[2026-07-02 14:24:31,127] multiqc [DEBUG ] This is MultiQC v1.11 [2026-07-02 14:24:31,129] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2026-07-02 14:24:31,132] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2026-07-02 14:24:31,133] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2026-07-02 14:24:31,135] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/G259_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2026-07-02 14:24:31,136] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2026-07-02 14:24:31,136] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2026-07-02 14:24:31,136] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G259_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G259_RNAseq/SAMPLES /projectnb2/wax-dk/max/G259_RNAseq/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G259_RNAseq/Scripts/06_CollectMetrics/ [2026-07-02 14:24:31,584] multiqc [WARNING] MultiQC Version v1.35 now available! [2026-07-02 14:24:31,585] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G259_RNAseq/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G259_RNAseq/SAMPLES /projectnb2/wax-dk/max/G259_RNAseq/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G259_RNAseq/Scripts/06_CollectMetrics/ [2026-07-02 14:24:31,585] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G259_RNAseq/Scripts/99_final_summary/G259_RNAseq_multiqc_report [2026-07-02 14:24:31,585] multiqc [DEBUG ] Template : default [2026-07-02 14:24:31,585] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2026-07-02 14:24:31,585] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2026-07-02 14:24:31,586] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpdyv02yuu [2026-07-02 14:24:31,944] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G259_RNAseq/SAMPLES [2026-07-02 14:24:31,944] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G259_RNAseq/Scripts/03_FASTQC [2026-07-02 14:24:31,945] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G259_RNAseq/Scripts/06_CollectMetrics [2026-07-02 14:24:32,421] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: M880_WT_R2.fastq.gz [2026-07-02 14:24:32,421] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: M880_WT_R1.fastq.gz [2026-07-02 14:24:32,622] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M07_SJ.out.tab [2026-07-02 14:24:32,630] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M07_SJ.out.tab [2026-07-02 14:24:32,631] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M07_SJ.out.tab [2026-07-02 14:24:32,631] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M07_SJ.out.tab [2026-07-02 14:24:32,643] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M07_SJ.out.tab [2026-07-02 14:24:32,643] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M07_SJ.out.tab [2026-07-02 14:24:32,643] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M07_SJ.out.tab [2026-07-02 14:24:32,643] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M07_SJ.out.tab [2026-07-02 14:24:32,643] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M07_SJ.out.tab [2026-07-02 14:24:32,643] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M07_SJ.out.tab [2026-07-02 14:24:32,643] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M07_SJ.out.tab [2026-07-02 14:24:32,643] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M07_SJ.out.tab [2026-07-02 14:24:32,643] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G259_M07_SJ.out.tab [2026-07-02 14:24:32,643] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M07_SJ.out.tab [2026-07-02 14:24:35,366] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M07_marked_dup_metrics.txt [2026-07-02 14:24:35,373] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M07_marked_dup_metrics.txt [2026-07-02 14:24:35,374] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M07_marked_dup_metrics.txt [2026-07-02 14:24:35,374] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M07_marked_dup_metrics.txt [2026-07-02 14:24:35,386] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M07_marked_dup_metrics.txt [2026-07-02 14:24:35,434] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M07_metrics [2026-07-02 14:24:35,440] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M07_metrics [2026-07-02 14:24:35,441] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M07_metrics [2026-07-02 14:24:35,441] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M07_metrics [2026-07-02 14:24:35,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M07_metrics [2026-07-02 14:24:35,531] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G259_M07_hist.pdf [2026-07-02 14:24:35,605] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:35,611] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:35,611] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:35,612] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:35,623] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:35,623] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:35,623] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:35,623] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:35,623] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:35,623] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:35,623] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:35,623] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:35,648] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:36,621] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:36,626] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:36,626] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:36,627] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:36,634] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:36,634] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:36,634] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:36,634] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:36,634] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:36,635] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:36,635] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:36,635] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:36,654] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M07_featureCounts.out [2026-07-02 14:24:37,590] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M07_metrics [2026-07-02 14:24:37,597] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M07_metrics [2026-07-02 14:24:37,607] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M07_metrics [2026-07-02 14:24:37,709] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: L1376_EKRN230002960-1A_HNHGGDSX5_L3_2.fq.gz [2026-07-02 14:24:37,709] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: L1376_EKRN230002960-1A_HNHGGDSX5_L3_1.fq.gz [2026-07-02 14:24:37,832] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M15_SJ.out.tab [2026-07-02 14:24:37,837] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M15_SJ.out.tab [2026-07-02 14:24:37,837] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M15_SJ.out.tab [2026-07-02 14:24:37,837] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M15_SJ.out.tab [2026-07-02 14:24:37,845] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M15_SJ.out.tab [2026-07-02 14:24:37,845] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M15_SJ.out.tab [2026-07-02 14:24:37,846] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M15_SJ.out.tab [2026-07-02 14:24:37,846] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M15_SJ.out.tab [2026-07-02 14:24:37,846] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M15_SJ.out.tab [2026-07-02 14:24:37,846] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M15_SJ.out.tab [2026-07-02 14:24:37,846] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M15_SJ.out.tab [2026-07-02 14:24:37,846] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M15_SJ.out.tab [2026-07-02 14:24:37,846] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G259_M15_SJ.out.tab [2026-07-02 14:24:37,846] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M15_SJ.out.tab [2026-07-02 14:24:40,718] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M15_marked_dup_metrics.txt [2026-07-02 14:24:40,723] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M15_marked_dup_metrics.txt [2026-07-02 14:24:40,724] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M15_marked_dup_metrics.txt [2026-07-02 14:24:40,724] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M15_marked_dup_metrics.txt [2026-07-02 14:24:40,734] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M15_marked_dup_metrics.txt [2026-07-02 14:24:40,795] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M15_metrics [2026-07-02 14:24:40,800] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M15_metrics [2026-07-02 14:24:40,801] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M15_metrics [2026-07-02 14:24:40,816] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M15_metrics [2026-07-02 14:24:40,829] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M15_metrics [2026-07-02 14:24:40,884] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G259_M15_hist.pdf [2026-07-02 14:24:40,952] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:40,957] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:40,958] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:40,958] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:40,967] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:40,967] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:40,967] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:40,967] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:40,967] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:40,967] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:40,968] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:40,968] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:40,993] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:41,998] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:42,004] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:42,004] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:42,004] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:42,012] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:42,012] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:42,012] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:42,013] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:42,013] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:42,013] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:42,013] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:42,013] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:42,032] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M15_featureCounts.out [2026-07-02 14:24:42,957] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M15_metrics [2026-07-02 14:24:42,960] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M15_metrics [2026-07-02 14:24:42,967] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M15_metrics [2026-07-02 14:24:43,044] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: L1375_EKRN230002959-1A_HNHTCDSX5_L1_1.fq.gz [2026-07-02 14:24:43,045] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: L1375_EKRN230002959-1A_HNHTCDSX5_L1_2.fq.gz [2026-07-02 14:24:43,195] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M16_SJ.out.tab [2026-07-02 14:24:43,202] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M16_SJ.out.tab [2026-07-02 14:24:43,204] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M16_SJ.out.tab [2026-07-02 14:24:43,204] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M16_SJ.out.tab [2026-07-02 14:24:43,214] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M16_SJ.out.tab [2026-07-02 14:24:43,214] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M16_SJ.out.tab [2026-07-02 14:24:43,214] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M16_SJ.out.tab [2026-07-02 14:24:43,215] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M16_SJ.out.tab [2026-07-02 14:24:43,215] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M16_SJ.out.tab [2026-07-02 14:24:43,215] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M16_SJ.out.tab [2026-07-02 14:24:43,215] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M16_SJ.out.tab [2026-07-02 14:24:43,215] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M16_SJ.out.tab [2026-07-02 14:24:43,215] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G259_M16_SJ.out.tab [2026-07-02 14:24:43,215] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M16_SJ.out.tab [2026-07-02 14:24:45,763] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M16_marked_dup_metrics.txt [2026-07-02 14:24:45,768] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M16_marked_dup_metrics.txt [2026-07-02 14:24:45,768] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M16_marked_dup_metrics.txt [2026-07-02 14:24:45,768] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M16_marked_dup_metrics.txt [2026-07-02 14:24:45,776] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M16_marked_dup_metrics.txt [2026-07-02 14:24:45,795] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G259_M16_hist.pdf [2026-07-02 14:24:45,815] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M16_metrics [2026-07-02 14:24:45,818] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M16_metrics [2026-07-02 14:24:45,833] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M16_metrics [2026-07-02 14:24:45,833] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M16_metrics [2026-07-02 14:24:45,841] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M16_metrics [2026-07-02 14:24:45,935] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:45,940] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:45,941] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:45,941] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:45,949] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:45,949] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:45,949] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:45,949] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:45,949] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:45,949] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:45,949] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:45,949] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:45,970] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:46,943] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:46,949] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:46,950] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:46,950] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:46,959] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:46,959] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:46,959] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:46,959] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:46,959] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:46,959] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:46,959] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:46,959] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:46,980] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M16_featureCounts.out [2026-07-02 14:24:47,981] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M16_metrics [2026-07-02 14:24:47,984] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M16_metrics [2026-07-02 14:24:47,990] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M16_metrics [2026-07-02 14:24:48,078] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: M885_WT_R2.fastq.gz [2026-07-02 14:24:48,079] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: M885_WT_R1.fastq.gz [2026-07-02 14:24:48,143] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M08_SJ.out.tab [2026-07-02 14:24:48,148] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M08_SJ.out.tab [2026-07-02 14:24:48,148] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M08_SJ.out.tab [2026-07-02 14:24:48,148] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M08_SJ.out.tab [2026-07-02 14:24:48,157] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M08_SJ.out.tab [2026-07-02 14:24:48,157] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M08_SJ.out.tab [2026-07-02 14:24:48,157] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M08_SJ.out.tab [2026-07-02 14:24:48,157] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M08_SJ.out.tab [2026-07-02 14:24:48,157] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M08_SJ.out.tab [2026-07-02 14:24:48,157] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M08_SJ.out.tab [2026-07-02 14:24:48,158] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M08_SJ.out.tab [2026-07-02 14:24:48,158] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M08_SJ.out.tab [2026-07-02 14:24:48,158] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G259_M08_SJ.out.tab [2026-07-02 14:24:48,158] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M08_SJ.out.tab [2026-07-02 14:24:50,998] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M08_marked_dup_metrics.txt [2026-07-02 14:24:51,003] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M08_marked_dup_metrics.txt [2026-07-02 14:24:51,016] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M08_marked_dup_metrics.txt [2026-07-02 14:24:51,017] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M08_marked_dup_metrics.txt [2026-07-02 14:24:51,023] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M08_marked_dup_metrics.txt [2026-07-02 14:24:51,057] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M08_metrics [2026-07-02 14:24:51,061] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M08_metrics [2026-07-02 14:24:51,061] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M08_metrics [2026-07-02 14:24:51,061] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M08_metrics [2026-07-02 14:24:51,067] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M08_metrics [2026-07-02 14:24:51,115] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G259_M08_hist.pdf [2026-07-02 14:24:51,177] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:51,181] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:51,182] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:51,182] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:51,189] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:51,189] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:51,189] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:51,189] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:51,189] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:51,189] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:51,189] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:51,189] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:51,209] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:52,189] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:52,194] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:52,194] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:52,195] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:52,205] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:52,205] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:52,205] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:52,205] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:52,205] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:52,205] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:52,205] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:52,205] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:52,227] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M08_featureCounts.out [2026-07-02 14:24:53,140] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M08_metrics [2026-07-02 14:24:53,146] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M08_metrics [2026-07-02 14:24:53,154] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M08_metrics [2026-07-02 14:24:53,228] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: M886_WT_R2.fastq.gz [2026-07-02 14:24:53,229] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: M886_WT_R1.fastq.gz [2026-07-02 14:24:53,401] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M09_SJ.out.tab [2026-07-02 14:24:53,406] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M09_SJ.out.tab [2026-07-02 14:24:53,407] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M09_SJ.out.tab [2026-07-02 14:24:53,407] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M09_SJ.out.tab [2026-07-02 14:24:53,416] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M09_SJ.out.tab [2026-07-02 14:24:53,417] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M09_SJ.out.tab [2026-07-02 14:24:53,417] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M09_SJ.out.tab [2026-07-02 14:24:53,417] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M09_SJ.out.tab [2026-07-02 14:24:53,417] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M09_SJ.out.tab [2026-07-02 14:24:53,417] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M09_SJ.out.tab [2026-07-02 14:24:53,417] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M09_SJ.out.tab [2026-07-02 14:24:53,417] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M09_SJ.out.tab [2026-07-02 14:24:53,417] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G259_M09_SJ.out.tab [2026-07-02 14:24:53,417] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M09_SJ.out.tab [2026-07-02 14:24:56,900] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M09_marked_dup_metrics.txt [2026-07-02 14:24:56,938] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M09_marked_dup_metrics.txt [2026-07-02 14:24:56,941] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M09_marked_dup_metrics.txt [2026-07-02 14:24:56,942] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M09_marked_dup_metrics.txt [2026-07-02 14:24:57,037] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M09_marked_dup_metrics.txt [2026-07-02 14:24:57,226] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G259_M09_hist.pdf [2026-07-02 14:24:57,304] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M09_metrics [2026-07-02 14:24:57,340] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M09_metrics [2026-07-02 14:24:57,344] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M09_metrics [2026-07-02 14:24:57,344] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M09_metrics [2026-07-02 14:24:57,376] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M09_metrics [2026-07-02 