[2026-05-21 21:40:58,472] multiqc [DEBUG ] This is MultiQC v1.11 [2026-05-21 21:40:58,473] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2026-05-21 21:40:58,473] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2026-05-21 21:40:58,474] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2026-05-21 21:40:58,476] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/G256_AML12_cells_Various_Studies/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2026-05-21 21:40:58,477] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2026-05-21 21:40:58,477] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2026-05-21 21:40:58,477] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G256_AML12_cells_Various_Studies/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G256_AML12_cells_Various_Studies/SAMPLES /projectnb2/wax-dk/max/G256_AML12_cells_Various_Studies/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G256_AML12_cells_Various_Studies/Scripts/06_CollectMetrics/ [2026-05-21 21:40:59,002] multiqc [WARNING] MultiQC Version v1.35 now available! [2026-05-21 21:40:59,002] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G256_AML12_cells_Various_Studies/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G256_AML12_cells_Various_Studies/SAMPLES /projectnb2/wax-dk/max/G256_AML12_cells_Various_Studies/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G256_AML12_cells_Various_Studies/Scripts/06_CollectMetrics/ [2026-05-21 21:40:59,002] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G256_AML12_cells_Various_Studies/Scripts/99_final_summary/G256_AML12_cells_Various_Studies_multiqc_report [2026-05-21 21:40:59,002] multiqc [DEBUG ] Template : default [2026-05-21 21:40:59,002] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2026-05-21 21:40:59,003] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2026-05-21 21:40:59,003] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpbvge1qfb [2026-05-21 21:40:59,389] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G256_AML12_cells_Various_Studies/SAMPLES [2026-05-21 21:40:59,389] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G256_AML12_cells_Various_Studies/Scripts/03_FASTQC [2026-05-21 21:40:59,389] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G256_AML12_cells_Various_Studies/Scripts/06_CollectMetrics [2026-05-21 21:40:59,688] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR30495208_1.fastq.gz [2026-05-21 21:40:59,688] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR30495208_2.fastq.gz [2026-05-21 21:40:59,835] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M11_SJ.out.tab [2026-05-21 21:40:59,838] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M11_SJ.out.tab [2026-05-21 21:40:59,838] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M11_SJ.out.tab [2026-05-21 21:40:59,839] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M11_SJ.out.tab [2026-05-21 21:40:59,844] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M11_SJ.out.tab [2026-05-21 21:40:59,844] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M11_SJ.out.tab [2026-05-21 21:40:59,844] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M11_SJ.out.tab [2026-05-21 21:40:59,844] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M11_SJ.out.tab [2026-05-21 21:40:59,844] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M11_SJ.out.tab [2026-05-21 21:40:59,844] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M11_SJ.out.tab [2026-05-21 21:40:59,844] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M11_SJ.out.tab [2026-05-21 21:40:59,844] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M11_SJ.out.tab [2026-05-21 21:40:59,844] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G256GSE276094_M11_SJ.out.tab [2026-05-21 21:40:59,844] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M11_SJ.out.tab [2026-05-21 21:41:02,240] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M11_marked_dup_metrics.txt [2026-05-21 21:41:02,244] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M11_marked_dup_metrics.txt [2026-05-21 21:41:02,245] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M11_marked_dup_metrics.txt [2026-05-21 21:41:02,245] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M11_marked_dup_metrics.txt [2026-05-21 21:41:02,251] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M11_marked_dup_metrics.txt [2026-05-21 21:41:02,294] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M11_metrics [2026-05-21 21:41:02,298] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M11_metrics [2026-05-21 21:41:02,299] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M11_metrics [2026-05-21 21:41:02,299] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M11_metrics [2026-05-21 21:41:02,304] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M11_metrics [2026-05-21 21:41:02,336] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE276094_M11_hist.pdf [2026-05-21 21:41:02,382] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M11_featureCounts.out [2026-05-21 21:41:02,386] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M11_featureCounts.out [2026-05-21 21:41:02,386] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 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[2026-05-21 21:41:02,393] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M11_featureCounts.out [2026-05-21 21:41:02,393] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M11_featureCounts.out [2026-05-21 21:41:02,393] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M11_featureCounts.out [2026-05-21 21:41:02,413] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M11_featureCounts.out [2026-05-21 21:41:03,349] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M11_featureCounts.out [2026-05-21 21:41:03,353] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M11_featureCounts.out [2026-05-21 21:41:03,353] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M11_featureCounts.out [2026-05-21 21:41:03,353] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M11_featureCounts.out [2026-05-21 21:41:03,359] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M11_featureCounts.out [2026-05-21 21:41:03,359] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M11_featureCounts.out [2026-05-21 21:41:03,360] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M11_featureCounts.out [2026-05-21 21:41:03,360] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M11_featureCounts.out [2026-05-21 21:41:03,360] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M11_featureCounts.out [2026-05-21 21:41:03,360] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M11_featureCounts.out [2026-05-21 21:41:03,360] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M11_featureCounts.out [2026-05-21 21:41:03,360] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M11_featureCounts.out [2026-05-21 21:41:03,379] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M11_featureCounts.out [2026-05-21 21:41:04,275] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M11_metrics [2026-05-21 21:41:04,278] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M11_metrics [2026-05-21 21:41:04,291] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M11_metrics [2026-05-21 21:41:04,328] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR32914431_1.fastq.gz [2026-05-21 21:41:04,328] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR32914431_2.fastq.gz [2026-05-21 21:41:04,416] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M28_SJ.out.tab [2026-05-21 21:41:04,421] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M28_SJ.out.tab [2026-05-21 21:41:04,421] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M28_SJ.out.tab [2026-05-21 21:41:04,421] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M28_SJ.out.tab [2026-05-21 21:41:04,426] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M28_SJ.out.tab [2026-05-21 21:41:04,426] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M28_SJ.out.tab [2026-05-21 21:41:04,426] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M28_SJ.out.tab [2026-05-21 21:41:04,426] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M28_SJ.out.tab [2026-05-21 21:41:04,426] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M28_SJ.out.tab [2026-05-21 21:41:04,426] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M28_SJ.out.tab [2026-05-21 21:41:04,426] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M28_SJ.out.tab [2026-05-21 21:41:04,427] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M28_SJ.out.tab [2026-05-21 21:41:04,427] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G256GSE293314_M28_SJ.out.tab [2026-05-21 21:41:04,427] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M28_SJ.out.tab [2026-05-21 21:41:07,098] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M28_marked_dup_metrics.txt [2026-05-21 21:41:07,102] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M28_marked_dup_metrics.txt [2026-05-21 21:41:07,103] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M28_marked_dup_metrics.txt [2026-05-21 21:41:07,103] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M28_marked_dup_metrics.txt [2026-05-21 21:41:07,109] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M28_marked_dup_metrics.txt [2026-05-21 21:41:07,134] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M28_metrics [2026-05-21 21:41:07,136] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M28_metrics [2026-05-21 21:41:07,136] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M28_metrics [2026-05-21 21:41:07,136] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M28_metrics [2026-05-21 21:41:07,140] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M28_metrics [2026-05-21 21:41:07,203] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE293314_M28_hist.pdf [2026-05-21 21:41:07,237] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:07,240] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:07,240] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:07,241] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:07,248] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:07,248] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:07,248] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:07,248] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:07,248] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:07,249] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:07,249] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:07,249] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:07,270] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:08,217] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:08,220] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:08,221] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:08,221] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:08,226] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:08,226] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:08,226] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:08,226] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:08,226] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:08,226] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:08,226] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:08,226] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:08,246] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M28_featureCounts.out [2026-05-21 21:41:09,167] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M28_metrics [2026-05-21 21:41:09,171] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M28_metrics [2026-05-21 21:41:09,179] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M28_metrics [2026-05-21 21:41:09,221] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR30495204_1.fastq.gz [2026-05-21 21:41:09,222] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR30495204_2.fastq.gz [2026-05-21 21:41:09,294] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M15_SJ.out.tab [2026-05-21 21:41:09,298] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M15_SJ.out.tab [2026-05-21 21:41:09,313] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M15_SJ.out.tab [2026-05-21 21:41:09,313] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M15_SJ.out.tab [2026-05-21 21:41:09,320] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M15_SJ.out.tab [2026-05-21 21:41:09,320] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M15_SJ.out.tab [2026-05-21 21:41:09,321] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M15_SJ.out.tab [2026-05-21 21:41:09,321] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M15_SJ.out.tab [2026-05-21 21:41:09,321] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M15_SJ.out.tab [2026-05-21 21:41:09,321] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M15_SJ.out.tab [2026-05-21 21:41:09,321] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M15_SJ.out.tab [2026-05-21 21:41:09,321] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M15_SJ.out.tab [2026-05-21 21:41:09,321] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G256GSE276094_M15_SJ.out.tab [2026-05-21 21:41:09,321] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M15_SJ.out.tab [2026-05-21 21:41:11,773] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M15_marked_dup_metrics.txt [2026-05-21 21:41:11,777] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M15_marked_dup_metrics.txt [2026-05-21 21:41:11,777] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M15_marked_dup_metrics.txt [2026-05-21 21:41:11,778] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M15_marked_dup_metrics.txt [2026-05-21 21:41:11,784] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M15_marked_dup_metrics.txt [2026-05-21 21:41:11,799] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE276094_M15_hist.pdf [2026-05-21 21:41:11,803] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M15_metrics [2026-05-21 21:41:11,805] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M15_metrics [2026-05-21 21:41:11,805] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M15_metrics [2026-05-21 21:41:11,805] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M15_metrics [2026-05-21 21:41:11,809] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M15_metrics [2026-05-21 21:41:11,862] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:11,866] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:11,866] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:11,867] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:11,873] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:11,873] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:11,873] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:11,873] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:11,873] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:11,873] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:11,873] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:11,873] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:11,892] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:12,820] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:12,824] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:12,825] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:12,825] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:12,829] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:12,829] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:12,830] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:12,830] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:12,830] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:12,830] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:12,830] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:12,830] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:12,849] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M15_featureCounts.out [2026-05-21 21:41:13,766] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M15_metrics [2026-05-21 21:41:13,770] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M15_metrics [2026-05-21 21:41:13,777] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M15_metrics [2026-05-21 21:41:13,821] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR30495209_1.fastq.gz [2026-05-21 21:41:13,822] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR30495209_2.fastq.gz [2026-05-21 21:41:13,903] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M10_SJ.out.tab [2026-05-21 21:41:13,907] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M10_SJ.out.tab [2026-05-21 21:41:13,908] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M10_SJ.out.tab [2026-05-21 21:41:13,908] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M10_SJ.out.tab [2026-05-21 21:41:13,914] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M10_SJ.out.tab [2026-05-21 21:41:13,915] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M10_SJ.out.tab [2026-05-21 21:41:13,915] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M10_SJ.out.tab [2026-05-21 21:41:13,915] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M10_SJ.out.tab [2026-05-21 21:41:13,915] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M10_SJ.out.tab [2026-05-21 21:41:13,915] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M10_SJ.out.tab [2026-05-21 21:41:13,915] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M10_SJ.out.tab [2026-05-21 21:41:13,915] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M10_SJ.out.tab [2026-05-21 21:41:13,915] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G256GSE276094_M10_SJ.out.tab [2026-05-21 21:41:13,915] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M10_SJ.out.tab [2026-05-21 21:41:16,297] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M10_marked_dup_metrics.txt [2026-05-21 21:41:16,301] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M10_marked_dup_metrics.txt [2026-05-21 21:41:16,301] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M10_marked_dup_metrics.txt [2026-05-21 21:41:16,302] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M10_marked_dup_metrics.txt [2026-05-21 21:41:16,307] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M10_marked_dup_metrics.txt [2026-05-21 21:41:16,321] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE276094_M10_hist.pdf [2026-05-21 21:41:16,331] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M10_metrics [2026-05-21 21:41:16,334] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M10_metrics [2026-05-21 21:41:16,334] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M10_metrics [2026-05-21 21:41:16,334] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M10_metrics [2026-05-21 21:41:16,339] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M10_metrics [2026-05-21 21:41:16,407] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:16,411] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:16,411] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:16,411] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:16,416] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:16,416] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:16,416] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:16,417] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:16,417] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:16,417] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:16,417] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:16,417] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:16,436] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:17,357] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:17,360] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:17,361] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:17,361] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:17,366] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:17,366] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:17,366] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:17,366] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:17,366] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:17,366] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:17,366] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:17,366] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:17,385] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M10_featureCounts.out [2026-05-21 21:41:18,279] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M10_metrics [2026-05-21 21:41:18,282] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M10_metrics [2026-05-21 21:41:18,287] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M10_metrics [2026-05-21 21:41:18,335] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR30495213_2.fastq.gz [2026-05-21 21:41:18,335] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR30495213_1.fastq.gz [2026-05-21 21:41:18,364] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M06_SJ.out.tab [2026-05-21 21:41:18,368] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M06_SJ.out.tab [2026-05-21 21:41:18,368] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M06_SJ.out.tab [2026-05-21 21:41:18,368] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M06_SJ.out.tab [2026-05-21 21:41:18,373] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M06_SJ.out.tab [2026-05-21 21:41:18,373] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M06_SJ.out.tab [2026-05-21 21:41:18,373] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M06_SJ.out.tab [2026-05-21 21:41:18,374] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M06_SJ.out.tab [2026-05-21 21:41:18,374] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M06_SJ.out.tab [2026-05-21 21:41:18,374] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M06_SJ.out.tab [2026-05-21 21:41:18,374] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M06_SJ.out.tab [2026-05-21 21:41:18,374] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M06_SJ.out.tab [2026-05-21 21:41:18,374] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G256GSE276094_M06_SJ.out.tab [2026-05-21 21:41:18,374] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M06_SJ.out.tab [2026-05-21 21:41:20,715] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M06_marked_dup_metrics.txt [2026-05-21 21:41:20,718] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M06_marked_dup_metrics.txt [2026-05-21 21:41:20,729] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M06_marked_dup_metrics.txt [2026-05-21 21:41:20,729] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M06_marked_dup_metrics.txt [2026-05-21 21:41:20,735] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M06_marked_dup_metrics.txt [2026-05-21 21:41:20,761] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M06_metrics [2026-05-21 21:41:20,763] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M06_metrics [2026-05-21 21:41:20,764] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M06_metrics [2026-05-21 21:41:20,764] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M06_metrics [2026-05-21 21:41:20,768] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M06_metrics [2026-05-21 21:41:20,793] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE276094_M06_hist.pdf [2026-05-21 21:41:20,847] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:20,850] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:20,851] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:20,851] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:20,856] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:20,856] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:20,856] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:20,856] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:20,856] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:20,856] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:20,856] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:20,856] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:20,875] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:21,807] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:21,809] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:21,810] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:21,810] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:21,814] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:21,814] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:21,814] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:21,814] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:21,814] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:21,814] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:21,814] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:21,814] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:21,831] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M06_featureCounts.out [2026-05-21 21:41:22,730] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M06_metrics [2026-05-21 21:41:22,735] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M06_metrics [2026-05-21 21:41:22,743] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M06_metrics [2026-05-21 21:41:22,788] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR30495210_1.fastq.gz [2026-05-21 21:41:22,789] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR30495210_2.fastq.gz [2026-05-21 21:41:22,921] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M09_SJ.out.tab [2026-05-21 21:41:22,924] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M09_SJ.out.tab [2026-05-21 21:41:22,925] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M09_SJ.out.tab [2026-05-21 21:41:22,925] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M09_SJ.out.tab [2026-05-21 21:41:22,930] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M09_SJ.out.tab [2026-05-21 21:41:22,930] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M09_SJ.out.tab [2026-05-21 21:41:22,930] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M09_SJ.out.tab [2026-05-21 21:41:22,930] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M09_SJ.out.tab [2026-05-21 21:41:22,930] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M09_SJ.out.tab [2026-05-21 21:41:22,930] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M09_SJ.out.tab [2026-05-21 21:41:22,930] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M09_SJ.out.tab [2026-05-21 21:41:22,930] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M09_SJ.out.tab [2026-05-21 21:41:22,930] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G256GSE276094_M09_SJ.out.tab [2026-05-21 21:41:22,930] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M09_SJ.out.tab [2026-05-21 21:41:25,286] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M09_marked_dup_metrics.txt [2026-05-21 21:41:25,290] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M09_marked_dup_metrics.txt [2026-05-21 21:41:25,290] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M09_marked_dup_metrics.txt [2026-05-21 21:41:25,290] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M09_marked_dup_metrics.txt [2026-05-21 21:41:25,296] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M09_marked_dup_metrics.txt [2026-05-21 21:41:25,310] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE276094_M09_hist.pdf [2026-05-21 21:41:25,315] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M09_metrics [2026-05-21 21:41:25,317] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M09_metrics [2026-05-21 21:41:25,318] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M09_metrics [2026-05-21 21:41:25,318] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M09_metrics [2026-05-21 21:41:25,321] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M09_metrics [2026-05-21 21:41:25,375] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:25,378] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:25,378] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:25,378] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:25,383] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:25,383] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:25,383] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:25,383] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:25,383] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:25,383] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:25,383] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:25,383] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:25,400] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:26,337] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:26,350] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:26,351] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:26,351] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:26,359] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:26,359] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:26,359] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:26,359] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:26,359] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:26,359] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:26,359] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:26,360] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:26,386] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M09_featureCounts.out [2026-05-21 21:41:27,310] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M09_metrics [2026-05-21 21:41:27,313] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M09_metrics [2026-05-21 21:41:27,319] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M09_metrics [2026-05-21 21:41:27,370] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR32914428_2.fastq.gz [2026-05-21 21:41:27,371] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR32914428_1.fastq.gz [2026-05-21 21:41:27,458] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M19_SJ.out.tab [2026-05-21 21:41:27,462] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M19_SJ.out.tab [2026-05-21 21:41:27,463] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M19_SJ.out.tab [2026-05-21 21:41:27,463] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M19_SJ.out.tab [2026-05-21 21:41:27,468] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M19_SJ.out.tab [2026-05-21 21:41:27,468] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M19_SJ.out.tab [2026-05-21 21:41:27,468] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M19_SJ.out.tab [2026-05-21 21:41:27,468] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M19_SJ.out.tab [2026-05-21 21:41:27,468] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M19_SJ.out.tab [2026-05-21 21:41:27,468] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M19_SJ.out.tab [2026-05-21 21:41:27,468] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M19_SJ.out.tab [2026-05-21 21:41:27,468] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M19_SJ.out.tab [2026-05-21 21:41:27,468] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G256GSE293314_M19_SJ.out.tab [2026-05-21 21:41:27,468] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M19_SJ.out.tab [2026-05-21 21:41:30,695] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M19_marked_dup_metrics.txt [2026-05-21 21:41:30,698] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M19_marked_dup_metrics.txt [2026-05-21 21:41:30,699] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M19_marked_dup_metrics.txt [2026-05-21 21:41:30,699] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M19_marked_dup_metrics.txt [2026-05-21 21:41:30,705] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M19_marked_dup_metrics.txt [2026-05-21 21:41:30,719] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M19_metrics [2026-05-21 21:41:30,721] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M19_metrics [2026-05-21 21:41:30,721] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M19_metrics [2026-05-21 21:41:30,721] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M19_metrics [2026-05-21 21:41:30,725] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M19_metrics [2026-05-21 21:41:30,826] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE293314_M19_hist.pdf [2026-05-21 21:41:30,851] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:30,853] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:30,854] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:30,854] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:30,858] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:30,858] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:30,858] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:30,858] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:30,858] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:30,858] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:30,858] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:30,858] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:30,877] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:31,795] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:31,798] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:31,814] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:31,814] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:31,822] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:31,822] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:31,822] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:31,822] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:31,822] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:31,822] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:31,822] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:31,822] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:31,845] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M19_featureCounts.out [2026-05-21 21:41:32,745] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M19_metrics [2026-05-21 21:41:32,748] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M19_metrics [2026-05-21 21:41:32,752] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M19_metrics [2026-05-21 21:41:32,788] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR32914432_1.fastq.gz [2026-05-21 21:41:32,789] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR32914432_2.fastq.gz [2026-05-21 