,825] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:51,825] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:51,825] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:51,825] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:51,826] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:51,847] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M17_featureCounts.out [2026-08-13 17:17:52,763] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M17_metrics [2026-08-13 17:17:52,766] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M17_metrics [2026-08-13 17:17:52,770] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M17_metrics [2026-08-13 17:17:52,844] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M04-HNF6-fl-fl_R2_001.fastq.gz [2026-08-13 17:17:52,847] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M04-HNF6-fl-fl_R1_001.fastq.gz [2026-08-13 17:17:52,882] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M04_SJ.out.tab [2026-08-13 17:17:52,886] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M04_SJ.out.tab [2026-08-13 17:17:52,887] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M04_SJ.out.tab [2026-08-13 17:17:52,887] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M04_SJ.out.tab [2026-08-13 17:17:52,894] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M04_SJ.out.tab [2026-08-13 17:17:52,895] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M04_SJ.out.tab [2026-08-13 17:17:52,895] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M04_SJ.out.tab [2026-08-13 17:17:52,895] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M04_SJ.out.tab [2026-08-13 17:17:52,895] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M04_SJ.out.tab [2026-08-13 17:17:52,895] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M04_SJ.out.tab [2026-08-13 17:17:52,895] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M04_SJ.out.tab [2026-08-13 17:17:52,895] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M04_SJ.out.tab [2026-08-13 17:17:52,895] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G261_M04_SJ.out.tab [2026-08-13 17:17:52,895] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M04_SJ.out.tab [2026-08-13 17:17:55,428] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M04_marked_dup_metrics.txt [2026-08-13 17:17:55,432] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M04_marked_dup_metrics.txt [2026-08-13 17:17:55,432] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M04_marked_dup_metrics.txt [2026-08-13 17:17:55,433] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M04_marked_dup_metrics.txt [2026-08-13 17:17:55,439] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M04_marked_dup_metrics.txt [2026-08-13 17:17:55,461] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261_M04_hist.pdf [2026-08-13 17:17:55,486] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M04_metrics [2026-08-13 17:17:55,490] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M04_metrics [2026-08-13 17:17:55,491] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M04_metrics [2026-08-13 17:17:55,491] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M04_metrics [2026-08-13 17:17:55,497] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M04_metrics [2026-08-13 17:17:55,576] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:55,580] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:55,580] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:55,581] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:55,588] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:55,589] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:55,589] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:55,589] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:55,589] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:55,589] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:55,589] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:55,589] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:55,613] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:56,544] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:56,549] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:56,549] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:56,549] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:56,556] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:56,556] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:56,556] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:56,556] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:56,556] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:56,556] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:56,556] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:56,556] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:56,576] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M04_featureCounts.out [2026-08-13 17:17:57,494] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M04_metrics [2026-08-13 17:17:57,497] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M04_metrics [2026-08-13 17:17:57,514] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M04_metrics [2026-08-13 17:17:57,564] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M09-HNF6-fl-fl-KO_R1_001.fastq.gz [2026-08-13 17:17:57,567] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M09-HNF6-fl-fl-KO_R2_001.fastq.gz [2026-08-13 17:17:57,660] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M09_SJ.out.tab [2026-08-13 17:17:57,665] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M09_SJ.out.tab [2026-08-13 17:17:57,665] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M09_SJ.out.tab [2026-08-13 17:17:57,665] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M09_SJ.out.tab [2026-08-13 17:17:57,671] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M09_SJ.out.tab [2026-08-13 17:17:57,671] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M09_SJ.out.tab [2026-08-13 17:17:57,671] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M09_SJ.out.tab [2026-08-13 17:17:57,671] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M09_SJ.out.tab [2026-08-13 17:17:57,671] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M09_SJ.out.tab [2026-08-13 17:17:57,671] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M09_SJ.out.tab [2026-08-13 17:17:57,671] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M09_SJ.out.tab [2026-08-13 17:17:57,672] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M09_SJ.out.tab [2026-08-13 17:17:57,672] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G261_M09_SJ.out.tab [2026-08-13 17:17:57,672] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M09_SJ.out.tab [2026-08-13 17:17:59,958] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M09_marked_dup_metrics.txt [2026-08-13 17:17:59,962] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M09_marked_dup_metrics.txt [2026-08-13 17:17:59,962] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M09_marked_dup_metrics.txt [2026-08-13 17:17:59,962] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M09_marked_dup_metrics.txt [2026-08-13 17:17:59,969] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M09_marked_dup_metrics.txt [2026-08-13 17:18:00,027] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M09_metrics [2026-08-13 17:18:00,031] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M09_metrics [2026-08-13 17:18:00,031] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M09_metrics [2026-08-13 17:18:00,031] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M09_metrics [2026-08-13 17:18:00,038] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M09_metrics [2026-08-13 17:18:00,084] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261_M09_hist.pdf [2026-08-13 17:18:00,129] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:00,134] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:00,134] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:00,135] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:00,142] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:00,142] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:00,142] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:00,143] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:00,143] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:00,143] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:00,143] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:00,143] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:00,164] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:01,093] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:01,097] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:01,097] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:01,097] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:01,103] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:01,103] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:01,103] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:01,104] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:01,104] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:01,104] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:01,104] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:01,104] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:01,125] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M09_featureCounts.out [2026-08-13 17:18:02,035] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M09_metrics [2026-08-13 17:18:02,038] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M09_metrics [2026-08-13 