14:24:57,503] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:57,507] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:57,508] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:57,508] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:57,515] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:57,515] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:57,516] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:57,516] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:57,516] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:57,516] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:57,516] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:57,516] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:57,542] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:58,531] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:58,536] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:58,537] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:58,537] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:58,544] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:58,544] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:58,544] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:58,545] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:58,545] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:58,545] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:58,545] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:58,545] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:58,564] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M09_featureCounts.out [2026-07-02 14:24:59,497] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M09_metrics [2026-07-02 14:24:59,501] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M09_metrics [2026-07-02 14:24:59,507] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M09_metrics [2026-07-02 14:24:59,609] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F901_WT_R1.fastq.gz [2026-07-02 14:24:59,610] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F901_WT_R2.fastq.gz [2026-07-02 14:24:59,689] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M01_SJ.out.tab [2026-07-02 14:24:59,694] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M01_SJ.out.tab [2026-07-02 14:24:59,695] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M01_SJ.out.tab [2026-07-02 14:24:59,695] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M01_SJ.out.tab [2026-07-02 14:24:59,704] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M01_SJ.out.tab [2026-07-02 14:24:59,704] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M01_SJ.out.tab [2026-07-02 14:24:59,704] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M01_SJ.out.tab [2026-07-02 14:24:59,704] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M01_SJ.out.tab [2026-07-02 14:24:59,704] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M01_SJ.out.tab [2026-07-02 14:24:59,704] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M01_SJ.out.tab [2026-07-02 14:24:59,704] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M01_SJ.out.tab [2026-07-02 14:24:59,704] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M01_SJ.out.tab [2026-07-02 14:24:59,704] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G259_M01_SJ.out.tab [2026-07-02 14:24:59,704] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M01_SJ.out.tab [2026-07-02 14:25:02,356] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M01_marked_dup_metrics.txt [2026-07-02 14:25:02,363] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M01_marked_dup_metrics.txt [2026-07-02 14:25:02,364] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M01_marked_dup_metrics.txt [2026-07-02 14:25:02,364] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M01_marked_dup_metrics.txt [2026-07-02 14:25:02,374] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M01_marked_dup_metrics.txt [2026-07-02 14:25:02,407] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G259_M01_hist.pdf [2026-07-02 14:25:02,429] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M01_metrics [2026-07-02 14:25:02,433] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M01_metrics [2026-07-02 14:25:02,433] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M01_metrics [2026-07-02 14:25:02,433] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M01_metrics [2026-07-02 14:25:02,442] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M01_metrics [2026-07-02 14:25:02,548] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:02,552] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:02,553] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:02,553] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:02,562] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:02,562] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:02,562] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:02,562] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:02,562] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:02,562] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:02,562] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:02,562] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:02,583] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:03,543] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:03,549] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:03,550] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:03,550] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:03,557] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:03,557] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:03,557] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:03,557] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:03,557] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:03,557] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:03,557] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:03,557] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:03,577] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M01_featureCounts.out [2026-07-02 14:25:04,516] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M01_metrics [2026-07-02 14:25:04,522] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M01_metrics [2026-07-02 14:25:04,530] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M01_metrics [2026-07-02 14:25:04,624] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F903_WT_R2.fastq.gz [2026-07-02 14:25:04,625] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F903_WT_R1.fastq.gz [2026-07-02 14:25:04,818] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M02_SJ.out.tab [2026-07-02 14:25:04,822] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M02_SJ.out.tab [2026-07-02 14:25:04,823] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M02_SJ.out.tab [2026-07-02 14:25:04,823] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M02_SJ.out.tab [2026-07-02 14:25:04,830] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M02_SJ.out.tab [2026-07-02 14:25:04,830] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M02_SJ.out.tab [2026-07-02 14:25:04,830] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M02_SJ.out.tab [2026-07-02 14:25:04,830] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M02_SJ.out.tab [2026-07-02 14:25:04,830] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M02_SJ.out.tab [2026-07-02 14:25:04,830] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M02_SJ.out.tab [2026-07-02 14:25:04,830] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M02_SJ.out.tab [2026-07-02 14:25:04,830] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M02_SJ.out.tab [2026-07-02 14:25:04,830] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G259_M02_SJ.out.tab [2026-07-02 14:25:04,830] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M02_SJ.out.tab [2026-07-02 14:25:07,674] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M02_marked_dup_metrics.txt [2026-07-02 14:25:07,679] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M02_marked_dup_metrics.txt [2026-07-02 14:25:07,680] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M02_marked_dup_metrics.txt [2026-07-02 14:25:07,680] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M02_marked_dup_metrics.txt [2026-07-02 14:25:07,687] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M02_marked_dup_metrics.txt [2026-07-02 14:25:07,732] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M02_metrics [2026-07-02 14:25:07,736] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M02_metrics [2026-07-02 14:25:07,736] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M02_metrics [2026-07-02 14:25:07,736] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M02_metrics [2026-07-02 14:25:07,742] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M02_metrics [2026-07-02 14:25:07,804] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G259_M02_hist.pdf [2026-07-02 14:25:07,837] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:07,842] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:07,843] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:07,843] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:07,849] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:07,849] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:07,849] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:07,849] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:07,849] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:07,849] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:07,849] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:07,850] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:07,870] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:09,206] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:09,211] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:09,212] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:09,212] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:09,219] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:09,219] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:09,220] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:09,220] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:09,220] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:09,220] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:09,220] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:09,220] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:09,239] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M02_featureCounts.out [2026-07-02 14:25:10,206] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M02_metrics [2026-07-02 14:25:10,209] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M02_metrics [2026-07-02 14:25:10,214] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M02_metrics [2026-07-02 14:25:10,272] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F906_WT_R2.fastq.gz [2026-07-02 14:25:10,273] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F906_WT_R1.fastq.gz [2026-07-02 14:25:10,475] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M03_SJ.out.tab [2026-07-02 14:25:10,480] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M03_SJ.out.tab [2026-07-02 14:25:10,480] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M03_SJ.out.tab [2026-07-02 14:25:10,480] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M03_SJ.out.tab [2026-07-02 14:25:10,487] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M03_SJ.out.tab [2026-07-02 14:25:10,487] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M03_SJ.out.tab [2026-07-02 14:25:10,487] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M03_SJ.out.tab [2026-07-02 14:25:10,487] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M03_SJ.out.tab [2026-07-02 14:25:10,487] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M03_SJ.out.tab [2026-07-02 14:25:10,487] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M03_SJ.out.tab [2026-07-02 14:25:10,487] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M03_SJ.out.tab [2026-07-02 14:25:10,488] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M03_SJ.out.tab [2026-07-02 14:25:10,488] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G259_M03_SJ.out.tab [2026-07-02 14:25:10,488] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M03_SJ.out.tab [2026-07-02 14:25:13,147] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M03_marked_dup_metrics.txt [2026-07-02 14:25:13,150] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M03_marked_dup_metrics.txt [2026-07-02 14:25:13,151] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M03_marked_dup_metrics.txt [2026-07-02 14:25:13,151] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M03_marked_dup_metrics.txt [2026-07-02 14:25:13,156] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M03_marked_dup_metrics.txt [2026-07-02 14:25:13,206] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M03_metrics [2026-07-02 14:25:13,212] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M03_metrics [2026-07-02 14:25:13,212] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M03_metrics [2026-07-02 14:25:13,213] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M03_metrics [2026-07-02 14:25:13,222] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M03_metrics [2026-07-02 14:25:13,273] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G259_M03_hist.pdf [2026-07-02 14:25:13,329] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:13,333] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:13,334] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:13,334] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:13,342] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:13,342] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:13,342] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:13,342] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:13,342] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:13,342] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:13,342] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:13,342] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:13,363] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:14,363] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:14,368] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:14,369] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:14,369] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:14,378] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:14,378] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:14,378] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:14,378] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:14,378] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:14,378] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:14,378] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:14,378] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:14,398] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M03_featureCounts.out [2026-07-02 14:25:15,323] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M03_metrics [2026-07-02 14:25:15,328] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M03_metrics [2026-07-02 14:25:15,338] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M03_metrics [2026-07-02 14:25:15,443] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: M891_p21_R1.fastq.gz [2026-07-02 14:25:15,444] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: M891_p21_R2.fastq.gz [2026-07-02 14:25:15,673] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M10_SJ.out.tab [2026-07-02 14:25:15,677] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M10_SJ.out.tab [2026-07-02 14:25:15,678] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M10_SJ.out.tab [2026-07-02 14:25:15,678] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M10_SJ.out.tab [2026-07-02 14:25:15,686] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M10_SJ.out.tab [2026-07-02 14:25:15,686] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M10_SJ.out.tab [2026-07-02 14:25:15,686] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M10_SJ.out.tab [2026-07-02 14:25:15,686] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M10_SJ.out.tab [2026-07-02 14:25:15,687] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M10_SJ.out.tab [2026-07-02 14:25:15,687] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M10_SJ.out.tab [2026-07-02 14:25:15,687] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M10_SJ.out.tab [2026-07-02 14:25:15,687] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M10_SJ.out.tab [2026-07-02 14:25:15,687] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G259_M10_SJ.out.tab [2026-07-02 14:25:15,687] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M10_SJ.out.tab [2026-07-02 14:25:18,607] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M10_marked_dup_metrics.txt [2026-07-02 14:25:18,612] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M10_marked_dup_metrics.txt [2026-07-02 14:25:18,612] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M10_marked_dup_metrics.txt [2026-07-02 14:25:18,612] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M10_marked_dup_metrics.txt [2026-07-02 14:25:18,619] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M10_marked_dup_metrics.txt [2026-07-02 14:25:18,673] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M10_metrics [2026-07-02 14:25:18,677] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M10_metrics [2026-07-02 14:25:18,678] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M10_metrics [2026-07-02 14:25:18,678] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M10_metrics [2026-07-02 14:25:18,685] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M10_metrics [2026-07-02 14:25:18,747] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G259_M10_hist.pdf [2026-07-02 14:25:18,777] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:18,783] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:18,783] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:18,783] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:18,791] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:18,792] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:18,792] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:18,792] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:18,792] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:18,792] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:18,792] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:18,792] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:18,817] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:19,807] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:19,813] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:19,814] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:19,814] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:19,823] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:19,824] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:19,824] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:19,824] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:19,824] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:19,824] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:19,824] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:19,824] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:19,849] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M10_featureCounts.out [2026-07-02 14:25:20,817] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M10_metrics [2026-07-02 14:25:20,820] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M10_metrics [2026-07-02 14:25:20,825] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M10_metrics [2026-07-02 14:25:20,893] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: M892_p21_R2.fastq.gz [2026-07-02 14:25:20,894] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: M892_p21_R1.fastq.gz [2026-07-02 14:25:21,038] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M11_SJ.out.tab [2026-07-02 14:25:21,043] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M11_SJ.out.tab [2026-07-02 14:25:21,043] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M11_SJ.out.tab [2026-07-02 14:25:21,043] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M11_SJ.out.tab [2026-07-02 14:25:21,053] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M11_SJ.out.tab [2026-07-02 14:25:21,053] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M11_SJ.out.tab [2026-07-02 14:25:21,053] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M11_SJ.out.tab [2026-07-02 14:25:21,053] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M11_SJ.out.tab [2026-07-02 14:25:21,053] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M11_SJ.out.tab [2026-07-02 14:25:21,053] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M11_SJ.out.tab [2026-07-02 14:25:21,053] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M11_SJ.out.tab [2026-07-02 14:25:21,053] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M11_SJ.out.tab [2026-07-02 14:25:21,053] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G259_M11_SJ.out.tab [2026-07-02 14:25:21,053] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M11_SJ.out.tab [2026-07-02 14:25:23,649] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M11_marked_dup_metrics.txt [2026-07-02 14:25:23,654] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M11_marked_dup_metrics.txt [2026-07-02 14:25:23,668] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M11_marked_dup_metrics.txt [2026-07-02 14:25:23,668] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M11_marked_dup_metrics.txt [2026-07-02 14:25:23,679] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M11_marked_dup_metrics.txt [2026-07-02 14:25:23,703] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G259_M11_hist.pdf [2026-07-02 14:25:23,726] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M11_metrics [2026-07-02 14:25:23,730] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M11_metrics [2026-07-02 14:25:23,730] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M11_metrics [2026-07-02 14:25:23,730] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M11_metrics [2026-07-02 14:25:23,738] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M11_metrics [2026-07-02 