21:41:32,879] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M27_SJ.out.tab [2026-05-21 21:41:32,882] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M27_SJ.out.tab [2026-05-21 21:41:32,883] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M27_SJ.out.tab [2026-05-21 21:41:32,883] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M27_SJ.out.tab [2026-05-21 21:41:32,889] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M27_SJ.out.tab [2026-05-21 21:41:32,889] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M27_SJ.out.tab [2026-05-21 21:41:32,889] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M27_SJ.out.tab [2026-05-21 21:41:32,889] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M27_SJ.out.tab [2026-05-21 21:41:32,889] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M27_SJ.out.tab [2026-05-21 21:41:32,889] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M27_SJ.out.tab [2026-05-21 21:41:32,889] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M27_SJ.out.tab [2026-05-21 21:41:32,889] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M27_SJ.out.tab [2026-05-21 21:41:32,889] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G256GSE293314_M27_SJ.out.tab [2026-05-21 21:41:32,890] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M27_SJ.out.tab [2026-05-21 21:41:35,593] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M27_marked_dup_metrics.txt [2026-05-21 21:41:35,596] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M27_marked_dup_metrics.txt [2026-05-21 21:41:35,596] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M27_marked_dup_metrics.txt [2026-05-21 21:41:35,596] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M27_marked_dup_metrics.txt [2026-05-21 21:41:35,602] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M27_marked_dup_metrics.txt [2026-05-21 21:41:35,619] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M27_metrics [2026-05-21 21:41:35,622] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M27_metrics [2026-05-21 21:41:35,622] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M27_metrics [2026-05-21 21:41:35,622] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M27_metrics [2026-05-21 21:41:35,626] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M27_metrics [2026-05-21 21:41:35,696] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE293314_M27_hist.pdf [2026-05-21 21:41:35,746] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:35,749] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:35,750] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:35,750] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:35,756] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:35,756] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:35,756] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:35,756] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:35,756] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:35,756] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:35,756] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:35,756] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:35,774] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:36,697] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:36,701] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:36,702] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:36,702] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:36,708] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:36,708] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:36,708] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:36,708] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:36,708] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:36,708] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:36,709] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:36,709] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:36,728] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M27_featureCounts.out [2026-05-21 21:41:37,607] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M27_metrics [2026-05-21 21:41:37,610] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M27_metrics [2026-05-21 21:41:37,615] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M27_metrics [2026-05-21 21:41:37,652] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR10027397_2.fastq.gz [2026-05-21 21:41:37,653] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR10027397_1.fastq.gz [2026-05-21 21:41:37,776] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE136173_M04_marked_dup_metrics.txt [2026-05-21 21:41:37,779] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE136173_M04_marked_dup_metrics.txt [2026-05-21 21:41:37,779] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE136173_M04_marked_dup_metrics.txt [2026-05-21 21:41:37,779] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE136173_M04_marked_dup_metrics.txt [2026-05-21 21:41:37,785] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE136173_M04_marked_dup_metrics.txt [2026-05-21 21:41:37,804] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE136173_M04_hist.pdf [2026-05-21 21:41:37,810] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE136173_M04_metrics [2026-05-21 21:41:37,813] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE136173_M04_metrics [2026-05-21 21:41:37,813] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE136173_M04_metrics [2026-05-21 21:41:37,813] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE136173_M04_metrics [2026-05-21 21:41:37,819] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE136173_M04_metrics [2026-05-21 21:41:37,890] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:37,893] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:37,893] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:37,893] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:37,898] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:37,899] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:37,899] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:37,899] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:37,899] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:37,899] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:37,899] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:37,899] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:37,916] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:38,844] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:38,849] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:38,849] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:38,849] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:38,854] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:38,854] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:38,854] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:38,854] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:38,855] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:38,855] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:38,855] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:38,855] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:38,874] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE136173_M04_featureCounts.out [2026-05-21 21:41:39,746] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE136173_M04_metrics [2026-05-21 21:41:39,748] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE136173_M04_metrics [2026-05-21 21:41:39,754] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE136173_M04_metrics [2026-05-21 21:41:39,795] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR32914425_2.fastq.gz [2026-05-21 21:41:39,796] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR32914425_1.fastq.gz [2026-05-21 21:41:39,861] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M22_SJ.out.tab [2026-05-21 21:41:39,865] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M22_SJ.out.tab [2026-05-21 21:41:39,866] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M22_SJ.out.tab [2026-05-21 21:41:39,866] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M22_SJ.out.tab [2026-05-21 21:41:39,872] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M22_SJ.out.tab [2026-05-21 21:41:39,872] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M22_SJ.out.tab [2026-05-21 21:41:39,872] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M22_SJ.out.tab [2026-05-21 21:41:39,872] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M22_SJ.out.tab [2026-05-21 21:41:39,872] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M22_SJ.out.tab [2026-05-21 21:41:39,872] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M22_SJ.out.tab [2026-05-21 21:41:39,872] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M22_SJ.out.tab [2026-05-21 21:41:39,872] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M22_SJ.out.tab [2026-05-21 21:41:39,872] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G256GSE293314_M22_SJ.out.tab [2026-05-21 21:41:39,872] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M22_SJ.out.tab [2026-05-21 21:41:43,094] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M22_marked_dup_metrics.txt [2026-05-21 21:41:43,098] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M22_marked_dup_metrics.txt [2026-05-21 21:41:43,099] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M22_marked_dup_metrics.txt [2026-05-21 21:41:43,099] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M22_marked_dup_metrics.txt [2026-05-21 21:41:43,105] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M22_marked_dup_metrics.txt [2026-05-21 21:41:43,131] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE293314_M22_hist.pdf [2026-05-21 21:41:43,137] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M22_metrics [2026-05-21 21:41:43,139] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M22_metrics [2026-05-21 21:41:43,139] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M22_metrics [2026-05-21 21:41:43,139] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M22_metrics [2026-05-21 21:41:43,143] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M22_metrics [2026-05-21 21:41:43,267] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:43,271] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:43,271] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:43,271] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:43,278] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:43,278] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:43,278] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:43,278] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:43,278] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:43,278] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:43,278] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:43,278] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:43,298] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:44,207] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:44,210] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:44,211] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:44,211] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:44,218] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:44,218] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:44,218] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:44,219] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:44,219] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:44,219] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:44,219] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:44,219] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:44,241] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M22_featureCounts.out [2026-05-21 21:41:45,136] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M22_metrics [2026-05-21 21:41:45,139] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M22_metrics [2026-05-21 21:41:45,144] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M22_metrics [2026-05-21 21:41:45,203] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR32914436_2.fastq.gz [2026-05-21 21:41:45,204] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR32914436_1.fastq.gz [2026-05-21 21:41:45,314] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M23_SJ.out.tab [2026-05-21 21:41:45,318] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M23_SJ.out.tab [2026-05-21 21:41:45,319] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M23_SJ.out.tab [2026-05-21 21:41:45,319] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M23_SJ.out.tab [2026-05-21 21:41:45,324] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M23_SJ.out.tab [2026-05-21 21:41:45,324] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M23_SJ.out.tab [2026-05-21 21:41:45,324] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M23_SJ.out.tab [2026-05-21 21:41:45,324] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M23_SJ.out.tab [2026-05-21 21:41:45,324] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M23_SJ.out.tab [2026-05-21 21:41:45,324] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M23_SJ.out.tab [2026-05-21 21:41:45,324] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M23_SJ.out.tab [2026-05-21 21:41:45,324] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M23_SJ.out.tab [2026-05-21 21:41:45,324] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G256GSE293314_M23_SJ.out.tab [2026-05-21 21:41:45,324] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M23_SJ.out.tab [2026-05-21 21:41:48,190] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M23_marked_dup_metrics.txt [2026-05-21 21:41:48,193] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M23_marked_dup_metrics.txt [2026-05-21 21:41:48,205] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M23_marked_dup_metrics.txt [2026-05-21 21:41:48,206] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M23_marked_dup_metrics.txt [2026-05-21 21:41:48,212] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M23_marked_dup_metrics.txt [2026-05-21 21:41:48,235] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M23_metrics [2026-05-21 21:41:48,238] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M23_metrics [2026-05-21 21:41:48,238] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M23_metrics [2026-05-21 21:41:48,238] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M23_metrics [2026-05-21 21:41:48,244] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M23_metrics [2026-05-21 21:41:48,315] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE293314_M23_hist.pdf [2026-05-21 21:41:48,373] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:48,377] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:48,378] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:48,378] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:48,384] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:48,384] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:48,384] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:48,384] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:48,384] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:48,384] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:48,384] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:48,384] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:48,404] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:49,324] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:49,328] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:49,329] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:49,329] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:49,334] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:49,335] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:49,335] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:49,335] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:49,335] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:49,335] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:49,335] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:49,335] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:49,354] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M23_featureCounts.out [2026-05-21 21:41:50,235] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M23_metrics [2026-05-21 21:41:50,239] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M23_metrics [2026-05-21 21:41:50,247] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M23_metrics [2026-05-21 21:41:50,297] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR30495205_2.fastq.gz [2026-05-21 21:41:50,297] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR30495205_1.fastq.gz [2026-05-21 21:41:50,379] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M14_SJ.out.tab [2026-05-21 21:41:50,382] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M14_SJ.out.tab [2026-05-21 21:41:50,383] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M14_SJ.out.tab [2026-05-21 21:41:50,383] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M14_SJ.out.tab [2026-05-21 21:41:50,388] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M14_SJ.out.tab [2026-05-21 