17:18:02,044] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M09_metrics [2026-08-13 17:18:02,092] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M01-HNF6-fl-fl_R2_001.fastq.gz [2026-08-13 17:18:02,095] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M01-HNF6-fl-fl_R1_001.fastq.gz [2026-08-13 17:18:02,183] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M01_SJ.out.tab [2026-08-13 17:18:02,187] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M01_SJ.out.tab [2026-08-13 17:18:02,187] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M01_SJ.out.tab [2026-08-13 17:18:02,187] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M01_SJ.out.tab [2026-08-13 17:18:02,194] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M01_SJ.out.tab [2026-08-13 17:18:02,194] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M01_SJ.out.tab [2026-08-13 17:18:02,194] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M01_SJ.out.tab [2026-08-13 17:18:02,194] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M01_SJ.out.tab [2026-08-13 17:18:02,194] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M01_SJ.out.tab [2026-08-13 17:18:02,194] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M01_SJ.out.tab [2026-08-13 17:18:02,194] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M01_SJ.out.tab [2026-08-13 17:18:02,194] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M01_SJ.out.tab [2026-08-13 17:18:02,195] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G261_M01_SJ.out.tab [2026-08-13 17:18:02,195] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M01_SJ.out.tab [2026-08-13 17:18:04,034] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M01_marked_dup_metrics.txt [2026-08-13 17:18:04,068] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M01_marked_dup_metrics.txt [2026-08-13 17:18:04,072] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M01_marked_dup_metrics.txt [2026-08-13 17:18:04,072] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M01_marked_dup_metrics.txt [2026-08-13 17:18:04,135] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M01_marked_dup_metrics.txt [2026-08-13 17:18:04,261] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261_M01_hist.pdf [2026-08-13 17:18:04,332] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M01_metrics [2026-08-13 17:18:04,365] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M01_metrics [2026-08-13 17:18:04,368] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M01_metrics [2026-08-13 17:18:04,368] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M01_metrics [2026-08-13 17:18:04,388] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M01_metrics [2026-08-13 17:18:04,516] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:04,520] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:04,520] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:04,521] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:04,528] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:04,528] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:04,528] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:04,528] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:04,528] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:04,528] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:04,528] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:04,528] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:04,546] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:05,482] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:05,486] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:05,487] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:05,487] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:05,493] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:05,493] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:05,493] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:05,493] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:05,493] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:05,493] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:05,493] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:05,494] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:05,514] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M01_featureCounts.out [2026-08-13 17:18:06,403] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M01_metrics [2026-08-13 17:18:06,408] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M01_metrics [2026-08-13 17:18:06,415] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M01_metrics [2026-08-13 17:18:06,468] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M06-HNF6-fl-fl_R2_001.fastq.gz [2026-08-13 17:18:06,471] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M06-HNF6-fl-fl_R1_001.fastq.gz [2026-08-13 17:18:06,588] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M06_SJ.out.tab [2026-08-13 17:18:06,591] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M06_SJ.out.tab [2026-08-13 17:18:06,591] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M06_SJ.out.tab [2026-08-13 17:18:06,591] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M06_SJ.out.tab [2026-08-13 17:18:06,596] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M06_SJ.out.tab [2026-08-13 17:18:06,596] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M06_SJ.out.tab [2026-08-13 17:18:06,597] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M06_SJ.out.tab [2026-08-13 17:18:06,597] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M06_SJ.out.tab [2026-08-13 17:18:06,597] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M06_SJ.out.tab [2026-08-13 17:18:06,597] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M06_SJ.out.tab [2026-08-13 17:18:06,597] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M06_SJ.out.tab [2026-08-13 17:18:06,597] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M06_SJ.out.tab [2026-08-13 17:18:06,597] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G261_M06_SJ.out.tab [2026-08-13 17:18:06,597] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M06_SJ.out.tab [2026-08-13 17:18:08,932] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M06_marked_dup_metrics.txt [2026-08-13 17:18:08,936] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M06_marked_dup_metrics.txt [2026-08-13 17:18:08,937] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M06_marked_dup_metrics.txt [2026-08-13 17:18:08,937] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M06_marked_dup_metrics.txt [2026-08-13 17:18:08,942] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M06_marked_dup_metrics.txt [2026-08-13 17:18:08,957] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261_M06_hist.pdf [2026-08-13 17:18:08,971] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M06_metrics [2026-08-13 17:18:08,973] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M06_metrics [2026-08-13 17:18:08,974] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M06_metrics [2026-08-13 17:18:08,974] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M06_metrics [2026-08-13 17:18:08,979] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M06_metrics [2026-08-13 17:18:09,058] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:09,062] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:09,076] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:09,076] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:09,083] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:09,084] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:09,084] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:09,084] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:09,084] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:09,084] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:09,084] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:09,084] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:09,107] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:10,045] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:10,049] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:10,050] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:10,050] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:10,056] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:10,056] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:10,056] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:10,056] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:10,056] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:10,056] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:10,056] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:10,056] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:10,075] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M06_featureCounts.out [2026-08-13 17:18:10,984] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M06_metrics [2026-08-13 17:18:10,987] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M06_metrics [2026-08-13 17:18:10,992] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M06_metrics [2026-08-13 17:18:11,034] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M22-HNF6-fl-fl-KO_R1_001.fastq.gz [2026-08-13 17:18:11,037] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M22-HNF6-fl-fl-KO_R2_001.fastq.gz [2026-08-13 17:18:11,104] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M22_SJ.out.tab [2026-08-13 17:18:11,108] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M22_SJ.out.tab [2026-08-13 17:18:11,109] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M22_SJ.out.tab [2026-08-13 17:18:11,109] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M22_SJ.out.tab [2026-08-13 17:18:11,116] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M22_SJ.out.tab [2026-08-13 17:18:11,116] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M22_SJ.out.tab [2026-08-13 17:18:11,116] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M22_SJ.out.tab [2026-08-13 17:18:11,116] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M22_SJ.out.tab [2026-08-13 17:18:11,116] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M22_SJ.out.tab [2026-08-13 17:18:11,116] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M22_SJ.out.tab [2026-08-13 17:18:11,116] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M22_SJ.out.tab [2026-08-13 17:18:11,116] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M22_SJ.out.tab [2026-08-13 17:18:11,116] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G261_M22_SJ.out.tab [2026-08-13 17:18:11,116] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M22_SJ.out.tab [2026-08-13 17:18:13,370] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M22_marked_dup_metrics.txt [2026-08-13 17:18:13,372] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M22_marked_dup_metrics.txt [2026-08-13 17:18:13,373] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M22_marked_dup_metrics.txt [2026-08-13 17:18:13,373] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M22_marked_dup_metrics.txt [2026-08-13 17:18:13,378] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M22_marked_dup_metrics.txt [2026-08-13 17:18:13,413] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M22_metrics [2026-08-13 17:18:13,416] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M22_metrics [2026-08-13 17:18:13,416] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M22_metrics [2026-08-13 17:18:13,416] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M22_metrics [2026-08-13 17:18:13,421] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M22_metrics [2026-08-13 17:18:13,470] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261_M22_hist.pdf [2026-08-13 17:18:13,512] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:13,516] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:13,516] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:13,516] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:13,524] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:13,524] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:13,524] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:13,524] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:13,524] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:13,524] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:13,524] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:13,525] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:13,556] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:14,810] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:14,847] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:14,850] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:14,850] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:14,859] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:14,859] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:14,859] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:14,859] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:14,859] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:14,859] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:14,859] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:14,859] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:14,883] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M22_featureCounts.out [2026-08-13 17:18:15,778] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M22_metrics [2026-08-13 17:18:15,783] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M22_metrics [2026-08-13 17:18:15,791] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M22_metrics [2026-08-13 17:18:15,845] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M11-HNF6-fl-fl-KO_R2_001.fastq.gz [2026-08-13 17:18:15,847] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M11-HNF6-fl-fl-KO_R1_001.fastq.gz [2026-08-13 17:18:15,932] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M11_SJ.out.tab [2026-08-13 17:18:15,937] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M11_SJ.out.tab [2026-08-13 17:18:15,937] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M11_SJ.out.tab [2026-08-13 17:18:15,937] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M11_SJ.out.tab [2026-08-13 17:18:15,944] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M11_SJ.out.tab [2026-08-13 17:18:15,944] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M11_SJ.out.tab [2026-08-13 17:18:15,944] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M11_SJ.out.tab [2026-08-13 17:18:15,944] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M11_SJ.out.tab [2026-08-13 17:18:15,944] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M11_SJ.out.tab [2026-08-13 17:18:15,944] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M11_SJ.out.tab [2026-08-13 17:18:15,944] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M11_SJ.out.tab [2026-08-13 17:18:15,944] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M11_SJ.out.tab [2026-08-13 17:18:15,944] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G261_M11_SJ.out.tab [2026-08-13 17:18:15,944] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M11_SJ.out.tab [2026-08-13 17:18:18,006] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M11_marked_dup_metrics.txt [2026-08-13 17:18:18,010] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M11_marked_dup_metrics.txt [2026-08-13 17:18:18,011] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M11_marked_dup_metrics.txt [2026-08-13 17:18:18,011] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M11_marked_dup_metrics.txt [2026-08-13 17:18:18,016] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M11_marked_dup_metrics.txt [2026-08-13 17:18:18,039] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261_M11_hist.pdf [2026-08-13 17:18:18,062] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M11_metrics [2026-08-13 17:18:18,066] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M11_metrics [2026-08-13 17:18:18,066] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M11_metrics [2026-08-13 17:18:18,066] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M11_metrics [2026-08-13 17:18:18,072] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M11_metrics [2026-08-13 17:18:18,180] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:18,184] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:18,185] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:18,185] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:18,191] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:18,191] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:18,191] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:18,191] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:18,191] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:18,191] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:18,191] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:18,191] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:18,211] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:19,182] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:19,187] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:19,187] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:19,187] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:19,194] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:19,194] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:19,194] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:19,195] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:19,195] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:19,195] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:19,195] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:19,195] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:19,216] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M11_featureCounts.out [2026-08-13 17:18:20,132] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M11_metrics [2026-08-13 17:18:20,137] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M11_metrics [2026-08-13 17:18:20,143] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M11_metrics [2026-08-13 17:18:20,208] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M13-HNF6-fl-fl_R1_001.fastq.gz [2026-08-13 17:18:20,211] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M13-HNF6-fl-fl_R2_001.fastq.gz [2026-08-13 17:18:20,272] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M13_SJ.out.tab [2026-08-13 17:18:20,275] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M13_SJ.out.tab [2026-08-13 17:18:20,276] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M13_SJ.out.tab [2026-08-13 17:18:20,276] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M13_SJ.out.tab [2026-08-13 17:18:20,283] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M13_SJ.out.tab [2026-08-13 17:18:20,283] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M13_SJ.out.tab [2026-08-13 17:18:20,283] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M13_SJ.out.tab [2026-08-13 17:18:20,283] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M13_SJ.out.tab [2026-08-13 17:18:20,283] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M13_SJ.out.tab [2026-08-13 