[2026-03-13 17:38:43,418] multiqc [DEBUG ] This is MultiQC v1.11 [2026-03-13 17:38:43,418] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2026-03-13 17:38:43,419] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2026-03-13 17:38:43,419] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2026-03-13 17:38:43,421] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/G253_RNASEQ_DevinKenney/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2026-03-13 17:38:43,421] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2026-03-13 17:38:43,421] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2026-03-13 17:38:43,421] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G253_RNASEQ_DevinKenney/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G253_RNASEQ_DevinKenney/SAMPLES /projectnb2/wax-dk/max/G253_RNASEQ_DevinKenney/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G253_RNASEQ_DevinKenney/Scripts/06_CollectMetrics/ [2026-03-13 17:38:43,986] multiqc [WARNING] MultiQC Version v1.33 now available! [2026-03-13 17:38:43,986] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G253_RNASEQ_DevinKenney/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G253_RNASEQ_DevinKenney/SAMPLES /projectnb2/wax-dk/max/G253_RNASEQ_DevinKenney/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G253_RNASEQ_DevinKenney/Scripts/06_CollectMetrics/ [2026-03-13 17:38:43,986] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G253_RNASEQ_DevinKenney/Scripts/99_final_summary/G253_RNASEQ_DevinKenney_Run1_multiqc_report [2026-03-13 17:38:43,986] multiqc [DEBUG ] Template : default [2026-03-13 17:38:43,986] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2026-03-13 17:38:43,987] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2026-03-13 17:38:43,988] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpcrxhpdpy [2026-03-13 17:38:44,502] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G253_RNASEQ_DevinKenney/SAMPLES [2026-03-13 17:38:44,502] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G253_RNASEQ_DevinKenney/Scripts/03_FASTQC [2026-03-13 17:38:44,503] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G253_RNASEQ_DevinKenney/Scripts/06_CollectMetrics [2026-03-13 17:38:44,866] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 42_R2_001.fastq.gz [2026-03-13 17:38:44,866] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 42_R1_001.fastq.gz [2026-03-13 17:38:45,044] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-03-13 17:38:45,049] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-03-13 17:38:45,049] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-03-13 17:38:45,049] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-03-13 17:38:45,055] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-03-13 17:38:45,055] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-03-13 17:38:45,055] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-03-13 17:38:45,055] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-03-13 17:38:45,055] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-03-13 17:38:45,055] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-03-13 17:38:45,055] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-03-13 17:38:45,055] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-03-13 17:38:45,055] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-03-13 17:38:45,056] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M42_SJ.out.tab [2026-03-13 17:38:47,968] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M42_marked_dup_metrics.txt [2026-03-13 17:38:47,971] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M42_marked_dup_metrics.txt [2026-03-13 17:38:47,971] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M42_marked_dup_metrics.txt [2026-03-13 17:38:47,972] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M42_marked_dup_metrics.txt [2026-03-13 17:38:47,976] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M42_marked_dup_metrics.txt [2026-03-13 17:38:47,996] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M42_hist.pdf [2026-03-13 17:38:48,020] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M42_metrics [2026-03-13 17:38:48,024] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M42_metrics [2026-03-13 17:38:48,024] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M42_metrics [2026-03-13 17:38:48,024] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M42_metrics [2026-03-13 17:38:48,029] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M42_metrics [2026-03-13 17:38:48,149] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:48,152] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:48,152] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:48,152] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:48,157] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:48,157] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:48,157] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:48,157] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:48,157] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:48,157] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:48,157] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:48,157] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:48,175] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:49,138] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:49,142] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:49,155] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:49,155] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:49,161] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:49,161] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:49,161] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:49,161] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:49,161] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:49,161] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:49,161] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:49,161] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:49,181] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M42_featureCounts.out [2026-03-13 17:38:50,101] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M42_metrics [2026-03-13 17:38:50,105] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M42_metrics [2026-03-13 17:38:50,109] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M42_metrics [2026-03-13 17:38:50,157] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 1-46740-2_S1_L001_R2_001.fastq.gz [2026-03-13 17:38:50,157] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 1-46740-2_S1_L001_R1_001.fastq.gz [2026-03-13 17:38:50,186] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M09_SJ.out.tab [2026-03-13 17:38:50,189] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M09_SJ.out.tab [2026-03-13 17:38:50,190] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M09_SJ.out.tab [2026-03-13 17:38:50,190] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M09_SJ.out.tab [2026-03-13 17:38:50,195] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M09_SJ.out.tab [2026-03-13 17:38:50,195] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M09_SJ.out.tab [2026-03-13 17:38:50,196] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M09_SJ.out.tab [2026-03-13 17:38:50,196] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M09_SJ.out.tab [2026-03-13 17:38:50,196] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M09_SJ.out.tab [2026-03-13 17:38:50,196] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M09_SJ.out.tab [2026-03-13 17:38:50,196] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M09_SJ.out.tab [2026-03-13 17:38:50,196] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M09_SJ.out.tab [2026-03-13 17:38:50,196] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M09_SJ.out.tab [2026-03-13 17:38:50,196] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M09_SJ.out.tab [2026-03-13 17:38:53,279] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:53,283] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:53,283] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:53,284] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:53,290] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:53,290] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:53,290] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:53,290] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:53,290] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:53,290] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:53,290] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:53,290] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:53,309] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:54,262] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:54,267] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:54,280] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:54,280] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:54,288] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:54,288] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:54,288] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:54,288] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:54,288] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:54,289] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:54,289] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:54,289] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:54,312] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M09_featureCounts.out [2026-03-13 17:38:55,236] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 40_R2_001.fastq.gz [2026-03-13 17:38:55,236] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 40_R1_001.fastq.gz [2026-03-13 17:38:55,310] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-03-13 17:38:55,314] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-03-13 17:38:55,314] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-03-13 17:38:55,314] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-03-13 17:38:55,320] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-03-13 17:38:55,321] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-03-13 17:38:55,321] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-03-13 17:38:55,321] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-03-13 17:38:55,321] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-03-13 17:38:55,321] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-03-13 17:38:55,321] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-03-13 17:38:55,321] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-03-13 17:38:55,321] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-03-13 17:38:55,321] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M40_SJ.out.tab [2026-03-13 17:38:58,056] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M40_marked_dup_metrics.txt [2026-03-13 17:38:58,059] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M40_marked_dup_metrics.txt [2026-03-13 17:38:58,059] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M40_marked_dup_metrics.txt [2026-03-13 17:38:58,059] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M40_marked_dup_metrics.txt [2026-03-13 17:38:58,064] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M40_marked_dup_metrics.txt [2026-03-13 17:38:58,097] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M40_metrics [2026-03-13 17:38:58,099] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M40_metrics [2026-03-13 17:38:58,099] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M40_metrics [2026-03-13 17:38:58,100] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M40_metrics [2026-03-13 17:38:58,104] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M40_metrics [2026-03-13 17:38:58,195] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M40_hist.pdf [2026-03-13 17:38:58,235] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:58,238] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:58,238] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:58,238] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:58,243] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:58,243] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:58,243] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:58,244] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:58,244] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:58,244] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:58,244] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:58,244] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:58,261] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:59,226] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:59,229] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:59,229] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:59,229] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:59,235] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:59,235] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:59,235] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:59,235] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:59,235] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:59,235] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:59,235] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:59,235] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:38:59,252] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M40_featureCounts.out [2026-03-13 17:39:00,149] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M40_metrics [2026-03-13 17:39:00,151] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M40_metrics [2026-03-13 17:39:00,155] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M40_metrics [2026-03-13 17:39:00,196] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 9-776F_R2_001.fastq.gz [2026-03-13 17:39:00,196] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 9-776F_R1_001.fastq.gz [2026-03-13 17:39:00,321] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M07_SJ.out.tab [2026-03-13 17:39:00,324] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M07_SJ.out.tab [2026-03-13 17:39:00,325] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M07_SJ.out.tab [2026-03-13 17:39:00,325] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M07_SJ.out.tab [2026-03-13 17:39:00,330] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M07_SJ.out.tab [2026-03-13 17:39:00,330] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M07_SJ.out.tab [2026-03-13 17:39:00,330] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M07_SJ.out.tab [2026-03-13 17:39:00,330] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M07_SJ.out.tab [2026-03-13 17:39:00,330] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M07_SJ.out.tab [2026-03-13 17:39:00,330] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M07_SJ.out.tab [2026-03-13 17:39:00,330] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M07_SJ.out.tab [2026-03-13 17:39:00,330] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M07_SJ.out.tab [2026-03-13 17:39:00,331] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M07_SJ.out.tab [2026-03-13 17:39:00,331] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M07_SJ.out.tab [2026-03-13 17:39:03,365] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:03,368] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:03,369] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:03,369] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:03,373] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:03,373] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:03,373] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:03,373] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:03,373] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:03,373] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:03,373] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:03,374] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:03,392] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:04,363] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:04,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:04,367] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:04,367] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:04,372] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:04,372] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:04,372] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:04,372] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:04,372] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:04,372] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:04,373] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:04,373] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:04,391] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M07_featureCounts.out [2026-03-13 17:39:05,322] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 53_R1_001.fastq.gz [2026-03-13 17:39:05,323] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 53_R2_001.fastq.gz [2026-03-13 17:39:05,457] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-03-13 17:39:05,460] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-03-13 17:39:05,461] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-03-13 17:39:05,461] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-03-13 17:39:05,465] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-03-13 17:39:05,466] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-03-13 17:39:05,466] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-03-13 17:39:05,466] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-03-13 17:39:05,466] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-03-13 17:39:05,466] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-03-13 17:39:05,466] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-03-13 17:39:05,466] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-03-13 17:39:05,466] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-03-13 17:39:05,466] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M53_SJ.out.tab [2026-03-13 17:39:08,170] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M53_marked_dup_metrics.txt [2026-03-13 17:39:08,172] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M53_marked_dup_metrics.txt [2026-03-13 17:39:08,172] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M53_marked_dup_metrics.txt [2026-03-13 17:39:08,172] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M53_marked_dup_metrics.txt [2026-03-13 17:39:08,176] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M53_marked_dup_metrics.txt [2026-03-13 17:39:08,191] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M53_hist.pdf [2026-03-13 17:39:08,218] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M53_metrics [2026-03-13 17:39:08,221] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M53_metrics [2026-03-13 17:39:08,222] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M53_metrics [2026-03-13 17:39:08,222] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M53_metrics [2026-03-13 17:39:08,226] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M53_metrics [2026-03-13 17:39:08,316] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:08,319] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:08,319] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:08,319] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:08,324] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:08,324] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:08,324] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:08,324] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:08,324] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:08,324] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:08,324] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:08,325] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:08,342] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:09,286] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:09,290] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:09,291] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:09,291] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:09,297] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:09,297] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:09,298] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:09,298] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:09,298] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:09,298] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:09,298] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:09,298] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:09,317] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M53_featureCounts.out [2026-03-13 17:39:10,270] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M53_metrics [2026-03-13 17:39:10,273] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M53_metrics [2026-03-13 17:39:10,278] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M53_metrics [2026-03-13 17:39:10,323] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 51_R1_001.fastq.gz [2026-03-13 17:39:10,324] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 51_R2_001.fastq.gz [2026-03-13 17:39:10,507] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-03-13 17:39:10,510] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-03-13 17:39:10,510] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-03-13 17:39:10,510] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-03-13 17:39:10,515] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-03-13 17:39:10,515] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-03-13 17:39:10,515] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-03-13 17:39:10,515] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-03-13 17:39:10,515] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-03-13 17:39:10,515] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-03-13 17:39:10,515] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-03-13 17:39:10,515] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-03-13 17:39:10,515] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-03-13 17:39:10,515] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M51_SJ.out.tab [2026-03-13 17:39:13,290] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M51_marked_dup_metrics.txt [2026-03-13 17:39:13,295] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M51_marked_dup_metrics.txt [2026-03-13 17:39:13,296] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M51_marked_dup_metrics.txt [2026-03-13 17:39:13,296] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M51_marked_dup_metrics.txt [2026-03-13 17:39:13,301] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M51_marked_dup_metrics.txt [2026-03-13 17:39:13,318] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M51_hist.pdf [2026-03-13 17:39:13,350] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M51_metrics [2026-03-13 17:39:13,354] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M51_metrics [2026-03-13 17:39:13,355] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M51_metrics [2026-03-13 17:39:13,355] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M51_metrics [2026-03-13 17:39:13,362] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M51_metrics [2026-03-13 17:39:13,504] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:13,509] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:13,509] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:13,509] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:13,515] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:13,515] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:13,515] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:13,515] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:13,515] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:13,515] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:13,515] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:13,515] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:13,534] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:14,524] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:14,528] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:14,529] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:14,529] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:14,536] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:14,536] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:14,536] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:14,536] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:14,536] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:14,536] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:14,536] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:14,536] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:14,555] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M51_featureCounts.out [2026-03-13 17:39:15,452] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M51_metrics [2026-03-13 17:39:15,456] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M51_metrics [2026-03-13 17:39:15,472] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M51_metrics [2026-03-13 17:39:15,521] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8-156_R1_001.fastq.gz [2026-03-13 17:39:15,521] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8-156_R2_001.fastq.gz [2026-03-13 17:39:15,587] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M04_SJ.out.tab [2026-03-13 17:39:15,591] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M04_SJ.out.tab [2026-03-13 17:39:15,592] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M04_SJ.out.tab [2026-03-13 17:39:15,592] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M04_SJ.out.tab [2026-03-13 17:39:15,600] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M04_SJ.out.tab [2026-03-13 17:39:15,600] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M04_SJ.out.tab [2026-03-13 17:39:15,600] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M04_SJ.out.tab [2026-03-13 17:39:15,600] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M04_SJ.out.tab [2026-03-13 17:39:15,600] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M04_SJ.out.tab [2026-03-13 17:39:15,601] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M04_SJ.out.tab [2026-03-13 17:39:15,601] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M04_SJ.out.tab [2026-03-13 17:39:15,601] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M04_SJ.out.tab [2026-03-13 17:39:15,601] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M04_SJ.out.tab [2026-03-13 17:39:15,601] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M04_SJ.out.tab [2026-03-13 17:39:18,783] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:18,787] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:18,788] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:18,788] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:18,794] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:18,794] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:18,794] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:18,794] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:18,794] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:18,794] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:18,794] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:18,795] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:18,815] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:19,776] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:19,780] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:19,780] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:19,781] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:19,787] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:19,787] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:19,787] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:19,787] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:19,787] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:19,788] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:19,788] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:19,788] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:19,809] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M04_featureCounts.out [2026-03-13 17:39:20,708] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 7-144_R2_001.fastq.gz [2026-03-13 17:39:20,708] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 7-144_R1_001.fastq.gz [2026-03-13 17:39:20,871] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M02_SJ.out.tab [2026-03-13 17:39:20,876] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M02_SJ.out.tab [2026-03-13 17:39:20,877] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M02_SJ.out.tab [2026-03-13 17:39:20,877] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M02_SJ.out.tab [2026-03-13 17:39:20,883] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M02_SJ.out.tab [2026-03-13 17:39:20,883] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M02_SJ.out.tab [2026-03-13 17:39:20,883] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M02_SJ.out.tab [2026-03-13 17:39:20,883] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M02_SJ.out.tab [2026-03-13 17:39:20,883] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M02_SJ.out.tab [2026-03-13 17:39:20,883] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M02_SJ.out.tab [2026-03-13 17:39:20,883] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M02_SJ.out.tab [2026-03-13 17:39:20,883] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M02_SJ.out.tab [2026-03-13 17:39:20,883] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M02_SJ.out.tab [2026-03-13 17:39:20,883] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M02_SJ.out.tab [2026-03-13 17:39:23,931] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:23,936] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:23,936] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:23,936] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:23,941] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:23,942] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:23,942] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:23,942] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:23,942] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:23,942] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:23,942] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:23,942] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:23,961] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:24,899] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:24,904] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:24,904] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:24,904] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:24,910] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:24,910] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:24,910] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:24,910] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:24,910] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:24,910] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:24,910] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:24,910] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:24,930] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M02_featureCounts.out [2026-03-13 17:39:25,845] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 13-7281_R1_001.fastq.gz [2026-03-13 17:39:25,846] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 13-7281_R2_001.fastq.gz [2026-03-13 17:39:26,011] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M15_SJ.out.tab [2026-03-13 17:39:26,015] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M15_SJ.out.tab [2026-03-13 17:39:26,016] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M15_SJ.out.tab [2026-03-13 17:39:26,016] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M15_SJ.out.tab [2026-03-13 17:39:26,021] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M15_SJ.out.tab [2026-03-13 17:39:26,021] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M15_SJ.out.tab [2026-03-13 17:39:26,021] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M15_SJ.out.tab [2026-03-13 17:39:26,021] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M15_SJ.out.tab [2026-03-13 17:39:26,021] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M15_SJ.out.tab [2026-03-13 17:39:26,021] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M15_SJ.out.tab [2026-03-13 17:39:26,021] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M15_SJ.out.tab [2026-03-13 17:39:26,021] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M15_SJ.out.tab [2026-03-13 17:39:26,021] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M15_SJ.out.tab [2026-03-13 17:39:26,022] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M15_SJ.out.tab [2026-03-13 17:39:28,939] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:28,943] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:28,944] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:28,944] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:28,949] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:28,949] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:28,949] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:28,949] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:28,950] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:28,950] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:28,950] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:28,950] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:28,969] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:29,991] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:29,995] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:29,995] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:29,995] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:30,001] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:30,001] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:30,001] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:30,001] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:30,001] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:30,001] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:30,001] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:30,001] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:30,021] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M15_featureCounts.out [2026-03-13 17:39:30,962] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16-DAB7_R2_001.fastq.gz [2026-03-13 17:39:30,963] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16-DAB7_R1_001.fastq.gz [2026-03-13 17:39:31,051] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M13_SJ.out.tab [2026-03-13 17:39:31,056] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M13_SJ.out.tab [2026-03-13 17:39:31,057] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M13_SJ.out.tab [2026-03-13 17:39:31,057] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M13_SJ.out.tab [2026-03-13 17:39:31,063] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M13_SJ.out.tab [2026-03-13 17:39:31,063] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M13_SJ.out.tab [2026-03-13 17:39:31,063] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M13_SJ.out.tab [2026-03-13 17:39:31,063] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M13_SJ.out.tab [2026-03-13 17:39:31,063] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M13_SJ.out.tab [2026-03-13 17:39:31,063] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M13_SJ.out.tab [2026-03-13 17:39:31,064] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M13_SJ.out.tab [2026-03-13 17:39:31,064] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M13_SJ.out.tab [2026-03-13 17:39:31,064] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M13_SJ.out.tab [2026-03-13 17:39:31,064] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M13_SJ.out.tab [2026-03-13 17:39:34,083] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:34,087] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:34,087] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:34,087] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:34,094] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:34,094] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:34,094] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:34,094] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:34,094] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:34,094] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:34,094] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:34,094] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:34,114] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:35,038] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:35,041] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:35,041] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:35,041] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:35,046] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:35,046] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:35,046] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:35,046] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:35,046] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:35,046] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:35,046] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:35,046] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:35,065] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M13_featureCounts.out [2026-03-13 17:39:36,010] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 39_R1_001.fastq.gz [2026-03-13 17:39:36,010] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 39_R2_001.fastq.gz [2026-03-13 17:39:36,118] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-03-13 17:39:36,122] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-03-13 17:39:36,123] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-03-13 17:39:36,123] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-03-13 17:39:36,130] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-03-13 17:39:36,130] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-03-13 17:39:36,130] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-03-13 17:39:36,130] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-03-13 17:39:36,130] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-03-13 17:39:36,131] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-03-13 17:39:36,131] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-03-13 17:39:36,131] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-03-13 17:39:36,131] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-03-13 17:39:36,131] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M39_SJ.out.tab [2026-03-13 17:39:38,833] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M39_marked_dup_metrics.txt [2026-03-13 17:39:38,838] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M39_marked_dup_metrics.txt [2026-03-13 17:39:38,838] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M39_marked_dup_metrics.txt [2026-03-13 17:39:38,838] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M39_marked_dup_metrics.txt [2026-03-13 17:39:38,844] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M39_marked_dup_metrics.txt [2026-03-13 17:39:38,887] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M39_metrics [2026-03-13 17:39:38,891] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M39_metrics [2026-03-13 17:39:38,891] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M39_metrics [2026-03-13 17:39:38,892] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M39_metrics [2026-03-13 17:39:38,899] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M39_metrics [2026-03-13 17:39:38,980] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M39_hist.pdf [2026-03-13 17:39:39,028] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:39,032] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:39,033] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:39,033] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:39,040] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:39,040] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:39,040] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:39,040] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:39,040] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:39,040] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:39,040] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:39,040] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:39,059] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:39,980] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:39,984] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:39,985] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:39,985] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:39,991] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:39,991] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:39,991] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:39,991] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:39,991] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:39,991] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:39,991] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:39,991] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:40,012] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M39_featureCounts.out [2026-03-13 17:39:40,896] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M39_metrics [2026-03-13 17:39:40,899] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M39_metrics [2026-03-13 17:39:40,903] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M39_metrics [2026-03-13 17:39:40,953] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 37_R1_001.fastq.gz [2026-03-13 17:39:40,954] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 37_R2_001.fastq.gz [2026-03-13 17:39:41,084] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-03-13 17:39:41,088] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-03-13 17:39:41,088] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-03-13 17:39:41,089] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-03-13 17:39:41,094] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-03-13 17:39:41,094] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-03-13 17:39:41,094] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-03-13 17:39:41,094] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-03-13 17:39:41,094] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-03-13 17:39:41,094] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-03-13 17:39:41,094] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-03-13 17:39:41,094] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-03-13 17:39:41,094] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-03-13 17:39:41,094] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M37_SJ.out.tab [2026-03-13 17:39:44,096] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M37_marked_dup_metrics.txt [2026-03-13 17:39:44,100] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M37_marked_dup_metrics.txt [2026-03-13 17:39:44,100] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M37_marked_dup_metrics.txt [2026-03-13 17:39:44,100] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M37_marked_dup_metrics.txt [2026-03-13 17:39:44,105] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M37_marked_dup_metrics.txt [2026-03-13 17:39:44,147] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M37_metrics [2026-03-13 17:39:44,150] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M37_metrics [2026-03-13 17:39:44,151] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M37_metrics [2026-03-13 17:39:44,151] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M37_metrics [2026-03-13 17:39:44,157] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M37_metrics [2026-03-13 17:39:44,227] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M37_hist.pdf [2026-03-13 17:39:44,289] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:44,292] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:44,292] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:44,293] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:44,299] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:44,299] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:44,299] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:44,299] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:44,300] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:44,300] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:44,300] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:44,300] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:44,320] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:45,237] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:45,241] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:45,242] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:45,242] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:45,249] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:45,249] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:45,249] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:45,249] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:45,249] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:45,249] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:45,249] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:45,249] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:45,267] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M37_featureCounts.out [2026-03-13 17:39:46,168] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M37_metrics [2026-03-13 17:39:46,201] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M37_metrics [2026-03-13 17:39:46,209] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M37_metrics [2026-03-13 17:39:46,263] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3-46740-1_R2_001.fastq.gz [2026-03-13 17:39:46,264] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3-46740-1_R1_001.fastq.gz [2026-03-13 17:39:46,383] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M10_SJ.out.tab [2026-03-13 17:39:46,387] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M10_SJ.out.tab [2026-03-13 17:39:46,387] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M10_SJ.out.tab [2026-03-13 17:39:46,387] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M10_SJ.out.tab [2026-03-13 17:39:46,394] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M10_SJ.out.tab [2026-03-13 17:39:46,394] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M10_SJ.out.tab [2026-03-13 17:39:46,394] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M10_SJ.out.tab [2026-03-13 17:39:46,394] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M10_SJ.out.tab [2026-03-13 17:39:46,394] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M10_SJ.out.tab [2026-03-13 17:39:46,394] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M10_SJ.out.tab [2026-03-13 17:39:46,394] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M10_SJ.out.tab [2026-03-13 17:39:46,394] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M10_SJ.out.tab [2026-03-13 17:39:46,394] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M10_SJ.out.tab [2026-03-13 17:39:46,394] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M10_SJ.out.tab [2026-03-13 17:39:49,242] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:49,246] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:49,247] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:49,247] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:49,253] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:49,253] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:49,253] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:49,254] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:49,254] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:49,254] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:49,254] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:49,254] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:49,273] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:50,214] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:50,218] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:50,219] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:50,219] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:50,224] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:50,224] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:50,224] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:50,224] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:50,225] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:50,225] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:50,225] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:50,225] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:50,244] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M10_featureCounts.out [2026-03-13 17:39:51,198] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 48_R2_001.fastq.gz [2026-03-13 17:39:51,199] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 48_R1_001.fastq.gz [2026-03-13 17:39:51,380] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-03-13 17:39:51,383] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-03-13 17:39:51,384] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-03-13 17:39:51,384] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-03-13 17:39:51,390] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-03-13 17:39:51,391] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-03-13 17:39:51,391] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-03-13 17:39:51,391] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-03-13 17:39:51,391] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-03-13 17:39:51,391] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-03-13 17:39:51,391] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-03-13 17:39:51,391] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-03-13 17:39:51,391] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-03-13 17:39:51,391] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M48_SJ.out.tab [2026-03-13 17:39:54,058] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M48_marked_dup_metrics.txt [2026-03-13 17:39:54,063] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M48_marked_dup_metrics.txt [2026-03-13 17:39:54,063] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M48_marked_dup_metrics.txt [2026-03-13 17:39:54,063] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M48_marked_dup_metrics.txt [2026-03-13 17:39:54,070] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M48_marked_dup_metrics.txt [2026-03-13 17:39:54,107] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M48_metrics [2026-03-13 17:39:54,110] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M48_metrics [2026-03-13 17:39:54,111] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M48_metrics [2026-03-13 17:39:54,111] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M48_metrics [2026-03-13 17:39:54,117] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M48_metrics [2026-03-13 17:39:54,210] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M48_hist.pdf [2026-03-13 17:39:54,260] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:54,264] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:54,265] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:54,265] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:54,271] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:54,272] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:54,272] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:54,272] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:54,272] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:54,272] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:54,272] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:54,272] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:54,292] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:55,225] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:55,229] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:55,230] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:55,230] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:55,236] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:55,236] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:55,236] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:55,236] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:55,236] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:55,236] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:55,237] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:55,237] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:55,255] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M48_featureCounts.out [2026-03-13 17:39:56,140] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M48_metrics [2026-03-13 17:39:56,144] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M48_metrics [2026-03-13 17:39:56,149] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M48_metrics [2026-03-13 17:39:56,198] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 59_R2_001.fastq.gz [2026-03-13 17:39:56,199] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 59_R1_001.fastq.gz [2026-03-13 17:39:56,319] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-03-13 17:39:56,323] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-03-13 17:39:56,324] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-03-13 17:39:56,324] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-03-13 17:39:56,330] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-03-13 17:39:56,330] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-03-13 17:39:56,330] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-03-13 17:39:56,330] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-03-13 17:39:56,330] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-03-13 17:39:56,330] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-03-13 17:39:56,331] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-03-13 17:39:56,331] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-03-13 17:39:56,331] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-03-13 17:39:56,331] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M59_SJ.out.tab [2026-03-13 17:39:59,142] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M59_marked_dup_metrics.txt [2026-03-13 17:39:59,146] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M59_marked_dup_metrics.txt [2026-03-13 17:39:59,147] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M59_marked_dup_metrics.txt [2026-03-13 17:39:59,147] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M59_marked_dup_metrics.txt [2026-03-13 17:39:59,156] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M59_marked_dup_metrics.txt [2026-03-13 17:39:59,175] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M59_hist.pdf [2026-03-13 17:39:59,203] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M59_metrics [2026-03-13 17:39:59,207] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M59_metrics [2026-03-13 17:39:59,207] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M59_metrics [2026-03-13 17:39:59,207] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M59_metrics [2026-03-13 17:39:59,214] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M59_metrics [2026-03-13 17:39:59,329] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:39:59,333] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:39:59,333] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:39:59,334] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:39:59,340] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:39:59,341] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:39:59,341] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:39:59,341] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:39:59,341] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:39:59,341] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:39:59,341] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:39:59,341] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:39:59,360] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:40:00,333] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:40:00,338] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:40:00,338] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:40:00,338] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:40:00,343] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:40:00,343] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:40:00,344] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:40:00,344] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:40:00,344] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:40:00,344] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:40:00,344] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:40:00,344] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:40:00,363] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M59_featureCounts.out [2026-03-13 17:40:01,273] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M59_metrics [2026-03-13 17:40:01,276] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M59_metrics [2026-03-13 17:40:01,297] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M59_metrics [2026-03-13 17:40:01,341] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 32_R1_001.fastq.gz [2026-03-13 17:40:01,342] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 32_R2_001.fastq.gz [2026-03-13 17:40:01,388] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-03-13 17:40:01,391] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-03-13 17:40:01,392] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-03-13 17:40:01,392] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-03-13 17:40:01,397] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-03-13 17:40:01,397] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-03-13 17:40:01,397] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-03-13 17:40:01,398] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-03-13 17:40:01,398] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-03-13 17:40:01,398] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-03-13 17:40:01,398] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-03-13 17:40:01,398] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-03-13 17:40:01,398] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-03-13 17:40:01,398] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M32_SJ.out.tab [2026-03-13 17:40:04,295] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M32_marked_dup_metrics.txt [2026-03-13 17:40:04,299] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M32_marked_dup_metrics.txt [2026-03-13 17:40:04,299] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M32_marked_dup_metrics.txt [2026-03-13 17:40:04,299] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M32_marked_dup_metrics.txt [2026-03-13 17:40:04,305] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M32_marked_dup_metrics.txt [2026-03-13 17:40:04,323] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M32_hist.pdf [2026-03-13 17:40:04,338] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M32_metrics [2026-03-13 17:40:04,343] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M32_metrics [2026-03-13 17:40:04,343] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M32_metrics [2026-03-13 17:40:04,343] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M32_metrics [2026-03-13 17:40:04,350] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M32_metrics [2026-03-13 17:40:04,474] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:04,478] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:04,478] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:04,479] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:04,485] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:04,485] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:04,485] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:04,485] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:04,485] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:04,485] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:04,485] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:04,485] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:04,504] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:05,444] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:05,448] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:05,449] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:05,449] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:05,454] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:05,455] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:05,455] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:05,455] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:05,455] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:05,455] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:05,455] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:05,455] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:05,474] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M32_featureCounts.out [2026-03-13 17:40:06,391] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M32_metrics [2026-03-13 17:40:06,394] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M32_metrics [2026-03-13 17:40:06,416] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M32_metrics [2026-03-13 17:40:06,468] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 43_R1_001.fastq.gz [2026-03-13 17:40:06,470] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 43_R2_001.fastq.gz [2026-03-13 17:40:06,505] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-03-13 17:40:06,509] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-03-13 17:40:06,510] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-03-13 17:40:06,510] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-03-13 17:40:06,517] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-03-13 17:40:06,517] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-03-13 17:40:06,517] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-03-13 17:40:06,517] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-03-13 17:40:06,517] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-03-13 17:40:06,517] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-03-13 17:40:06,517] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-03-13 17:40:06,517] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-03-13 17:40:06,517] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-03-13 17:40:06,517] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M43_SJ.out.tab [2026-03-13 17:40:09,257] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M43_marked_dup_metrics.txt [2026-03-13 17:40:09,260] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M43_marked_dup_metrics.txt [2026-03-13 17:40:09,260] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M43_marked_dup_metrics.txt [2026-03-13 17:40:09,260] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M43_marked_dup_metrics.txt [2026-03-13 17:40:09,265] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M43_marked_dup_metrics.txt [2026-03-13 17:40:09,292] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M43_metrics [2026-03-13 17:40:09,294] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M43_metrics [2026-03-13 17:40:09,295] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M43_metrics [2026-03-13 17:40:09,295] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M43_metrics [2026-03-13 17:40:09,300] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M43_metrics [2026-03-13 17:40:09,387] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M43_hist.pdf [2026-03-13 17:40:09,438] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:09,442] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:09,443] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:09,443] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:09,449] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:09,449] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:09,450] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:09,450] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:09,450] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:09,450] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:09,450] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:09,450] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:09,470] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:10,425] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:10,429] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:10,430] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:10,430] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:10,437] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:10,437] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:10,437] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:10,437] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:10,437] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:10,437] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:10,437] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:10,437] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:10,458] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M43_featureCounts.out [2026-03-13 17:40:11,364] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M43_metrics [2026-03-13 17:40:11,367] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M43_metrics [2026-03-13 17:40:11,373] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M43_metrics [2026-03-13 17:40:11,424] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 56_R2_001.fastq.gz [2026-03-13 17:40:11,425] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 56_R1_001.fastq.gz [2026-03-13 17:40:11,519] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-03-13 17:40:11,523] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-03-13 17:40:11,524] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-03-13 17:40:11,524] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-03-13 17:40:11,530] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-03-13 17:40:11,530] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-03-13 17:40:11,531] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-03-13 17:40:11,531] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-03-13 17:40:11,531] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-03-13 17:40:11,531] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-03-13 17:40:11,531] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-03-13 17:40:11,531] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-03-13 17:40:11,531] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-03-13 17:40:11,531] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M56_SJ.out.tab [2026-03-13 17:40:14,376] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M56_marked_dup_metrics.txt [2026-03-13 17:40:14,380] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M56_marked_dup_metrics.txt [2026-03-13 17:40:14,380] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M56_marked_dup_metrics.txt [2026-03-13 17:40:14,380] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M56_marked_dup_metrics.txt [2026-03-13 17:40:14,387] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M56_marked_dup_metrics.txt [2026-03-13 17:40:14,404] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M56_hist.pdf [2026-03-13 17:40:14,427] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M56_metrics [2026-03-13 17:40:14,429] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M56_metrics [2026-03-13 17:40:14,430] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M56_metrics [2026-03-13 17:40:14,430] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M56_metrics [2026-03-13 17:40:14,436] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M56_metrics [2026-03-13 17:40:14,584] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:14,588] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:14,589] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:14,589] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:14,594] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:14,594] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:14,594] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:14,594] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:14,594] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:14,594] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:14,595] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:14,595] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:14,614] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:15,552] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:15,557] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:15,557] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:15,557] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:15,563] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:15,563] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:15,563] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:15,563] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:15,563] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:15,563] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:15,563] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:15,563] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:15,583] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M56_featureCounts.out [2026-03-13 17:40:16,480] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M56_metrics [2026-03-13 17:40:16,484] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M56_metrics [2026-03-13 17:40:16,499] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M56_metrics [2026-03-13 17:40:16,552] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 54_R2_001.fastq.gz [2026-03-13 17:40:16,553] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 54_R1_001.fastq.gz [2026-03-13 17:40:16,622] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-03-13 17:40:16,626] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-03-13 17:40:16,626] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-03-13 17:40:16,627] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-03-13 17:40:16,632] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-03-13 17:40:16,632] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-03-13 17:40:16,632] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-03-13 17:40:16,632] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-03-13 17:40:16,632] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-03-13 17:40:16,633] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-03-13 17:40:16,633] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-03-13 17:40:16,633] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-03-13 17:40:16,662] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M54_SJ.out.tab [2026-03-13 17:40:18,149] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M54_marked_dup_metrics.txt [2026-03-13 17:40:18,153] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M54_marked_dup_metrics.txt [2026-03-13 17:40:18,154] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M54_marked_dup_metrics.txt [2026-03-13 17:40:18,154] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M54_marked_dup_metrics.txt [2026-03-13 17:40:18,160] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M54_marked_dup_metrics.txt [2026-03-13 17:40:18,199] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M54_metrics [2026-03-13 17:40:18,203] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M54_metrics [2026-03-13 17:40:18,204] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M54_metrics [2026-03-13 17:40:18,204] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M54_metrics [2026-03-13 17:40:18,209] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M54_metrics [2026-03-13 17:40:18,246] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M54_hist.pdf [2026-03-13 17:40:18,279] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:18,283] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:18,284] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:18,284] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:18,290] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:18,290] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:18,290] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:18,290] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:18,291] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:18,291] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:18,291] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:18,291] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:18,309] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:19,240] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:19,243] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:19,244] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:19,244] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:19,251] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:19,251] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:19,251] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:19,251] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:19,251] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:19,251] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:19,251] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:19,251] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:19,273] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M54_featureCounts.out [2026-03-13 17:40:20,189] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M54_metrics [2026-03-13 17:40:20,193] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M54_metrics [2026-03-13 17:40:20,199] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M54_metrics [2026-03-13 17:40:20,257] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 11-7A4C_R2_001.fastq.gz [2026-03-13 17:40:20,257] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 11-7A4C_R1_001.fastq.gz [2026-03-13 17:40:20,401] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M05_SJ.out.tab [2026-03-13 17:40:20,405] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M05_SJ.out.tab [2026-03-13 17:40:20,405] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M05_SJ.out.tab [2026-03-13 17:40:20,406] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M05_SJ.out.tab [2026-03-13 17:40:20,412] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M05_SJ.out.tab [2026-03-13 17:40:20,412] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M05_SJ.out.tab [2026-03-13 17:40:20,412] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M05_SJ.out.tab [2026-03-13 17:40:20,412] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M05_SJ.out.tab [2026-03-13 17:40:20,412] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M05_SJ.out.tab [2026-03-13 17:40:20,412] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M05_SJ.out.tab [2026-03-13 17:40:20,413] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M05_SJ.out.tab [2026-03-13 17:40:20,413] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M05_SJ.out.tab [2026-03-13 17:40:20,413] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M05_SJ.out.tab [2026-03-13 17:40:20,413] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M05_SJ.out.tab [2026-03-13 17:40:23,324] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:23,328] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:23,328] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:23,328] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:23,333] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:23,333] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:23,333] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:23,333] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:23,333] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:23,333] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:23,334] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:23,334] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:23,351] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:24,298] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:24,302] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:24,302] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:24,302] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:24,308] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:24,308] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:24,308] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:24,308] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:24,309] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:24,309] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:24,309] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:24,309] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:24,329] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M05_featureCounts.out [2026-03-13 17:40:25,285] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 14-70C1_R1_001.fastq.gz [2026-03-13 17:40:25,286] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 14-70C1_R2_001.fastq.gz [2026-03-13 17:40:25,359] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M16_SJ.out.tab [2026-03-13 17:40:25,363] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M16_SJ.out.tab [2026-03-13 17:40:25,363] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M16_SJ.out.tab [2026-03-13 17:40:25,364] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M16_SJ.out.tab [2026-03-13 17:40:25,370] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M16_SJ.out.tab [2026-03-13 17:40:25,370] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M16_SJ.out.tab [2026-03-13 17:40:25,371] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M16_SJ.out.tab [2026-03-13 17:40:25,371] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M16_SJ.out.tab [2026-03-13 17:40:25,371] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M16_SJ.out.tab [2026-03-13 17:40:25,371] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M16_SJ.out.tab [2026-03-13 17:40:25,371] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M16_SJ.out.tab [2026-03-13 17:40:25,371] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M16_SJ.out.tab [2026-03-13 17:40:25,371] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M16_SJ.out.tab [2026-03-13 17:40:25,371] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M16_SJ.out.tab [2026-03-13 17:40:28,214] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:28,218] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:28,219] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:28,219] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:28,225] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:28,225] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:28,225] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:28,225] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:28,225] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:28,225] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:28,225] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:28,225] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:28,244] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:29,195] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:29,199] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:29,200] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:29,200] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:29,206] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:29,206] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:29,206] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:29,206] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:29,206] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:29,206] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:29,206] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:29,207] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:29,225] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M16_featureCounts.out [2026-03-13 17:40:30,175] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 62_R2_001.fastq.gz [2026-03-13 17:40:30,176] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 62_R1_001.fastq.gz [2026-03-13 17:40:30,341] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-03-13 17:40:30,345] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-03-13 17:40:30,346] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-03-13 17:40:30,346] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-03-13 17:40:30,351] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-03-13 17:40:30,351] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-03-13 17:40:30,351] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-03-13 17:40:30,351] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-03-13 17:40:30,351] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-03-13 17:40:30,351] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-03-13 17:40:30,352] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-03-13 17:40:30,352] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-03-13 17:40:30,352] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-03-13 17:40:30,352] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M62_SJ.out.tab [2026-03-13 17:40:33,147] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M62_marked_dup_metrics.txt [2026-03-13 17:40:33,151] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M62_marked_dup_metrics.txt [2026-03-13 17:40:33,152] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M62_marked_dup_metrics.txt [2026-03-13 17:40:33,152] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M62_marked_dup_metrics.txt [2026-03-13 17:40:33,158] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M62_marked_dup_metrics.txt [2026-03-13 17:40:33,175] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M62_hist.pdf [2026-03-13 17:40:33,199] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M62_metrics [2026-03-13 17:40:33,203] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M62_metrics [2026-03-13 17:40:33,203] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M62_metrics [2026-03-13 17:40:33,204] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M62_metrics [2026-03-13 17:40:33,210] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M62_metrics [2026-03-13 17:40:33,350] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:33,355] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:33,355] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:33,355] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:33,361] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:33,361] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:33,361] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:33,361] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:33,361] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:33,361] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:33,362] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:33,362] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:33,381] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:34,341] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:34,346] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:34,350] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:34,350] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:34,356] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:34,356] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:34,356] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:34,356] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:34,356] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:34,356] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:34,356] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:34,356] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:34,377] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M62_featureCounts.out [2026-03-13 17:40:35,294] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M62_metrics [2026-03-13 17:40:35,298] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M62_metrics [2026-03-13 17:40:35,303] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M62_metrics [2026-03-13 17:40:35,355] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 60_R1_001.fastq.gz [2026-03-13 17:40:35,356] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 60_R2_001.fastq.gz [2026-03-13 17:40:35,447] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-03-13 17:40:35,452] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-03-13 17:40:35,453] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-03-13 17:40:35,453] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-03-13 17:40:35,459] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-03-13 17:40:35,459] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-03-13 17:40:35,459] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-03-13 17:40:35,459] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-03-13 17:40:35,459] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-03-13 17:40:35,459] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-03-13 17:40:35,459] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-03-13 17:40:35,459] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-03-13 17:40:35,459] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-03-13 17:40:35,459] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M60_SJ.out.tab [2026-03-13 17:40:38,241] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M60_marked_dup_metrics.txt [2026-03-13 17:40:38,245] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M60_marked_dup_metrics.txt [2026-03-13 17:40:38,246] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M60_marked_dup_metrics.txt [2026-03-13 17:40:38,246] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M60_marked_dup_metrics.txt [2026-03-13 17:40:38,253] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M60_marked_dup_metrics.txt [2026-03-13 17:40:38,271] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M60_hist.pdf [2026-03-13 17:40:38,295] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M60_metrics [2026-03-13 17:40:38,299] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M60_metrics [2026-03-13 17:40:38,300] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M60_metrics [2026-03-13 17:40:38,300] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M60_metrics [2026-03-13 17:40:38,306] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M60_metrics [2026-03-13 17:40:38,461] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:38,465] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:38,466] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:38,466] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:38,472] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:38,472] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:38,472] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:38,472] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:38,472] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:38,472] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:38,472] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:38,472] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:38,490] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:39,422] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:39,426] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:39,434] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:39,434] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:39,442] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:39,442] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:39,442] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:39,442] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:39,442] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:39,442] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:39,442] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:39,442] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:39,464] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M60_featureCounts.out [2026-03-13 17:40:40,404] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M60_metrics [2026-03-13 17:40:40,406] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M60_metrics [2026-03-13 17:40:40,410] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M60_metrics [2026-03-13 17:40:40,457] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 38_R1_001.fastq.gz [2026-03-13 17:40:40,458] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 38_R2_001.fastq.gz [2026-03-13 17:40:40,599] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-03-13 17:40:40,601] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-03-13 17:40:40,602] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-03-13 17:40:40,602] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-03-13 17:40:40,607] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-03-13 17:40:40,607] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-03-13 17:40:40,607] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-03-13 17:40:40,607] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-03-13 17:40:40,607] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-03-13 17:40:40,607] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-03-13 17:40:40,607] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-03-13 17:40:40,607] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-03-13 17:40:40,607] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-03-13 17:40:40,607] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M38_SJ.out.tab [2026-03-13 17:40:43,199] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M38_marked_dup_metrics.txt [2026-03-13 17:40:43,203] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M38_marked_dup_metrics.txt [2026-03-13 17:40:43,204] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M38_marked_dup_metrics.txt [2026-03-13 17:40:43,204] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M38_marked_dup_metrics.txt [2026-03-13 17:40:43,210] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M38_marked_dup_metrics.txt [2026-03-13 17:40:43,226] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M38_hist.pdf [2026-03-13 17:40:43,250] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M38_metrics [2026-03-13 17:40:43,255] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M38_metrics [2026-03-13 17:40:43,255] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M38_metrics [2026-03-13 17:40:43,255] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M38_metrics [2026-03-13 17:40:43,262] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M38_metrics [2026-03-13 17:40:43,354] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:43,358] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:43,359] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:43,359] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:43,366] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:43,366] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:43,366] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:43,366] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:43,366] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:43,366] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:43,366] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:43,366] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:43,387] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:44,328] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:44,332] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:44,333] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:44,333] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:44,338] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:44,339] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:44,339] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:44,339] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:44,339] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:44,339] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:44,339] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:44,339] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:44,358] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M38_featureCounts.out [2026-03-13 17:40:45,273] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M38_metrics [2026-03-13 17:40:45,276] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M38_metrics [2026-03-13 17:40:45,283] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M38_metrics [2026-03-13 17:40:45,328] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4-158_R2_001.fastq.gz [2026-03-13 17:40:45,329] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4-158_R1_001.fastq.gz [2026-03-13 17:40:45,458] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M11_SJ.out.tab [2026-03-13 17:40:45,462] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M11_SJ.out.tab [2026-03-13 17:40:45,463] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M11_SJ.out.tab [2026-03-13 17:40:45,463] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M11_SJ.out.tab [2026-03-13 17:40:45,469] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M11_SJ.out.tab [2026-03-13 17:40:45,469] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M11_SJ.out.tab [2026-03-13 17:40:45,469] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M11_SJ.out.tab [2026-03-13 17:40:45,469] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M11_SJ.out.tab [2026-03-13 17:40:45,469] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M11_SJ.out.tab [2026-03-13 17:40:45,469] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M11_SJ.out.tab [2026-03-13 17:40:45,469] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M11_SJ.out.tab [2026-03-13 17:40:45,469] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M11_SJ.out.tab [2026-03-13 17:40:45,469] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M11_SJ.out.tab [2026-03-13 17:40:45,470] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M11_SJ.out.tab [2026-03-13 17:40:48,290] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:48,294] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:48,295] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:48,295] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:48,301] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:48,301] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:48,301] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:48,301] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:48,301] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:48,301] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:48,301] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:48,301] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:48,320] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:49,232] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:49,236] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:49,236] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:49,236] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:49,243] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:49,243] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:49,243] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:49,243] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:49,243] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:49,243] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:49,243] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:49,243] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:49,263] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M11_featureCounts.out [2026-03-13 17:40:50,191] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 49_R1_001.fastq.gz [2026-03-13 17:40:50,191] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 49_R2_001.fastq.gz [2026-03-13 17:40:50,330] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-03-13 17:40:50,334] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-03-13 17:40:50,342] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-03-13 17:40:50,342] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-03-13 17:40:50,350] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-03-13 17:40:50,350] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-03-13 17:40:50,350] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-03-13 17:40:50,350] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-03-13 17:40:50,350] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-03-13 17:40:50,350] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-03-13 17:40:50,350] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-03-13 17:40:50,351] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-03-13 17:40:50,351] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-03-13 17:40:50,351] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M49_SJ.out.tab [2026-03-13 17:40:53,007] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M49_marked_dup_metrics.txt [2026-03-13 17:40:53,011] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M49_marked_dup_metrics.txt [2026-03-13 17:40:53,011] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M49_marked_dup_metrics.txt [2026-03-13 17:40:53,011] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M49_marked_dup_metrics.txt [2026-03-13 17:40:53,017] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M49_marked_dup_metrics.txt [2026-03-13 17:40:53,036] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M49_hist.pdf [2026-03-13 17:40:53,051] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M49_metrics [2026-03-13 17:40:53,055] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M49_metrics [2026-03-13 17:40:53,055] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M49_metrics [2026-03-13 17:40:53,055] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M49_metrics [2026-03-13 17:40:53,061] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M49_metrics [2026-03-13 17:40:53,191] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:53,195] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:53,196] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:53,196] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:53,202] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:53,203] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:53,203] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:53,203] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:53,203] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:53,203] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:53,203] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:53,203] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:53,223] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:54,161] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:54,165] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:54,166] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:54,166] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:54,173] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:54,173] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:54,173] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:54,173] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:54,173] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:54,173] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:54,173] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:54,173] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:54,193] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M49_featureCounts.out [2026-03-13 17:40:55,110] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M49_metrics [2026-03-13 17:40:55,113] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M49_metrics [2026-03-13 17:40:55,117] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M49_metrics [2026-03-13 17:40:55,160] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 35_R2_001.fastq.gz [2026-03-13 17:40:55,161] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 35_R1_001.fastq.gz [2026-03-13 17:40:55,315] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-03-13 17:40:55,320] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-03-13 17:40:55,321] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-03-13 17:40:55,321] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-03-13 17:40:55,330] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-03-13 17:40:55,330] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-03-13 17:40:55,330] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-03-13 17:40:55,330] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-03-13 17:40:55,330] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-03-13 17:40:55,330] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-03-13 17:40:55,331] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-03-13 17:40:55,331] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-03-13 17:40:55,331] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-03-13 17:40:55,331] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M35_SJ.out.tab [2026-03-13 17:40:58,214] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M35_marked_dup_metrics.txt [2026-03-13 17:40:58,218] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M35_marked_dup_metrics.txt [2026-03-13 17:40:58,219] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M35_marked_dup_metrics.txt [2026-03-13 17:40:58,219] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M35_marked_dup_metrics.txt [2026-03-13 17:40:58,225] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M35_marked_dup_metrics.txt [2026-03-13 17:40:58,262] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M35_metrics [2026-03-13 17:40:58,266] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M35_metrics [2026-03-13 17:40:58,266] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M35_metrics [2026-03-13 17:40:58,266] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M35_metrics [2026-03-13 17:40:58,273] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M35_metrics [2026-03-13 17:40:58,357] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M35_hist.pdf [2026-03-13 17:40:58,406] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:58,411] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:58,411] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:58,411] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:58,418] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:58,419] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:58,419] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:58,419] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:58,419] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:58,419] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:58,419] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:58,419] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:58,439] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:59,381] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:59,385] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:59,386] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:59,386] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:59,391] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:59,391] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:59,391] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:59,391] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:59,391] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:59,392] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:59,392] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:59,392] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:40:59,411] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M35_featureCounts.out [2026-03-13 17:41:00,307] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M35_metrics [2026-03-13 17:41:00,311] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M35_metrics [2026-03-13 17:41:00,316] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M35_metrics [2026-03-13 17:41:00,365] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 33_R1_001.fastq.gz [2026-03-13 17:41:00,366] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 33_R2_001.fastq.gz [2026-03-13 17:41:00,418] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-03-13 17:41:00,422] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-03-13 17:41:00,423] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-03-13 17:41:00,423] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-03-13 17:41:00,430] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-03-13 17:41:00,430] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-03-13 17:41:00,430] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-03-13 17:41:00,430] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-03-13 17:41:00,430] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-03-13 17:41:00,430] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-03-13 17:41:00,430] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-03-13 17:41:00,430] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-03-13 17:41:00,431] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-03-13 17:41:00,431] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M33_SJ.out.tab [2026-03-13 17:41:03,312] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M33_marked_dup_metrics.txt [2026-03-13 17:41:03,315] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M33_marked_dup_metrics.txt [2026-03-13 17:41:03,325] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M33_marked_dup_metrics.txt [2026-03-13 17:41:03,325] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M33_marked_dup_metrics.txt [2026-03-13 17:41:03,330] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M33_marked_dup_metrics.txt [2026-03-13 17:41:03,348] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M33_hist.pdf [2026-03-13 17:41:03,365] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M33_metrics [2026-03-13 17:41:03,367] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M33_metrics [2026-03-13 17:41:03,368] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M33_metrics [2026-03-13 17:41:03,368] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M33_metrics [2026-03-13 17:41:03,373] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M33_metrics [2026-03-13 17:41:03,501] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:03,505] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:03,506] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:03,506] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:03,512] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:03,512] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:03,512] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:03,512] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:03,512] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:03,512] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:03,512] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:03,512] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:03,531] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:04,487] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:04,490] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:04,491] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:04,491] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:04,495] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:04,495] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:04,496] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:04,496] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:04,496] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:04,496] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:04,496] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:04,496] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:04,515] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M33_featureCounts.out [2026-03-13 17:41:05,392] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M33_metrics [2026-03-13 17:41:05,396] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M33_metrics [2026-03-13 17:41:05,401] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M33_metrics [2026-03-13 17:41:05,443] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 46_R1_001.fastq.gz [2026-03-13 17:41:05,444] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 46_R2_001.fastq.gz [2026-03-13 17:41:05,559] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-03-13 17:41:05,563] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-03-13 17:41:05,564] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-03-13 17:41:05,564] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-03-13 17:41:05,570] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-03-13 17:41:05,570] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-03-13 17:41:05,570] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-03-13 17:41:05,571] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-03-13 17:41:05,571] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-03-13 17:41:05,571] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-03-13 17:41:05,571] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-03-13 17:41:05,571] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-03-13 17:41:05,571] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-03-13 17:41:05,571] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M46_SJ.out.tab [2026-03-13 17:41:08,036] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M46_marked_dup_metrics.txt [2026-03-13 17:41:08,041] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M46_marked_dup_metrics.txt [2026-03-13 17:41:08,042] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M46_marked_dup_metrics.txt [2026-03-13 17:41:08,042] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M46_marked_dup_metrics.txt [2026-03-13 17:41:08,048] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M46_marked_dup_metrics.txt [2026-03-13 17:41:08,084] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M46_metrics [2026-03-13 17:41:08,088] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M46_metrics [2026-03-13 17:41:08,088] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M46_metrics [2026-03-13 17:41:08,089] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M46_metrics [2026-03-13 17:41:08,095] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M46_metrics [2026-03-13 17:41:08,192] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M46_hist.pdf [2026-03-13 17:41:08,219] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:08,223] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:08,223] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:08,224] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:08,230] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:08,230] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:08,230] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:08,230] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:08,230] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:08,230] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:08,230] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:08,230] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:08,250] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:09,179] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:09,184] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:09,184] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:09,184] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:09,190] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:09,190] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:09,190] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:09,190] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:09,190] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:09,190] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:09,190] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:09,190] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:09,210] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M46_featureCounts.out [2026-03-13 17:41:10,114] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M46_metrics [2026-03-13 17:41:10,116] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M46_metrics [2026-03-13 17:41:10,121] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M46_metrics [2026-03-13 17:41:10,167] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 44_R1_001.fastq.gz [2026-03-13 17:41:10,169] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 44_R2_001.fastq.gz [2026-03-13 17:41:10,230] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-03-13 17:41:10,234] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-03-13 17:41:10,234] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-03-13 17:41:10,234] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-03-13 17:41:10,239] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-03-13 17:41:10,239] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-03-13 17:41:10,239] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-03-13 17:41:10,239] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-03-13 17:41:10,239] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-03-13 17:41:10,239] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-03-13 17:41:10,239] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-03-13 17:41:10,239] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-03-13 17:41:10,239] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-03-13 17:41:10,239] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M44_SJ.out.tab [2026-03-13 17:41:12,904] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M44_marked_dup_metrics.txt [2026-03-13 17:41:12,909] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M44_marked_dup_metrics.txt [2026-03-13 17:41:12,910] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M44_marked_dup_metrics.txt [2026-03-13 17:41:12,910] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M44_marked_dup_metrics.txt [2026-03-13 17:41:12,918] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M44_marked_dup_metrics.txt [2026-03-13 17:41:12,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M44_hist.pdf [2026-03-13 17:41:12,952] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M44_metrics [2026-03-13 17:41:12,955] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M44_metrics [2026-03-13 17:41:12,955] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M44_metrics [2026-03-13 17:41:12,955] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M44_metrics [2026-03-13 17:41:12,960] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M44_metrics [2026-03-13 17:41:13,116] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:13,121] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:13,121] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:13,121] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:13,127] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:13,127] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:13,127] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:13,127] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:13,128] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:13,128] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:13,128] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:13,128] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:13,146] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:14,078] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:14,082] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:14,083] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:14,083] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:14,090] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:14,090] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:14,090] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:14,090] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:14,090] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:14,090] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:14,090] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:14,090] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:14,111] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M44_featureCounts.out [2026-03-13 17:41:14,986] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M44_metrics [2026-03-13 17:41:14,988] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M44_metrics [2026-03-13 17:41:14,992] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M44_metrics [2026-03-13 17:41:15,039] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 57_R2_001.fastq.gz [2026-03-13 17:41:15,040] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 57_R1_001.fastq.gz [2026-03-13 17:41:15,222] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-03-13 17:41:15,227] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-03-13 17:41:15,227] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-03-13 17:41:15,227] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-03-13 17:41:15,234] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-03-13 17:41:15,234] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-03-13 17:41:15,234] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-03-13 17:41:15,234] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-03-13 17:41:15,234] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-03-13 17:41:15,234] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-03-13 17:41:15,234] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-03-13 17:41:15,234] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-03-13 17:41:15,235] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-03-13 17:41:15,235] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M57_SJ.out.tab [2026-03-13 17:41:17,901] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M57_marked_dup_metrics.txt [2026-03-13 17:41:17,905] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M57_marked_dup_metrics.txt [2026-03-13 17:41:17,906] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M57_marked_dup_metrics.txt [2026-03-13 17:41:17,906] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M57_marked_dup_metrics.txt [2026-03-13 17:41:17,911] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M57_marked_dup_metrics.txt [2026-03-13 17:41:17,951] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M57_metrics [2026-03-13 17:41:17,954] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M57_metrics [2026-03-13 17:41:17,955] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M57_metrics [2026-03-13 17:41:17,955] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M57_metrics [2026-03-13 17:41:17,962] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M57_metrics [2026-03-13 17:41:18,058] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M57_hist.pdf [2026-03-13 17:41:18,111] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:18,115] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:18,116] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:18,116] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:18,123] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:18,124] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:18,124] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:18,124] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:18,124] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:18,124] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:18,124] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:18,124] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:18,147] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:19,079] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:19,083] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:19,083] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:19,084] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:19,090] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:19,090] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:19,090] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:19,090] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:19,090] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:19,090] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:19,090] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:19,090] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:19,110] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M57_featureCounts.out [2026-03-13 17:41:19,996] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M57_metrics [2026-03-13 17:41:20,000] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M57_metrics [2026-03-13 17:41:20,015] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M57_metrics [2026-03-13 17:41:20,062] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 55_R1_001.fastq.gz [2026-03-13 17:41:20,065] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 55_R2_001.fastq.gz [2026-03-13 17:41:20,215] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-03-13 17:41:20,219] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-03-13 17:41:20,219] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-03-13 17:41:20,220] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-03-13 17:41:20,226] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-03-13 17:41:20,226] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-03-13 17:41:20,226] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-03-13 17:41:20,226] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-03-13 17:41:20,226] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-03-13 17:41:20,226] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-03-13 17:41:20,226] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-03-13 17:41:20,226] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-03-13 17:41:20,226] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-03-13 17:41:20,226] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M55_SJ.out.tab [2026-03-13 17:41:22,757] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M55_marked_dup_metrics.txt [2026-03-13 17:41:22,762] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M55_marked_dup_metrics.txt [2026-03-13 17:41:22,762] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M55_marked_dup_metrics.txt [2026-03-13 17:41:22,762] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M55_marked_dup_metrics.txt [2026-03-13 17:41:22,768] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M55_marked_dup_metrics.txt [2026-03-13 17:41:22,798] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M55_metrics [2026-03-13 17:41:22,800] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M55_metrics [2026-03-13 17:41:22,801] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M55_metrics [2026-03-13 17:41:22,801] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M55_metrics [2026-03-13 17:41:22,806] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M55_metrics [2026-03-13 17:41:22,872] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M55_hist.pdf [2026-03-13 17:41:22,923] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:22,926] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:22,926] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:22,926] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:22,932] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:22,932] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:22,932] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:22,932] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:22,932] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:22,933] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:22,933] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:22,933] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:22,952] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:23,880] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:23,884] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:23,884] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:23,884] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:23,890] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:23,890] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:23,890] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:23,890] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:23,891] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:23,891] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:23,891] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:23,891] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:23,910] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M55_featureCounts.out [2026-03-13 17:41:24,794] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M55_metrics [2026-03-13 17:41:24,796] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M55_metrics [2026-03-13 17:41:24,801] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M55_metrics [2026-03-13 17:41:24,844] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 41_R2_001.fastq.gz [2026-03-13 17:41:24,845] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 41_R1_001.fastq.gz [2026-03-13 17:41:24,878] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-03-13 17:41:24,882] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-03-13 17:41:24,882] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-03-13 17:41:24,882] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-03-13 17:41:24,889] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-03-13 17:41:24,889] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-03-13 17:41:24,890] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-03-13 17:41:24,890] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-03-13 17:41:24,890] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-03-13 17:41:24,890] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-03-13 17:41:24,890] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-03-13 17:41:24,890] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-03-13 17:41:24,890] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-03-13 17:41:24,890] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M41_SJ.out.tab [2026-03-13 17:41:27,742] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M41_marked_dup_metrics.txt [2026-03-13 17:41:27,747] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M41_marked_dup_metrics.txt [2026-03-13 17:41:27,748] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M41_marked_dup_metrics.txt [2026-03-13 17:41:27,748] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M41_marked_dup_metrics.txt [2026-03-13 17:41:27,753] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M41_marked_dup_metrics.txt [2026-03-13 17:41:27,771] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M41_hist.pdf [2026-03-13 17:41:27,783] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M41_metrics [2026-03-13 17:41:27,786] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M41_metrics [2026-03-13 17:41:27,786] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M41_metrics [2026-03-13 17:41:27,786] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M41_metrics [2026-03-13 17:41:27,791] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M41_metrics [2026-03-13 17:41:27,927] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:27,931] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:27,931] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:27,931] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:27,937] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:27,937] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:27,937] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:27,937] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:27,937] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:27,937] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:27,937] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:27,937] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:27,957] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:28,888] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:28,893] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:28,893] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:28,893] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:28,901] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:28,901] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:28,901] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:28,901] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:28,901] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:28,901] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:28,901] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:28,901] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:28,921] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M41_featureCounts.out [2026-03-13 17:41:29,820] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M41_metrics [2026-03-13 17:41:29,824] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M41_metrics [2026-03-13 17:41:29,829] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M41_metrics [2026-03-13 17:41:29,878] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10-46CF_R1_001.fastq.gz [2026-03-13 17:41:29,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10-46CF_R2_001.fastq.gz [2026-03-13 17:41:29,931] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M08_SJ.out.tab [2026-03-13 17:41:29,935] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M08_SJ.out.tab [2026-03-13 17:41:29,935] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M08_SJ.out.tab [2026-03-13 17:41:29,936] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M08_SJ.out.tab [2026-03-13 17:41:29,942] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M08_SJ.out.tab [2026-03-13 17:41:29,942] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M08_SJ.out.tab [2026-03-13 17:41:29,942] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M08_SJ.out.tab [2026-03-13 17:41:29,942] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M08_SJ.out.tab [2026-03-13 17:41:29,942] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M08_SJ.out.tab [2026-03-13 17:41:29,943] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M08_SJ.out.tab [2026-03-13 17:41:29,943] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M08_SJ.out.tab [2026-03-13 17:41:29,943] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M08_SJ.out.tab [2026-03-13 17:41:29,943] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M08_SJ.out.tab [2026-03-13 17:41:29,943] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M08_SJ.out.tab [2026-03-13 17:41:32,782] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:32,786] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:32,800] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:32,800] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:32,808] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:32,808] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:32,808] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:32,808] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:32,809] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:32,809] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:32,809] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:32,809] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:32,833] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:33,760] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:33,764] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:33,765] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:33,765] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:33,773] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:33,773] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:33,773] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:33,773] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:33,773] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:33,773] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:33,773] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:33,773] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:33,796] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M08_featureCounts.out [2026-03-13 17:41:34,746] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 12-384D_R1_001.fastq.gz [2026-03-13 