21:41:50,388] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M14_SJ.out.tab [2026-05-21 21:41:50,388] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M14_SJ.out.tab [2026-05-21 21:41:50,388] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M14_SJ.out.tab [2026-05-21 21:41:50,388] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M14_SJ.out.tab [2026-05-21 21:41:50,388] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M14_SJ.out.tab [2026-05-21 21:41:50,388] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M14_SJ.out.tab [2026-05-21 21:41:50,388] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M14_SJ.out.tab [2026-05-21 21:41:50,388] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G256GSE276094_M14_SJ.out.tab [2026-05-21 21:41:50,388] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M14_SJ.out.tab [2026-05-21 21:41:52,762] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M14_marked_dup_metrics.txt [2026-05-21 21:41:52,764] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M14_marked_dup_metrics.txt [2026-05-21 21:41:52,765] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M14_marked_dup_metrics.txt [2026-05-21 21:41:52,765] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M14_marked_dup_metrics.txt [2026-05-21 21:41:52,769] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M14_marked_dup_metrics.txt [2026-05-21 21:41:52,797] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M14_metrics [2026-05-21 21:41:52,800] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M14_metrics [2026-05-21 21:41:52,800] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M14_metrics [2026-05-21 21:41:52,800] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M14_metrics [2026-05-21 21:41:52,806] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M14_metrics [2026-05-21 21:41:52,854] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE276094_M14_hist.pdf [2026-05-21 21:41:52,887] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:52,891] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:52,891] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:52,892] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:52,896] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:52,896] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:52,897] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:52,897] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:52,897] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:52,897] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:52,897] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:52,897] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:52,913] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:53,830] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:53,833] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:53,833] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:53,833] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:53,838] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:53,838] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:53,838] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:53,838] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:53,838] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:53,838] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:53,838] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:53,838] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:53,855] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M14_featureCounts.out [2026-05-21 21:41:54,753] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M14_metrics [2026-05-21 21:41:54,756] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M14_metrics [2026-05-21 21:41:54,759] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M14_metrics [2026-05-21 21:41:54,813] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR10027396_1.fastq.gz [2026-05-21 21:41:54,814] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR10027396_2.fastq.gz [2026-05-21 21:41:54,937] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE136173_M03_marked_dup_metrics.txt [2026-05-21 21:41:54,940] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE136173_M03_marked_dup_metrics.txt [2026-05-21 21:41:54,941] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE136173_M03_marked_dup_metrics.txt [2026-05-21 21:41:54,941] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE136173_M03_marked_dup_metrics.txt [2026-05-21 21:41:54,947] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE136173_M03_marked_dup_metrics.txt [2026-05-21 21:41:54,958] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE136173_M03_hist.pdf [2026-05-21 21:41:54,962] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE136173_M03_metrics [2026-05-21 21:41:54,965] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE136173_M03_metrics [2026-05-21 21:41:54,965] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE136173_M03_metrics [2026-05-21 21:41:54,965] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE136173_M03_metrics [2026-05-21 21:41:54,969] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE136173_M03_metrics [2026-05-21 21:41:55,051] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:55,055] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:55,056] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:55,056] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:55,061] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:55,061] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:55,061] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:55,062] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:55,062] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:55,062] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:55,062] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:55,062] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:55,081] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:56,001] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:56,004] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:56,005] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:56,005] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:56,011] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:56,011] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:56,011] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:56,011] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:56,011] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:56,011] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:56,011] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:56,011] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:56,030] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE136173_M03_featureCounts.out [2026-05-21 21:41:56,924] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE136173_M03_metrics [2026-05-21 21:41:56,926] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE136173_M03_metrics [2026-05-21 21:41:56,930] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE136173_M03_metrics [2026-05-21 21:41:56,977] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR30495212_1.fastq.gz [2026-05-21 21:41:56,978] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR30495212_2.fastq.gz [2026-05-21 21:41:57,106] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M07_SJ.out.tab [2026-05-21 21:41:57,110] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M07_SJ.out.tab [2026-05-21 21:41:57,110] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M07_SJ.out.tab [2026-05-21 21:41:57,110] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M07_SJ.out.tab [2026-05-21 21:41:57,115] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M07_SJ.out.tab [2026-05-21 21:41:57,115] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M07_SJ.out.tab [2026-05-21 21:41:57,115] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M07_SJ.out.tab [2026-05-21 21:41:57,115] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M07_SJ.out.tab [2026-05-21 21:41:57,115] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M07_SJ.out.tab [2026-05-21 21:41:57,115] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M07_SJ.out.tab [2026-05-21 21:41:57,115] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M07_SJ.out.tab [2026-05-21 21:41:57,115] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M07_SJ.out.tab [2026-05-21 21:41:57,115] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G256GSE276094_M07_SJ.out.tab [2026-05-21 21:41:57,115] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M07_SJ.out.tab [2026-05-21 21:41:59,393] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M07_marked_dup_metrics.txt [2026-05-21 21:41:59,397] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M07_marked_dup_metrics.txt [2026-05-21 21:41:59,397] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M07_marked_dup_metrics.txt [2026-05-21 21:41:59,397] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M07_marked_dup_metrics.txt [2026-05-21 21:41:59,403] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M07_marked_dup_metrics.txt [2026-05-21 21:41:59,422] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M07_metrics [2026-05-21 21:41:59,424] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M07_metrics [2026-05-21 21:41:59,425] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M07_metrics [2026-05-21 21:41:59,425] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M07_metrics [2026-05-21 21:41:59,430] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M07_metrics [2026-05-21 21:41:59,460] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE276094_M07_hist.pdf [2026-05-21 21:41:59,506] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:41:59,509] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:41:59,510] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:41:59,510] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:41:59,516] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:41:59,516] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:41:59,516] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:41:59,516] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:41:59,516] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:41:59,517] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:41:59,517] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:41:59,517] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:41:59,536] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:42:00,445] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:42:00,449] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:42:00,449] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:42:00,449] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:42:00,455] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:42:00,455] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:42:00,455] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:42:00,456] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:42:00,456] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:42:00,456] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:42:00,456] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:42:00,456] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:42:00,475] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M07_featureCounts.out [2026-05-21 21:42:01,359] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M07_metrics [2026-05-21 21:42:01,361] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M07_metrics [2026-05-21 21:42:01,365] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M07_metrics [2026-05-21 21:42:01,410] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR30495207_1.fastq.gz [2026-05-21 21:42:01,411] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR30495207_2.fastq.gz [2026-05-21 21:42:01,539] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M12_SJ.out.tab [2026-05-21 21:42:01,543] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M12_SJ.out.tab [2026-05-21 21:42:01,544] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M12_SJ.out.tab [2026-05-21 21:42:01,544] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M12_SJ.out.tab [2026-05-21 21:42:01,550] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M12_SJ.out.tab [2026-05-21 21:42:01,551] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M12_SJ.out.tab [2026-05-21 21:42:01,551] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M12_SJ.out.tab [2026-05-21 21:42:01,551] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M12_SJ.out.tab [2026-05-21 21:42:01,551] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M12_SJ.out.tab [2026-05-21 21:42:01,551] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M12_SJ.out.tab [2026-05-21 21:42:01,551] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M12_SJ.out.tab [2026-05-21 21:42:01,551] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M12_SJ.out.tab [2026-05-21 21:42:01,551] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G256GSE276094_M12_SJ.out.tab [2026-05-21 21:42:01,551] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M12_SJ.out.tab [2026-05-21 21:42:04,021] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M12_marked_dup_metrics.txt [2026-05-21 21:42:04,025] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M12_marked_dup_metrics.txt [2026-05-21 21:42:04,026] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M12_marked_dup_metrics.txt [2026-05-21 21:42:04,026] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M12_marked_dup_metrics.txt [2026-05-21 21:42:04,031] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M12_marked_dup_metrics.txt [2026-05-21 21:42:04,045] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE276094_M12_hist.pdf [2026-05-21 21:42:04,049] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M12_metrics [2026-05-21 21:42:04,051] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M12_metrics [2026-05-21 21:42:04,051] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M12_metrics [2026-05-21 21:42:04,051] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M12_metrics [2026-05-21 21:42:04,055] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M12_metrics [2026-05-21 21:42:04,136] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:04,140] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:04,140] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:04,141] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:04,147] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:04,147] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:04,147] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:04,147] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:04,147] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:04,147] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:04,147] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:04,147] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:04,167] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:05,075] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:05,079] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:05,089] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:05,089] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:05,097] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:05,097] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:05,097] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:05,097] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:05,097] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:05,097] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:05,097] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:05,097] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:05,120] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M12_featureCounts.out [2026-05-21 21:42:06,003] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M12_metrics [2026-05-21 21:42:06,005] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M12_metrics [2026-05-21 21:42:06,009] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M12_metrics [2026-05-21 21:42:06,061] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR10027395_2.fastq.gz [2026-05-21 21:42:06,062] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR10027395_1.fastq.gz [2026-05-21 21:42:06,169] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE136173_M02_marked_dup_metrics.txt [2026-05-21 21:42:06,171] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE136173_M02_marked_dup_metrics.txt [2026-05-21 21:42:06,172] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE136173_M02_marked_dup_metrics.txt [2026-05-21 21:42:06,172] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE136173_M02_marked_dup_metrics.txt [2026-05-21 21:42:06,177] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE136173_M02_marked_dup_metrics.txt [2026-05-21 21:42:06,208] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE136173_M02_metrics [2026-05-21 21:42:06,210] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE136173_M02_metrics [2026-05-21 21:42:06,211] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE136173_M02_metrics [2026-05-21 