[2025-09-29 13:28:05,684] multiqc [DEBUG ] This is MultiQC v1.11 [2025-09-29 13:28:05,684] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2025-09-29 13:28:05,685] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2025-09-29 13:28:05,687] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2025-09-29 13:28:05,688] multiqc [DEBUG ] Loading config settings from: /projectnb/wax-dk/max/G247_RNASEQ/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2025-09-29 13:28:05,688] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2025-09-29 13:28:05,689] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2025-09-29 13:28:05,689] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G247_RNASEQ/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G247_RNASEQ/SAMPLES /projectnb/wax-dk/max/G247_RNASEQ/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G247_RNASEQ/Scripts/06_CollectMetrics/ [2025-09-29 13:28:06,661] multiqc [WARNING] MultiQC Version v1.31 now available! [2025-09-29 13:28:06,661] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G247_RNASEQ/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G247_RNASEQ/SAMPLES /projectnb/wax-dk/max/G247_RNASEQ/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G247_RNASEQ/Scripts/06_CollectMetrics/ [2025-09-29 13:28:06,661] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G247_RNASEQ/Scripts/99_final_summary/G247_RNASEQ_woM11_multiqc_report [2025-09-29 13:28:06,661] multiqc [DEBUG ] Template : default [2025-09-29 13:28:06,661] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2025-09-29 13:28:06,662] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2025-09-29 13:28:06,662] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmp799hd08u [2025-09-29 13:28:06,974] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G247_RNASEQ/SAMPLES [2025-09-29 13:28:06,974] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G247_RNASEQ/Scripts/03_FASTQC [2025-09-29 13:28:06,974] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G247_RNASEQ/Scripts/06_CollectMetrics [2025-09-29 13:28:07,390] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M14_COMB_1.fq.gz [2025-09-29 13:28:07,390] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M14_COMB_2.fq.gz [2025-09-29 13:28:07,517] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-09-29 13:28:07,521] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-09-29 13:28:07,522] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-09-29 13:28:07,522] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-09-29 13:28:07,527] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-09-29 13:28:07,528] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-09-29 13:28:07,528] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-09-29 13:28:07,528] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-09-29 13:28:07,528] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-09-29 13:28:07,528] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-09-29 13:28:07,528] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-09-29 13:28:07,528] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-09-29 13:28:07,528] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-09-29 13:28:07,528] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-09-29 13:28:09,558] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M14_marked_dup_metrics.txt [2025-09-29 13:28:09,563] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M14_marked_dup_metrics.txt [2025-09-29 13:28:09,564] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M14_marked_dup_metrics.txt [2025-09-29 13:28:09,564] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M14_marked_dup_metrics.txt [2025-09-29 13:28:09,570] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M14_marked_dup_metrics.txt [2025-09-29 13:28:09,613] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M14_metrics [2025-09-29 13:28:09,617] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M14_metrics [2025-09-29 13:28:09,617] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M14_metrics [2025-09-29 13:28:09,617] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M14_metrics [2025-09-29 13:28:09,623] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M14_metrics [2025-09-29 13:28:09,675] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M14_hist.pdf [2025-09-29 13:28:09,726] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:09,730] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:09,730] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:09,730] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:09,736] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:09,736] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:09,736] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:09,736] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:09,736] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:09,737] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:09,737] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:09,737] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:09,756] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:10,685] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:10,689] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:10,690] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:10,690] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:10,696] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:10,696] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:10,696] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:10,696] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:10,696] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:10,696] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:10,696] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:10,696] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:10,717] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-09-29 13:28:11,605] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M14_metrics [2025-09-29 13:28:11,608] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M14_metrics [2025-09-29 13:28:11,613] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M14_metrics [2025-09-29 13:28:11,659] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M11_COMB_2.fq.gz [2025-09-29 13:28:11,665] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M11_COMB_1.fq.gz [2025-09-29 13:28:11,726] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-09-29 13:28:11,730] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-09-29 13:28:11,731] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-09-29 13:28:11,731] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-09-29 13:28:11,737] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-09-29 13:28:11,737] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-09-29 13:28:11,737] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-09-29 13:28:11,737] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-09-29 13:28:11,737] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-09-29 13:28:11,737] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-09-29 13:28:11,737] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-09-29 13:28:11,737] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-09-29 13:28:11,737] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-09-29 13:28:11,737] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-09-29 13:28:13,612] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M11_marked_dup_metrics.txt [2025-09-29 13:28:13,615] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M11_marked_dup_metrics.txt [2025-09-29 13:28:13,616] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M11_marked_dup_metrics.txt [2025-09-29 13:28:13,616] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M11_marked_dup_metrics.txt [2025-09-29 13:28:13,621] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M11_marked_dup_metrics.txt [2025-09-29 13:28:13,653] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M11_metrics [2025-09-29 13:28:13,655] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M11_metrics [2025-09-29 13:28:13,656] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M11_metrics [2025-09-29 13:28:13,656] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M11_metrics [2025-09-29 13:28:13,660] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M11_metrics [2025-09-29 13:28:13,718] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M11_hist.pdf [2025-09-29 13:28:13,760] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:13,762] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:13,763] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:13,763] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:13,768] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:13,768] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:13,768] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:13,768] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:13,768] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:13,768] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:13,768] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:13,768] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:13,786] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:14,721] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:14,724] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:14,724] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:14,724] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:14,728] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:14,728] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:14,728] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:14,728] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:14,728] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:14,728] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:14,728] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:14,729] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:14,747] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-09-29 13:28:15,646] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M11_metrics [2025-09-29 13:28:15,649] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M11_metrics [2025-09-29 13:28:15,652] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M11_metrics [2025-09-29 13:28:15,696] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M16_COMB_1.fq.gz [2025-09-29 13:28:15,702] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M16_COMB_2.fq.gz [2025-09-29 13:28:15,842] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-09-29 13:28:15,846] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-09-29 13:28:15,846] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-09-29 13:28:15,846] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-09-29 13:28:15,852] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-09-29 13:28:15,852] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-09-29 13:28:15,852] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-09-29 13:28:15,852] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-09-29 13:28:15,852] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-09-29 13:28:15,852] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-09-29 13:28:15,852] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-09-29 13:28:15,852] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-09-29 13:28:15,852] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-09-29 13:28:15,852] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-09-29 13:28:17,773] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M16_marked_dup_metrics.txt [2025-09-29 13:28:17,778] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M16_marked_dup_metrics.txt [2025-09-29 13:28:17,778] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M16_marked_dup_metrics.txt [2025-09-29 13:28:17,778] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M16_marked_dup_metrics.txt [2025-09-29 13:28:17,785] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M16_marked_dup_metrics.txt [2025-09-29 13:28:17,801] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M16_hist.pdf [2025-09-29 13:28:17,828] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M16_metrics [2025-09-29 13:28:17,831] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M16_metrics [2025-09-29 13:28:17,832] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M16_metrics [2025-09-29 13:28:17,832] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M16_metrics [2025-09-29 13:28:17,838] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M16_metrics [2025-09-29 13:28:17,947] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:17,951] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:17,952] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:17,952] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:17,958] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:17,958] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:17,958] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:17,958] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:17,958] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:17,958] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:17,958] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:17,958] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:17,978] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:18,916] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:18,919] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:18,919] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:18,919] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:18,924] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:18,924] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:18,924] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:18,924] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:18,924] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:18,924] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:18,924] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:18,924] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:18,943] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-09-29 13:28:19,843] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M16_metrics [2025-09-29 13:28:19,845] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M16_metrics [2025-09-29 13:28:19,849] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M16_metrics [2025-09-29 13:28:19,895] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M13_COMB_2.fq.gz [2025-09-29 13:28:19,902] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M13_COMB_1.fq.gz [2025-09-29 13:28:19,958] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-09-29 13:28:19,963] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-09-29 13:28:19,963] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-09-29 13:28:19,963] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-09-29 13:28:19,968] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-09-29 13:28:19,968] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-09-29 13:28:19,968] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-09-29 13:28:19,968] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-09-29 13:28:19,968] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-09-29 13:28:19,968] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-09-29 13:28:19,968] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-09-29 13:28:19,969] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-09-29 13:28:19,969] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-09-29 13:28:19,969] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-09-29 13:28:22,223] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M13_marked_dup_metrics.txt [2025-09-29 13:28:22,225] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M13_marked_dup_metrics.txt [2025-09-29 13:28:22,226] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M13_marked_dup_metrics.txt [2025-09-29 13:28:22,226] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M13_marked_dup_metrics.txt [2025-09-29 13:28:22,231] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M13_marked_dup_metrics.txt [2025-09-29 13:28:22,246] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M13_hist.pdf [2025-09-29 13:28:22,272] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M13_metrics [2025-09-29 13:28:22,275] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M13_metrics [2025-09-29 13:28:22,275] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M13_metrics [2025-09-29 13:28:22,275] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M13_metrics [2025-09-29 13:28:22,280] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M13_metrics [2025-09-29 13:28:22,361] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:22,365] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:22,366] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:22,366] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:22,372] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:22,372] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:22,372] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:22,372] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:22,372] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:22,372] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:22,372] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:22,372] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:22,391] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:23,322] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:23,325] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:23,325] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:23,325] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:23,330] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:23,330] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:23,330] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:23,330] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:23,330] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:23,330] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:23,330] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:23,330] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:23,349] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-09-29 