17:18:20,283] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M13_SJ.out.tab [2026-08-13 17:18:20,283] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M13_SJ.out.tab [2026-08-13 17:18:20,284] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M13_SJ.out.tab [2026-08-13 17:18:20,284] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G261_M13_SJ.out.tab [2026-08-13 17:18:20,284] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M13_SJ.out.tab [2026-08-13 17:18:22,539] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M13_marked_dup_metrics.txt [2026-08-13 17:18:22,544] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M13_marked_dup_metrics.txt [2026-08-13 17:18:22,545] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M13_marked_dup_metrics.txt [2026-08-13 17:18:22,545] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M13_marked_dup_metrics.txt [2026-08-13 17:18:22,554] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M13_marked_dup_metrics.txt [2026-08-13 17:18:22,591] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M13_metrics [2026-08-13 17:18:22,595] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M13_metrics [2026-08-13 17:18:22,596] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M13_metrics [2026-08-13 17:18:22,596] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M13_metrics [2026-08-13 17:18:22,601] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M13_metrics [2026-08-13 17:18:22,660] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261_M13_hist.pdf [2026-08-13 17:18:22,721] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:22,725] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:22,725] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:22,726] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:22,732] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:22,732] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:22,732] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:22,732] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:22,732] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:22,732] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:22,732] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:22,732] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:22,752] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:23,694] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:23,698] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:23,698] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:23,698] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:23,703] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:23,703] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:23,704] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:23,704] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:23,704] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:23,704] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:23,704] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:23,704] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:23,722] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M13_featureCounts.out [2026-08-13 17:18:24,622] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M13_metrics [2026-08-13 17:18:24,628] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M13_metrics [2026-08-13 17:18:24,634] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M13_metrics [2026-08-13 17:18:24,701] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M18-HNF6-fl-fl-KO_R2_001.fastq.gz [2026-08-13 17:18:24,703] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M18-HNF6-fl-fl-KO_R1_001.fastq.gz [2026-08-13 17:18:24,825] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M18_SJ.out.tab [2026-08-13 17:18:24,872] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M18_SJ.out.tab [2026-08-13 17:18:24,873] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M18_SJ.out.tab [2026-08-13 17:18:24,873] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M18_SJ.out.tab [2026-08-13 17:18:24,880] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M18_SJ.out.tab [2026-08-13 17:18:24,880] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M18_SJ.out.tab [2026-08-13 17:18:24,880] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M18_SJ.out.tab [2026-08-13 17:18:24,880] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M18_SJ.out.tab [2026-08-13 17:18:24,880] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M18_SJ.out.tab [2026-08-13 17:18:24,880] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M18_SJ.out.tab [2026-08-13 17:18:24,881] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M18_SJ.out.tab [2026-08-13 17:18:24,881] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M18_SJ.out.tab [2026-08-13 17:18:24,881] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G261_M18_SJ.out.tab [2026-08-13 17:18:24,881] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M18_SJ.out.tab [2026-08-13 17:18:27,151] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M18_marked_dup_metrics.txt [2026-08-13 17:18:27,154] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M18_marked_dup_metrics.txt [2026-08-13 17:18:27,155] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M18_marked_dup_metrics.txt [2026-08-13 17:18:27,155] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M18_marked_dup_metrics.txt [2026-08-13 17:18:27,161] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M18_marked_dup_metrics.txt [2026-08-13 17:18:27,224] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M18_metrics [2026-08-13 17:18:27,230] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M18_metrics [2026-08-13 17:18:27,231] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M18_metrics [2026-08-13 17:18:27,231] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M18_metrics [2026-08-13 17:18:27,238] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M18_metrics [2026-08-13 17:18:27,312] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261_M18_hist.pdf [2026-08-13 17:18:27,365] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:27,370] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:27,370] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:27,370] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:27,378] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:27,379] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:27,379] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:27,379] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:27,379] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:27,379] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:27,379] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:27,379] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:27,404] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:28,376] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:28,381] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:28,381] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:28,381] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:28,389] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:28,389] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:28,389] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:28,389] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:28,389] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:28,390] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:28,390] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:28,390] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:28,417] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M18_featureCounts.out [2026-08-13 17:18:29,335] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M18_metrics [2026-08-13 17:18:29,341] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M18_metrics [2026-08-13 17:18:29,349] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M18_metrics [2026-08-13 17:18:29,422] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M05-HNF6-fl-fl_R1_001.fastq.gz [2026-08-13 17:18:29,425] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M05-HNF6-fl-fl_R2_001.fastq.gz [2026-08-13 17:18:29,628] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M05_SJ.out.tab [2026-08-13 17:18:29,633] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M05_SJ.out.tab [2026-08-13 17:18:29,634] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M05_SJ.out.tab [2026-08-13 17:18:29,634] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M05_SJ.out.tab [2026-08-13 17:18:29,641] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M05_SJ.out.tab [2026-08-13 17:18:29,642] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M05_SJ.out.tab [2026-08-13 17:18:29,642] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M05_SJ.out.tab [2026-08-13 17:18:29,642] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M05_SJ.out.tab [2026-08-13 17:18:29,642] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M05_SJ.out.tab [2026-08-13 17:18:29,642] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M05_SJ.out.tab [2026-08-13 17:18:29,642] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M05_SJ.out.tab [2026-08-13 17:18:29,642] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M05_SJ.out.tab [2026-08-13 17:18:29,642] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G261_M05_SJ.out.tab [2026-08-13 17:18:29,642] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M05_SJ.out.tab [2026-08-13 17:18:31,872] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M05_marked_dup_metrics.txt [2026-08-13 