21:42:06,211] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE136173_M02_metrics [2026-05-21 21:42:06,216] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE136173_M02_metrics [2026-05-21 21:42:06,247] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE136173_M02_hist.pdf [2026-05-21 21:42:06,296] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:06,300] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:06,300] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:06,300] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:06,305] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:06,306] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:06,306] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:06,306] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:06,306] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:06,306] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:06,306] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:06,306] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:06,324] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:07,264] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:07,268] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:07,269] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:07,269] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:07,276] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:07,276] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:07,276] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:07,276] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:07,276] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:07,276] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:07,276] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:07,276] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:07,295] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE136173_M02_featureCounts.out [2026-05-21 21:42:08,179] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE136173_M02_metrics [2026-05-21 21:42:08,182] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE136173_M02_metrics [2026-05-21 21:42:08,186] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE136173_M02_metrics [2026-05-21 21:42:08,229] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR32914426_2.fastq.gz [2026-05-21 21:42:08,230] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR32914426_1.fastq.gz [2026-05-21 21:42:08,353] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M21_SJ.out.tab [2026-05-21 21:42:08,357] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M21_SJ.out.tab [2026-05-21 21:42:08,357] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M21_SJ.out.tab [2026-05-21 21:42:08,357] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M21_SJ.out.tab [2026-05-21 21:42:08,364] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M21_SJ.out.tab [2026-05-21 21:42:08,364] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M21_SJ.out.tab [2026-05-21 21:42:08,364] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M21_SJ.out.tab [2026-05-21 21:42:08,364] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M21_SJ.out.tab [2026-05-21 21:42:08,364] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M21_SJ.out.tab [2026-05-21 21:42:08,364] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M21_SJ.out.tab [2026-05-21 21:42:08,364] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M21_SJ.out.tab [2026-05-21 21:42:08,364] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M21_SJ.out.tab [2026-05-21 21:42:08,364] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G256GSE293314_M21_SJ.out.tab [2026-05-21 21:42:08,364] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M21_SJ.out.tab [2026-05-21 21:42:11,550] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M21_marked_dup_metrics.txt [2026-05-21 21:42:11,554] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M21_marked_dup_metrics.txt [2026-05-21 21:42:11,555] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M21_marked_dup_metrics.txt [2026-05-21 21:42:11,555] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M21_marked_dup_metrics.txt [2026-05-21 21:42:11,560] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M21_marked_dup_metrics.txt [2026-05-21 21:42:11,592] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M21_metrics [2026-05-21 21:42:11,595] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M21_metrics [2026-05-21 21:42:11,596] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M21_metrics [2026-05-21 21:42:11,596] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M21_metrics [2026-05-21 21:42:11,600] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M21_metrics [2026-05-21 21:42:11,712] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE293314_M21_hist.pdf [2026-05-21 21:42:11,756] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:11,759] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:11,760] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:11,760] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:11,765] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:11,766] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:11,766] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:11,766] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:11,766] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:11,766] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:11,766] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:11,766] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:11,784] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:12,723] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:12,727] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:12,728] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:12,728] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:12,733] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:12,733] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:12,733] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:12,733] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:12,733] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:12,733] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:12,733] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:12,733] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:12,752] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M21_featureCounts.out [2026-05-21 21:42:13,650] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M21_metrics [2026-05-21 21:42:13,653] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M21_metrics [2026-05-21 21:42:13,658] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M21_metrics [2026-05-21 21:42:13,699] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR32914427_1.fastq.gz [2026-05-21 21:42:13,700] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR32914427_2.fastq.gz [2026-05-21 21:42:13,755] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M20_SJ.out.tab [2026-05-21 21:42:13,758] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M20_SJ.out.tab [2026-05-21 21:42:13,759] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M20_SJ.out.tab [2026-05-21 21:42:13,759] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M20_SJ.out.tab [2026-05-21 21:42:13,763] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M20_SJ.out.tab [2026-05-21 21:42:13,763] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M20_SJ.out.tab [2026-05-21 21:42:13,763] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M20_SJ.out.tab [2026-05-21 21:42:13,763] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M20_SJ.out.tab [2026-05-21 21:42:13,763] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M20_SJ.out.tab [2026-05-21 21:42:13,763] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M20_SJ.out.tab [2026-05-21 21:42:13,763] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M20_SJ.out.tab [2026-05-21 21:42:13,763] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M20_SJ.out.tab [2026-05-21 21:42:13,764] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G256GSE293314_M20_SJ.out.tab [2026-05-21 21:42:13,764] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M20_SJ.out.tab [2026-05-21 21:42:17,052] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M20_marked_dup_metrics.txt [2026-05-21 21:42:17,055] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M20_marked_dup_metrics.txt [2026-05-21 21:42:17,056] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M20_marked_dup_metrics.txt [2026-05-21 21:42:17,056] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M20_marked_dup_metrics.txt [2026-05-21 21:42:17,062] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M20_marked_dup_metrics.txt [2026-05-21 21:42:17,087] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE293314_M20_hist.pdf [2026-05-21 21:42:17,091] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M20_metrics [2026-05-21 21:42:17,093] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M20_metrics [2026-05-21 21:42:17,093] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M20_metrics [2026-05-21 21:42:17,093] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M20_metrics [2026-05-21 21:42:17,097] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M20_metrics [2026-05-21 21:42:17,241] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:17,244] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:17,244] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:17,244] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:17,250] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:17,250] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:17,250] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:17,250] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:17,251] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:17,251] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:17,251] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:17,251] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:17,275] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:18,203] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:18,207] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:18,208] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:18,208] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:18,216] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:18,216] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:18,216] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:18,216] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:18,216] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:18,216] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:18,216] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:18,216] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:18,236] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M20_featureCounts.out [2026-05-21 21:42:19,149] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M20_metrics [2026-05-21 21:42:19,152] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M20_metrics [2026-05-21 21:42:19,156] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M20_metrics [2026-05-21 21:42:19,203] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR32914434_2.fastq.gz [2026-05-21 21:42:19,203] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR32914434_1.fastq.gz [2026-05-21 21:42:19,296] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M25_SJ.out.tab [2026-05-21 21:42:19,299] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M25_SJ.out.tab [2026-05-21 21:42:19,299] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M25_SJ.out.tab [2026-05-21 21:42:19,299] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M25_SJ.out.tab [2026-05-21 21:42:19,305] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M25_SJ.out.tab [2026-05-21 21:42:19,305] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M25_SJ.out.tab [2026-05-21 21:42:19,305] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M25_SJ.out.tab [2026-05-21 21:42:19,305] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M25_SJ.out.tab [2026-05-21 21:42:19,305] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M25_SJ.out.tab [2026-05-21 21:42:19,305] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M25_SJ.out.tab [2026-05-21 21:42:19,305] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M25_SJ.out.tab [2026-05-21 21:42:19,305] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M25_SJ.out.tab [2026-05-21 21:42:19,305] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G256GSE293314_M25_SJ.out.tab [2026-05-21 21:42:19,305] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M25_SJ.out.tab [2026-05-21 21:42:22,193] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M25_marked_dup_metrics.txt [2026-05-21 21:42:22,197] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M25_marked_dup_metrics.txt [2026-05-21 21:42:22,206] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M25_marked_dup_metrics.txt [2026-05-21 21:42:22,206] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M25_marked_dup_metrics.txt [2026-05-21 21:42:22,212] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M25_marked_dup_metrics.txt [2026-05-21 21:42:22,228] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE293314_M25_hist.pdf [2026-05-21 21:42:22,237] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M25_metrics [2026-05-21 21:42:22,241] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M25_metrics [2026-05-21 21:42:22,241] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M25_metrics [2026-05-21 21:42:22,241] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M25_metrics [2026-05-21 21:42:22,246] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M25_metrics [2026-05-21 21:42:22,363] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M25_featureCounts.out [2026-05-21 21:42:22,367] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M25_featureCounts.out [2026-05-21 21:42:22,368] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: 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[2026-05-21 21:42:22,374] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M25_featureCounts.out [2026-05-21 21:42:22,374] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M25_featureCounts.out [2026-05-21 21:42:22,374] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M25_featureCounts.out [2026-05-21 21:42:22,393] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M25_featureCounts.out [2026-05-21 21:42:23,329] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M25_featureCounts.out [2026-05-21 21:42:23,332] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M25_featureCounts.out [2026-05-21 21:42:23,333] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M25_featureCounts.out [2026-05-21 21:42:23,333] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M25_featureCounts.out [2026-05-21 21:42:23,339] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M25_featureCounts.out [2026-05-21 21:42:23,339] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M25_featureCounts.out [2026-05-21 21:42:23,339] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M25_featureCounts.out [2026-05-21 21:42:23,339] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M25_featureCounts.out [2026-05-21 21:42:23,339] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M25_featureCounts.out [2026-05-21 21:42:23,339] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M25_featureCounts.out [2026-05-21 21:42:23,339] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M25_featureCounts.out [2026-05-21 21:42:23,339] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M25_featureCounts.out [2026-05-21 21:42:23,358] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M25_featureCounts.out [2026-05-21 21:42:24,255] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M25_metrics [2026-05-21 21:42:24,258] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M25_metrics [2026-05-21 21:42:24,262] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M25_metrics [2026-05-21 21:42:24,306] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR10027394_2.fastq.gz [2026-05-21 21:42:24,308] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR10027394_1.fastq.gz [2026-05-21 21:42:24,462] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE136173_M01_marked_dup_metrics.txt [2026-05-21 21:42:24,466] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE136173_M01_marked_dup_metrics.txt [2026-05-21 21:42:24,466] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE136173_M01_marked_dup_metrics.txt [2026-05-21 21:42:24,466] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE136173_M01_marked_dup_metrics.txt [2026-05-21 21:42:24,473] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE136173_M01_marked_dup_metrics.txt [2026-05-21 21:42:24,495] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE136173_M01_metrics [2026-05-21 21:42:24,497] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE136173_M01_metrics [2026-05-21 21:42:24,497] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE136173_M01_metrics [2026-05-21 