13:28:24,260] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M13_metrics [2025-09-29 13:28:24,263] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M13_metrics [2025-09-29 13:28:24,268] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M13_metrics [2025-09-29 13:28:24,314] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M09A_COMB_2.fq.gz [2025-09-29 13:28:24,320] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M09A_COMB_1.fq.gz [2025-09-29 13:28:24,415] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-09-29 13:28:24,419] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-09-29 13:28:24,420] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-09-29 13:28:24,420] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-09-29 13:28:24,426] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-09-29 13:28:24,426] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-09-29 13:28:24,426] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-09-29 13:28:24,426] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-09-29 13:28:24,426] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-09-29 13:28:24,426] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-09-29 13:28:24,426] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-09-29 13:28:24,426] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-09-29 13:28:24,457] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-09-29 13:28:25,997] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M09A_marked_dup_metrics.txt [2025-09-29 13:28:26,000] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M09A_marked_dup_metrics.txt [2025-09-29 13:28:26,000] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M09A_marked_dup_metrics.txt [2025-09-29 13:28:26,000] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M09A_marked_dup_metrics.txt [2025-09-29 13:28:26,005] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M09A_marked_dup_metrics.txt [2025-09-29 13:28:26,017] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M09A_hist.pdf [2025-09-29 13:28:26,033] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M09A_metrics [2025-09-29 13:28:26,035] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M09A_metrics [2025-09-29 13:28:26,036] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M09A_metrics [2025-09-29 13:28:26,036] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M09A_metrics [2025-09-29 13:28:26,040] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M09A_metrics [2025-09-29 13:28:26,131] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:26,135] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:26,135] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:26,135] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:26,142] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:26,142] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:26,142] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:26,142] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:26,142] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:26,142] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:26,142] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:26,142] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:26,162] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:27,091] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:27,096] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:27,096] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:27,096] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:27,103] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:27,103] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:27,103] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:27,103] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:27,103] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:27,103] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:27,103] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:27,103] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:27,123] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-09-29 13:28:28,000] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M09A_metrics [2025-09-29 13:28:28,003] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M09A_metrics [2025-09-29 13:28:28,017] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M09A_metrics [2025-09-29 13:28:28,069] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M08_COMB_2.fq.gz [2025-09-29 13:28:28,075] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M08_COMB_1.fq.gz [2025-09-29 13:28:28,183] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-09-29 13:28:28,187] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-09-29 13:28:28,187] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-09-29 13:28:28,188] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-09-29 13:28:28,194] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-09-29 13:28:28,194] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-09-29 13:28:28,194] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-09-29 13:28:28,194] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-09-29 13:28:28,194] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-09-29 13:28:28,195] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-09-29 13:28:28,195] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-09-29 13:28:28,195] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-09-29 13:28:28,195] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-09-29 13:28:28,195] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-09-29 13:28:30,424] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M08_marked_dup_metrics.txt [2025-09-29 13:28:30,427] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M08_marked_dup_metrics.txt [2025-09-29 13:28:30,427] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M08_marked_dup_metrics.txt [2025-09-29 13:28:30,428] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M08_marked_dup_metrics.txt [2025-09-29 13:28:30,433] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M08_marked_dup_metrics.txt [2025-09-29 13:28:30,460] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M08_metrics [2025-09-29 13:28:30,462] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M08_metrics [2025-09-29 13:28:30,462] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M08_metrics [2025-09-29 13:28:30,463] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M08_metrics [2025-09-29 13:28:30,467] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M08_metrics [2025-09-29 13:28:30,526] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M08_hist.pdf [2025-09-29 13:28:30,557] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:30,561] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:30,561] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:30,562] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:30,568] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:30,568] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:30,568] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:30,568] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:30,568] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:30,568] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:30,568] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:30,568] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:30,587] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:31,502] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:31,506] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:31,507] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:31,507] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:31,513] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:31,514] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:31,514] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:31,514] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:31,514] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:31,514] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:31,514] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:31,514] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:31,534] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-09-29 13:28:32,444] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M08_metrics [2025-09-29 13:28:32,447] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M08_metrics [2025-09-29 13:28:32,451] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M08_metrics [2025-09-29 13:28:32,497] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M05_COMB_1.fq.gz [2025-09-29 13:28:32,503] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M05_COMB_2.fq.gz [2025-09-29 13:28:32,632] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-09-29 13:28:32,636] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-09-29 13:28:32,636] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-09-29 13:28:32,636] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-09-29 13:28:32,643] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-09-29 13:28:32,643] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-09-29 13:28:32,643] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-09-29 13:28:32,643] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-09-29 13:28:32,643] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-09-29 13:28:32,643] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-09-29 13:28:32,643] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-09-29 13:28:32,643] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-09-29 13:28:32,643] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-09-29 13:28:32,643] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-09-29 13:28:34,895] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M05_marked_dup_metrics.txt [2025-09-29 13:28:34,897] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M05_marked_dup_metrics.txt [2025-09-29 13:28:34,898] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M05_marked_dup_metrics.txt [2025-09-29 13:28:34,898] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M05_marked_dup_metrics.txt [2025-09-29 13:28:34,903] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M05_marked_dup_metrics.txt [2025-09-29 13:28:34,937] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M05_metrics [2025-09-29 13:28:34,939] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M05_metrics [2025-09-29 13:28:34,939] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M05_metrics [2025-09-29 13:28:34,939] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M05_metrics [2025-09-29 13:28:34,943] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M05_metrics [2025-09-29 13:28:35,000] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M05_hist.pdf [2025-09-29 13:28:35,041] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:35,045] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:35,045] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:35,045] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:35,051] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:35,051] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:35,051] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:35,051] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:35,051] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:35,051] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:35,051] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:35,051] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:35,069] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:36,003] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:36,007] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:36,007] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:36,007] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:36,014] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:36,014] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:36,014] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:36,014] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:36,014] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:36,014] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:36,014] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:36,014] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:36,034] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-09-29 13:28:36,914] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M05_metrics [2025-09-29 13:28:36,917] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M05_metrics [2025-09-29 13:28:36,922] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M05_metrics [2025-09-29 13:28:36,968] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M02_COMB_1.fq.gz [2025-09-29 13:28:36,974] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M02_COMB_2.fq.gz [2025-09-29 13:28:37,074] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-09-29 13:28:37,078] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-09-29 13:28:37,078] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-09-29 13:28:37,078] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-09-29 13:28:37,084] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-09-29 13:28:37,084] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-09-29 13:28:37,085] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-09-29 13:28:37,085] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-09-29 13:28:37,085] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-09-29 13:28:37,085] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-09-29 13:28:37,085] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-09-29 13:28:37,085] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-09-29 13:28:37,085] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-09-29 13:28:37,085] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-09-29 13:28:39,320] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M02_marked_dup_metrics.txt [2025-09-29 13:28:39,322] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M02_marked_dup_metrics.txt [2025-09-29 13:28:39,322] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M02_marked_dup_metrics.txt [2025-09-29 13:28:39,323] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M02_marked_dup_metrics.txt [2025-09-29 13:28:39,327] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M02_marked_dup_metrics.txt [2025-09-29 13:28:39,361] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M02_metrics [2025-09-29 13:28:39,364] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M02_metrics [2025-09-29 13:28:39,364] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M02_metrics [2025-09-29 13:28:39,364] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M02_metrics [2025-09-29 13:28:39,368] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M02_metrics [2025-09-29 13:28:39,421] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M02_hist.pdf [2025-09-29 13:28:39,444] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:39,446] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:39,446] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:39,446] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:39,450] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:39,450] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:39,450] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:39,450] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:39,450] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:39,450] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:39,451] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:39,451] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:39,468] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:40,393] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:40,396] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:40,396] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:40,396] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:40,400] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:40,400] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:40,400] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:40,400] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:40,401] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:40,401] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:40,401] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:40,401] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:40,419] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-09-29 13:28:41,312] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M02_metrics [2025-09-29 13:28:41,314] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M02_metrics [2025-09-29 13:28:41,318] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M02_metrics [2025-09-29 13:28:41,365] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M07_COMB_1.fq.gz [2025-09-29 13:28:41,372] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M07_COMB_2.fq.gz [2025-09-29 13:28:41,454] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-09-29 13:28:41,458] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-09-29 13:28:41,458] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-09-29 13:28:41,458] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-09-29 13:28:41,465] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-09-29 13:28:41,465] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-09-29 