14:25:23,820] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:23,824] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:23,825] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:23,825] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:23,832] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:23,832] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:23,832] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:23,832] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:23,832] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:23,833] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:23,833] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:23,833] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:23,853] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:24,835] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:24,841] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:24,842] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:24,842] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:24,851] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:24,851] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:24,851] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:24,852] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:24,852] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:24,852] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:24,852] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:24,852] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:24,876] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M11_featureCounts.out [2026-07-02 14:25:25,825] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M11_metrics [2026-07-02 14:25:25,830] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M11_metrics [2026-07-02 14:25:25,836] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M11_metrics [2026-07-02 14:25:25,902] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: M896_p21_R2.fastq.gz [2026-07-02 14:25:25,904] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: M896_p21_R1.fastq.gz [2026-07-02 14:25:26,074] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M12_SJ.out.tab [2026-07-02 14:25:26,080] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M12_SJ.out.tab [2026-07-02 14:25:26,081] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M12_SJ.out.tab [2026-07-02 14:25:26,081] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M12_SJ.out.tab [2026-07-02 14:25:26,090] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M12_SJ.out.tab [2026-07-02 14:25:26,090] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M12_SJ.out.tab [2026-07-02 14:25:26,090] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M12_SJ.out.tab [2026-07-02 14:25:26,090] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M12_SJ.out.tab [2026-07-02 14:25:26,090] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M12_SJ.out.tab [2026-07-02 14:25:26,090] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M12_SJ.out.tab [2026-07-02 14:25:26,091] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M12_SJ.out.tab [2026-07-02 14:25:26,091] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M12_SJ.out.tab [2026-07-02 14:25:26,091] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G259_M12_SJ.out.tab [2026-07-02 14:25:26,091] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M12_SJ.out.tab [2026-07-02 14:25:28,526] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M12_marked_dup_metrics.txt [2026-07-02 14:25:28,533] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M12_marked_dup_metrics.txt [2026-07-02 14:25:28,533] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M12_marked_dup_metrics.txt [2026-07-02 14:25:28,534] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M12_marked_dup_metrics.txt [2026-07-02 14:25:28,544] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M12_marked_dup_metrics.txt [2026-07-02 14:25:28,588] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M12_metrics [2026-07-02 14:25:28,593] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M12_metrics [2026-07-02 14:25:28,594] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M12_metrics [2026-07-02 14:25:28,594] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M12_metrics [2026-07-02 14:25:28,603] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M12_metrics [2026-07-02 14:25:28,656] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G259_M12_hist.pdf [2026-07-02 14:25:28,677] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:28,682] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:28,683] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:28,683] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:28,691] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:28,691] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:28,691] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:28,691] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:28,691] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:28,691] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:28,691] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:28,691] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:28,719] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:29,686] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:29,691] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:29,692] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:29,692] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:29,699] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:29,699] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:29,699] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:29,699] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:29,699] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:29,699] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:29,699] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:29,699] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:29,719] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M12_featureCounts.out [2026-07-02 14:25:30,672] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M12_metrics [2026-07-02 14:25:30,676] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M12_metrics [2026-07-02 14:25:30,681] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M12_metrics [2026-07-02 14:25:30,772] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: L1377_EKRN230002961-1A_HNHTCDSX5_L1_2.fq.gz [2026-07-02 14:25:30,773] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: L1377_EKRN230002961-1A_HNHTCDSX5_L1_1.fq.gz [2026-07-02 14:25:30,964] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M13_SJ.out.tab [2026-07-02 14:25:30,970] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M13_SJ.out.tab [2026-07-02 14:25:30,971] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M13_SJ.out.tab [2026-07-02 14:25:30,971] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M13_SJ.out.tab [2026-07-02 14:25:30,979] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M13_SJ.out.tab [2026-07-02 14:25:30,979] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M13_SJ.out.tab [2026-07-02 14:25:30,980] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M13_SJ.out.tab [2026-07-02 14:25:30,980] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M13_SJ.out.tab [2026-07-02 14:25:30,980] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M13_SJ.out.tab [2026-07-02 14:25:30,980] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M13_SJ.out.tab [2026-07-02 14:25:30,980] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M13_SJ.out.tab [2026-07-02 14:25:30,980] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M13_SJ.out.tab [2026-07-02 14:25:30,980] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G259_M13_SJ.out.tab [2026-07-02 14:25:30,980] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M13_SJ.out.tab [2026-07-02 14:25:33,476] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M13_marked_dup_metrics.txt [2026-07-02 14:25:33,481] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M13_marked_dup_metrics.txt [2026-07-02 14:25:33,482] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M13_marked_dup_metrics.txt [2026-07-02 14:25:33,482] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M13_marked_dup_metrics.txt [2026-07-02 14:25:33,490] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M13_marked_dup_metrics.txt [2026-07-02 14:25:33,520] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G259_M13_hist.pdf [2026-07-02 14:25:33,536] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M13_metrics [2026-07-02 14:25:33,541] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M13_metrics [2026-07-02 14:25:33,542] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M13_metrics [2026-07-02 14:25:33,542] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M13_metrics [2026-07-02 14:25:33,551] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M13_metrics [2026-07-02 14:25:33,665] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:33,670] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:33,671] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:33,671] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:33,678] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:33,694] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:33,694] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:33,694] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:33,694] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:33,694] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:33,694] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:33,694] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:33,719] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:34,721] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:34,726] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:34,727] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:34,727] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:34,736] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:34,736] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:34,736] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:34,736] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:34,736] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:34,737] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:34,737] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:34,737] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:34,762] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M13_featureCounts.out [2026-07-02 14:25:35,691] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M13_metrics [2026-07-02 14:25:35,696] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M13_metrics [2026-07-02 14:25:35,703] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M13_metrics [2026-07-02 14:25:35,788] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: L1378_EKRN230002962-1A_HNHTCDSX5_L1_1.fq.gz [2026-07-02 14:25:35,789] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: L1378_EKRN230002962-1A_HNHTCDSX5_L1_2.fq.gz [2026-07-02 14:25:35,984] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M14_SJ.out.tab [2026-07-02 14:25:35,989] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M14_SJ.out.tab [2026-07-02 14:25:35,990] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M14_SJ.out.tab [2026-07-02 14:25:35,990] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M14_SJ.out.tab [2026-07-02 14:25:36,001] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M14_SJ.out.tab [2026-07-02 14:25:36,001] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M14_SJ.out.tab [2026-07-02 14:25:36,001] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M14_SJ.out.tab [2026-07-02 14:25:36,001] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M14_SJ.out.tab [2026-07-02 14:25:36,001] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M14_SJ.out.tab [2026-07-02 14:25:36,001] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M14_SJ.out.tab [2026-07-02 14:25:36,001] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M14_SJ.out.tab [2026-07-02 14:25:36,001] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M14_SJ.out.tab [2026-07-02 14:25:36,002] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G259_M14_SJ.out.tab [2026-07-02 14:25:36,002] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M14_SJ.out.tab [2026-07-02 14:25:38,529] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M14_marked_dup_metrics.txt [2026-07-02 14:25:38,533] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M14_marked_dup_metrics.txt [2026-07-02 14:25:38,534] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M14_marked_dup_metrics.txt [2026-07-02 14:25:38,534] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M14_marked_dup_metrics.txt [2026-07-02 14:25:38,544] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M14_marked_dup_metrics.txt [2026-07-02 14:25:38,572] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G259_M14_hist.pdf [2026-07-02 14:25:38,597] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M14_metrics [2026-07-02 14:25:38,602] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M14_metrics [2026-07-02 14:25:38,603] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M14_metrics [2026-07-02 14:25:38,603] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M14_metrics [2026-07-02 14:25:38,614] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M14_metrics [2026-07-02 14:25:38,695] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:38,701] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:38,712] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:38,712] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:38,722] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:38,722] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:38,722] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:38,723] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:38,723] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:38,723] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:38,723] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:38,723] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:38,748] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:40,087] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:40,124] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:40,128] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:40,128] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:40,194] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:40,195] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:40,195] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:40,195] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:40,195] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:40,195] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:40,195] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:40,195] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:40,225] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M14_featureCounts.out [2026-07-02 14:25:41,598] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M14_metrics [2026-07-02 14:25:41,643] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M14_metrics [2026-07-02 14:25:41,711] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M14_metrics [2026-07-02 14:25:42,262] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F917_p21_R1.fastq.gz [2026-07-02 14:25:42,263] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F917_p21_R2.fastq.gz [2026-07-02 14:25:42,334] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M04_SJ.out.tab [2026-07-02 14:25:42,340] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M04_SJ.out.tab [2026-07-02 14:25:42,341] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M04_SJ.out.tab [2026-07-02 14:25:42,341] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M04_SJ.out.tab [2026-07-02 14:25:42,349] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M04_SJ.out.tab [2026-07-02 14:25:42,349] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M04_SJ.out.tab [2026-07-02 14:25:42,349] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M04_SJ.out.tab [2026-07-02 14:25:42,349] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M04_SJ.out.tab [2026-07-02 14:25:42,350] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M04_SJ.out.tab [2026-07-02 14:25:42,350] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M04_SJ.out.tab [2026-07-02 14:25:42,350] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M04_SJ.out.tab [2026-07-02 14:25:42,350] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M04_SJ.out.tab [2026-07-02 14:25:42,350] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G259_M04_SJ.out.tab [2026-07-02 14:25:42,350] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M04_SJ.out.tab [2026-07-02 14:25:44,986] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M04_marked_dup_metrics.txt [2026-07-02 14:25:44,990] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M04_marked_dup_metrics.txt [2026-07-02 14:25:44,990] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M04_marked_dup_metrics.txt [2026-07-02 14:25:44,990] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M04_marked_dup_metrics.txt [2026-07-02 14:25:45,000] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M04_marked_dup_metrics.txt [2026-07-02 14:25:45,028] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G259_M04_hist.pdf [2026-07-02 14:25:45,060] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M04_metrics [2026-07-02 14:25:45,064] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M04_metrics [2026-07-02 14:25:45,065] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M04_metrics [2026-07-02 14:25:45,065] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M04_metrics [2026-07-02 14:25:45,072] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M04_metrics [2026-07-02 14:25:45,209] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:45,214] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:45,214] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:45,215] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:45,223] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:45,223] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:45,223] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:45,223] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:45,223] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:45,223] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:45,223] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:45,223] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:45,246] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:46,208] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:46,213] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:46,214] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:46,214] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:46,223] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:46,224] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:46,224] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:46,224] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:46,224] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:46,224] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:46,224] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:46,224] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:46,247] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M04_featureCounts.out [2026-07-02 14:25:47,166] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M04_metrics [2026-07-02 14:25:47,170] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M04_metrics [2026-07-02 14:25:47,176] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M04_metrics [2026-07-02 14:25:47,242] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F919_p21_R2.fastq.gz [2026-07-02 14:25:47,243] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F919_p21_R1.fastq.gz [2026-07-02 14:25:47,398] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M05_SJ.out.tab [2026-07-02 14:25:47,404] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M05_SJ.out.tab [2026-07-02 14:25:47,404] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M05_SJ.out.tab [2026-07-02 14:25:47,405] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M05_SJ.out.tab [2026-07-02 14:25:47,415] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M05_SJ.out.tab [2026-07-02 14:25:47,415] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M05_SJ.out.tab [2026-07-02 14:25:47,415] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M05_SJ.out.tab [2026-07-02 14:25:47,415] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M05_SJ.out.tab [2026-07-02 14:25:47,415] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M05_SJ.out.tab [2026-07-02 14:25:47,415] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M05_SJ.out.tab [2026-07-02 14:25:47,415] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M05_SJ.out.tab [2026-07-02 14:25:47,415] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M05_SJ.out.tab [2026-07-02 14:25:47,415] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G259_M05_SJ.out.tab [2026-07-02 14:25:47,416] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M05_SJ.out.tab [2026-07-02 14:25:50,319] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M05_marked_dup_metrics.txt [2026-07-02 14:25:50,323] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M05_marked_dup_metrics.txt [2026-07-02 14:25:50,462] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M05_marked_dup_metrics.txt [2026-07-02 14:25:50,463] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M05_marked_dup_metrics.txt [2026-07-02 14:25:50,474] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M05_marked_dup_metrics.txt [2026-07-02 14:25:50,512] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G259_M05_hist.pdf [2026-07-02 14:25:50,531] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M05_metrics [2026-07-02 14:25:50,535] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M05_metrics [2026-07-02 14:25:50,535] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M05_metrics [2026-07-02 14:25:50,535] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M05_metrics [2026-07-02 14:25:50,544] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M05_metrics [2026-07-02 