21:42:24,497] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE136173_M01_metrics [2026-05-21 21:42:24,501] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE136173_M01_metrics [2026-05-21 21:42:24,530] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE136173_M01_hist.pdf [2026-05-21 21:42:24,559] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:24,563] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:24,563] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:24,564] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:24,568] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:24,569] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:24,569] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:24,569] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:24,569] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:24,569] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:24,569] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:24,569] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:24,587] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:25,517] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:25,521] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:25,522] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:25,522] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:25,527] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:25,527] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:25,527] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:25,527] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:25,527] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:25,528] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:25,528] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:25,528] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:25,554] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE136173_M01_featureCounts.out [2026-05-21 21:42:26,471] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE136173_M01_metrics [2026-05-21 21:42:26,476] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE136173_M01_metrics [2026-05-21 21:42:26,482] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE136173_M01_metrics [2026-05-21 21:42:26,528] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR30495206_2.fastq.gz [2026-05-21 21:42:26,529] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR30495206_1.fastq.gz [2026-05-21 21:42:26,655] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M13_SJ.out.tab [2026-05-21 21:42:26,658] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M13_SJ.out.tab [2026-05-21 21:42:26,659] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M13_SJ.out.tab [2026-05-21 21:42:26,659] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M13_SJ.out.tab [2026-05-21 21:42:26,665] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M13_SJ.out.tab [2026-05-21 21:42:26,665] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M13_SJ.out.tab [2026-05-21 21:42:26,665] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M13_SJ.out.tab [2026-05-21 21:42:26,665] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M13_SJ.out.tab [2026-05-21 21:42:26,665] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M13_SJ.out.tab [2026-05-21 21:42:26,666] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M13_SJ.out.tab [2026-05-21 21:42:26,666] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M13_SJ.out.tab [2026-05-21 21:42:26,666] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M13_SJ.out.tab [2026-05-21 21:42:26,666] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G256GSE276094_M13_SJ.out.tab [2026-05-21 21:42:26,666] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M13_SJ.out.tab [2026-05-21 21:42:29,181] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M13_marked_dup_metrics.txt [2026-05-21 21:42:29,184] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M13_marked_dup_metrics.txt [2026-05-21 21:42:29,184] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M13_marked_dup_metrics.txt [2026-05-21 21:42:29,184] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M13_marked_dup_metrics.txt [2026-05-21 21:42:29,190] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M13_marked_dup_metrics.txt [2026-05-21 21:42:29,221] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M13_metrics [2026-05-21 21:42:29,225] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M13_metrics [2026-05-21 21:42:29,226] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M13_metrics [2026-05-21 21:42:29,226] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M13_metrics [2026-05-21 21:42:29,234] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M13_metrics [2026-05-21 21:42:29,273] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE276094_M13_hist.pdf [2026-05-21 21:42:29,318] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M13_featureCounts.out [2026-05-21 21:42:29,321] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M13_featureCounts.out [2026-05-21 21:42:29,321] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M13_featureCounts.out [2026-05-21 21:42:29,321] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M13_featureCounts.out [2026-05-21 21:42:29,327] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M13_featureCounts.out [2026-05-21 21:42:29,327] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M13_featureCounts.out [2026-05-21 21:42:29,327] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M13_featureCounts.out [2026-05-21 21:42:29,327] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M13_featureCounts.out [2026-05-21 21:42:29,327] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M13_featureCounts.out [2026-05-21 21:42:29,327] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M13_featureCounts.out [2026-05-21 21:42:29,327] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M13_featureCounts.out [2026-05-21 21:42:29,327] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M13_featureCounts.out [2026-05-21 21:42:29,348] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: 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21:42:30,307] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M13_featureCounts.out [2026-05-21 21:42:30,307] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M13_featureCounts.out [2026-05-21 21:42:30,307] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M13_featureCounts.out [2026-05-21 21:42:30,307] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M13_featureCounts.out [2026-05-21 21:42:30,307] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M13_featureCounts.out [2026-05-21 21:42:30,307] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M13_featureCounts.out [2026-05-21 21:42:30,327] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M13_featureCounts.out [2026-05-21 21:42:31,232] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M13_metrics [2026-05-21 21:42:31,235] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M13_metrics [2026-05-21 21:42:31,239] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M13_metrics [2026-05-21 21:42:31,281] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR32914429_1.fastq.gz [2026-05-21 21:42:31,282] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR32914429_2.fastq.gz [2026-05-21 21:42:31,349] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M18_SJ.out.tab [2026-05-21 21:42:31,353] multiqc 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limit: G256GSE293314_M18_SJ.out.tab [2026-05-21 21:42:31,362] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M18_SJ.out.tab [2026-05-21 21:42:31,362] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M18_SJ.out.tab [2026-05-21 21:42:31,362] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M18_SJ.out.tab [2026-05-21 21:42:31,362] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M18_SJ.out.tab [2026-05-21 21:42:31,363] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G256GSE293314_M18_SJ.out.tab [2026-05-21 21:42:31,363] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M18_SJ.out.tab [2026-05-21 21:42:34,673] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M18_marked_dup_metrics.txt [2026-05-21 21:42:34,677] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M18_marked_dup_metrics.txt [2026-05-21 21:42:34,677] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M18_marked_dup_metrics.txt [2026-05-21 21:42:34,678] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M18_marked_dup_metrics.txt [2026-05-21 21:42:34,684] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M18_marked_dup_metrics.txt [2026-05-21 21:42:34,722] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M18_metrics [2026-05-21 21:42:34,726] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M18_metrics [2026-05-21 21:42:34,726] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M18_metrics [2026-05-21 21:42:34,726] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M18_metrics [2026-05-21 21:42:34,733] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M18_metrics [2026-05-21 21:42:34,830] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE293314_M18_hist.pdf [2026-05-21 21:42:34,853] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M18_featureCounts.out [2026-05-21 21:42:34,856] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M18_featureCounts.out [2026-05-21 21:42:34,857] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M18_featureCounts.out [2026-05-21 21:42:34,857] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M18_featureCounts.out [2026-05-21 21:42:34,863] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M18_featureCounts.out [2026-05-21 21:42:34,863] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M18_featureCounts.out [2026-05-21 21:42:34,863] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M18_featureCounts.out [2026-05-21 21:42:34,863] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M18_featureCounts.out [2026-05-21 21:42:34,863] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M18_featureCounts.out [2026-05-21 21:42:34,863] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M18_featureCounts.out [2026-05-21 21:42:34,863] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M18_featureCounts.out [2026-05-21 21:42:34,863] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M18_featureCounts.out [2026-05-21 21:42:34,881] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M18_featureCounts.out [2026-05-21 21:42:35,820] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M18_featureCounts.out [2026-05-21 21:42:35,824] multiqc [DEBUG ] File ignored by 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pattern filesize limit: G256GSE293314_M18_featureCounts.out [2026-05-21 21:42:35,830] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M18_featureCounts.out [2026-05-21 21:42:35,830] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M18_featureCounts.out [2026-05-21 21:42:35,830] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M18_featureCounts.out [2026-05-21 21:42:35,831] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M18_featureCounts.out [2026-05-21 21:42:35,850] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M18_featureCounts.out [2026-05-21 21:42:36,780] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M18_metrics [2026-05-21 21:42:36,784] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M18_metrics [2026-05-21 21:42:36,791] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M18_metrics [2026-05-21 21:42:36,850] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR30495211_1.fastq.gz [2026-05-21 21:42:36,850] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR30495211_2.fastq.gz [2026-05-21 21:42:36,919] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M08_SJ.out.tab [2026-05-21 21:42:36,923] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M08_SJ.out.tab [2026-05-21 21:42:36,924] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M08_SJ.out.tab [2026-05-21 21:42:36,924] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M08_SJ.out.tab [2026-05-21 21:42:36,931] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M08_SJ.out.tab [2026-05-21 21:42:36,931] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M08_SJ.out.tab [2026-05-21 21:42:36,931] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M08_SJ.out.tab [2026-05-21 21:42:36,931] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M08_SJ.out.tab [2026-05-21 21:42:36,931] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M08_SJ.out.tab [2026-05-21 21:42:36,931] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M08_SJ.out.tab [2026-05-21 21:42:36,931] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M08_SJ.out.tab [2026-05-21 21:42:36,931] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M08_SJ.out.tab [2026-05-21 21:42:36,931] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G256GSE276094_M08_SJ.out.tab [2026-05-21 21:42:36,931] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M08_SJ.out.tab [2026-05-21 21:42:39,337] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M08_marked_dup_metrics.txt [2026-05-21 21:42:39,341] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M08_marked_dup_metrics.txt [2026-05-21 21:42:39,342] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M08_marked_dup_metrics.txt [2026-05-21 21:42:39,342] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M08_marked_dup_metrics.txt [2026-05-21 21:42:39,348] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M08_marked_dup_metrics.txt [2026-05-21 21:42:39,387] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M08_metrics [2026-05-21 21:42:39,391] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M08_metrics [2026-05-21 21:42:39,391] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M08_metrics [2026-05-21 21:42:39,391] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M08_metrics [2026-05-21 21:42:39,397] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M08_metrics [2026-05-21 21:42:39,426] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE276094_M08_hist.pdf [2026-05-21 21:42:39,453] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:39,457] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:39,458] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:39,458] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:39,463] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:39,463] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:39,463] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:39,463] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:39,463] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:39,463] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:39,463] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:39,464] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:39,483] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:40,422] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:40,426] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:40,427] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:40,427] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:40,433] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:40,433] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:40,434] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:40,434] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:40,434] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:40,434] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:40,434] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:40,434] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:40,453] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M08_featureCounts.out [2026-05-21 21:42:41,394] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M08_metrics [2026-05-21 21:42:41,396] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M08_metrics [2026-05-21 21:42:41,400] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M08_metrics [2026-05-21 21:42:41,440] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR32914433_1.fastq.gz [2026-05-21 21:42:41,441] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR32914433_2.fastq.gz [2026-05-21 21:42:41,574] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M26_SJ.out.tab [2026-05-21 21:42:41,578] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M26_SJ.out.tab [2026-05-21 21:42:41,578] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M26_SJ.out.tab [2026-05-21 21:42:41,578] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M26_SJ.out.tab [2026-05-21 21:42:41,586] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M26_SJ.out.tab [2026-05-21 21:42:41,586] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M26_SJ.out.tab [2026-05-21 21:42:41,586] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M26_SJ.out.tab [2026-05-21 21:42:41,586] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M26_SJ.out.tab [2026-05-21 21:42:41,586] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M26_SJ.out.tab [2026-05-21 21:42:41,586] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M26_SJ.out.tab [2026-05-21 21:42:41,586] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M26_SJ.out.tab [2026-05-21 