13:28:41,465] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-09-29 13:28:41,465] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-09-29 13:28:41,465] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-09-29 13:28:41,465] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-09-29 13:28:41,465] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-09-29 13:28:41,465] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-09-29 13:28:41,465] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-09-29 13:28:41,465] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-09-29 13:28:43,517] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M07_marked_dup_metrics.txt [2025-09-29 13:28:43,520] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M07_marked_dup_metrics.txt [2025-09-29 13:28:43,520] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M07_marked_dup_metrics.txt [2025-09-29 13:28:43,520] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M07_marked_dup_metrics.txt [2025-09-29 13:28:43,526] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M07_marked_dup_metrics.txt [2025-09-29 13:28:43,539] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M07_hist.pdf [2025-09-29 13:28:43,558] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M07_metrics [2025-09-29 13:28:43,561] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M07_metrics [2025-09-29 13:28:43,562] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M07_metrics [2025-09-29 13:28:43,562] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M07_metrics [2025-09-29 13:28:43,567] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M07_metrics [2025-09-29 13:28:43,677] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:43,681] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:43,681] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:43,682] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:43,687] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:43,687] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:43,687] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:43,687] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:43,687] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:43,687] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:43,687] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:43,687] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:43,708] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:44,627] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:44,630] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:44,630] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:44,630] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:44,637] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:44,637] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:44,637] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:44,637] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:44,637] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:44,637] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:44,637] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:44,637] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:44,657] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-09-29 13:28:45,544] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M07_metrics [2025-09-29 13:28:45,547] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M07_metrics [2025-09-29 13:28:45,573] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M07_metrics [2025-09-29 13:28:45,620] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M06A_COMB_2.fq.gz [2025-09-29 13:28:45,626] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M06A_COMB_1.fq.gz [2025-09-29 13:28:45,749] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-09-29 13:28:45,752] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-09-29 13:28:45,753] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-09-29 13:28:45,753] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-09-29 13:28:45,759] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-09-29 13:28:45,759] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-09-29 13:28:45,759] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-09-29 13:28:45,759] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-09-29 13:28:45,759] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-09-29 13:28:45,760] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-09-29 13:28:45,760] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-09-29 13:28:45,760] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-09-29 13:28:45,760] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-09-29 13:28:45,760] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-09-29 13:28:47,866] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M06A_marked_dup_metrics.txt [2025-09-29 13:28:47,869] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M06A_marked_dup_metrics.txt [2025-09-29 13:28:47,869] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M06A_marked_dup_metrics.txt [2025-09-29 13:28:47,869] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M06A_marked_dup_metrics.txt [2025-09-29 13:28:47,874] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M06A_marked_dup_metrics.txt [2025-09-29 13:28:47,887] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M06A_hist.pdf [2025-09-29 13:28:47,906] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M06A_metrics [2025-09-29 13:28:47,908] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M06A_metrics [2025-09-29 13:28:47,909] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M06A_metrics [2025-09-29 13:28:47,909] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M06A_metrics [2025-09-29 13:28:47,913] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M06A_metrics [2025-09-29 13:28:47,998] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,001] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,001] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,001] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,006] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,006] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,006] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,006] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,006] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,006] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,006] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,006] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,025] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,960] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,964] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,964] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,964] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,971] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,971] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,971] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,971] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,971] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,971] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,971] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,971] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:48,990] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-09-29 13:28:49,885] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M06A_metrics [2025-09-29 13:28:49,887] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M06A_metrics [2025-09-29 13:28:49,890] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M06A_metrics [2025-09-29 13:28:49,940] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M10_COMB_1.fq.gz [2025-09-29 13:28:49,946] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M10_COMB_2.fq.gz [2025-09-29 13:28:50,010] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-09-29 13:28:50,012] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-09-29 13:28:50,013] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-09-29 13:28:50,013] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-09-29 13:28:50,018] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-09-29 13:28:50,018] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-09-29 13:28:50,018] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-09-29 13:28:50,018] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-09-29 13:28:50,018] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-09-29 13:28:50,018] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-09-29 13:28:50,018] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-09-29 13:28:50,018] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-09-29 13:28:50,018] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-09-29 13:28:50,018] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-09-29 13:28:52,158] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M10_marked_dup_metrics.txt [2025-09-29 13:28:52,160] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M10_marked_dup_metrics.txt [2025-09-29 13:28:52,161] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M10_marked_dup_metrics.txt [2025-09-29 13:28:52,161] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M10_marked_dup_metrics.txt [2025-09-29 13:28:52,165] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M10_marked_dup_metrics.txt [2025-09-29 13:28:52,179] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M10_hist.pdf [2025-09-29 13:28:52,196] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M10_metrics [2025-09-29 13:28:52,198] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M10_metrics [2025-09-29 13:28:52,198] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M10_metrics [2025-09-29 13:28:52,198] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M10_metrics [2025-09-29 13:28:52,203] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M10_metrics [2025-09-29 13:28:52,295] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:52,298] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:52,298] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:52,298] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:52,303] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:52,304] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:52,304] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:52,304] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:52,304] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:52,304] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:52,304] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:52,304] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:52,322] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:53,236] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:53,240] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:53,240] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:53,241] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:53,247] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:53,248] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:53,248] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:53,248] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:53,248] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:53,248] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:53,248] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:53,249] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:53,274] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-09-29 13:28:54,162] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M10_metrics [2025-09-29 13:28:54,165] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M10_metrics [2025-09-29 13:28:54,168] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M10_metrics [2025-09-29 13:28:54,234] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M15_COMB_1.fq.gz [2025-09-29 13:28:54,240] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M15_COMB_2.fq.gz [2025-09-29 13:28:54,376] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-09-29 13:28:54,379] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-09-29 13:28:54,380] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-09-29 13:28:54,380] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-09-29 13:28:54,385] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-09-29 13:28:54,385] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-09-29 13:28:54,385] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-09-29 13:28:54,385] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-09-29 13:28:54,385] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-09-29 13:28:54,385] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-09-29 13:28:54,385] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-09-29 13:28:54,385] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-09-29 13:28:54,385] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-09-29 13:28:54,385] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-09-29 13:28:56,483] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M15_marked_dup_metrics.txt [2025-09-29 13:28:56,486] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M15_marked_dup_metrics.txt [2025-09-29 13:28:56,486] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M15_marked_dup_metrics.txt [2025-09-29 13:28:56,486] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M15_marked_dup_metrics.txt [2025-09-29 13:28:56,492] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M15_marked_dup_metrics.txt [2025-09-29 13:28:56,505] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M15_hist.pdf [2025-09-29 13:28:56,519] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M15_metrics [2025-09-29 13:28:56,521] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M15_metrics [2025-09-29 13:28:56,522] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M15_metrics [2025-09-29 13:28:56,522] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M15_metrics [2025-09-29 13:28:56,526] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M15_metrics [2025-09-29 13:28:56,617] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:56,620] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:56,621] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:56,621] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:56,627] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:56,627] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:56,627] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:56,627] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:56,627] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:56,627] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:56,627] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:56,627] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:56,646] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:57,565] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:57,568] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:57,584] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:57,584] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:57,591] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:57,591] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:57,591] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:57,592] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:57,592] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:57,592] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:57,592] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:57,592] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:57,616] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-09-29 13:28:58,487] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M15_metrics [2025-09-29 13:28:58,491] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M15_metrics [2025-09-29 13:28:58,498] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M15_metrics [2025-09-29 13:28:58,544] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M12_COMB_1.fq.gz [2025-09-29 13:28:58,551] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M12_COMB_2.fq.gz [2025-09-29 13:28:58,613] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-09-29 13:28:58,617] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-09-29 13:28:58,617] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-09-29 13:28:58,617] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-09-29 13:28:58,623] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-09-29 13:28:58,623] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-09-29 13:28:58,623] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-09-29 13:28:58,623] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-09-29 13:28:58,623] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-09-29 13:28:58,623] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-09-29 13:28:58,623] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-09-29 13:28:58,623] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-09-29 13:28:58,623] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-09-29 13:28:58,623] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-09-29 13:29:00,781] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M12_marked_dup_metrics.txt [2025-09-29 13:29:00,785] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M12_marked_dup_metrics.txt [2025-09-29 13:29:00,786] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M12_marked_dup_metrics.txt [2025-09-29 13:29:00,786] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M12_marked_dup_metrics.txt [2025-09-29 13:29:00,792] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M12_marked_dup_metrics.txt [2025-09-29 13:29:00,827] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M12_metrics [2025-09-29 13:29:00,829] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M12_metrics [2025-09-29 13:29:00,830] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M12_metrics [2025-09-29 13:29:00,830] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M12_metrics [2025-09-29 13:29:00,835] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M12_metrics [2025-09-29 13:29:00,896] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M12_hist.pdf [2025-09-29 13:29:00,941] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:00,944] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:00,944] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:00,944] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:00,949] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:00,949] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:00,949] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:00,950] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:00,950] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:00,950] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:00,950] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:00,950] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:00,968] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:01,896] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:01,900] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:01,901] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:01,901] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:01,906] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:01,906] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:01,906] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:01,906] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:01,906] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:01,906] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:01,906] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:01,906] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:01,925] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-09-29 13:29:02,827] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M12_metrics [2025-09-29 13:29:02,830] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M12_metrics [2025-09-29 13:29:02,847] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M12_metrics [2025-09-29 13:29:02,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M04_COMB_1.fq.gz [2025-09-29 13:29:02,905] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M04_COMB_2.fq.gz [2025-09-29 13:29:03,036] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-09-29 13:29:03,038] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-09-29 13:29:03,039] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-09-29 13:29:03,039] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-09-29 13:29:03,044] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-09-29 13:29:03,044] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-09-29 13:29:03,044] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-09-29 13:29:03,044] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-09-29 13:29:03,044] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-09-29 13:29:03,044] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-09-29 13:29:03,044] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-09-29 13:29:03,044] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-09-29 13:29:03,044] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-09-29 13:29:03,044] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-09-29 13:29:05,344] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M04_marked_dup_metrics.txt [2025-09-29 13:29:05,346] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M04_marked_dup_metrics.txt [2025-09-29 13:29:05,346] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M04_marked_dup_metrics.txt [2025-09-29 13:29:05,346] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M04_marked_dup_metrics.txt [2025-09-29 13:29:05,350] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M04_marked_dup_metrics.txt [2025-09-29 13:29:05,366] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M04_hist.pdf [2025-09-29 13:29:05,385] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M04_metrics [2025-09-29 13:29:05,389] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M04_metrics [2025-09-29 13:29:05,389] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M04_metrics [2025-09-29 13:29:05,390] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M04_metrics [2025-09-29 13:29:05,396] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M04_metrics [2025-09-29 13:29:05,480] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:05,482] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:05,483] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:05,483] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:05,488] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:05,488] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:05,488] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:05,488] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:05,488] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:05,488] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:05,488] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:05,488] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:05,506] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:06,438] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:06,442] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:06,442] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:06,443] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:06,449] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:06,449] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:06,449] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:06,449] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:06,449] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:06,449] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:06,449] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:06,449] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:06,470] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-09-29 13:29:07,379] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M04_metrics [2025-09-29 13:29:07,382] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M04_metrics [2025-09-29 13:29:07,386] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M04_metrics [2025-09-29 13:29:07,433] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M09_COMB_1.fq.gz [2025-09-29 13:29:07,439] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M09_COMB_2.fq.gz [2025-09-29 13:29:07,573] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-09-29 13:29:07,577] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-09-29 13:29:07,577] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-09-29 13:29:07,578] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-09-29 13:29:07,582] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-09-29 13:29:07,582] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-09-29 13:29:07,582] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-09-29 13:29:07,582] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-09-29 13:29:07,582] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-09-29 13:29:07,582] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-09-29 13:29:07,583] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-09-29 13:29:07,583] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-09-29 13:29:07,583] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-09-29 13:29:07,583] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-09-29 13:29:09,419] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M09_marked_dup_metrics.txt [2025-09-29 13:29:09,421] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M09_marked_dup_metrics.txt [2025-09-29 13:29:09,422] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M09_marked_dup_metrics.txt [2025-09-29 13:29:09,422] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M09_marked_dup_metrics.txt [2025-09-29 13:29:09,426] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M09_marked_dup_metrics.txt [2025-09-29 13:29:09,440] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M09_hist.pdf [2025-09-29 13:29:09,462] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M09_metrics [2025-09-29 13:29:09,465] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M09_metrics [2025-09-29 13:29:09,465] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M09_metrics [2025-09-29 13:29:09,465] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M09_metrics [2025-09-29 13:29:09,469] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M09_metrics [2025-09-29 13:29:09,555] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:09,557] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:09,558] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:09,558] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:09,562] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:09,563] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:09,563] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:09,563] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:09,563] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:09,563] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:09,563] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:09,563] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:09,582] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:10,526] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:10,529] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:10,529] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:10,529] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:10,535] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:10,535] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:10,535] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:10,535] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:10,535] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:10,535] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:10,535] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:10,535] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:10,553] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-09-29 13:29:11,635] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M09_metrics [2025-09-29 13:29:11,680] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M09_metrics [2025-09-29 13:29:11,743] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M09_metrics [2025-09-29 13:29:11,872] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M01_COMB_2.fq.gz [2025-09-29 13:29:11,880] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M01_COMB_1.fq.gz [2025-09-29 13:29:13,451] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-09-29 13:29:13,484] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-09-29 13:29:13,487] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-09-29 13:29:13,487] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-09-29 13:29:13,549] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-09-29 13:29:13,549] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-09-29 13:29:13,549] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-09-29 13:29:13,549] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-09-29 13:29:13,549] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-09-29 13:29:13,549] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-09-29 13:29:13,549] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-09-29 13:29:13,549] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-09-29 13:29:13,550] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-09-29 13:29:13,550] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-09-29 13:29:15,778] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M01_marked_dup_metrics.txt [2025-09-29 13:29:15,780] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M01_marked_dup_metrics.txt [2025-09-29 13:29:15,781] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M01_marked_dup_metrics.txt [2025-09-29 13:29:15,781] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M01_marked_dup_metrics.txt [2025-09-29 13:29:15,786] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M01_marked_dup_metrics.txt [2025-09-29 13:29:15,802] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M01_hist.pdf [2025-09-29 13:29:15,814] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M01_metrics [2025-09-29 13:29:15,817] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M01_metrics [2025-09-29 13:29:15,817] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M01_metrics [2025-09-29 13:29:15,817] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M01_metrics [2025-09-29 13:29:15,821] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M01_metrics [2025-09-29 13:29:15,916] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:15,919] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:15,919] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:15,920] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:15,924] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:15,924] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:15,924] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:15,924] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:15,924] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:15,924] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:15,924] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:15,924] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:15,943] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:16,865] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:16,869] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:16,870] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:16,870] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:16,875] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:16,875] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:16,875] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:16,875] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:16,875] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:16,875] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:16,875] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:16,875] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:16,894] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-09-29 13:29:17,773] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M01_metrics [2025-09-29 13:29:17,776] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M01_metrics [2025-09-29 13:29:17,781] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M01_metrics [2025-09-29 13:29:17,840] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M06_COMB_1.fq.gz [2025-09-29 13:29:17,847] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M06_COMB_2.fq.gz [2025-09-29 13:29:17,926] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-09-29 13:29:17,930] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-09-29 13:29:17,930] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-09-29 13:29:17,930] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-09-29 13:29:17,935] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-09-29 13:29:17,935] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-09-29 13:29:17,936] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-09-29 13:29:17,936] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-09-29 13:29:17,936] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-09-29 13:29:17,936] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-09-29 13:29:17,936] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-09-29 13:29:17,936] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-09-29 13:29:17,936] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-09-29 13:29:17,936] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-09-29 13:29:20,147] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M06_marked_dup_metrics.txt [2025-09-29 13:29:20,150] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M06_marked_dup_metrics.txt [2025-09-29 13:29:20,150] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M06_marked_dup_metrics.txt [2025-09-29 13:29:20,150] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M06_marked_dup_metrics.txt [2025-09-29 13:29:20,155] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M06_marked_dup_metrics.txt [2025-09-29 13:29:20,168] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M06_hist.pdf [2025-09-29 13:29:20,181] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M06_metrics [2025-09-29 13:29:20,183] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M06_metrics [2025-09-29 13:29:20,184] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M06_metrics [2025-09-29 13:29:20,184] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M06_metrics [2025-09-29 13:29:20,188] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M06_metrics [2025-09-29 13:29:20,272] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:20,274] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:20,275] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:20,275] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:20,280] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:20,280] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:20,280] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:20,280] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:20,280] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:20,280] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:20,280] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:20,280] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:20,299] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:21,225] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:21,229] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:21,229] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:21,229] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:21,234] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:21,234] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:21,234] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:21,235] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:21,235] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:21,235] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:21,235] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:21,235] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:21,254] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-09-29 