17:18:31,877] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M05_marked_dup_metrics.txt [2026-08-13 17:18:31,877] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M05_marked_dup_metrics.txt [2026-08-13 17:18:31,878] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M05_marked_dup_metrics.txt [2026-08-13 17:18:31,887] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M05_marked_dup_metrics.txt [2026-08-13 17:18:31,928] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M05_metrics [2026-08-13 17:18:31,933] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M05_metrics [2026-08-13 17:18:31,934] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M05_metrics [2026-08-13 17:18:31,934] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M05_metrics [2026-08-13 17:18:31,942] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M05_metrics [2026-08-13 17:18:32,002] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261_M05_hist.pdf [2026-08-13 17:18:32,030] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:32,035] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:32,036] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:32,036] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:32,042] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:32,042] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:32,042] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:32,042] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:32,043] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:32,043] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:32,043] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:32,043] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:32,062] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:33,012] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:33,016] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:33,017] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:33,017] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:33,024] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:33,025] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:33,025] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:33,025] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:33,025] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:33,025] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:33,025] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:33,025] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:33,044] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M05_featureCounts.out [2026-08-13 17:18:33,998] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M05_metrics [2026-08-13 17:18:34,003] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M05_metrics [2026-08-13 17:18:34,009] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M05_metrics [2026-08-13 17:18:34,075] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M02-HNF6-fl-fl_R2_001.fastq.gz [2026-08-13 17:18:34,078] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M02-HNF6-fl-fl_R1_001.fastq.gz [2026-08-13 17:18:34,180] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M02_SJ.out.tab [2026-08-13 17:18:34,185] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M02_SJ.out.tab [2026-08-13 17:18:34,186] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M02_SJ.out.tab [2026-08-13 17:18:34,186] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M02_SJ.out.tab [2026-08-13 17:18:34,195] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M02_SJ.out.tab [2026-08-13 17:18:34,195] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M02_SJ.out.tab [2026-08-13 17:18:34,195] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M02_SJ.out.tab [2026-08-13 17:18:34,195] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M02_SJ.out.tab [2026-08-13 17:18:34,195] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M02_SJ.out.tab [2026-08-13 17:18:34,195] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M02_SJ.out.tab [2026-08-13 17:18:34,195] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M02_SJ.out.tab [2026-08-13 17:18:34,195] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M02_SJ.out.tab [2026-08-13 17:18:34,195] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G261_M02_SJ.out.tab [2026-08-13 17:18:34,195] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M02_SJ.out.tab [2026-08-13 17:18:36,186] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M02_marked_dup_metrics.txt [2026-08-13 17:18:36,191] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M02_marked_dup_metrics.txt [2026-08-13 17:18:36,191] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M02_marked_dup_metrics.txt [2026-08-13 17:18:36,192] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M02_marked_dup_metrics.txt [2026-08-13 17:18:36,199] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M02_marked_dup_metrics.txt [2026-08-13 17:18:36,221] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261_M02_hist.pdf [2026-08-13 17:18:36,242] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M02_metrics [2026-08-13 17:18:36,246] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M02_metrics [2026-08-13 17:18:36,247] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M02_metrics [2026-08-13 17:18:36,247] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M02_metrics [2026-08-13 17:18:36,254] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M02_metrics [2026-08-13 17:18:36,375] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:36,379] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:36,379] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:36,379] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:36,387] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:36,387] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:36,387] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:36,387] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:36,387] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:36,387] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:36,387] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:36,387] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:36,408] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:37,335] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:37,338] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:37,351] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:37,352] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:37,358] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:37,358] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:37,358] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:37,358] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:37,358] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:37,358] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:37,359] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:37,359] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:37,382] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M02_featureCounts.out [2026-08-13 17:18:38,271] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M02_metrics [2026-08-13 17:18:38,275] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M02_metrics [2026-08-13 17:18:38,280] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M02_metrics [2026-08-13 17:18:38,336] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M07-HNF6-fl-fl-KO_R1_001.fastq.gz [2026-08-13 17:18:38,339] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261-M07-HNF6-fl-fl-KO_R2_001.fastq.gz [2026-08-13 17:18:38,404] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M07_SJ.out.tab [2026-08-13 17:18:38,408] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M07_SJ.out.tab [2026-08-13 17:18:38,408] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M07_SJ.out.tab [2026-08-13 17:18:38,408] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M07_SJ.out.tab [2026-08-13 17:18:38,415] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M07_SJ.out.tab [2026-08-13 17:18:38,415] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M07_SJ.out.tab [2026-08-13 17:18:38,415] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M07_SJ.out.tab [2026-08-13 17:18:38,415] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M07_SJ.out.tab [2026-08-13 17:18:38,415] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M07_SJ.out.tab [2026-08-13 17:18:38,415] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M07_SJ.out.tab [2026-08-13 17:18:38,415] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M07_SJ.out.tab [2026-08-13 17:18:38,415] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M07_SJ.out.tab [2026-08-13 17:18:38,416] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G261_M07_SJ.out.tab [2026-08-13 17:18:38,416] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M07_SJ.out.tab [2026-08-13 17:18:40,393] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M07_marked_dup_metrics.txt [2026-08-13 17:18:40,397] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M07_marked_dup_metrics.txt [2026-08-13 17:18:40,397] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M07_marked_dup_metrics.txt [2026-08-13 17:18:40,397] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M07_marked_dup_metrics.txt [2026-08-13 17:18:40,404] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M07_marked_dup_metrics.txt [2026-08-13 17:18:40,430] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G261_M07_hist.pdf [2026-08-13 17:18:40,456] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M07_metrics [2026-08-13 17:18:40,459] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M07_metrics [2026-08-13 17:18:40,460] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M07_metrics [2026-08-13 17:18:40,460] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M07_metrics [2026-08-13 17:18:40,467] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M07_metrics [2026-08-13 17:18:40,544] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:40,548] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:40,548] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:40,548] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:40,553] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:40,553] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:40,553] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:40,553] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:40,553] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:40,554] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:40,554] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:40,554] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:40,572] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:41,526] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:41,531] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:41,531] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:41,531] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:41,537] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:41,537] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:41,537] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:41,538] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:41,538] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:41,538] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:41,538] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:41,538] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:41,557] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G261_M07_featureCounts.out [2026-08-13 17:18:42,517] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G261_M07_metrics [2026-08-13 17:18:42,522] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G261_M07_metrics [2026-08-13 17:18:42,542] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G261_M07_metrics [2026-08-13 17:18:42,614] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-13 17:18:42,618] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-13 17:18:42,622] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-13 17:18:42,636] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-13 17:18:42,639] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-13 17:18:42,645] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-13 17:18:42,659] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-08-13 17:18:42,662] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-08-13 17:18:42,680] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2026-08-13 17:18:42,683] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2026-08-13 17:18:42,687] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2026-08-13 17:18:42,701] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2026-08-13 17:18:42,704] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2026-08-13 17:18:42,723] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G261_RNAseq_G261_M10.o7167354 [2026-08-13 17:18:42,726] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G261_RNAseq_G261_M10.o7167354 [2026-08-13 17:18:42,731] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G261_RNAseq_G261_M10.o7167354 [2026-08-13 17:18:42,750] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G261_RNAseq_G261_M05.o7167349 [2026-08-13 17:18:42,754] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G261_RNAseq_G261_M05.o7167349 [2026-08-13 17:18:42,759] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G261_RNAseq_G261_M05.o7167349 [2026-08-13 17:18:42,780] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 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Step_03_G261_RNAseq_G261_M14.o7167358 [2026-08-13 17:18:42,856] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G261_RNAseq_G261_M14.o7167358 [2026-08-13 17:18:42,864] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G261_RNAseq_G261_M14.o7167358 [2026-08-13 17:18:42,882] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G261_RNAseq_G261_M03.o7167347 [2026-08-13 17:18:42,886] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G261_RNAseq_G261_M03.o7167347 [2026-08-13 17:18:42,892] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G261_RNAseq_G261_M03.o7167347 [2026-08-13 17:18:42,908] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 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because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M15.o7168603 [2026-08-13 17:18:57,673] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M15.o7168603 [2026-08-13 17:18:57,678] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M15.o7168603 [2026-08-13 17:18:57,714] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M12.o7168600 [2026-08-13 17:18:57,717] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M12.o7168600 [2026-08-13 17:18:57,717] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M12.o7168600 [2026-08-13 17:18:57,734] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M12.o7168600 [2026-08-13 17:18:57,741] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M12.o7168600 [2026-08-13 17:18:57,782] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M19.o7168607 [2026-08-13 17:18:57,785] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M19.o7168607 [2026-08-13 17:18:57,785] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M19.o7168607 [2026-08-13 17:18:57,785] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M19.o7168607 [2026-08-13 17:18:57,791] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M19.o7168607 [2026-08-13 17:18:57,791] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M19.o7168607 [2026-08-13 17:18:57,861] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M21.o7168609 [2026-08-13 17:18:57,868] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M21.o7168609 [2026-08-13 17:18:57,868] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M21.o7168609 [2026-08-13 17:18:57,868] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M21.o7168609 [2026-08-13 17:18:57,874] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M21.o7168609 [2026-08-13 17:18:57,907] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M03.o7168590 [2026-08-13 17:18:57,910] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M03.o7168590 [2026-08-13 17:18:57,911] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M03.o7168590 [2026-08-13 17:18:57,911] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M03.o7168590 [2026-08-13 17:18:57,916] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M03.o7168590 [2026-08-13 17:18:57,948] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M04.o7168592 [2026-08-13 17:18:57,952] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M04.o7168592 [2026-08-13 17:18:57,953] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M04.o7168592 [2026-08-13 17:18:57,953] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M04.o7168592 [2026-08-13 17:18:57,960] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M04.o7168592 [2026-08-13 17:18:58,002] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M16.o7168604 [2026-08-13 17:18:58,005] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M16.o7168604 [2026-08-13 17:18:58,005] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M16.o7168604 [2026-08-13 17:18:58,005] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M16.o7168604 [2026-08-13 17:18:58,010] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M16.o7168604 [2026-08-13 17:18:58,043] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M14.o7168602 [2026-08-13 17:18:58,046] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M14.o7168602 [2026-08-13 17:18:58,046] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M14.o7168602 [2026-08-13 17:18:58,046] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M14.o7168602 [2026-08-13 17:18:58,052] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M14.o7168602 [2026-08-13 17:18:58,097] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M08.o7168596 [2026-08-13 17:18:58,100] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M08.o7168596 [2026-08-13 17:18:58,100] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M08.o7168596 [2026-08-13 17:18:58,100] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M08.o7168596 [2026-08-13 17:18:58,106] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M08.o7168596 [2026-08-13 17:18:58,147] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M06.o7168594 [2026-08-13 17:18:58,151] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M06.o7168594 [2026-08-13 17:18:58,152] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M06.o7168594 [2026-08-13 17:18:58,152] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M06.o7168594 [2026-08-13 17:18:58,158] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M06.o7168594 [2026-08-13 17:18:58,200] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M17.o7168605 [2026-08-13 17:18:58,203] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M17.o7168605 [2026-08-13 17:18:58,204] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M17.o7168605 [2026-08-13 17:18:58,204] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M17.o7168605 [2026-08-13 