17:41:34,747] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 12-384D_R2_001.fastq.gz [2026-03-13 17:41:34,857] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M06_SJ.out.tab [2026-03-13 17:41:34,861] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M06_SJ.out.tab [2026-03-13 17:41:34,862] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M06_SJ.out.tab [2026-03-13 17:41:34,862] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M06_SJ.out.tab [2026-03-13 17:41:34,867] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M06_SJ.out.tab [2026-03-13 17:41:34,867] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M06_SJ.out.tab [2026-03-13 17:41:34,867] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M06_SJ.out.tab [2026-03-13 17:41:34,867] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M06_SJ.out.tab [2026-03-13 17:41:34,867] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M06_SJ.out.tab [2026-03-13 17:41:34,867] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M06_SJ.out.tab [2026-03-13 17:41:34,867] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M06_SJ.out.tab [2026-03-13 17:41:34,867] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M06_SJ.out.tab [2026-03-13 17:41:34,867] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M06_SJ.out.tab [2026-03-13 17:41:34,867] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M06_SJ.out.tab [2026-03-13 17:41:37,700] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:37,704] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:37,705] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:37,705] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:37,711] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:37,711] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:37,711] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:37,711] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:37,711] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:37,711] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:37,711] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:37,711] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:37,731] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:38,694] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:38,699] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:38,699] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:38,699] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:38,705] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:38,705] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:38,705] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:38,706] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:38,706] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:38,706] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:38,706] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:38,706] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:38,726] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M06_featureCounts.out [2026-03-13 17:41:39,682] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 52_R1_001.fastq.gz [2026-03-13 17:41:39,683] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 52_R2_001.fastq.gz [2026-03-13 17:41:39,789] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-03-13 17:41:39,793] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-03-13 17:41:39,794] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-03-13 17:41:39,794] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-03-13 17:41:39,800] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-03-13 17:41:39,800] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-03-13 17:41:39,800] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-03-13 17:41:39,800] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-03-13 17:41:39,800] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-03-13 17:41:39,800] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-03-13 17:41:39,800] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-03-13 17:41:39,800] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-03-13 17:41:39,800] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-03-13 17:41:39,800] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M52_SJ.out.tab [2026-03-13 17:41:42,374] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M52_marked_dup_metrics.txt [2026-03-13 17:41:42,377] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M52_marked_dup_metrics.txt [2026-03-13 17:41:42,377] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M52_marked_dup_metrics.txt [2026-03-13 17:41:42,377] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M52_marked_dup_metrics.txt [2026-03-13 17:41:42,381] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M52_marked_dup_metrics.txt [2026-03-13 17:41:42,428] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M52_metrics [2026-03-13 17:41:42,431] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M52_metrics [2026-03-13 17:41:42,431] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M52_metrics [2026-03-13 17:41:42,431] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M52_metrics [2026-03-13 17:41:42,437] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M52_metrics [2026-03-13 17:41:42,502] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M52_hist.pdf [2026-03-13 17:41:42,550] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:42,553] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:42,554] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:42,554] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:42,559] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:42,560] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:42,560] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:42,560] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:42,560] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:42,560] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:42,560] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:42,560] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:42,579] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:43,505] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:43,509] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:43,525] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:43,526] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:43,533] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:43,533] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:43,533] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:43,533] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:43,534] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:43,534] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:43,534] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:43,534] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:43,558] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M52_featureCounts.out [2026-03-13 17:41:44,439] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M52_metrics [2026-03-13 17:41:44,442] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M52_metrics [2026-03-13 17:41:44,446] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M52_metrics [2026-03-13 17:41:44,487] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 50_R2_001.fastq.gz [2026-03-13 17:41:44,487] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 50_R1_001.fastq.gz [2026-03-13 17:41:44,617] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-03-13 17:41:44,621] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-03-13 17:41:44,621] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-03-13 17:41:44,621] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-03-13 17:41:44,627] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-03-13 17:41:44,627] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-03-13 17:41:44,627] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-03-13 17:41:44,627] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-03-13 17:41:44,627] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-03-13 17:41:44,627] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-03-13 17:41:44,627] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-03-13 17:41:44,627] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-03-13 17:41:44,627] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-03-13 17:41:44,627] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M50_SJ.out.tab [2026-03-13 17:41:47,161] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M50_marked_dup_metrics.txt [2026-03-13 17:41:47,165] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M50_marked_dup_metrics.txt [2026-03-13 17:41:47,166] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M50_marked_dup_metrics.txt [2026-03-13 17:41:47,166] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M50_marked_dup_metrics.txt [2026-03-13 17:41:47,172] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M50_marked_dup_metrics.txt [2026-03-13 17:41:47,186] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M50_hist.pdf [2026-03-13 17:41:47,201] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M50_metrics [2026-03-13 17:41:47,204] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M50_metrics [2026-03-13 17:41:47,205] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M50_metrics [2026-03-13 17:41:47,205] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M50_metrics [2026-03-13 17:41:47,212] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M50_metrics [2026-03-13 17:41:47,340] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:47,344] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:47,344] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:47,345] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:47,351] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:47,351] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:47,351] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:47,351] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:47,351] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:47,351] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:47,351] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:47,351] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:47,372] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:48,315] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:48,320] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:48,320] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:48,320] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:48,329] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:48,329] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:48,329] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:48,329] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:48,329] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:48,329] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:48,329] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:48,329] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:48,359] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M50_featureCounts.out [2026-03-13 17:41:49,262] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M50_metrics [2026-03-13 17:41:49,265] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M50_metrics [2026-03-13 17:41:49,271] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M50_metrics [2026-03-13 17:41:49,322] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 61_R2_001.fastq.gz [2026-03-13 17:41:49,322] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 61_R1_001.fastq.gz [2026-03-13 17:41:49,470] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-03-13 17:41:49,474] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-03-13 17:41:49,475] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-03-13 17:41:49,475] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-03-13 17:41:49,482] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-03-13 17:41:49,482] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-03-13 17:41:49,482] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-03-13 17:41:49,482] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-03-13 17:41:49,482] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-03-13 17:41:49,482] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-03-13 17:41:49,482] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-03-13 17:41:49,482] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-03-13 17:41:49,482] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-03-13 17:41:49,482] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M61_SJ.out.tab [2026-03-13 17:41:52,174] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M61_marked_dup_metrics.txt [2026-03-13 17:41:52,179] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M61_marked_dup_metrics.txt [2026-03-13 17:41:52,180] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M61_marked_dup_metrics.txt [2026-03-13 17:41:52,180] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M61_marked_dup_metrics.txt [2026-03-13 17:41:52,186] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M61_marked_dup_metrics.txt [2026-03-13 17:41:52,203] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M61_hist.pdf [2026-03-13 17:41:52,227] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M61_metrics [2026-03-13 17:41:52,232] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M61_metrics [2026-03-13 17:41:52,232] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M61_metrics [2026-03-13 17:41:52,232] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M61_metrics [2026-03-13 17:41:52,238] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M61_metrics [2026-03-13 17:41:52,369] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:52,373] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:52,374] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:52,374] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:52,379] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:52,380] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:52,380] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:52,380] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:52,380] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:52,380] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:52,380] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:52,380] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:52,399] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:53,390] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:53,394] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:53,395] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:53,395] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:53,401] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:53,401] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:53,401] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:53,401] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:53,401] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:53,401] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:53,401] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:53,402] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:53,420] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M61_featureCounts.out [2026-03-13 17:41:54,300] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M61_metrics [2026-03-13 17:41:54,304] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M61_metrics [2026-03-13 17:41:54,313] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M61_metrics [2026-03-13 17:41:54,362] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 2-155_R1_001.fastq.gz [2026-03-13 17:41:54,363] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 2-155_R2_001.fastq.gz [2026-03-13 17:41:54,438] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M03_SJ.out.tab [2026-03-13 17:41:54,443] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M03_SJ.out.tab [2026-03-13 17:41:54,443] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M03_SJ.out.tab [2026-03-13 17:41:54,443] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M03_SJ.out.tab [2026-03-13 17:41:54,450] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M03_SJ.out.tab [2026-03-13 17:41:54,450] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M03_SJ.out.tab [2026-03-13 17:41:54,450] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M03_SJ.out.tab [2026-03-13 17:41:54,450] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M03_SJ.out.tab [2026-03-13 17:41:54,450] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M03_SJ.out.tab [2026-03-13 17:41:54,450] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M03_SJ.out.tab [2026-03-13 17:41:54,450] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M03_SJ.out.tab [2026-03-13 17:41:54,450] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M03_SJ.out.tab [2026-03-13 17:41:54,450] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M03_SJ.out.tab [2026-03-13 17:41:54,450] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M03_SJ.out.tab [2026-03-13 17:41:57,423] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:57,427] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:57,428] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:57,428] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:57,434] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:57,434] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:57,435] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:57,435] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:57,435] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:57,435] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:57,435] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:57,435] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:57,455] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:58,415] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:58,420] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:58,420] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:58,420] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:58,426] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:58,426] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:58,426] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:58,426] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:58,426] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:58,426] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:58,426] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:58,426] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:58,446] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M03_featureCounts.out [2026-03-13 17:41:59,359] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 6-143_R2_001.fastq.gz [2026-03-13 17:41:59,360] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 6-143_R1_001.fastq.gz [2026-03-13 17:41:59,448] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M01_SJ.out.tab [2026-03-13 17:41:59,452] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M01_SJ.out.tab [2026-03-13 17:41:59,452] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M01_SJ.out.tab [2026-03-13 17:41:59,452] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M01_SJ.out.tab [2026-03-13 17:41:59,458] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M01_SJ.out.tab [2026-03-13 17:41:59,458] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M01_SJ.out.tab [2026-03-13 17:41:59,458] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M01_SJ.out.tab [2026-03-13 17:41:59,458] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M01_SJ.out.tab [2026-03-13 17:41:59,458] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M01_SJ.out.tab [2026-03-13 17:41:59,458] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M01_SJ.out.tab [2026-03-13 17:41:59,458] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M01_SJ.out.tab [2026-03-13 17:41:59,458] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M01_SJ.out.tab [2026-03-13 17:41:59,458] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M01_SJ.out.tab [2026-03-13 17:41:59,458] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M01_SJ.out.tab [2026-03-13 17:42:02,427] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:02,431] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:02,432] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:02,432] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:02,438] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:02,438] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:02,438] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:02,439] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:02,439] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:02,439] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:02,439] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:02,439] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:02,464] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:03,454] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:03,458] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:03,459] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:03,459] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:03,465] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:03,465] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:03,465] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:03,465] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:03,465] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:03,465] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:03,465] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:03,465] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:03,485] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M01_featureCounts.out [2026-03-13 17:42:04,409] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 17-592C_R1_001.fastq.gz [2026-03-13 17:42:04,435] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 17-592C_R2_001.fastq.gz [2026-03-13 17:42:04,567] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M14_SJ.out.tab [2026-03-13 17:42:04,571] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M14_SJ.out.tab [2026-03-13 17:42:04,572] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M14_SJ.out.tab [2026-03-13 17:42:04,572] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M14_SJ.out.tab [2026-03-13 17:42:04,577] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M14_SJ.out.tab [2026-03-13 17:42:04,577] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M14_SJ.out.tab [2026-03-13 17:42:04,577] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M14_SJ.out.tab [2026-03-13 17:42:04,577] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M14_SJ.out.tab [2026-03-13 17:42:04,577] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M14_SJ.out.tab [2026-03-13 17:42:04,577] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M14_SJ.out.tab [2026-03-13 17:42:04,577] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M14_SJ.out.tab [2026-03-13 17:42:04,577] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M14_SJ.out.tab [2026-03-13 17:42:04,577] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M14_SJ.out.tab [2026-03-13 17:42:04,578] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M14_SJ.out.tab [2026-03-13 17:42:07,591] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:07,596] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:07,596] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:07,596] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:07,602] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:07,602] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:07,602] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:07,602] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:07,602] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:07,602] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:07,602] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:07,602] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:07,622] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:08,561] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:08,566] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:08,566] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:08,567] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:08,572] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:08,572] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:08,572] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:08,572] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:08,572] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:08,572] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:08,572] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:08,572] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:08,591] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M14_featureCounts.out [2026-03-13 17:42:09,544] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5-157_R2_001.fastq.gz [2026-03-13 17:42:09,568] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5-157_R1_001.fastq.gz [2026-03-13 17:42:09,706] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M12_SJ.out.tab [2026-03-13 17:42:09,710] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M12_SJ.out.tab [2026-03-13 17:42:09,711] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M12_SJ.out.tab [2026-03-13 17:42:09,711] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M12_SJ.out.tab [2026-03-13 17:42:09,717] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M12_SJ.out.tab [2026-03-13 17:42:09,717] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M12_SJ.out.tab [2026-03-13 17:42:09,717] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M12_SJ.out.tab [2026-03-13 17:42:09,717] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M12_SJ.out.tab [2026-03-13 17:42:09,717] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M12_SJ.out.tab [2026-03-13 17:42:09,717] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M12_SJ.out.tab [2026-03-13 17:42:09,717] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M12_SJ.out.tab [2026-03-13 17:42:09,718] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M12_SJ.out.tab [2026-03-13 17:42:09,718] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M12_SJ.out.tab [2026-03-13 17:42:09,718] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M12_SJ.out.tab [2026-03-13 