13:29:22,159] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M06_metrics [2025-09-29 13:29:22,161] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M06_metrics [2025-09-29 13:29:22,165] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M06_metrics [2025-09-29 13:29:22,209] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M03_COMB_2.fq.gz [2025-09-29 13:29:22,215] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M03_COMB_1.fq.gz [2025-09-29 13:29:22,322] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-09-29 13:29:22,326] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-09-29 13:29:22,326] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-09-29 13:29:22,326] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-09-29 13:29:22,331] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-09-29 13:29:22,331] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-09-29 13:29:22,331] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-09-29 13:29:22,331] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-09-29 13:29:22,331] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-09-29 13:29:22,331] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-09-29 13:29:22,331] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-09-29 13:29:22,331] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-09-29 13:29:22,331] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-09-29 13:29:22,331] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-09-29 13:29:24,500] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M03_marked_dup_metrics.txt [2025-09-29 13:29:24,502] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M03_marked_dup_metrics.txt [2025-09-29 13:29:24,503] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M03_marked_dup_metrics.txt [2025-09-29 13:29:24,503] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M03_marked_dup_metrics.txt [2025-09-29 13:29:24,507] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M03_marked_dup_metrics.txt [2025-09-29 13:29:24,543] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M03_metrics [2025-09-29 13:29:24,547] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M03_metrics [2025-09-29 13:29:24,548] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M03_metrics [2025-09-29 13:29:24,548] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M03_metrics [2025-09-29 13:29:24,553] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M03_metrics [2025-09-29 13:29:24,608] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M03_hist.pdf [2025-09-29 13:29:24,633] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:24,636] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:24,637] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:24,637] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:24,642] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:24,642] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:24,642] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:24,642] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:24,642] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:24,642] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:24,642] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:24,642] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:24,660] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:25,593] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:25,597] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:25,598] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:25,598] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:25,604] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:25,604] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:25,604] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:25,604] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:25,604] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:25,604] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:25,604] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:25,604] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:25,623] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-09-29 13:29:26,533] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M03_metrics [2025-09-29 13:29:26,535] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M03_metrics [2025-09-29 13:29:26,555] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M03_metrics [2025-09-29 13:29:26,600] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M08A_COMB_1.fq.gz [2025-09-29 13:29:26,607] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M08A_COMB_2.fq.gz [2025-09-29 13:29:26,752] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-09-29 13:29:26,756] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-09-29 13:29:26,756] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-09-29 13:29:26,756] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-09-29 13:29:26,762] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-09-29 13:29:26,763] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-09-29 13:29:26,763] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-09-29 13:29:26,763] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-09-29 13:29:26,763] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-09-29 13:29:26,763] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-09-29 13:29:26,763] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-09-29 13:29:26,763] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-09-29 13:29:26,763] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-09-29 13:29:26,763] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-09-29 13:29:28,825] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M08A_marked_dup_metrics.txt [2025-09-29 13:29:28,828] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M08A_marked_dup_metrics.txt [2025-09-29 13:29:28,828] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M08A_marked_dup_metrics.txt [2025-09-29 13:29:28,828] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M08A_marked_dup_metrics.txt [2025-09-29 13:29:28,833] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M08A_marked_dup_metrics.txt [2025-09-29 13:29:28,845] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M08A_hist.pdf [2025-09-29 13:29:28,865] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M08A_metrics [2025-09-29 13:29:28,869] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M08A_metrics [2025-09-29 13:29:28,869] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M08A_metrics [2025-09-29 13:29:28,870] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M08A_metrics [2025-09-29 13:29:28,875] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M08A_metrics [2025-09-29 13:29:28,967] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:28,970] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:28,971] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:28,971] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:28,976] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:28,976] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:28,976] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:28,976] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:28,976] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:28,976] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:28,976] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:28,976] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:28,994] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:29,933] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:29,937] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:29,937] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:29,937] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:29,944] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:29,944] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:29,944] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:29,944] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:29,944] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:29,944] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:29,944] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:29,944] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:29,963] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-09-29 13:29:30,883] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M08A_metrics [2025-09-29 13:29:30,887] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M08A_metrics [2025-09-29 13:29:30,892] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M08A_metrics [2025-09-29 13:29:30,942] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-09-29 13:29:30,945] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-09-29 13:29:30,949] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-09-29 13:29:30,962] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-09-29 13:29:30,967] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-09-29 13:29:30,974] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-09-29 13:29:30,987] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2025-09-29 13:29:30,989] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2025-09-29 13:29:31,014] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2025-09-29 13:29:31,017] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2025-09-29 13:29:31,020] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2025-09-29 13:29:31,033] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2025-09-29 13:29:31,035] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2025-09-29 13:29:31,050] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M11.o9883734 [2025-09-29 13:29:31,053] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M11.o9883734 [2025-09-29 13:29:31,057] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M11.o9883734 [2025-09-29 13:29:31,076] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M03.o9883726 [2025-09-29 13:29:31,078] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M03.o9883726 [2025-09-29 13:29:31,082] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M03.o9883726 [2025-09-29 13:29:31,093] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M08A.o9883741 [2025-09-29 13:29:31,095] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M08A.o9883741 [2025-09-29 13:29:31,099] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M08A.o9883741 [2025-09-29 13:29:31,111] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M08.o9883731 [2025-09-29 13:29:31,113] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M08.o9883731 [2025-09-29 13:29:31,117] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M08.o9883731 [2025-09-29 13:29:31,128] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M02.o9883725 [2025-09-29 13:29:31,131] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M02.o9883725 [2025-09-29 13:29:31,135] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M02.o9883725 [2025-09-29 13:29:31,147] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M12.o9883735 [2025-09-29 13:29:31,149] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M12.o9883735 [2025-09-29 13:29:31,153] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M12.o9883735 [2025-09-29 13:29:31,164] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M14.o9883737 [2025-09-29 13:29:31,166] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M14.o9883737 [2025-09-29 13:29:31,170] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M14.o9883737 [2025-09-29 13:29:31,181] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M16.o9883739 [2025-09-29 13:29:31,184] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M16.o9883739 [2025-09-29 13:29:31,187] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M16.o9883739 [2025-09-29 13:29:31,199] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M10.o9883733 [2025-09-29 13:29:31,201] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M10.o9883733 [2025-09-29 13:29:31,205] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M10.o9883733 [2025-09-29 13:29:31,216] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M05.o9883728 [2025-09-29 13:29:31,218] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M05.o9883728 [2025-09-29 13:29:31,222] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M05.o9883728 [2025-09-29 13:29:31,233] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M09A.o9883742 [2025-09-29 13:29:31,236] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M09A.o9883742 [2025-09-29 13:29:31,240] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M09A.o9883742 [2025-09-29 13:29:31,251] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M09.o9883732 [2025-09-29 13:29:31,253] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M09.o9883732 [2025-09-29 13:29:31,257] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M09.o9883732 [2025-09-29 13:29:31,268] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M04.o9883727 [2025-09-29 13:29:31,270] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M04.o9883727 [2025-09-29 13:29:31,274] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M04.o9883727 [2025-09-29 13:29:31,285] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M06.o9883729 [2025-09-29 13:29:31,289] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M06.o9883729 [2025-09-29 13:29:31,297] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M06.o9883729 [2025-09-29 13:29:31,338] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M01.o9883724 [2025-09-29 13:29:31,341] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M01.o9883724 [2025-09-29 13:29:31,345] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M01.o9883724 [2025-09-29 13:29:31,357] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M15.o9883738 [2025-09-29 13:29:31,359] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M15.o9883738 [2025-09-29 13:29:31,362] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M15.o9883738 [2025-09-29 13:29:31,373] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M06A.o9883740 [2025-09-29 13:29:31,376] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M06A.o9883740 [2025-09-29 13:29:31,379] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M06A.o9883740 [2025-09-29 13:29:31,391] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M07.o9883730 [2025-09-29 13:29:31,393] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M07.o9883730 [2025-09-29 13:29:31,397] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M07.o9883730 [2025-09-29 13:29:31,408] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M13.o9883736 [2025-09-29 13:29:31,411] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M13.o9883736 [2025-09-29 13:29:31,414] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G247_RNASEQ_G247_M13.o9883736 [2025-09-29 13:29:31,457] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: number_of_unique_reads.csv [2025-09-29 13:29:31,460] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: number_of_unique_reads.csv [2025-09-29 