17:18:58,210] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M17.o7168605 [2026-08-13 17:18:58,252] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M09.o7168597 [2026-08-13 17:18:58,256] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M09.o7168597 [2026-08-13 17:18:58,256] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M09.o7168597 [2026-08-13 17:18:58,257] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M09.o7168597 [2026-08-13 17:18:58,263] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M09.o7168597 [2026-08-13 17:18:58,306] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M05.o7168593 [2026-08-13 17:18:58,310] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M05.o7168593 [2026-08-13 17:18:58,311] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M05.o7168593 [2026-08-13 17:18:58,311] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M05.o7168593 [2026-08-13 17:18:58,318] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M05.o7168593 [2026-08-13 17:18:58,366] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M18.o7168606 [2026-08-13 17:18:58,370] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M18.o7168606 [2026-08-13 17:18:58,370] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M18.o7168606 [2026-08-13 17:18:58,370] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M18.o7168606 [2026-08-13 17:18:58,375] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M18.o7168606 [2026-08-13 17:18:58,414] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M01.o7168588 [2026-08-13 17:18:58,418] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M01.o7168588 [2026-08-13 17:18:58,419] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M01.o7168588 [2026-08-13 17:18:58,419] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M01.o7168588 [2026-08-13 17:18:58,426] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M01.o7168588 [2026-08-13 17:18:58,456] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M22.o7168610 [2026-08-13 17:18:58,460] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M22.o7168610 [2026-08-13 17:18:58,461] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M22.o7168610 [2026-08-13 17:18:58,461] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M22.o7168610 [2026-08-13 17:18:58,468] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M22.o7168610 [2026-08-13 17:18:58,504] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M07.o7168595 [2026-08-13 17:18:58,509] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M07.o7168595 [2026-08-13 17:18:58,509] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M07.o7168595 [2026-08-13 17:18:58,509] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M07.o7168595 [2026-08-13 17:18:58,516] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M07.o7168595 [2026-08-13 17:18:58,551] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M20.o7168608 [2026-08-13 17:18:58,555] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M20.o7168608 [2026-08-13 17:18:58,556] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M20.o7168608 [2026-08-13 17:18:58,556] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M20.o7168608 [2026-08-13 17:18:58,563] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M20.o7168608 [2026-08-13 17:18:58,602] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M11.o7168599 [2026-08-13 17:18:58,606] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M11.o7168599 [2026-08-13 17:18:58,606] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M11.o7168599 [2026-08-13 17:18:58,606] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M11.o7168599 [2026-08-13 17:18:58,612] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M11.o7168599 [2026-08-13 17:18:58,655] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M23.o7168611 [2026-08-13 17:18:58,660] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M23.o7168611 [2026-08-13 17:18:58,660] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M23.o7168611 [2026-08-13 17:18:58,660] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M23.o7168611 [2026-08-13 17:18:58,667] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G261_RNAseq_G261_M23.o7168611 [2026-08-13 17:18:58,690] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-08-13 17:18:58,695] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-08-13 17:18:58,702] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-08-13 17:18:58,718] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-08-13 17:18:58,721] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-08-13 17:18:58,732] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2026-08-13 17:18:58,768] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 17:18:58,773] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 17:18:58,773] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 17:18:58,773] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 17:18:58,780] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 17:18:58,780] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 17:18:58,780] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 17:18:58,780] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 17:18:58,780] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 17:18:58,780] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 17:18:58,780] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 17:18:58,781] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 17:18:58,781] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 17:18:58,781] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2026-08-13 17:18:59,608] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-13 17:18:59,612] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-13 17:18:59,613] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-13 17:18:59,613] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-13 17:18:59,619] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-13 17:18:59,670] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-13 17:18:59,675] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-13 17:18:59,675] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-13 17:18:59,675] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-13 17:18:59,682] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-13 17:19:02,357] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2026-08-13 17:19:02,375] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2026-08-13 17:19:02,379] multiqc [DEBUG ] No samples found: custom_content [2026-08-13 17:19:02,405] multiqc [DEBUG ] No samples found: ccs [2026-08-13 17:19:02,437] multiqc [DEBUG ] No samples found: ngsderive [2026-08-13 17:19:02,461] multiqc [DEBUG ] No samples found: purple [2026-08-13 17:19:02,470] multiqc [DEBUG ] No samples found: conpair [2026-08-13 17:19:02,499] multiqc [DEBUG ] No samples found: lima [2026-08-13 17:19:02,518] multiqc [DEBUG ] No samples found: peddy [2026-08-13 17:19:02,540] multiqc [DEBUG ] No samples found: somalier [2026-08-13 17:19:02,560] multiqc [DEBUG ] No samples found: methylQA [2026-08-13 17:19:02,599] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2026-08-13 17:19:02,600] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2026-08-13 17:19:02,600] multiqc [DEBUG ] No samples found: mosdepth [2026-08-13 17:19:02,609] multiqc [DEBUG ] No samples found: phantompeakqualtools [2026-08-13 17:19:02,629] multiqc [DEBUG ] No samples found: qualimap [2026-08-13 17:19:02,638] multiqc [DEBUG ] No samples found: preseq [2026-08-13 17:19:02,667] multiqc [DEBUG ] No samples found: quast [2026-08-13 17:19:02,682] multiqc [DEBUG ] No samples found: qorts [2026-08-13 17:19:02,709] multiqc [DEBUG ] No samples found: rna_seqc [2026-08-13 17:19:02,739] multiqc [DEBUG ] No samples found: rockhopper [2026-08-13 17:19:02,747] multiqc [DEBUG ] No samples found: rsem [2026-08-13 17:19:02,821] multiqc.modules.rseqc.rseqc [INFO ] Found 23 infer_experiment reports [2026-08-13 17:19:02,849] multiqc [DEBUG ] No samples found: busco [2026-08-13 17:19:02,856] multiqc [DEBUG ] No samples found: bustools [2026-08-13 17:19:02,862] multiqc [DEBUG ] No samples found: goleft_indexcov [2026-08-13 17:19:02,867] multiqc [DEBUG ] No samples found: gffcompare [2026-08-13 17:19:02,871] multiqc [DEBUG ] No samples found: disambiguate [2026-08-13 17:19:02,876] multiqc [DEBUG ] No samples found: supernova [2026-08-13 17:19:02,891] multiqc [DEBUG ] No samples found: deeptools [2026-08-13 17:19:02,900] multiqc [DEBUG ] No samples found: sargasso [2026-08-13 17:19:02,905] multiqc [DEBUG ] No samples found: verifybamid [2026-08-13 17:19:02,911] multiqc [DEBUG ] No samples found: mirtrace [2026-08-13 17:19:02,916] multiqc [DEBUG ] No samples found: happy [2026-08-13 17:19:02,921] multiqc [DEBUG ] No samples found: mirtop [2026-08-13 17:19:02,928] multiqc [DEBUG ] No samples found: sambamba [2026-08-13 17:19:02,946] multiqc [DEBUG ] No samples found: homer [2026-08-13 17:19:02,964] multiqc [DEBUG ] No samples found: hops [2026-08-13 17:19:02,979] multiqc [DEBUG ] No samples found: macs2 [2026-08-13 17:19:02,989] multiqc [DEBUG ] No samples found: theta2 [2026-08-13 17:19:03,012] multiqc [DEBUG ] No samples found: snpeff [2026-08-13 17:19:03,040] multiqc [DEBUG ] No samples found: gatk [2026-08-13 17:19:03,050] multiqc [DEBUG ] No samples found: htseq [2026-08-13 17:19:03,066] multiqc [DEBUG ] No samples found: bcftools [2026-08-13 17:19:03,075] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G261_M20_sorted [2026-08-13 17:19:03,078] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G261_M14_sorted [2026-08-13 17:19:03,081] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G261_M19_sorted [2026-08-13 17:19:03,084] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G261_M16_sorted [2026-08-13 17:19:03,086] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G261_M03_sorted [2026-08-13 17:19:03,089] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G261_M08_sorted [2026-08-13 17:19:03,092] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G261_M21_sorted [2026-08-13 17:19:03,095] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G261_M23_sorted [2026-08-13 17:19:03,099] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G261_M10_sorted [2026-08-13 17:19:03,102] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G261_M15_sorted [2026-08-13 17:19:03,105] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G261_M12_sorted [2026-08-13 17:19:03,108] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G261_M17_sorted [2026-08-13 17:19:03,111] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G261_M04_sorted [2026-08-13 17:19:03,114] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G261_M09_sorted [2026-08-13 17:19:03,117] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G261_M01_sorted [2026-08-13 17:19:03,120] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G261_M06_sorted [2026-08-13 17:19:03,123] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G261_M22_sorted [2026-08-13 17:19:03,126] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G261_M11_sorted [2026-08-13 17:19:03,127] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G261_M13_sorted [2026-08-13 17:19:03,129] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G261_M18_sorted [2026-08-13 17:19:03,130] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G261_M05_sorted [2026-08-13 17:19:03,132] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G261_M02_sorted [2026-08-13 17:19:03,133] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G261_M07_sorted [2026-08-13 17:19:03,133] multiqc.modules.featureCounts.feature_counts [INFO ] Found 23 reports [2026-08-13 17:19:03,180] multiqc [DEBUG ] No samples found: fgbio [2026-08-13 17:19:03,260] multiqc [DEBUG ] No samples found: dragen [2026-08-13 17:19:03,278] multiqc [DEBUG ] No samples found: dedup [2026-08-13 17:19:03,303] multiqc [DEBUG ] No samples found: damageprofiler [2026-08-13 17:19:03,491] multiqc [DEBUG ] No samples found: biobambam2 [2026-08-13 17:19:03,516] multiqc [DEBUG ] No samples found: jcvi [2026-08-13 17:19:03,525] multiqc [DEBUG ] No samples found: mtnucratio [2026-08-13 17:19:04,515] multiqc.modules.picard.picard [INFO ] Found 23 InsertSizeMetrics reports [2026-08-13 17:19:04,539] multiqc.modules.picard.picard [INFO ] Found 23 MarkDuplicates reports [2026-08-13 17:19:04,589] multiqc.modules.picard.picard [INFO ] Found 23 RnaSeqMetrics reports [2026-08-13 17:19:04,614] multiqc [DEBUG ] No samples found: vep [2026-08-13 17:19:04,635] multiqc [DEBUG ] No samples found: sentieon [2026-08-13 17:19:04,660] multiqc [DEBUG ] No samples found: prokka [2026-08-13 17:19:04,681] multiqc [DEBUG ] No samples found: qc3C [2026-08-13 17:19:04,699] multiqc [DEBUG ] No samples found: nanostat [2026-08-13 17:19:04,709] multiqc [DEBUG ] No samples found: samblaster [2026-08-13 17:19:04,826] multiqc.modules.samtools.samtools [INFO ] Found 69 flagstat reports [2026-08-13 17:19:04,848] multiqc [DEBUG ] No samples found: sexdeterrmine [2026-08-13 17:19:04,856] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2026-08-13 17:19:04,866] multiqc [DEBUG ] No samples found: bamtools [2026-08-13 17:19:04,872] multiqc [DEBUG ] No samples found: jellyfish [2026-08-13 17:19:04,882] multiqc [DEBUG ] No samples found: vcftools [2026-08-13 17:19:04,902] multiqc [DEBUG ] No samples found: longranger [2026-08-13 17:19:04,927] multiqc [DEBUG ] No samples found: stacks [2026-08-13 17:19:04,957] multiqc [DEBUG ] No samples found: varscan2 [2026-08-13 17:19:04,984] multiqc [DEBUG ] No samples found: snippy [2026-08-13 17:19:05,027] multiqc [DEBUG ] No samples found: bbmap [2026-08-13 17:19:05,061] multiqc [DEBUG ] No samples found: bismark [2026-08-13 17:19:05,084] multiqc [DEBUG ] No samples found: biscuit [2026-08-13 17:19:05,094] multiqc [DEBUG ] No samples found: hicexplorer [2026-08-13 17:19:05,100] multiqc [DEBUG ] No samples found: hicup [2026-08-13 17:19:05,106] multiqc [DEBUG ] No samples found: hicpro [2026-08-13 17:19:05,111] multiqc [DEBUG ] No samples found: salmon [2026-08-13 17:19:05,124] multiqc [DEBUG ] No samples found: kallisto [2026-08-13 17:19:05,149] multiqc [DEBUG ] No samples found: slamdunk [2026-08-13 17:19:07,559] multiqc.modules.star.star [INFO ] Found 23 reports and 23 gene count files [2026-08-13 17:19:07,587] multiqc [DEBUG ] No samples found: hisat2 [2026-08-13 17:19:07,614] multiqc [DEBUG ] No samples found: tophat [2026-08-13 17:19:07,639] multiqc [DEBUG ] No samples found: bowtie2 [2026-08-13 17:19:07,649] multiqc [DEBUG ] No samples found: bowtie1 [2026-08-13 17:19:07,674] multiqc [DEBUG ] No samples found: snpsplit [2026-08-13 17:19:07,695] multiqc [DEBUG ] No samples found: odgi [2026-08-13 17:19:07,715] multiqc [DEBUG ] No samples found: pangolin [2026-08-13 17:19:07,723] multiqc [DEBUG ] No samples found: kat [2026-08-13 17:19:07,730] multiqc [DEBUG ] No samples found: leehom [2026-08-13 17:19:07,735] multiqc [DEBUG ] No samples found: adapterRemoval [2026-08-13 17:19:07,739] multiqc [DEBUG ] No samples found: clipandmerge [2026-08-13 17:19:07,744] multiqc [DEBUG ] No samples found: cutadapt [2026-08-13 17:19:07,749] multiqc [DEBUG ] No samples found: flexbar [2026-08-13 17:19:07,772] multiqc [DEBUG ] No samples found: kaiju [2026-08-13 17:19:07,788] multiqc [DEBUG ] No samples found: kraken [2026-08-13 17:19:07,794] multiqc [DEBUG ] No samples found: malt [2026-08-13 17:19:07,821] multiqc [DEBUG ] No samples found: trimmomatic [2026-08-13 17:19:07,852] multiqc [DEBUG ] No samples found: sickle [2026-08-13 17:19:07,861] multiqc [DEBUG ] No samples found: skewer [2026-08-13 17:19:07,868] multiqc [DEBUG ] No samples found: sortmerna [2026-08-13 17:19:07,874] multiqc [DEBUG ] No samples found: biobloomtools [2026-08-13 17:19:07,889] multiqc [DEBUG ] No samples found: fastq_screen [2026-08-13 17:19:07,897] multiqc [DEBUG ] No samples found: afterqc [2026-08-13 17:19:07,952] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 17:19:07,973] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 17:19:08,013] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 17:19:08,036] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 17:19:08,060] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 17:19:08,080] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 17:19:08,090] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 17:19:08,114] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 17:19:08,127] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 17:19:08,146] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 17:19:08,176] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 17:19:08,192] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 17:19:08,214] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 17:19:08,232] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 17:19:08,247] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 17:19:08,264] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 17:19:08,287] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 17:19:08,309] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 17:19:08,335] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 17:19:08,356] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 17:19:08,369] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 17:19:08,390] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 17:19:08,413] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-13 17:19:08,414] multiqc.modules.fastp.fastp [INFO ] Found 23 reports [2026-08-13 17:19:18,878] multiqc.modules.fastqc.fastqc [INFO ] Found 46 reports [2026-08-13 17:19:18,880] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2026-08-13 17:19:22,433] multiqc [DEBUG ] No samples found: pychopper [2026-08-13 17:19:22,454] multiqc [DEBUG ] No samples found: pycoqc [2026-08-13 17:19:22,482] multiqc [DEBUG ] No samples found: minionqc [2026-08-13 17:19:22,510] multiqc [DEBUG ] No samples found: multivcfanalyzer [2026-08-13 17:19:22,535] multiqc [DEBUG ] No samples found: clusterflow [2026-08-13 17:19:22,554] multiqc [DEBUG ] No samples found: bcl2fastq [2026-08-13 17:19:22,573] multiqc [DEBUG ] No samples found: bclconvert [2026-08-13 17:19:22,596] multiqc [DEBUG ] No samples found: interop [2026-08-13 17:19:22,620] multiqc [DEBUG ] No samples found: ivar [2026-08-13 17:19:22,637] multiqc [DEBUG ] No samples found: flash [2026-08-13 17:19:22,656] multiqc [DEBUG ] No samples found: seqyclean [2026-08-13 17:19:22,665] multiqc [DEBUG ] No samples found: optitype [2026-08-13 17:19:22,789] multiqc [INFO ] Compressing plot data [2026-08-13 17:19:25,168] multiqc [INFO ] Report : multiqc_report.html [2026-08-13 17:19:25,168] multiqc [INFO ] Data : multiqc_data [2026-08-13 17:19:25,168] multiqc [DEBUG ] Moving data file from '/scratch/tmpeeuva5x8/multiqc_data' to '/projectnb/wax-dk/max/G260_G264_RNAseq/G261_RNAseq/Scripts/99_final_summary/G261_RNAseq_multiqc_report/multiqc_data' [2026-08-13 17:19:25,820] multiqc [INFO ] MultiQC complete [2026-08-13 17:19:25,820] multiqc [WARNING] 1 flat-image plot used in the report due to large sample numbers