21:42:41,586] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M26_SJ.out.tab [2026-05-21 21:42:41,586] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G256GSE293314_M26_SJ.out.tab [2026-05-21 21:42:41,586] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M26_SJ.out.tab [2026-05-21 21:42:44,339] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M26_marked_dup_metrics.txt [2026-05-21 21:42:44,343] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M26_marked_dup_metrics.txt [2026-05-21 21:42:44,358] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M26_marked_dup_metrics.txt [2026-05-21 21:42:44,358] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M26_marked_dup_metrics.txt [2026-05-21 21:42:44,366] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M26_marked_dup_metrics.txt [2026-05-21 21:42:44,382] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE293314_M26_hist.pdf [2026-05-21 21:42:44,388] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M26_metrics [2026-05-21 21:42:44,391] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M26_metrics [2026-05-21 21:42:44,391] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M26_metrics [2026-05-21 21:42:44,391] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M26_metrics [2026-05-21 21:42:44,397] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M26_metrics [2026-05-21 21:42:44,491] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:44,493] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:44,494] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:44,494] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:44,499] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:44,499] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:44,499] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:44,499] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:44,499] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:44,500] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:44,500] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:44,500] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:44,520] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:45,459] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:45,464] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:45,464] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:45,464] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:45,470] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:45,471] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:45,471] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:45,471] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:45,471] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:45,471] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:45,471] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:45,471] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:45,490] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M26_featureCounts.out [2026-05-21 21:42:46,425] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M26_metrics [2026-05-21 21:42:46,429] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M26_metrics [2026-05-21 21:42:46,435] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M26_metrics [2026-05-21 21:42:46,483] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR30495214_1.fastq.gz [2026-05-21 21:42:46,484] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR30495214_2.fastq.gz [2026-05-21 21:42:46,625] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M05_SJ.out.tab [2026-05-21 21:42:46,629] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M05_SJ.out.tab [2026-05-21 21:42:46,629] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M05_SJ.out.tab [2026-05-21 21:42:46,630] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M05_SJ.out.tab [2026-05-21 21:42:46,635] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M05_SJ.out.tab [2026-05-21 21:42:46,635] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M05_SJ.out.tab [2026-05-21 21:42:46,635] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M05_SJ.out.tab [2026-05-21 21:42:46,635] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M05_SJ.out.tab [2026-05-21 21:42:46,635] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M05_SJ.out.tab [2026-05-21 21:42:46,635] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M05_SJ.out.tab [2026-05-21 21:42:46,635] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M05_SJ.out.tab [2026-05-21 21:42:46,635] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M05_SJ.out.tab [2026-05-21 21:42:46,635] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G256GSE276094_M05_SJ.out.tab [2026-05-21 21:42:46,635] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M05_SJ.out.tab [2026-05-21 21:42:48,972] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M05_marked_dup_metrics.txt [2026-05-21 21:42:48,976] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M05_marked_dup_metrics.txt [2026-05-21 21:42:48,976] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M05_marked_dup_metrics.txt [2026-05-21 21:42:48,976] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M05_marked_dup_metrics.txt [2026-05-21 21:42:48,982] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M05_marked_dup_metrics.txt [2026-05-21 21:42:49,003] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE276094_M05_hist.pdf [2026-05-21 21:42:49,029] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M05_metrics [2026-05-21 21:42:49,033] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M05_metrics [2026-05-21 21:42:49,033] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M05_metrics [2026-05-21 21:42:49,033] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M05_metrics [2026-05-21 21:42:49,040] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M05_metrics [2026-05-21 21:42:49,116] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:49,120] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:49,120] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:49,121] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:49,125] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:49,126] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:49,126] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:49,126] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:49,126] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:49,126] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:49,126] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:49,126] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:49,145] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:50,076] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:50,080] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:50,091] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:50,091] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:50,096] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:50,096] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:50,097] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:50,097] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:50,097] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:50,097] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:50,097] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:50,097] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:50,117] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M05_featureCounts.out [2026-05-21 21:42:51,007] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M05_metrics [2026-05-21 21:42:51,010] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M05_metrics [2026-05-21 21:42:51,015] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M05_metrics [2026-05-21 21:42:51,055] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR32914435_1.fastq.gz [2026-05-21 21:42:51,055] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR32914435_2.fastq.gz [2026-05-21 21:42:51,192] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M24_SJ.out.tab [2026-05-21 21:42:51,195] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M24_SJ.out.tab [2026-05-21 21:42:51,196] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M24_SJ.out.tab [2026-05-21 21:42:51,196] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M24_SJ.out.tab [2026-05-21 21:42:51,201] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M24_SJ.out.tab [2026-05-21 21:42:51,201] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M24_SJ.out.tab [2026-05-21 21:42:51,201] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M24_SJ.out.tab [2026-05-21 21:42:51,202] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M24_SJ.out.tab [2026-05-21 21:42:51,202] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M24_SJ.out.tab [2026-05-21 21:42:51,202] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M24_SJ.out.tab [2026-05-21 21:42:51,202] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M24_SJ.out.tab [2026-05-21 21:42:51,202] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M24_SJ.out.tab [2026-05-21 21:42:51,202] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G256GSE293314_M24_SJ.out.tab [2026-05-21 21:42:51,202] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M24_SJ.out.tab [2026-05-21 21:42:54,151] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M24_marked_dup_metrics.txt [2026-05-21 21:42:54,155] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M24_marked_dup_metrics.txt [2026-05-21 21:42:54,155] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M24_marked_dup_metrics.txt [2026-05-21 21:42:54,155] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M24_marked_dup_metrics.txt [2026-05-21 21:42:54,161] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M24_marked_dup_metrics.txt [2026-05-21 21:42:54,176] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE293314_M24_hist.pdf [2026-05-21 21:42:54,181] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M24_metrics [2026-05-21 21:42:54,182] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M24_metrics [2026-05-21 21:42:54,183] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M24_metrics [2026-05-21 21:42:54,183] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M24_metrics [2026-05-21 21:42:54,186] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M24_metrics [2026-05-21 21:42:54,284] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M24_featureCounts.out [2026-05-21 21:42:54,288] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M24_featureCounts.out [2026-05-21 21:42:54,288] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M24_featureCounts.out [2026-05-21 21:42:54,289] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M24_featureCounts.out [2026-05-21 21:42:54,295] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M24_featureCounts.out [2026-05-21 21:42:54,295] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M24_featureCounts.out [2026-05-21 21:42:54,295] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M24_featureCounts.out [2026-05-21 21:42:54,295] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G256GSE293314_M24_featureCounts.out [2026-05-21 21:42:54,295] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G256GSE293314_M24_featureCounts.out [2026-05-21 21:42:54,295] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE293314_M24_featureCounts.out [2026-05-21 21:42:54,295] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE293314_M24_featureCounts.out [2026-05-21 21:42:54,295] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M24_featureCounts.out [2026-05-21 21:42:54,314] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M24_featureCounts.out [2026-05-21 21:42:55,244] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M24_featureCounts.out [2026-05-21 21:42:55,247] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M24_featureCounts.out [2026-05-21 21:42:55,258] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M24_featureCounts.out [2026-05-21 21:42:55,258] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M24_featureCounts.out [2026-05-21 21:42:55,265] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G256GSE293314_M24_featureCounts.out [2026-05-21 21:42:55,265] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G256GSE293314_M24_featureCounts.out [2026-05-21 21:42:55,265] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M24_featureCounts.out [2026-05-21 21:42:55,265] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search 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ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M16_SJ.out.tab [2026-05-21 21:42:56,434] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M16_SJ.out.tab [2026-05-21 21:42:56,434] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M16_SJ.out.tab [2026-05-21 21:42:56,434] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G256GSE276094_M16_SJ.out.tab [2026-05-21 21:42:56,434] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M16_SJ.out.tab [2026-05-21 21:42:58,797] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M16_marked_dup_metrics.txt [2026-05-21 21:42:58,802] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M16_marked_dup_metrics.txt [2026-05-21 21:42:58,803] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M16_marked_dup_metrics.txt [2026-05-21 21:42:58,803] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M16_marked_dup_metrics.txt [2026-05-21 21:42:58,809] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M16_marked_dup_metrics.txt [2026-05-21 21:42:58,831] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M16_metrics [2026-05-21 21:42:58,835] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M16_metrics [2026-05-21 21:42:58,835] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M16_metrics [2026-05-21 21:42:58,835] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M16_metrics [2026-05-21 21:42:58,840] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M16_metrics [2026-05-21 21:42:58,872] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE276094_M16_hist.pdf [2026-05-21 21:42:58,893] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M16_featureCounts.out [2026-05-21 21:42:58,897] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE276094_M16_featureCounts.out [2026-05-21 21:42:58,897] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE276094_M16_featureCounts.out [2026-05-21 21:42:58,897] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern 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[2026-05-21 21:42:59,891] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G256GSE276094_M16_featureCounts.out [2026-05-21 21:42:59,891] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G256GSE276094_M16_featureCounts.out [2026-05-21 21:42:59,891] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE276094_M16_featureCounts.out [2026-05-21 21:42:59,913] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE276094_M16_featureCounts.out [2026-05-21 21:43:00,839] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE276094_M16_metrics [2026-05-21 21:43:00,841] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE276094_M16_metrics [2026-05-21 21:43:00,862] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE276094_M16_metrics [2026-05-21 21:43:00,910] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR32914430_2.fastq.gz [2026-05-21 21:43:00,911] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: SRR32914430_1.fastq.gz [2026-05-21 21:43:01,008] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M17_SJ.out.tab [2026-05-21 21:43:01,011] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M17_SJ.out.tab [2026-05-21 21:43:01,012] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M17_SJ.out.tab [2026-05-21 21:43:01,012] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M17_SJ.out.tab [2026-05-21 21:43:01,017] multiqc [DEBUG ] File ignored by 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21:43:04,246] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M17_marked_dup_metrics.txt [2026-05-21 21:43:04,253] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G256GSE293314_M17_marked_dup_metrics.txt [2026-05-21 21:43:04,266] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G256GSE293314_M17_hist.pdf [2026-05-21 21:43:04,271] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M17_metrics [2026-05-21 21:43:04,274] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M17_metrics [2026-05-21 21:43:04,274] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M17_metrics [2026-05-21 21:43:04,274] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 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] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G256GSE293314_M17_featureCounts.out [2026-05-21 21:43:04,420] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G256GSE293314_M17_featureCounts.out [2026-05-21 21:43:05,363] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G256GSE293314_M17_featureCounts.out [2026-05-21 21:43:05,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G256GSE293314_M17_featureCounts.out [2026-05-21 21:43:05,367] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G256GSE293314_M17_featureCounts.out [2026-05-21 21:43:05,367] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G256GSE293314_M17_featureCounts.out [2026-05-21 21:43:05,373] multiqc [DEBUG ] File ignored by vep/vep_html because it 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21:43:06,381] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-05-21 21:43:06,389] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-05-21 21:43:06,408] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-05-21 21:43:06,413] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-05-21 21:43:06,418] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-05-21 21:43:06,431] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-05-21 21:43:06,434] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-05-21 21:43:06,457] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2026-05-21 21:43:06,459] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2026-05-21 21:43:06,464] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2026-05-21 21:43:06,479] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2026-05-21 21:43:06,482] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2026-05-21 21:43:06,508] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G256_AML12_cells_Various_Studies_G256GSE276094_M13.o5761786 [2026-05-21 21:43:06,510] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 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21:43:20,958] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-05-21 21:43:20,962] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-05-21 21:43:20,974] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-05-21 21:43:20,977] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-05-21 21:43:20,981] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-05-21 21:43:20,988] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2026-05-21 21:43:21,019] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2026-05-21 21:43:21,022] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2026-05-21 21:43:21,023] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2026-05-21 21:43:21,023] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2026-05-21 21:43:21,028] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2026-05-21 21:43:21,028] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2026-05-21 21:43:21,028] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2026-05-21 21:43:21,028] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2026-05-21 21:43:21,028] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2026-05-21 21:43:21,028] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2026-05-21 21:43:21,028] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2026-05-21 21:43:21,028] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2026-05-21 21:43:21,028] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2026-05-21 21:43:21,028] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2026-05-21 21:43:21,849] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-05-21 21:43:21,852] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-05-21 21:43:21,852] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-05-21 21:43:21,852] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-05-21 21:43:21,856] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-05-21 21:43:21,913] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-05-21 21:43:21,917] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-05-21 21:43:21,918] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-05-21 21:43:21,918] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-05-21 21:43:21,924] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-05-21 21:43:24,653] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2026-05-21 21:43:24,663] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2026-05-21 21:43:24,666] multiqc [DEBUG ] No samples found: custom_content [2026-05-21 21:43:24,686] multiqc [DEBUG ] No samples found: ccs [2026-05-21 21:43:24,713] multiqc [DEBUG ] No samples found: ngsderive [2026-05-21 21:43:24,732] multiqc [DEBUG ] No samples found: purple [2026-05-21 21:43:24,741] multiqc [DEBUG ] No samples found: conpair [2026-05-21 21:43:24,773] multiqc [DEBUG ] No samples found: lima [2026-05-21 21:43:24,789] multiqc [DEBUG ] No samples found: peddy [2026-05-21 21:43:24,805] multiqc [DEBUG ] No samples found: somalier [2026-05-21 21:43:24,826] multiqc [DEBUG ] No samples found: methylQA [2026-05-21 21:43:24,861] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2026-05-21 21:43:24,861] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2026-05-21 21:43:24,861] multiqc [DEBUG ] No samples found: mosdepth [2026-05-21 21:43:24,869] multiqc [DEBUG ] No samples found: phantompeakqualtools [2026-05-21 21:43:24,879] multiqc [DEBUG ] No samples found: qualimap [2026-05-21 21:43:24,899] multiqc [DEBUG ] No samples found: preseq [2026-05-21 21:43:24,919] multiqc [DEBUG ] No samples found: quast [2026-05-21 21:43:24,941] multiqc [DEBUG ] No samples found: qorts [2026-05-21 21:43:24,961] multiqc [DEBUG ] No samples found: rna_seqc [2026-05-21 21:43:24,982] multiqc [DEBUG ] No samples found: rockhopper [2026-05-21 21:43:25,002] multiqc [DEBUG ] No samples found: rsem [2026-05-21 21:43:25,079] multiqc.modules.rseqc.rseqc [INFO ] Found 28 infer_experiment reports [2026-05-21 21:43:25,096] multiqc [DEBUG ] No samples found: busco [2026-05-21 21:43:25,115] multiqc [DEBUG ] No samples found: bustools [2026-05-21 21:43:25,139] multiqc [DEBUG ] No samples found: goleft_indexcov [2026-05-21 21:43:25,162] multiqc [DEBUG ] No samples found: gffcompare [2026-05-21 21:43:25,171] multiqc [DEBUG ] No samples found: disambiguate [2026-05-21 21:43:25,196] multiqc [DEBUG ] No samples found: supernova [2026-05-21 21:43:25,294] multiqc [DEBUG ] No samples found: deeptools [2026-05-21 21:43:25,309] multiqc [DEBUG ] No samples found: sargasso [2026-05-21 21:43:25,337] multiqc [DEBUG ] No samples found: verifybamid [2026-05-21 21:43:25,363] multiqc [DEBUG ] No samples found: mirtrace [2026-05-21 21:43:25,381] multiqc [DEBUG ] No samples found: happy [2026-05-21 21:43:25,399] multiqc [DEBUG ] No samples found: mirtop [2026-05-21 21:43:25,421] multiqc [DEBUG ] No samples found: sambamba [2026-05-21 21:43:25,453] multiqc [DEBUG ] No samples found: homer [2026-05-21 21:43:25,470] multiqc [DEBUG ] No samples found: hops [2026-05-21 21:43:25,494] multiqc [DEBUG ] No samples found: macs2 [2026-05-21 21:43:25,503] multiqc [DEBUG ] No samples found: theta2 [2026-05-21 21:43:25,517] multiqc [DEBUG ] No samples found: snpeff [2026-05-21 21:43:25,552] multiqc [DEBUG ] No samples found: gatk [2026-05-21 21:43:25,561] multiqc [DEBUG ] No samples found: htseq [2026-05-21 21:43:25,583] multiqc [DEBUG ] No samples found: bcftools [2026-05-21 21:43:25,612] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE276094_M11_sorted [2026-05-21 21:43:25,614] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE293314_M28_sorted [2026-05-21 21:43:25,618] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE276094_M15_sorted [2026-05-21 21:43:25,621] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE276094_M10_sorted [2026-05-21 21:43:25,625] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE276094_M06_sorted [2026-05-21 21:43:25,630] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE276094_M09_sorted [2026-05-21 21:43:25,635] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE293314_M19_sorted [2026-05-21 21:43:25,638] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE293314_M27_sorted [2026-05-21 21:43:25,641] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE136173_M04_sorted [2026-05-21 21:43:25,644] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE293314_M22_sorted [2026-05-21 21:43:25,648] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE293314_M23_sorted [2026-05-21 21:43:25,651] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE276094_M14_sorted [2026-05-21 21:43:25,654] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE136173_M03_sorted [2026-05-21 21:43:25,657] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE276094_M07_sorted [2026-05-21 21:43:25,660] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE276094_M12_sorted [2026-05-21 21:43:25,663] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE136173_M02_sorted [2026-05-21 21:43:25,666] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE293314_M21_sorted [2026-05-21 21:43:25,669] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE293314_M20_sorted [2026-05-21 21:43:25,673] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE293314_M25_sorted [2026-05-21 21:43:25,677] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE136173_M01_sorted [2026-05-21 21:43:25,679] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE276094_M13_sorted [2026-05-21 21:43:25,681] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE293314_M18_sorted [2026-05-21 21:43:25,683] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE276094_M08_sorted [2026-05-21 21:43:25,684] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE293314_M26_sorted [2026-05-21 21:43:25,685] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE276094_M05_sorted [2026-05-21 21:43:25,687] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE293314_M24_sorted [2026-05-21 21:43:25,689] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE276094_M16_sorted [2026-05-21 21:43:25,690] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G256GSE293314_M17_sorted [2026-05-21 21:43:25,690] multiqc.modules.featureCounts.feature_counts [INFO ] Found 28 reports [2026-05-21 21:43:25,742] multiqc [DEBUG ] No samples found: fgbio [2026-05-21 21:43:25,826] multiqc [DEBUG ] No samples found: dragen [2026-05-21 21:43:25,840] multiqc [DEBUG ] No samples found: dedup [2026-05-21 21:43:25,856] multiqc [DEBUG ] No samples found: damageprofiler [2026-05-21 21:43:26,029] multiqc [DEBUG ] No samples found: biobambam2 [2026-05-21 21:43:26,047] multiqc [DEBUG ] No samples found: jcvi [2026-05-21 21:43:26,052] multiqc [DEBUG ] No samples found: mtnucratio [2026-05-21 21:43:27,170] multiqc.modules.picard.picard [INFO ] Found 28 InsertSizeMetrics reports [2026-05-21 21:43:27,222] multiqc.modules.picard.picard [INFO ] Found 28 MarkDuplicates reports [2026-05-21 21:43:27,284] multiqc.modules.picard.picard [INFO ] Found 28 RnaSeqMetrics reports [2026-05-21 21:43:27,303] multiqc [DEBUG ] No samples found: vep [2026-05-21 21:43:27,336] multiqc [DEBUG ] No samples found: sentieon [2026-05-21 21:43:27,359] multiqc [DEBUG ] No samples found: prokka [2026-05-21 21:43:27,382] multiqc [DEBUG ] No samples found: qc3C [2026-05-21 21:43:27,401] multiqc [DEBUG ] No samples found: nanostat [2026-05-21 21:43:27,409] multiqc [DEBUG ] No samples found: samblaster [2026-05-21 21:43:27,540] multiqc.modules.samtools.samtools [INFO ] Found 84 flagstat reports [2026-05-21 21:43:27,562] multiqc [DEBUG ] No samples found: sexdeterrmine [2026-05-21 21:43:27,572] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2026-05-21 21:43:27,582] multiqc [DEBUG ] No samples found: bamtools [2026-05-21 21:43:27,587] multiqc [DEBUG ] No samples found: jellyfish [2026-05-21 21:43:27,597] multiqc [DEBUG ] No samples found: vcftools [2026-05-21 21:43:27,616] multiqc [DEBUG ] No samples found: longranger [2026-05-21 21:43:27,632] multiqc [DEBUG ] No samples found: stacks [2026-05-21 21:43:27,650] multiqc [DEBUG ] No samples found: varscan2 [2026-05-21 21:43:27,667] multiqc [DEBUG ] No samples found: snippy [2026-05-21 21:43:27,714] multiqc [DEBUG ] No samples found: bbmap [2026-05-21 21:43:27,740] multiqc [DEBUG ] No samples found: bismark [2026-05-21 21:43:27,773] multiqc [DEBUG ] No samples found: biscuit [2026-05-21 21:43:27,794] multiqc [DEBUG ] No samples found: hicexplorer [2026-05-21 21:43:27,813] multiqc [DEBUG ] No samples found: hicup [2026-05-21 21:43:27,831] multiqc [DEBUG ] No samples found: hicpro [2026-05-21 21:43:27,841] multiqc [DEBUG ] No samples found: salmon [2026-05-21 21:43:27,858] multiqc [DEBUG ] No samples found: kallisto [2026-05-21 21:43:27,878] multiqc [DEBUG ] No samples found: slamdunk [2026-05-21 21:43:30,825] multiqc.modules.star.star [INFO ] Found 28 reports and 28 gene count files [2026-05-21 21:43:30,849] multiqc [DEBUG ] No samples found: hisat2 [2026-05-21 21:43:30,868] multiqc [DEBUG ] No samples found: tophat [2026-05-21 21:43:30,894] multiqc [DEBUG ] No samples found: bowtie2 [2026-05-21 21:43:30,920] multiqc [DEBUG ] No samples found: bowtie1 [2026-05-21 21:43:30,943] multiqc [DEBUG ] No samples found: snpsplit [2026-05-21 21:43:30,984] multiqc [DEBUG ] No samples found: odgi [2026-05-21 21:43:31,013] multiqc [DEBUG ] No samples found: pangolin [2026-05-21 21:43:31,023] multiqc [DEBUG ] No samples found: kat [2026-05-21 21:43:31,031] multiqc [DEBUG ] No samples found: leehom [2026-05-21 21:43:31,051] multiqc [DEBUG ] No samples found: adapterRemoval [2026-05-21 21:43:31,061] multiqc [DEBUG ] No samples found: clipandmerge [2026-05-21 21:43:31,094] multiqc [DEBUG ] No samples found: cutadapt [2026-05-21 21:43:31,101] multiqc [DEBUG ] No samples found: flexbar [2026-05-21 21:43:31,129] multiqc [DEBUG ] No samples found: kaiju [2026-05-21 21:43:31,151] multiqc [DEBUG ] No samples found: kraken [2026-05-21 21:43:31,169] multiqc [DEBUG ] No samples found: malt [2026-05-21 21:43:31,195] multiqc [DEBUG ] No samples found: trimmomatic [2026-05-21 21:43:31,216] multiqc [DEBUG ] No samples found: sickle [2026-05-21 21:43:31,245] multiqc [DEBUG ] No samples found: skewer [2026-05-21 21:43:31,251] multiqc [DEBUG ] No samples found: sortmerna [2026-05-21 21:43:31,257] multiqc [DEBUG ] No samples found: biobloomtools [2026-05-21 21:43:31,277] multiqc [DEBUG ] No samples found: fastq_screen [2026-05-21 21:43:31,305] multiqc [DEBUG ] No samples found: afterqc [2026-05-21 21:43:31,347] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,366] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,390] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,413] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,435] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,457] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,472] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,494] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,524] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,543] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,574] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,592] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,624] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,649] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,668] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,692] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,721] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,738] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,763] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,784] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,804] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,824] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,836] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,853] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,874] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,884] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,909] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,932] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-05-21 21:43:31,934] multiqc.modules.fastp.fastp [INFO ] Found 28 reports [2026-05-21 21:43:39,280] multiqc.modules.fastqc.fastqc [INFO ] Found 56 reports [2026-05-21 21:43:39,281] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2026-05-21 21:43:42,571] multiqc [DEBUG ] No samples found: pychopper [2026-05-21 21:43:42,593] multiqc [DEBUG ] No samples found: pycoqc [2026-05-21 21:43:42,608] multiqc [DEBUG ] No samples found: minionqc [2026-05-21 21:43:42,630] multiqc [DEBUG ] No samples found: multivcfanalyzer [2026-05-21 21:43:42,647] multiqc [DEBUG ] No samples found: clusterflow [2026-05-21 21:43:42,661] multiqc [DEBUG ] No samples found: bcl2fastq [2026-05-21 21:43:42,674] multiqc [DEBUG ] No samples found: bclconvert [2026-05-21 21:43:42,693] multiqc [DEBUG ] No samples found: interop [2026-05-21 21:43:42,719] multiqc [DEBUG ] No samples found: ivar [2026-05-21 21:43:42,745] multiqc [DEBUG ] No samples found: flash [2026-05-21 21:43:42,762] multiqc [DEBUG ] No samples found: seqyclean [2026-05-21 21:43:42,772] multiqc [DEBUG ] No samples found: optitype [2026-05-21 21:43:42,914] multiqc [INFO ] Compressing plot data [2026-05-21 21:43:45,777] multiqc [INFO ] Report : multiqc_report.html [2026-05-21 21:43:45,778] multiqc [INFO ] Data : multiqc_data [2026-05-21 21:43:45,778] multiqc [DEBUG ] Moving data file from '/scratch/tmpbvge1qfb/multiqc_data' to '/projectnb/wax-dk/max/G256_AML12_cells_Various_Studies/Scripts/99_final_summary/G256_AML12_cells_Various_Studies_multiqc_report/multiqc_data' [2026-05-21 21:43:46,427] multiqc [INFO ] MultiQC complete [2026-05-21 21:43:46,428] multiqc [WARNING] 1 flat-image plot used in the report due to large sample numbers