17:42:12,611] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:12,614] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:12,615] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:12,615] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:12,621] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:12,621] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:12,621] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:12,622] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:12,622] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:12,622] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:12,622] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:12,622] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:12,641] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:13,592] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:13,596] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:13,597] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:13,597] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:13,604] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:13,604] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:13,604] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:13,604] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:13,604] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:13,604] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:13,605] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:13,605] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:13,625] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M12_featureCounts.out [2026-03-13 17:42:14,542] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 36_R2_001.fastq.gz [2026-03-13 17:42:14,543] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 36_R1_001.fastq.gz [2026-03-13 17:42:14,662] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-03-13 17:42:14,677] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-03-13 17:42:14,678] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-03-13 17:42:14,678] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-03-13 17:42:14,685] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-03-13 17:42:14,685] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-03-13 17:42:14,685] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-03-13 17:42:14,685] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-03-13 17:42:14,685] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-03-13 17:42:14,685] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-03-13 17:42:14,685] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-03-13 17:42:14,685] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-03-13 17:42:14,685] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-03-13 17:42:14,685] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M36_SJ.out.tab [2026-03-13 17:42:17,638] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M36_marked_dup_metrics.txt [2026-03-13 17:42:17,641] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M36_marked_dup_metrics.txt [2026-03-13 17:42:17,642] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M36_marked_dup_metrics.txt [2026-03-13 17:42:17,642] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M36_marked_dup_metrics.txt [2026-03-13 17:42:17,650] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M36_marked_dup_metrics.txt [2026-03-13 17:42:17,669] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M36_hist.pdf [2026-03-13 17:42:17,696] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M36_metrics [2026-03-13 17:42:17,700] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M36_metrics [2026-03-13 17:42:17,700] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M36_metrics [2026-03-13 17:42:17,700] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M36_metrics [2026-03-13 17:42:17,707] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M36_metrics [2026-03-13 17:42:17,841] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:17,845] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:17,845] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:17,845] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:17,853] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:17,853] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:17,853] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:17,853] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:17,853] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:17,853] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:17,853] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:17,853] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:17,873] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:18,795] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:18,800] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:18,800] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:18,800] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:18,805] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:18,806] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:18,806] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:18,806] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:18,806] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:18,806] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:18,806] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:18,806] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:18,825] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M36_featureCounts.out [2026-03-13 17:42:19,700] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M36_metrics [2026-03-13 17:42:19,704] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M36_metrics [2026-03-13 17:42:19,725] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M36_metrics [2026-03-13 17:42:19,781] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 34_R1_001.fastq.gz [2026-03-13 17:42:19,782] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 34_R2_001.fastq.gz [2026-03-13 17:42:19,944] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-03-13 17:42:19,949] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-03-13 17:42:19,949] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-03-13 17:42:19,950] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-03-13 17:42:19,956] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-03-13 17:42:19,956] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-03-13 17:42:19,956] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-03-13 17:42:19,956] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-03-13 17:42:19,956] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-03-13 17:42:19,956] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-03-13 17:42:19,956] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-03-13 17:42:19,956] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-03-13 17:42:19,956] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-03-13 17:42:19,956] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M34_SJ.out.tab [2026-03-13 17:42:22,808] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M34_marked_dup_metrics.txt [2026-03-13 17:42:22,812] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M34_marked_dup_metrics.txt [2026-03-13 17:42:22,813] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M34_marked_dup_metrics.txt [2026-03-13 17:42:22,813] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M34_marked_dup_metrics.txt [2026-03-13 17:42:22,820] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M34_marked_dup_metrics.txt [2026-03-13 17:42:22,838] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M34_hist.pdf [2026-03-13 17:42:22,868] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M34_metrics [2026-03-13 17:42:22,872] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M34_metrics [2026-03-13 17:42:22,873] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M34_metrics [2026-03-13 17:42:22,873] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M34_metrics [2026-03-13 17:42:22,879] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M34_metrics [2026-03-13 17:42:23,027] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:23,030] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:23,030] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:23,030] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:23,035] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:23,036] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:23,036] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:23,036] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:23,036] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:23,036] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:23,036] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:23,036] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:23,055] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:24,010] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:24,013] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:24,013] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:24,013] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:24,019] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:24,019] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:24,019] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:24,019] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:24,019] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:24,019] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:24,019] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:24,019] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:24,038] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M34_featureCounts.out [2026-03-13 17:42:24,970] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M34_metrics [2026-03-13 17:42:24,973] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M34_metrics [2026-03-13 17:42:24,979] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M34_metrics [2026-03-13 17:42:25,027] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 47_R2_001.fastq.gz [2026-03-13 17:42:25,028] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 47_R1_001.fastq.gz [2026-03-13 17:42:25,205] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-03-13 17:42:25,210] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-03-13 17:42:25,210] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-03-13 17:42:25,210] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-03-13 17:42:25,216] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-03-13 17:42:25,216] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-03-13 17:42:25,216] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-03-13 17:42:25,217] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-03-13 17:42:25,217] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-03-13 17:42:25,217] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-03-13 17:42:25,217] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-03-13 17:42:25,217] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-03-13 17:42:25,217] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-03-13 17:42:25,217] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M47_SJ.out.tab [2026-03-13 17:42:27,862] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M47_marked_dup_metrics.txt [2026-03-13 17:42:27,866] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M47_marked_dup_metrics.txt [2026-03-13 17:42:27,867] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M47_marked_dup_metrics.txt [2026-03-13 17:42:27,867] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M47_marked_dup_metrics.txt [2026-03-13 17:42:27,873] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M47_marked_dup_metrics.txt [2026-03-13 17:42:27,908] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M47_metrics [2026-03-13 17:42:27,910] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M47_metrics [2026-03-13 17:42:27,911] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M47_metrics [2026-03-13 17:42:27,911] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M47_metrics [2026-03-13 17:42:27,915] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M47_metrics [2026-03-13 17:42:28,002] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M47_hist.pdf [2026-03-13 17:42:28,051] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:28,055] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:28,056] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:28,056] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:28,063] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:28,063] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:28,063] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:28,063] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:28,063] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:28,063] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:28,063] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:28,064] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:28,088] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:29,027] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:29,029] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:29,030] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:29,030] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:29,036] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:29,036] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:29,036] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:29,036] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:29,036] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:29,036] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:29,036] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:29,036] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:29,055] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M47_featureCounts.out [2026-03-13 17:42:29,994] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M47_metrics [2026-03-13 17:42:29,998] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M47_metrics [2026-03-13 17:42:30,173] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M47_metrics [2026-03-13 17:42:30,232] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 45_R1_001.fastq.gz [2026-03-13 17:42:30,232] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 45_R2_001.fastq.gz [2026-03-13 17:42:30,318] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-03-13 17:42:30,322] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-03-13 17:42:30,322] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-03-13 17:42:30,322] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-03-13 17:42:30,328] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-03-13 17:42:30,328] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-03-13 17:42:30,328] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-03-13 17:42:30,329] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-03-13 17:42:30,329] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-03-13 17:42:30,329] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-03-13 17:42:30,329] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-03-13 17:42:30,329] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-03-13 17:42:30,329] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-03-13 17:42:30,329] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M45_SJ.out.tab [2026-03-13 17:42:33,144] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M45_marked_dup_metrics.txt [2026-03-13 17:42:33,147] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M45_marked_dup_metrics.txt [2026-03-13 17:42:33,147] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M45_marked_dup_metrics.txt [2026-03-13 17:42:33,147] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M45_marked_dup_metrics.txt [2026-03-13 17:42:33,153] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M45_marked_dup_metrics.txt [2026-03-13 17:42:33,186] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M45_hist.pdf [2026-03-13 17:42:33,203] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M45_metrics [2026-03-13 17:42:33,207] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M45_metrics [2026-03-13 17:42:33,207] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M45_metrics [2026-03-13 17:42:33,207] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M45_metrics [2026-03-13 17:42:33,214] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M45_metrics [2026-03-13 17:42:33,329] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:33,334] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:33,335] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:33,335] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:33,342] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:33,342] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:33,342] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:33,342] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:33,342] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:33,342] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:33,342] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:33,342] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:33,362] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:34,347] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:34,351] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:34,352] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:34,352] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:34,359] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:34,359] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:34,359] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:34,359] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:34,359] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:34,359] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:34,359] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:34,359] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:34,379] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M45_featureCounts.out [2026-03-13 17:42:35,281] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M45_metrics [2026-03-13 17:42:35,284] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M45_metrics [2026-03-13 17:42:35,289] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M45_metrics [2026-03-13 17:42:35,339] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 58_R2_001.fastq.gz [2026-03-13 17:42:35,340] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 58_R1_001.fastq.gz [2026-03-13 17:42:35,439] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-03-13 17:42:35,443] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-03-13 17:42:35,444] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-03-13 17:42:35,444] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-03-13 17:42:35,451] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-03-13 17:42:35,451] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-03-13 17:42:35,451] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-03-13 17:42:35,451] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-03-13 17:42:35,451] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-03-13 17:42:35,451] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-03-13 17:42:35,451] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-03-13 17:42:35,451] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-03-13 17:42:35,451] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-03-13 17:42:35,451] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M58_SJ.out.tab [2026-03-13 17:42:38,163] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M58_marked_dup_metrics.txt [2026-03-13 17:42:38,167] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M58_marked_dup_metrics.txt [2026-03-13 17:42:38,168] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M58_marked_dup_metrics.txt [2026-03-13 17:42:38,168] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M58_marked_dup_metrics.txt [2026-03-13 17:42:38,176] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M58_marked_dup_metrics.txt [2026-03-13 17:42:38,197] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M58_hist.pdf [2026-03-13 17:42:38,214] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M58_metrics [2026-03-13 17:42:38,218] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M58_metrics [2026-03-13 17:42:38,219] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M58_metrics [2026-03-13 17:42:38,219] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M58_metrics [2026-03-13 17:42:38,226] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M58_metrics [2026-03-13 17:42:38,337] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:38,341] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:38,341] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:38,342] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:38,348] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:38,348] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:38,348] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:38,348] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:38,348] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:38,348] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:38,348] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:38,348] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:38,379] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:39,303] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:39,307] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:39,308] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:39,308] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:39,315] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:39,315] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:39,315] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:39,315] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:39,315] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:39,315] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:39,315] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:39,315] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:39,335] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M58_featureCounts.out [2026-03-13 17:42:40,232] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M58_metrics [2026-03-13 17:42:40,235] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M58_metrics [2026-03-13 17:42:40,240] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M58_metrics [2026-03-13 17:42:40,289] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 31_R2_001.fastq.gz [2026-03-13 17:42:40,290] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 31_R1_001.fastq.gz [2026-03-13 17:42:40,460] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-03-13 17:42:40,463] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-03-13 17:42:40,463] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-03-13 17:42:40,464] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-03-13 17:42:40,469] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-03-13 17:42:40,469] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-03-13 17:42:40,469] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-03-13 17:42:40,469] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-03-13 17:42:40,469] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-03-13 17:42:40,469] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-03-13 17:42:40,469] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-03-13 17:42:40,469] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-03-13 17:42:40,469] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-03-13 17:42:40,469] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G253_M31_SJ.out.tab [2026-03-13 17:42:43,133] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M31_marked_dup_metrics.txt [2026-03-13 17:42:43,137] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M31_marked_dup_metrics.txt [2026-03-13 17:42:43,138] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M31_marked_dup_metrics.txt [2026-03-13 17:42:43,138] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M31_marked_dup_metrics.txt [2026-03-13 17:42:43,143] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M31_marked_dup_metrics.txt [2026-03-13 17:42:43,184] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M31_metrics [2026-03-13 17:42:43,188] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G253_M31_metrics [2026-03-13 17:42:43,189] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G253_M31_metrics [2026-03-13 17:42:43,189] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G253_M31_metrics [2026-03-13 17:42:43,195] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G253_M31_metrics [2026-03-13 17:42:43,271] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G253_M31_hist.pdf [2026-03-13 17:42:43,317] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G253_M31_featureCounts.out [2026-03-13 17:42:43,319] multiqc [DEBUG ] File ignored by 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[2026-03-13 17:42:45,542] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M55.o3435220 [2026-03-13 17:42:45,554] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M56.o3435221 [2026-03-13 17:42:45,557] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M56.o3435221 [2026-03-13 17:42:45,560] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M56.o3435221 [2026-03-13 17:42:45,594] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M33.o3435198 [2026-03-13 17:42:45,597] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 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multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M31.o3435196 [2026-03-13 17:42:45,812] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M31.o3435196 [2026-03-13 17:42:45,817] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M31.o3435196 [2026-03-13 17:42:45,831] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M40.o3435205 [2026-03-13 17:42:45,835] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G253_RNASEQ_DevinKenney_G253_M40.o3435205 [2026-03-13 17:42:45,839] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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Step_06_G253_RNASEQ_DevinKenney_G253_M41.o3435505 [2026-03-13 17:43:05,836] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M41.o3435505 [2026-03-13 17:43:05,836] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M41.o3435505 [2026-03-13 17:43:05,842] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M41.o3435505 [2026-03-13 17:43:05,864] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M51.o3435515 [2026-03-13 17:43:05,866] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M51.o3435515 [2026-03-13 17:43:05,867] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M51.o3435515 [2026-03-13 17:43:05,867] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M51.o3435515 [2026-03-13 17:43:05,873] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M51.o3435515 [2026-03-13 17:43:05,896] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M33.o3435497 [2026-03-13 17:43:05,899] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M33.o3435497 [2026-03-13 17:43:05,899] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M33.o3435497 [2026-03-13 17:43:05,899] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M33.o3435497 [2026-03-13 17:43:05,905] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M33.o3435497 [2026-03-13 17:43:05,926] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M53.o3435517 [2026-03-13 17:43:05,929] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M53.o3435517 [2026-03-13 17:43:05,930] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M53.o3435517 [2026-03-13 17:43:05,930] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M53.o3435517 [2026-03-13 17:43:05,934] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M53.o3435517 [2026-03-13 17:43:05,957] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M49.o3435513 [2026-03-13 17:43:05,960] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M49.o3435513 [2026-03-13 17:43:05,960] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M49.o3435513 [2026-03-13 17:43:05,961] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M49.o3435513 [2026-03-13 17:43:05,966] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M49.o3435513 [2026-03-13 17:43:05,987] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M57.o3435521 [2026-03-13 17:43:05,990] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M57.o3435521 [2026-03-13 17:43:05,991] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M57.o3435521 [2026-03-13 17:43:05,991] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M57.o3435521 [2026-03-13 17:43:05,995] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M57.o3435521 [2026-03-13 17:43:06,015] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M46.o3435510 [2026-03-13 17:43:06,017] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M46.o3435510 [2026-03-13 17:43:06,017] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M46.o3435510 [2026-03-13 17:43:06,017] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M46.o3435510 [2026-03-13 17:43:06,023] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M46.o3435510 [2026-03-13 17:43:06,047] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M44.o3435508 [2026-03-13 17:43:06,049] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M44.o3435508 [2026-03-13 17:43:06,050] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M44.o3435508 [2026-03-13 17:43:06,050] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M44.o3435508 [2026-03-13 17:43:06,056] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M44.o3435508 [2026-03-13 17:43:06,076] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M32.o3435496 [2026-03-13 17:43:06,079] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M32.o3435496 [2026-03-13 17:43:06,079] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M32.o3435496 [2026-03-13 17:43:06,079] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M32.o3435496 [2026-03-13 17:43:06,083] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M32.o3435496 [2026-03-13 17:43:06,107] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M38.o3435502 [2026-03-13 17:43:06,110] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M38.o3435502 [2026-03-13 17:43:06,111] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M38.o3435502 [2026-03-13 17:43:06,111] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M38.o3435502 [2026-03-13 17:43:06,117] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M38.o3435502 [2026-03-13 17:43:06,138] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M35.o3435499 [2026-03-13 17:43:06,141] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M35.o3435499 [2026-03-13 17:43:06,141] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M35.o3435499 [2026-03-13 17:43:06,141] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M35.o3435499 [2026-03-13 17:43:06,147] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M35.o3435499 [2026-03-13 17:43:06,169] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M58.o3435522 [2026-03-13 17:43:06,172] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M58.o3435522 [2026-03-13 17:43:06,172] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M58.o3435522 [2026-03-13 17:43:06,172] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M58.o3435522 [2026-03-13 17:43:06,177] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M58.o3435522 [2026-03-13 17:43:06,199] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M39.o3435503 [2026-03-13 17:43:06,203] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M39.o3435503 [2026-03-13 17:43:06,204] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M39.o3435503 [2026-03-13 17:43:06,204] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M39.o3435503 [2026-03-13 17:43:06,212] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M39.o3435503 [2026-03-13 17:43:06,236] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M34.o3435498 [2026-03-13 17:43:06,239] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M34.o3435498 [2026-03-13 17:43:06,239] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M34.o3435498 [2026-03-13 17:43:06,239] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M34.o3435498 [2026-03-13 17:43:06,244] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M34.o3435498 [2026-03-13 17:43:06,266] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M50.o3435514 [2026-03-13 17:43:06,270] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M50.o3435514 [2026-03-13 17:43:06,271] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M50.o3435514 [2026-03-13 17:43:06,271] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M50.o3435514 [2026-03-13 17:43:06,277] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M50.o3435514 [2026-03-13 17:43:06,299] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M61.o3435525 [2026-03-13 17:43:06,302] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M61.o3435525 [2026-03-13 17:43:06,302] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M61.o3435525 [2026-03-13 17:43:06,302] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M61.o3435525 [2026-03-13 17:43:06,307] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M61.o3435525 [2026-03-13 17:43:06,329] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M59.o3435523 [2026-03-13 17:43:06,332] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M59.o3435523 [2026-03-13 17:43:06,333] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M59.o3435523 [2026-03-13 17:43:06,333] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M59.o3435523 [2026-03-13 17:43:06,339] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G253_RNASEQ_DevinKenney_G253_M59.o3435523 [2026-03-13 17:43:06,361] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-03-13 17:43:06,364] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-03-13 17:43:06,368] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-03-13 17:43:06,380] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-03-13 17:43:06,384] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-03-13 17:43:06,389] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-03-13 17:43:06,400] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2026-03-13 17:43:06,425] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2026-03-13 17:43:06,429] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2026-03-13 17:43:06,429] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2026-03-13 17:43:06,429] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2026-03-13 17:43:06,436] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2026-03-13 17:43:06,436] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2026-03-13 17:43:06,436] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2026-03-13 17:43:06,436] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2026-03-13 17:43:06,437] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2026-03-13 17:43:06,437] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2026-03-13 17:43:06,437] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2026-03-13 17:43:06,437] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2026-03-13 17:43:06,437] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2026-03-13 17:43:06,437] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2026-03-13 17:43:07,267] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-03-13 17:43:07,271] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-03-13 17:43:07,272] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-03-13 17:43:07,272] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-03-13 17:43:07,278] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-03-13 17:43:07,334] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-03-13 17:43:07,338] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-03-13 17:43:07,338] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-03-13 17:43:07,338] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-03-13 17:43:07,346] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-03-13 17:43:10,019] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2026-03-13 17:43:10,036] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2026-03-13 17:43:10,040] multiqc [DEBUG ] No samples found: custom_content [2026-03-13 17:43:10,059] multiqc [DEBUG ] No samples found: ccs [2026-03-13 17:43:10,085] multiqc [DEBUG ] No samples found: ngsderive [2026-03-13 17:43:10,105] multiqc [DEBUG ] No samples found: purple [2026-03-13 17:43:10,115] multiqc [DEBUG ] No samples found: conpair [2026-03-13 17:43:10,135] multiqc [DEBUG ] No samples found: lima [2026-03-13 17:43:10,158] multiqc [DEBUG ] No samples found: peddy [2026-03-13 17:43:10,186] multiqc [DEBUG ] No samples found: somalier [2026-03-13 17:43:10,220] multiqc [DEBUG ] No samples found: methylQA [2026-03-13 17:43:10,276] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2026-03-13 17:43:10,277] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2026-03-13 17:43:10,277] multiqc [DEBUG ] No samples found: mosdepth [2026-03-13 17:43:10,287] multiqc [DEBUG ] No samples found: phantompeakqualtools [2026-03-13 17:43:10,307] multiqc [DEBUG ] No samples found: qualimap [2026-03-13 17:43:10,326] multiqc [DEBUG ] No samples found: preseq [2026-03-13 17:43:10,344] multiqc [DEBUG ] No samples found: quast [2026-03-13 17:43:10,366] multiqc [DEBUG ] No samples found: qorts [2026-03-13 17:43:10,387] multiqc [DEBUG ] No samples found: rna_seqc [2026-03-13 17:43:10,405] multiqc [DEBUG ] No samples found: rockhopper [2026-03-13 17:43:10,429] multiqc [DEBUG ] No samples found: rsem [2026-03-13 17:43:10,541] multiqc.modules.rseqc.rseqc [INFO ] Found 48 infer_experiment reports [2026-03-13 17:43:10,562] multiqc [DEBUG ] No samples found: busco [2026-03-13 17:43:10,574] multiqc [DEBUG ] No samples found: bustools [2026-03-13 17:43:10,588] multiqc [DEBUG ] No samples found: goleft_indexcov [2026-03-13 17:43:10,608] multiqc [DEBUG ] No samples found: gffcompare [2026-03-13 17:43:10,617] multiqc [DEBUG ] No samples found: disambiguate [2026-03-13 17:43:10,639] multiqc [DEBUG ] No samples found: supernova [2026-03-13 17:43:10,717] multiqc [DEBUG ] No samples found: deeptools [2026-03-13 17:43:10,743] multiqc [DEBUG ] No samples found: sargasso [2026-03-13 17:43:10,764] multiqc [DEBUG ] No samples found: verifybamid [2026-03-13 17:43:10,794] multiqc [DEBUG ] No samples found: mirtrace [2026-03-13 17:43:10,818] multiqc [DEBUG ] No samples found: happy [2026-03-13 17:43:10,847] multiqc [DEBUG ] No samples found: mirtop [2026-03-13 17:43:10,888] multiqc [DEBUG ] No samples found: sambamba [2026-03-13 17:43:10,919] multiqc [DEBUG ] No samples found: homer [2026-03-13 17:43:10,949] multiqc [DEBUG ] No samples found: hops [2026-03-13 17:43:10,979] multiqc [DEBUG ] No samples found: macs2 [2026-03-13 17:43:10,989] multiqc [DEBUG ] No samples found: theta2 [2026-03-13 17:43:11,019] multiqc [DEBUG ] No samples found: snpeff [2026-03-13 17:43:11,081] multiqc [DEBUG ] No samples found: gatk [2026-03-13 17:43:11,091] multiqc [DEBUG ] No samples found: htseq [2026-03-13 17:43:11,118] multiqc [DEBUG ] No samples found: bcftools [2026-03-13 17:43:11,137] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M42_sorted [2026-03-13 17:43:11,140] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M09_sorted [2026-03-13 17:43:11,143] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M40_sorted [2026-03-13 17:43:11,146] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M07_sorted [2026-03-13 17:43:11,150] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M53_sorted [2026-03-13 17:43:11,153] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M51_sorted [2026-03-13 17:43:11,156] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M04_sorted [2026-03-13 17:43:11,159] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M02_sorted [2026-03-13 17:43:11,163] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M15_sorted [2026-03-13 17:43:11,166] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M13_sorted [2026-03-13 17:43:11,169] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M39_sorted [2026-03-13 17:43:11,172] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M37_sorted [2026-03-13 17:43:11,175] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M10_sorted [2026-03-13 17:43:11,178] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M48_sorted [2026-03-13 17:43:11,181] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M59_sorted [2026-03-13 17:43:11,184] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M32_sorted [2026-03-13 17:43:11,187] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M43_sorted [2026-03-13 17:43:11,191] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M56_sorted [2026-03-13 17:43:11,194] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M54_sorted [2026-03-13 17:43:11,197] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M05_sorted [2026-03-13 17:43:11,200] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M16_sorted [2026-03-13 17:43:11,203] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M62_sorted [2026-03-13 17:43:11,206] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M60_sorted [2026-03-13 17:43:11,210] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M38_sorted [2026-03-13 17:43:11,213] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M11_sorted [2026-03-13 17:43:11,216] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M49_sorted [2026-03-13 17:43:11,219] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M35_sorted [2026-03-13 17:43:11,222] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M33_sorted [2026-03-13 17:43:11,225] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M46_sorted [2026-03-13 17:43:11,228] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M44_sorted [2026-03-13 17:43:11,231] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M57_sorted [2026-03-13 17:43:11,234] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M55_sorted [2026-03-13 17:43:11,237] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M41_sorted [2026-03-13 17:43:11,240] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M08_sorted [2026-03-13 17:43:11,243] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M06_sorted [2026-03-13 17:43:11,246] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M52_sorted [2026-03-13 17:43:11,249] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M50_sorted [2026-03-13 17:43:11,252] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M61_sorted [2026-03-13 17:43:11,255] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M03_sorted [2026-03-13 17:43:11,258] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M01_sorted [2026-03-13 17:43:11,261] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M14_sorted [2026-03-13 17:43:11,263] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M12_sorted [2026-03-13 17:43:11,265] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M36_sorted [2026-03-13 17:43:11,267] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M34_sorted [2026-03-13 17:43:11,269] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M47_sorted [2026-03-13 17:43:11,270] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M45_sorted [2026-03-13 17:43:11,272] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M58_sorted [2026-03-13 17:43:11,273] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G253_M31_sorted [2026-03-13 17:43:11,273] multiqc.modules.featureCounts.feature_counts [INFO ] Found 48 reports [2026-03-13 17:43:11,318] multiqc [DEBUG ] No samples found: fgbio [2026-03-13 17:43:11,409] multiqc [DEBUG ] No samples found: dragen [2026-03-13 17:43:11,436] multiqc [DEBUG ] No samples found: dedup [2026-03-13 17:43:11,460] multiqc [DEBUG ] No samples found: damageprofiler [2026-03-13 17:43:11,653] multiqc [DEBUG ] No samples found: biobambam2 [2026-03-13 17:43:11,678] multiqc [DEBUG ] No samples found: jcvi [2026-03-13 17:43:11,688] multiqc [DEBUG ] No samples found: mtnucratio [2026-03-13 17:43:13,756] multiqc.modules.picard.picard [INFO ] Found 32 InsertSizeMetrics reports [2026-03-13 17:43:13,804] multiqc.modules.picard.picard [INFO ] Found 32 MarkDuplicates reports [2026-03-13 17:43:13,899] multiqc.modules.picard.picard [INFO ] Found 32 RnaSeqMetrics reports [2026-03-13 17:43:13,919] multiqc [DEBUG ] No samples found: vep [2026-03-13 17:43:13,939] multiqc [DEBUG ] No samples found: sentieon [2026-03-13 17:43:13,968] multiqc [DEBUG ] No samples found: prokka [2026-03-13 17:43:13,995] multiqc [DEBUG ] No samples found: qc3C [2026-03-13 17:43:14,016] multiqc [DEBUG ] No samples found: nanostat [2026-03-13 17:43:14,026] multiqc [DEBUG ] No samples found: samblaster [2026-03-13 17:43:14,123] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,130] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,132] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,146] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,150] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,160] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,163] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,166] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,170] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,173] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,176] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,185] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,187] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,190] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,195] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,198] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,201] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,203] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,207] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,210] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,212] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,216] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,223] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,225] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,229] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,245] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,247] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,251] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,254] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,256] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,258] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-03-13 17:43:14,267] multiqc.modules.samtools.samtools [INFO ] Found 145 flagstat reports [2026-03-13 17:43:14,284] multiqc [DEBUG ] No samples found: sexdeterrmine [2026-03-13 17:43:14,290] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2026-03-13 17:43:14,297] multiqc [DEBUG ] No samples found: bamtools [2026-03-13 17:43:14,302] multiqc [DEBUG ] No samples found: jellyfish [2026-03-13 17:43:14,313] multiqc [DEBUG ] No samples found: vcftools [2026-03-13 17:43:14,342] multiqc [DEBUG ] No samples found: longranger [2026-03-13 17:43:14,384] multiqc [DEBUG ] No samples found: stacks [2026-03-13 17:43:14,407] multiqc [DEBUG ] No samples found: varscan2 [2026-03-13 17:43:14,436] multiqc [DEBUG ] No samples found: snippy [2026-03-13 17:43:14,501] multiqc [DEBUG ] No samples found: bbmap [2026-03-13 17:43:14,527] multiqc [DEBUG ] No samples found: bismark [2026-03-13 17:43:14,555] multiqc [DEBUG ] No samples found: biscuit [2026-03-13 17:43:14,581] multiqc [DEBUG ] No samples found: hicexplorer [2026-03-13 17:43:14,602] multiqc [DEBUG ] No samples found: hicup [2026-03-13 17:43:14,618] multiqc [DEBUG ] No samples found: hicpro [2026-03-13 17:43:14,628] multiqc [DEBUG ] No samples found: salmon [2026-03-13 17:43:14,649] multiqc [DEBUG ] No samples found: kallisto [2026-03-13 17:43:14,671] multiqc [DEBUG ] No samples found: slamdunk [2026-03-13 17:43:20,036] multiqc.modules.star.star [INFO ] Found 48 reports and 48 gene count files [2026-03-13 17:43:20,055] multiqc [DEBUG ] No samples found: hisat2 [2026-03-13 17:43:20,082] multiqc [DEBUG ] No samples found: tophat [2026-03-13 17:43:20,175] multiqc [DEBUG ] No samples found: bowtie2 [2026-03-13 17:43:20,213] multiqc [DEBUG ] No samples found: bowtie1 [2026-03-13 17:43:20,244] multiqc [DEBUG ] No samples found: snpsplit [2026-03-13 17:43:20,263] multiqc [DEBUG ] No samples found: odgi [2026-03-13 17:43:20,285] multiqc [DEBUG ] No samples found: pangolin [2026-03-13 17:43:20,295] multiqc [DEBUG ] No samples found: kat [2026-03-13 17:43:20,305] multiqc [DEBUG ] No samples found: leehom [2026-03-13 17:43:20,322] multiqc [DEBUG ] No samples found: adapterRemoval [2026-03-13 17:43:20,332] multiqc [DEBUG ] No samples found: clipandmerge [2026-03-13 17:43:20,360] multiqc [DEBUG ] No samples found: cutadapt [2026-03-13 17:43:20,370] multiqc [DEBUG ] No samples found: flexbar [2026-03-13 17:43:20,384] multiqc [DEBUG ] No samples found: kaiju [2026-03-13 17:43:20,399] multiqc [DEBUG ] No samples found: kraken [2026-03-13 17:43:20,419] multiqc [DEBUG ] No samples found: malt [2026-03-13 17:43:20,437] multiqc [DEBUG ] No samples found: trimmomatic [2026-03-13 17:43:20,480] multiqc [DEBUG ] No samples found: sickle [2026-03-13 17:43:20,510] multiqc [DEBUG ] No samples found: skewer [2026-03-13 17:43:20,520] multiqc [DEBUG ] No samples found: sortmerna [2026-03-13 17:43:20,529] multiqc [DEBUG ] No samples found: biobloomtools [2026-03-13 17:43:20,573] multiqc [DEBUG ] No samples found: fastq_screen [2026-03-13 17:43:20,601] multiqc [DEBUG ] No samples found: afterqc [2026-03-13 17:43:20,654] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:20,685] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:20,713] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:20,743] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:20,767] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:20,785] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:20,825] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:20,860] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:20,898] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:20,975] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:21,024] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:21,122] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:21,149] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:21,184] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:21,204] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:21,234] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:21,259] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:21,282] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:21,301] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:21,317] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:21,338] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:21,363] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:21,385] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:21,398] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:21,420] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:21,444] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:21,462] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:21,487] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:21,538] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:21,560] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:21,584] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:21,620] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-03-13 17:43:21,622] multiqc.modules.fastp.fastp [INFO ] Found 32 reports [2026-03-13 17:43:35,821] multiqc.modules.fastqc.fastqc [INFO ] Found 64 reports [2026-03-13 17:43:35,823] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2026-03-13 17:43:40,458] multiqc [DEBUG ] No samples found: pychopper [2026-03-13 17:43:40,473] multiqc [DEBUG ] No samples found: pycoqc [2026-03-13 17:43:40,496] multiqc [DEBUG ] No samples found: minionqc [2026-03-13 17:43:40,521] multiqc [DEBUG ] No samples found: multivcfanalyzer [2026-03-13 17:43:40,544] multiqc [DEBUG ] No samples found: clusterflow [2026-03-13 17:43:40,566] multiqc [DEBUG ] No samples found: bcl2fastq [2026-03-13 17:43:40,595] multiqc [DEBUG ] No samples found: bclconvert [2026-03-13 17:43:40,616] multiqc [DEBUG ] No samples found: interop [2026-03-13 17:43:40,643] multiqc [DEBUG ] No samples found: ivar [2026-03-13 17:43:40,664] multiqc [DEBUG ] No samples found: flash [2026-03-13 17:43:40,692] multiqc [DEBUG ] No samples found: seqyclean [2026-03-13 17:43:40,703] multiqc [DEBUG ] No samples found: optitype [2026-03-13 17:43:40,893] multiqc [INFO ] Compressing plot data [2026-03-13 17:43:44,104] multiqc [INFO ] Report : multiqc_report.html [2026-03-13 17:43:44,104] multiqc [INFO ] Data : multiqc_data [2026-03-13 17:43:44,104] multiqc [DEBUG ] Moving data file from '/scratch/tmpcrxhpdpy/multiqc_data' to '/projectnb/wax-dk/max/G253_RNASEQ_DevinKenney/Scripts/99_final_summary/G253_RNASEQ_DevinKenney_Run1_multiqc_report/multiqc_data' [2026-03-13 17:43:44,757] multiqc [INFO ] MultiQC complete [2026-03-13 17:43:44,757] multiqc [WARNING] 1 flat-image plot used in the report due to large sample numbers