14:25:50,635] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:50,639] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:50,639] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:50,639] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:50,647] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:50,647] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:50,647] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:50,647] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:50,648] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:50,648] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:50,648] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:50,648] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:50,674] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:51,657] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:51,662] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:51,663] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:51,663] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:51,672] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:51,672] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:51,672] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:51,672] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:51,672] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:51,672] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:51,672] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:51,672] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:51,692] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M05_featureCounts.out [2026-07-02 14:25:52,628] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M05_metrics [2026-07-02 14:25:52,632] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M05_metrics [2026-07-02 14:25:52,638] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M05_metrics [2026-07-02 14:25:52,699] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F920_p21_R2.fastq.gz [2026-07-02 14:25:52,701] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: F920_p21_R1.fastq.gz [2026-07-02 14:25:52,809] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M06_SJ.out.tab [2026-07-02 14:25:52,813] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M06_SJ.out.tab [2026-07-02 14:25:52,814] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M06_SJ.out.tab [2026-07-02 14:25:52,814] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M06_SJ.out.tab [2026-07-02 14:25:52,821] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M06_SJ.out.tab [2026-07-02 14:25:52,821] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M06_SJ.out.tab [2026-07-02 14:25:52,821] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M06_SJ.out.tab [2026-07-02 14:25:52,821] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M06_SJ.out.tab [2026-07-02 14:25:52,821] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M06_SJ.out.tab [2026-07-02 14:25:52,821] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M06_SJ.out.tab [2026-07-02 14:25:52,821] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M06_SJ.out.tab [2026-07-02 14:25:52,821] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M06_SJ.out.tab [2026-07-02 14:25:52,822] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G259_M06_SJ.out.tab [2026-07-02 14:25:52,822] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M06_SJ.out.tab [2026-07-02 14:25:55,626] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M06_marked_dup_metrics.txt [2026-07-02 14:25:55,630] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M06_marked_dup_metrics.txt [2026-07-02 14:25:55,645] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M06_marked_dup_metrics.txt [2026-07-02 14:25:55,646] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M06_marked_dup_metrics.txt [2026-07-02 14:25:55,654] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M06_marked_dup_metrics.txt [2026-07-02 14:25:55,696] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M06_metrics [2026-07-02 14:25:55,700] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M06_metrics [2026-07-02 14:25:55,700] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M06_metrics [2026-07-02 14:25:55,701] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M06_metrics [2026-07-02 14:25:55,710] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M06_metrics [2026-07-02 14:25:55,771] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G259_M06_hist.pdf [2026-07-02 14:25:55,797] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:55,801] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:55,801] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:55,801] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:55,808] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:55,808] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:55,808] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:55,808] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:55,808] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:55,808] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:55,808] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:55,808] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:55,828] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:56,779] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:56,784] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:56,784] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:56,784] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:56,792] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:56,792] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:56,792] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:56,792] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:56,792] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:56,792] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:56,793] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:56,793] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:56,814] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G259_M06_featureCounts.out [2026-07-02 14:25:57,750] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G259_M06_metrics [2026-07-02 14:25:57,754] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G259_M06_metrics [2026-07-02 14:25:57,763] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G259_M06_metrics [2026-07-02 14:25:57,832] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-07-02 14:25:57,836] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-07-02 14:25:57,842] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-07-02 14:25:57,867] multiqc [DEBUG ] File ignored 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pattern filesize limit: Step_06_G259_RNAseq_G259_M02.o6425285 [2026-07-02 14:26:11,734] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M02.o6425285 [2026-07-02 14:26:11,734] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M02.o6425285 [2026-07-02 14:26:11,744] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M02.o6425285 [2026-07-02 14:26:11,800] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M13.o6425296 [2026-07-02 14:26:11,804] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M13.o6425296 [2026-07-02 14:26:11,804] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M13.o6425296 [2026-07-02 14:26:11,804] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M13.o6425296 [2026-07-02 14:26:11,813] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M13.o6425296 [2026-07-02 14:26:11,937] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M09.o6425292 [2026-07-02 14:26:11,971] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M09.o6425292 [2026-07-02 14:26:11,975] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M09.o6425292 [2026-07-02 14:26:11,975] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M09.o6425292 [2026-07-02 14:26:12,043] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M09.o6425292 [2026-07-02 14:26:12,252] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M05.o6425288 [2026-07-02 14:26:12,288] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M05.o6425288 [2026-07-02 14:26:12,292] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M05.o6425288 [2026-07-02 14:26:12,292] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M05.o6425288 [2026-07-02 14:26:12,359] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M05.o6425288 [2026-07-02 14:26:12,575] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M04.o6425287 [2026-07-02 14:26:12,609] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M04.o6425287 [2026-07-02 14:26:12,613] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M04.o6425287 [2026-07-02 14:26:12,613] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M04.o6425287 [2026-07-02 14:26:12,686] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M04.o6425287 [2026-07-02 14:26:12,897] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M16.o6425299 [2026-07-02 14:26:12,935] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M16.o6425299 [2026-07-02 14:26:12,938] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M16.o6425299 [2026-07-02 14:26:12,938] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M16.o6425299 [2026-07-02 14:26:13,005] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G259_RNAseq_G259_M16.o6425299 [2026-07-02 14:26:13,209] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-07-02 14:26:13,252] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-07-02 14:26:13,494] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-07-02 14:26:13,538] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-07-02 14:26:13,720] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2026-07-02 14:26:13,818] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2026-07-02 14:26:13,852] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2026-07-02 14:26:13,856] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2026-07-02 14:26:13,856] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2026-07-02 14:26:13,918] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2026-07-02 14:26:13,918] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2026-07-02 14:26:13,918] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2026-07-02 14:26:13,918] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2026-07-02 14:26:13,918] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2026-07-02 14:26:13,918] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2026-07-02 14:26:13,918] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2026-07-02 14:26:13,918] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2026-07-02 14:26:13,919] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2026-07-02 14:26:13,919] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2026-07-02 14:26:14,870] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-07-02 14:26:14,873] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-07-02 14:26:14,873] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-07-02 14:26:14,873] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-07-02 14:26:14,879] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-07-02 14:26:14,941] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-07-02 14:26:14,945] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-07-02 14:26:14,946] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-07-02 14:26:14,946] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-07-02 14:26:14,955] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-07-02 14:26:17,795] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2026-07-02 14:26:17,810] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2026-07-02 14:26:17,815] multiqc [DEBUG ] No samples found: custom_content [2026-07-02 14:26:17,839] multiqc [DEBUG ] No samples found: ccs [2026-07-02 14:26:17,862] multiqc [DEBUG ] No samples found: ngsderive [2026-07-02 14:26:17,888] multiqc [DEBUG ] No samples found: purple [2026-07-02 14:26:17,897] multiqc [DEBUG ] No samples found: conpair [2026-07-02 14:26:17,914] multiqc [DEBUG ] No samples found: lima [2026-07-02 14:26:17,933] multiqc [DEBUG ] No samples found: peddy [2026-07-02 14:26:17,960] multiqc [DEBUG ] No samples found: somalier [2026-07-02 14:26:17,984] multiqc [DEBUG ] No samples found: methylQA [2026-07-02 14:26:18,035] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2026-07-02 14:26:18,036] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2026-07-02 14:26:18,036] multiqc [DEBUG ] No samples found: mosdepth [2026-07-02 14:26:18,042] multiqc [DEBUG ] No samples found: phantompeakqualtools [2026-07-02 14:26:18,060] multiqc [DEBUG ] No samples found: qualimap [2026-07-02 14:26:18,089] multiqc [DEBUG ] No samples found: preseq [2026-07-02 14:26:18,109] multiqc [DEBUG ] No samples found: quast [2026-07-02 14:26:18,127] multiqc [DEBUG ] No samples found: qorts [2026-07-02 14:26:18,145] multiqc [DEBUG ] No samples found: rna_seqc [2026-07-02 14:26:18,169] multiqc [DEBUG ] No samples found: rockhopper [2026-07-02 14:26:18,192] multiqc [DEBUG ] No samples found: rsem [2026-07-02 14:26:18,274] multiqc.modules.rseqc.rseqc [INFO ] Found 16 infer_experiment reports [2026-07-02 14:26:18,300] multiqc [DEBUG ] No samples found: busco [2026-07-02 14:26:18,320] multiqc [DEBUG ] No samples found: bustools [2026-07-02 14:26:18,341] multiqc [DEBUG ] No samples found: goleft_indexcov [2026-07-02 14:26:18,370] multiqc [DEBUG ] No samples found: gffcompare [2026-07-02 14:26:18,382] multiqc [DEBUG ] No samples found: disambiguate [2026-07-02 14:26:18,405] multiqc [DEBUG ] No samples found: supernova [2026-07-02 14:26:18,483] multiqc [DEBUG ] No samples found: deeptools [2026-07-02 14:26:18,507] multiqc [DEBUG ] No samples found: sargasso [2026-07-02 14:26:18,526] multiqc [DEBUG ] No samples found: verifybamid [2026-07-02 14:26:18,552] multiqc [DEBUG ] No samples found: mirtrace [2026-07-02 14:26:18,570] multiqc [DEBUG ] No samples found: happy [2026-07-02 14:26:18,605] multiqc [DEBUG ] No samples found: mirtop [2026-07-02 14:26:18,631] multiqc [DEBUG ] No samples found: sambamba [2026-07-02 14:26:18,655] multiqc [DEBUG ] No samples found: homer [2026-07-02 14:26:18,673] multiqc [DEBUG ] No samples found: hops [2026-07-02 14:26:18,687] multiqc [DEBUG ] No samples found: macs2 [2026-07-02 14:26:18,697] multiqc [DEBUG ] No samples found: theta2 [2026-07-02 14:26:18,714] multiqc [DEBUG ] No samples found: snpeff [2026-07-02 14:26:18,768] multiqc [DEBUG ] No samples found: gatk [2026-07-02 14:26:18,778] multiqc [DEBUG ] No samples found: htseq [2026-07-02 14:26:18,799] multiqc [DEBUG ] No samples found: bcftools [2026-07-02 14:26:18,818] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G259_M07_sorted [2026-07-02 14:26:18,821] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G259_M15_sorted [2026-07-02 14:26:18,825] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G259_M16_sorted [2026-07-02 14:26:18,828] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G259_M08_sorted [2026-07-02 14:26:18,831] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G259_M09_sorted [2026-07-02 14:26:18,836] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G259_M01_sorted [2026-07-02 14:26:18,840] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G259_M02_sorted [2026-07-02 14:26:18,843] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G259_M03_sorted [2026-07-02 14:26:18,847] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G259_M10_sorted [2026-07-02 14:26:18,850] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G259_M11_sorted [2026-07-02 14:26:18,853] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G259_M12_sorted [2026-07-02 14:26:18,858] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G259_M13_sorted [2026-07-02 14:26:18,862] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G259_M14_sorted [2026-07-02 14:26:18,866] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G259_M04_sorted [2026-07-02 14:26:18,870] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G259_M05_sorted [2026-07-02 14:26:18,874] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G259_M06_sorted [2026-07-02 14:26:18,874] multiqc.modules.featureCounts.feature_counts [INFO ] Found 16 reports [2026-07-02 14:26:18,925] multiqc [DEBUG ] No samples found: fgbio [2026-07-02 14:26:18,980] multiqc [DEBUG ] No samples found: dragen [2026-07-02 14:26:19,001] multiqc [DEBUG ] No samples found: dedup [2026-07-02 14:26:19,020] multiqc [DEBUG ] No samples found: damageprofiler [2026-07-02 14:26:19,217] multiqc [DEBUG ] No samples found: biobambam2 [2026-07-02 14:26:19,244] multiqc [DEBUG ] No samples found: jcvi [2026-07-02 14:26:19,256] multiqc [DEBUG ] No samples found: mtnucratio [2026-07-02 14:26:19,896] multiqc.modules.picard.picard [INFO ] Found 16 InsertSizeMetrics reports [2026-07-02 14:26:19,936] multiqc.modules.picard.picard [INFO ] Found 16 MarkDuplicates reports [2026-07-02 14:26:19,979] multiqc.modules.picard.picard [INFO ] Found 16 RnaSeqMetrics reports [2026-07-02 14:26:19,992] multiqc [DEBUG ] No samples found: vep [2026-07-02 14:26:20,020] multiqc [DEBUG ] No samples found: sentieon [2026-07-02 14:26:20,036] multiqc [DEBUG ] No samples found: prokka [2026-07-02 14:26:20,060] multiqc [DEBUG ] No samples found: qc3C [2026-07-02 14:26:20,079] multiqc [DEBUG ] No samples found: nanostat [2026-07-02 14:26:20,090] multiqc [DEBUG ] No samples found: samblaster [2026-07-02 14:26:20,221] multiqc.modules.samtools.samtools [INFO ] Found 48 flagstat reports [2026-07-02 14:26:20,241] multiqc [DEBUG ] No samples found: sexdeterrmine [2026-07-02 14:26:20,248] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2026-07-02 14:26:20,260] multiqc [DEBUG ] No samples found: bamtools [2026-07-02 14:26:20,273] multiqc [DEBUG ] No samples found: jellyfish [2026-07-02 14:26:20,289] multiqc [DEBUG ] No samples found: vcftools [2026-07-02 14:26:20,318] multiqc [DEBUG ] No samples found: longranger [2026-07-02 14:26:20,339] multiqc [DEBUG ] No samples found: stacks [2026-07-02 14:26:20,361] multiqc [DEBUG ] No samples found: varscan2 [2026-07-02 14:26:20,379] multiqc [DEBUG ] No samples found: snippy [2026-07-02 14:26:20,428] multiqc [DEBUG ] No samples found: bbmap [2026-07-02 14:26:20,445] multiqc [DEBUG ] No samples found: bismark [2026-07-02 14:26:20,473] multiqc [DEBUG ] No samples found: biscuit [2026-07-02 14:26:20,493] multiqc [DEBUG ] No samples found: hicexplorer [2026-07-02 14:26:20,514] multiqc [DEBUG ] No samples found: hicup [2026-07-02 14:26:20,556] multiqc [DEBUG ] No samples found: hicpro [2026-07-02 14:26:20,567] multiqc [DEBUG ] No samples found: salmon [2026-07-02 14:26:20,612] multiqc [DEBUG ] No samples found: kallisto [2026-07-02 14:26:20,635] multiqc [DEBUG ] No samples found: slamdunk [2026-07-02 14:26:22,275] multiqc.modules.star.star [INFO ] Found 16 reports and 16 gene count files [2026-07-02 14:26:22,375] multiqc [DEBUG ] No samples found: hisat2 [2026-07-02 14:26:22,391] multiqc [DEBUG ] No samples found: tophat [2026-07-02 14:26:22,414] multiqc [DEBUG ] No samples found: bowtie2 [2026-07-02 14:26:22,433] multiqc [DEBUG ] No samples found: bowtie1 [2026-07-02 14:26:22,455] multiqc [DEBUG ] No samples found: snpsplit [2026-07-02 14:26:22,481] multiqc [DEBUG ] No samples found: odgi [2026-07-02 14:26:22,504] multiqc [DEBUG ] No samples found: pangolin [2026-07-02 14:26:22,514] multiqc [DEBUG ] No samples found: kat [2026-07-02 14:26:22,525] multiqc [DEBUG ] No samples found: leehom [2026-07-02 14:26:22,548] multiqc [DEBUG ] No samples found: adapterRemoval [2026-07-02 14:26:22,559] multiqc [DEBUG ] No samples found: clipandmerge [2026-07-02 14:26:22,579] multiqc [DEBUG ] No samples found: cutadapt [2026-07-02 14:26:22,586] multiqc [DEBUG ] No samples found: flexbar [2026-07-02 14:26:22,613] multiqc [DEBUG ] No samples found: kaiju [2026-07-02 14:26:22,634] multiqc [DEBUG ] No samples found: kraken [2026-07-02 14:26:22,655] multiqc [DEBUG ] No samples found: malt [2026-07-02 14:26:22,689] multiqc [DEBUG ] No samples found: trimmomatic [2026-07-02 14:26:22,729] multiqc [DEBUG ] No samples found: sickle [2026-07-02 14:26:22,750] multiqc [DEBUG ] No samples found: skewer [2026-07-02 14:26:22,760] multiqc [DEBUG ] No samples found: sortmerna [2026-07-02 14:26:22,770] multiqc [DEBUG ] No samples found: biobloomtools [2026-07-02 14:26:22,796] multiqc [DEBUG ] No samples found: fastq_screen [2026-07-02 14:26:22,814] multiqc [DEBUG ] No samples found: afterqc [2026-07-02 14:26:22,869] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-07-02 14:26:22,888] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-07-02 14:26:22,913] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-07-02 14:26:22,932] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-07-02 14:26:22,952] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-07-02 14:26:22,974] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-07-02 14:26:22,995] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-07-02 14:26:23,018] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-07-02 14:26:23,039] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-07-02 14:26:23,053] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-07-02 14:26:23,078] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-07-02 14:26:23,107] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-07-02 14:26:23,127] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-07-02 14:26:23,142] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-07-02 14:26:23,157] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-07-02 14:26:23,174] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-07-02 14:26:23,176] multiqc.modules.fastp.fastp [INFO ] Found 16 reports [2026-07-02 14:26:31,776] multiqc.modules.fastqc.fastqc [INFO ] Found 32 reports [2026-07-02 14:26:31,778] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2026-07-02 14:26:33,790] multiqc [DEBUG ] No samples found: pychopper [2026-07-02 14:26:33,812] multiqc [DEBUG ] No samples found: pycoqc [2026-07-02 14:26:33,834] multiqc [DEBUG ] No samples found: minionqc [2026-07-02 14:26:33,861] multiqc [DEBUG ] No samples found: multivcfanalyzer [2026-07-02 14:26:33,883] multiqc [DEBUG ] No samples found: clusterflow [2026-07-02 14:26:33,911] multiqc [DEBUG ] No samples found: bcl2fastq [2026-07-02 14:26:33,934] multiqc [DEBUG ] No samples found: bclconvert [2026-07-02 14:26:33,958] multiqc [DEBUG ] No samples found: interop [2026-07-02 14:26:33,988] multiqc [DEBUG ] No samples found: ivar [2026-07-02 14:26:34,011] multiqc [DEBUG ] No samples found: flash [2026-07-02 14:26:34,032] multiqc [DEBUG ] No samples found: seqyclean [2026-07-02 14:26:34,046] multiqc [DEBUG ] No samples found: optitype [2026-07-02 14:26:34,149] multiqc [INFO ] Compressing plot data [2026-07-02 14:26:36,274] multiqc [INFO ] Report : multiqc_report.html [2026-07-02 14:26:36,274] multiqc [INFO ] Data : multiqc_data [2026-07-02 14:26:36,274] multiqc [DEBUG ] Moving data file from '/scratch/tmpdyv02yuu/multiqc_data' to '/projectnb/wax-dk/max/G259_RNAseq/Scripts/99_final_summary/G259_RNAseq_multiqc_report/multiqc_data' [2026-07-02 14:26:36,975] multiqc [INFO ] MultiQC complete