13:29:31,531] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,548] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,551] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,567] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,608] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,608] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,608] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,608] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,608] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,608] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,608] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,608] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,610] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,760] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:31,764] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:31,764] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:31,764] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:31,769] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:31,769] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:31,913] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,928] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,931] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,931] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,967] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,967] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,967] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,967] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,967] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,967] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,967] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,967] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:31,969] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,128] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,144] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,147] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,147] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,184] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,184] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,184] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,184] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,184] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,184] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,184] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,184] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,186] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,334] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:32,337] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:32,338] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:32,338] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:32,342] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:32,342] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:32,487] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,503] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,506] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,506] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,542] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,542] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,542] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,542] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,542] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,542] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,542] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,542] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,544] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,687] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:32,690] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:32,690] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:32,691] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:32,695] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:32,695] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:32,813] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:32,816] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:32,816] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:32,816] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:32,822] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:32,822] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:32,978] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,993] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,996] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:32,996] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,030] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,030] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,030] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,030] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,030] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,030] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,030] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,030] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,032] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,162] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:33,165] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:33,165] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:33,165] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:33,169] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:33,169] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:33,305] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,320] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,323] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,323] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,358] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,359] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,359] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,359] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,359] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,359] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,359] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,359] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,361] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,508] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:33,511] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:33,511] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:33,512] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:33,518] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:33,518] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:33,691] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,708] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,711] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,711] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,748] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,748] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,748] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,748] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,748] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,748] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,748] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,748] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,750] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,912] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,928] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,931] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,931] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,966] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,966] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,966] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,966] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,966] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,966] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,966] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,966] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:33,968] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,115] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:34,119] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:34,120] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:34,120] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:34,127] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:34,127] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:34,265] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,281] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,284] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,284] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,319] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,319] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,319] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,319] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,319] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,319] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,319] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,319] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,321] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,456] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:34,459] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:34,459] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:34,459] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:34,464] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:34,465] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:34,590] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:34,593] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:34,593] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:34,593] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:34,599] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:34,599] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:34,737] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,753] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,756] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,756] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,792] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,792] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,792] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,792] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,792] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,792] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,792] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,792] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,794] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,953] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,970] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,973] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:34,973] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,008] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,008] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,008] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,008] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,008] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,008] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,008] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,008] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,010] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,192] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,210] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,214] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,214] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,254] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,254] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,254] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,254] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,254] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,254] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,254] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,254] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,256] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,438] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,453] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,456] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,456] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,492] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,492] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,492] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,492] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,492] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,492] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,492] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,492] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,494] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,631] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:35,635] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:35,635] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:35,635] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:35,640] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:35,640] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:35,774] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,790] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,793] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,793] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,829] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,829] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,829] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,829] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,829] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,829] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,829] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,829] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,831] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:35,986] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,002] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,005] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,005] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,041] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,041] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,041] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,041] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,041] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,041] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,041] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,041] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,043] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,202] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,217] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,220] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,221] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,256] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,256] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,256] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,256] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,256] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,256] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,256] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,256] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,258] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,402] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:36,404] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:36,405] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:36,405] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:36,409] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:36,409] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:36,550] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,565] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,568] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,584] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,623] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,623] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,623] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,623] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,623] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,623] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,623] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,623] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,625] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,787] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,803] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,806] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,806] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,841] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,842] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,842] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,842] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,842] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,842] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,842] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,842] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:36,844] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,015] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,030] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,033] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,033] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,069] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,069] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,069] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,069] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,069] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,069] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,069] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,069] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,071] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,234] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,250] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,253] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,253] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,289] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,289] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,289] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,289] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,289] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,289] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,289] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,289] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,291] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,475] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,492] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,495] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,496] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,533] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,533] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,533] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,533] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,533] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,533] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,533] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,533] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,535] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:37,674] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:37,677] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:37,677] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:37,677] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:37,681] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:37,681] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:37,811] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:37,814] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:37,815] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:37,815] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:37,821] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:37,821] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:38,002] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,021] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,024] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,024] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,062] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,063] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,063] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,063] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,063] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,063] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,063] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,063] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,065] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,237] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,254] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,257] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,257] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,295] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,295] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,296] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,296] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,296] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,296] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,296] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,296] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,298] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,447] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:38,450] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:38,450] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:38,450] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:38,455] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:38,455] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:38,581] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:38,584] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:38,585] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:38,585] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:38,590] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:38,590] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:38,740] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,756] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,759] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,759] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,795] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,795] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,795] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,796] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,796] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,796] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,796] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,796] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,798] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,971] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,987] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,991] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:38,991] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,029] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,029] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,029] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,029] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,029] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,029] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,029] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,029] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,031] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,206] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,221] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,224] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,224] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,261] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,261] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,261] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,261] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,261] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,261] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,261] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,261] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,263] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,400] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:39,403] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:39,403] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:39,403] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:39,408] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:39,408] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:39,554] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,571] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,577] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,577] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,620] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,620] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,620] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,620] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,620] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,620] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,620] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,620] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,622] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,822] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,839] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,842] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,842] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,879] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,880] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,880] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,880] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,880] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,880] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,880] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,880] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:39,882] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,042] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,058] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,061] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,061] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,097] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,097] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,097] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,097] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,097] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,097] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,097] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,097] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,099] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,287] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,303] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,306] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,306] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,343] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,343] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,343] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,343] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,343] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,343] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,343] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,343] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,345] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,507] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,524] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,527] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,527] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,562] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,562] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,562] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,563] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,563] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,563] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,563] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,563] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,565] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,727] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,743] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,746] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,746] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,782] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,782] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,782] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,782] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,782] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,782] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,782] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,782] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,784] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:40,928] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:40,932] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:40,932] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:40,932] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:40,937] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:40,937] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:41,086] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,102] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,105] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,105] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,143] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,143] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,143] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,143] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,143] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,143] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,143] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,143] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,145] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,294] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:41,297] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:41,297] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:41,297] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:41,302] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:41,302] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:41,417] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:41,421] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:41,421] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:41,421] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:41,426] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:41,426] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastp.html [2025-09-29 13:29:41,566] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,582] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,585] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,600] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,640] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,640] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,640] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,640] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,640] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,640] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,640] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,640] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,642] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,810] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,826] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,829] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,829] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,866] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,866] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,866] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,866] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,866] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,866] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,866] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,867] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:41,869] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,033] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,049] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,052] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,052] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,088] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,088] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,088] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,088] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,088] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,089] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,089] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,089] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,091] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,257] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,273] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,276] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,276] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,313] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,313] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,313] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,313] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,313] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,313] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,313] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,313] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,315] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,480] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,496] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,499] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,499] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,535] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,536] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,536] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,536] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,536] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,536] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,536] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,536] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,538] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: fastqc_report.html [2025-09-29 13:29:42,676] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-09-29 13:29:42,678] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-09-29 13:29:42,678] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-09-29 13:29:42,678] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-09-29 13:29:42,683] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-09-29 13:29:42,695] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2025-09-29 13:29:42,700] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2025-09-29 13:29:42,707] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2025-09-29 13:29:42,724] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-09-29 13:29:42,727] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-09-29 13:29:42,732] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-09-29 13:29:42,744] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2025-09-29 13:29:42,746] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2025-09-29 13:29:42,774] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M15.o9884251 [2025-09-29 13:29:42,776] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M15.o9884251 [2025-09-29 13:29:42,776] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M15.o9884251 [2025-09-29 13:29:42,776] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M15.o9884251 [2025-09-29 13:29:42,781] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M15.o9884251 [2025-09-29 13:29:42,821] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M06A.o9884254 [2025-09-29 13:29:42,825] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M06A.o9884254 [2025-09-29 13:29:42,826] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M06A.o9884254 [2025-09-29 13:29:42,826] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M06A.o9884254 [2025-09-29 13:29:42,834] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M06A.o9884254 [2025-09-29 13:29:42,867] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M03.o9884239 [2025-09-29 13:29:42,869] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M03.o9884239 [2025-09-29 13:29:42,870] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M03.o9884239 [2025-09-29 13:29:42,870] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M03.o9884239 [2025-09-29 13:29:42,874] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M03.o9884239 [2025-09-29 13:29:42,913] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M07.o9884243 [2025-09-29 13:29:42,916] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M07.o9884243 [2025-09-29 13:29:42,917] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M07.o9884243 [2025-09-29 13:29:42,917] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M07.o9884243 [2025-09-29 13:29:42,924] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M07.o9884243 [2025-09-29 13:29:42,961] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M05.o9884241 [2025-09-29 13:29:42,963] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M05.o9884241 [2025-09-29 13:29:42,964] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M05.o9884241 [2025-09-29 13:29:42,964] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M05.o9884241 [2025-09-29 13:29:42,969] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M05.o9884241 [2025-09-29 13:29:43,007] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M01.o9884237 [2025-09-29 13:29:43,010] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M01.o9884237 [2025-09-29 13:29:43,010] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M01.o9884237 [2025-09-29 13:29:43,010] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M01.o9884237 [2025-09-29 13:29:43,015] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M01.o9884237 [2025-09-29 13:29:43,047] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M09.o9884245 [2025-09-29 13:29:43,050] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M09.o9884245 [2025-09-29 13:29:43,050] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M09.o9884245 [2025-09-29 13:29:43,050] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M09.o9884245 [2025-09-29 13:29:43,055] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M09.o9884245 [2025-09-29 13:29:43,086] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M09A.o9884256 [2025-09-29 13:29:43,089] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M09A.o9884256 [2025-09-29 13:29:43,089] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M09A.o9884256 [2025-09-29 13:29:43,089] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M09A.o9884256 [2025-09-29 13:29:43,094] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M09A.o9884256 [2025-09-29 13:29:43,130] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M08A.o9884255 [2025-09-29 13:29:43,133] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M08A.o9884255 [2025-09-29 13:29:43,133] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M08A.o9884255 [2025-09-29 13:29:43,134] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M08A.o9884255 [2025-09-29 13:29:43,138] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M08A.o9884255 [2025-09-29 13:29:43,165] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M11.o9884247 [2025-09-29 13:29:43,167] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M11.o9884247 [2025-09-29 13:29:43,168] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M11.o9884247 [2025-09-29 13:29:43,168] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M11.o9884247 [2025-09-29 13:29:43,172] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M11.o9884247 [2025-09-29 13:29:43,201] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M08.o9884244 [2025-09-29 13:29:43,204] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M08.o9884244 [2025-09-29 13:29:43,204] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M08.o9884244 [2025-09-29 13:29:43,204] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M08.o9884244 [2025-09-29 13:29:43,208] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M08.o9884244 [2025-09-29 13:29:43,235] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M02.o9884238 [2025-09-29 13:29:43,239] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M02.o9884238 [2025-09-29 13:29:43,239] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M02.o9884238 [2025-09-29 13:29:43,239] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M02.o9884238 [2025-09-29 13:29:43,246] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M02.o9884238 [2025-09-29 13:29:43,276] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M04.o9884240 [2025-09-29 13:29:43,278] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M04.o9884240 [2025-09-29 13:29:43,278] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M04.o9884240 [2025-09-29 13:29:43,278] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M04.o9884240 [2025-09-29 13:29:43,283] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M04.o9884240 [2025-09-29 13:29:43,319] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M13.o9884249 [2025-09-29 13:29:43,322] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M13.o9884249 [2025-09-29 13:29:43,322] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M13.o9884249 [2025-09-29 13:29:43,322] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M13.o9884249 [2025-09-29 13:29:43,327] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M13.o9884249 [2025-09-29 13:29:43,359] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M14.o9884250 [2025-09-29 13:29:43,361] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M14.o9884250 [2025-09-29 13:29:43,361] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M14.o9884250 [2025-09-29 13:29:43,361] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M14.o9884250 [2025-09-29 13:29:43,366] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M14.o9884250 [2025-09-29 13:29:43,397] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M12.o9884248 [2025-09-29 13:29:43,400] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M12.o9884248 [2025-09-29 13:29:43,401] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M12.o9884248 [2025-09-29 13:29:43,401] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M12.o9884248 [2025-09-29 13:29:43,406] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M12.o9884248 [2025-09-29 13:29:43,429] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M16.o9884253 [2025-09-29 13:29:43,431] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M16.o9884253 [2025-09-29 13:29:43,431] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M16.o9884253 [2025-09-29 13:29:43,431] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M16.o9884253 [2025-09-29 13:29:43,436] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M16.o9884253 [2025-09-29 13:29:43,472] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M10.o9884246 [2025-09-29 13:29:43,475] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M10.o9884246 [2025-09-29 13:29:43,475] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M10.o9884246 [2025-09-29 13:29:43,475] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M10.o9884246 [2025-09-29 13:29:43,481] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M10.o9884246 [2025-09-29 13:29:43,517] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M06.o9884242 [2025-09-29 13:29:43,521] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M06.o9884242 [2025-09-29 13:29:43,521] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M06.o9884242 [2025-09-29 13:29:43,521] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M06.o9884242 [2025-09-29 13:29:43,528] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M06.o9884242 [2025-09-29 13:29:43,556] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2025-09-29 13:29:43,559] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2025-09-29 13:29:43,563] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2025-09-29 13:29:43,575] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2025-09-29 13:29:43,578] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2025-09-29 13:29:43,590] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2025-09-29 13:29:43,596] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2025-09-29 13:29:43,600] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2025-09-29 13:29:43,601] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2025-09-29 13:29:43,601] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2025-09-29 13:29:43,609] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2025-09-29 13:29:43,609] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2025-09-29 13:29:43,609] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2025-09-29 13:29:43,609] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2025-09-29 13:29:43,609] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2025-09-29 13:29:43,609] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2025-09-29 13:29:43,609] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2025-09-29 13:29:43,609] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2025-09-29 13:29:43,609] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2025-09-29 13:29:43,609] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2025-09-29 13:29:44,540] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-09-29 13:29:44,598] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-09-29 13:29:44,601] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-09-29 13:29:44,601] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-09-29 13:29:44,668] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-09-29 13:29:44,919] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-09-29 13:29:44,954] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-09-29 13:29:44,959] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-09-29 13:29:44,960] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-09-29 13:29:45,041] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-09-29 13:29:48,505] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2025-09-29 13:29:48,520] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2025-09-29 13:29:48,523] multiqc [DEBUG ] No samples found: custom_content [2025-09-29 13:29:48,546] multiqc [DEBUG ] No samples found: ccs [2025-09-29 13:29:48,564] multiqc [DEBUG ] No samples found: ngsderive [2025-09-29 13:29:48,592] multiqc [DEBUG ] No samples found: purple [2025-09-29 13:29:48,601] multiqc [DEBUG ] No samples found: conpair [2025-09-29 13:29:48,618] multiqc [DEBUG ] No samples found: lima [2025-09-29 13:29:48,638] multiqc [DEBUG ] No samples found: peddy [2025-09-29 13:29:48,667] multiqc [DEBUG ] No samples found: somalier [2025-09-29 13:29:48,691] multiqc [DEBUG ] No samples found: methylQA [2025-09-29 13:29:48,733] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2025-09-29 13:29:48,733] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2025-09-29 13:29:48,733] multiqc [DEBUG ] No samples found: mosdepth [2025-09-29 13:29:48,743] multiqc [DEBUG ] No samples found: phantompeakqualtools [2025-09-29 13:29:48,767] multiqc [DEBUG ] No samples found: qualimap [2025-09-29 13:29:48,803] multiqc [DEBUG ] No samples found: preseq [2025-09-29 13:29:48,829] multiqc [DEBUG ] No samples found: quast [2025-09-29 13:29:48,850] multiqc [DEBUG ] No samples found: qorts [2025-09-29 13:29:48,871] multiqc [DEBUG ] No samples found: rna_seqc [2025-09-29 13:29:48,890] multiqc [DEBUG ] No samples found: rockhopper [2025-09-29 13:29:48,908] multiqc [DEBUG ] No samples found: rsem [2025-09-29 13:29:48,979] multiqc.modules.rseqc.rseqc [INFO ] Found 18 infer_experiment reports [2025-09-29 13:29:48,998] multiqc [DEBUG ] No samples found: busco [2025-09-29 13:29:49,016] multiqc [DEBUG ] No samples found: bustools [2025-09-29 13:29:49,031] multiqc [DEBUG ] No samples found: goleft_indexcov [2025-09-29 13:29:49,053] multiqc [DEBUG ] No samples found: gffcompare [2025-09-29 13:29:49,068] multiqc [DEBUG ] No samples found: disambiguate [2025-09-29 13:29:49,078] multiqc [DEBUG ] No samples found: supernova [2025-09-29 13:29:49,146] multiqc [DEBUG ] No samples found: deeptools [2025-09-29 13:29:49,169] multiqc [DEBUG ] No samples found: sargasso [2025-09-29 13:29:49,187] multiqc [DEBUG ] No samples found: verifybamid [2025-09-29 13:29:49,208] multiqc [DEBUG ] No samples found: mirtrace [2025-09-29 13:29:49,222] multiqc [DEBUG ] No samples found: happy [2025-09-29 13:29:49,251] multiqc [DEBUG ] No samples found: mirtop [2025-09-29 13:29:49,277] multiqc [DEBUG ] No samples found: sambamba [2025-09-29 13:29:49,306] multiqc [DEBUG ] No samples found: homer [2025-09-29 13:29:49,348] multiqc [DEBUG ] No samples found: hops [2025-09-29 13:29:49,370] multiqc [DEBUG ] No samples found: macs2 [2025-09-29 13:29:49,381] multiqc [DEBUG ] No samples found: theta2 [2025-09-29 13:29:49,411] multiqc [DEBUG ] No samples found: snpeff [2025-09-29 13:29:49,452] multiqc [DEBUG ] No samples found: gatk [2025-09-29 13:29:49,462] multiqc [DEBUG ] No samples found: htseq [2025-09-29 13:29:49,488] multiqc [DEBUG ] No samples found: bcftools [2025-09-29 13:29:49,506] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M14_sorted [2025-09-29 13:29:49,508] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M11_sorted [2025-09-29 13:29:49,511] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M16_sorted [2025-09-29 13:29:49,514] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M13_sorted [2025-09-29 13:29:49,517] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M09A_sorted [2025-09-29 13:29:49,520] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M08_sorted [2025-09-29 13:29:49,523] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M05_sorted [2025-09-29 13:29:49,526] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M02_sorted [2025-09-29 13:29:49,529] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M07_sorted [2025-09-29 13:29:49,532] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M06A_sorted [2025-09-29 13:29:49,535] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M10_sorted [2025-09-29 13:29:49,538] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M15_sorted [2025-09-29 13:29:49,541] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M12_sorted [2025-09-29 13:29:49,544] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M04_sorted [2025-09-29 13:29:49,545] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M09_sorted [2025-09-29 13:29:49,546] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M01_sorted [2025-09-29 13:29:49,548] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M06_sorted [2025-09-29 13:29:49,549] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M03_sorted [2025-09-29 13:29:49,550] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M08A_sorted [2025-09-29 13:29:49,550] multiqc.modules.featureCounts.feature_counts [INFO ] Found 19 reports [2025-09-29 13:29:49,596] multiqc [DEBUG ] No samples found: fgbio [2025-09-29 13:29:49,686] multiqc [DEBUG ] No samples found: dragen [2025-09-29 13:29:49,715] multiqc [DEBUG ] No samples found: dedup [2025-09-29 13:29:49,736] multiqc [DEBUG ] No samples found: damageprofiler [2025-09-29 13:29:49,926] multiqc [DEBUG ] No samples found: biobambam2 [2025-09-29 13:29:49,948] multiqc [DEBUG ] No samples found: jcvi [2025-09-29 13:29:49,956] multiqc [DEBUG ] No samples found: mtnucratio [2025-09-29 13:29:50,787] multiqc.modules.picard.picard [INFO ] Found 19 InsertSizeMetrics reports [2025-09-29 13:29:50,806] multiqc.modules.picard.picard [INFO ] Found 19 MarkDuplicates reports [2025-09-29 13:29:50,845] multiqc.modules.picard.picard [INFO ] Found 19 RnaSeqMetrics reports [2025-09-29 13:29:50,863] multiqc [DEBUG ] No samples found: vep [2025-09-29 13:29:50,886] multiqc [DEBUG ] No samples found: sentieon [2025-09-29 13:29:50,911] multiqc [DEBUG ] No samples found: prokka [2025-09-29 13:29:50,939] multiqc [DEBUG ] No samples found: qc3C [2025-09-29 13:29:50,960] multiqc [DEBUG ] No samples found: nanostat [2025-09-29 13:29:50,969] multiqc [DEBUG ] No samples found: samblaster [2025-09-29 13:29:51,090] multiqc.modules.samtools.samtools [INFO ] Found 57 flagstat reports [2025-09-29 13:29:51,109] multiqc [DEBUG ] No samples found: sexdeterrmine [2025-09-29 13:29:51,119] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2025-09-29 13:29:51,128] multiqc [DEBUG ] No samples found: bamtools [2025-09-29 13:29:51,134] multiqc [DEBUG ] No samples found: jellyfish [2025-09-29 13:29:51,146] multiqc [DEBUG ] No samples found: vcftools [2025-09-29 13:29:51,164] multiqc [DEBUG ] No samples found: longranger [2025-09-29 13:29:51,190] multiqc [DEBUG ] No samples found: stacks [2025-09-29 13:29:51,209] multiqc [DEBUG ] No samples found: varscan2 [2025-09-29 13:29:51,233] multiqc [DEBUG ] No samples found: snippy [2025-09-29 13:29:51,281] multiqc [DEBUG ] No samples found: bbmap [2025-09-29 13:29:51,301] multiqc [DEBUG ] No samples found: bismark [2025-09-29 13:29:51,329] multiqc [DEBUG ] No samples found: biscuit [2025-09-29 13:29:51,350] multiqc [DEBUG ] No samples found: hicexplorer [2025-09-29 13:29:51,375] multiqc [DEBUG ] No samples found: hicup [2025-09-29 13:29:51,393] multiqc [DEBUG ] No samples found: hicpro [2025-09-29 13:29:51,401] multiqc [DEBUG ] No samples found: salmon [2025-09-29 13:29:51,418] multiqc [DEBUG ] No samples found: kallisto [2025-09-29 13:29:51,431] multiqc [DEBUG ] No samples found: slamdunk [2025-09-29 13:29:53,343] multiqc.modules.star.star [INFO ] Found 19 reports and 19 gene count files [2025-09-29 13:29:53,361] multiqc [DEBUG ] No samples found: hisat2 [2025-09-29 13:29:53,382] multiqc [DEBUG ] No samples found: tophat [2025-09-29 13:29:53,407] multiqc [DEBUG ] No samples found: bowtie2 [2025-09-29 13:29:53,427] multiqc [DEBUG ] No samples found: bowtie1 [2025-09-29 13:29:53,449] multiqc [DEBUG ] No samples found: snpsplit [2025-09-29 13:29:53,469] multiqc [DEBUG ] No samples found: odgi [2025-09-29 13:29:53,493] multiqc [DEBUG ] No samples found: pangolin [2025-09-29 13:29:53,503] multiqc [DEBUG ] No samples found: kat [2025-09-29 13:29:53,514] multiqc [DEBUG ] No samples found: leehom [2025-09-29 13:29:53,531] multiqc [DEBUG ] No samples found: adapterRemoval [2025-09-29 13:29:53,540] multiqc [DEBUG ] No samples found: clipandmerge [2025-09-29 13:29:53,549] multiqc [DEBUG ] No samples found: cutadapt [2025-09-29 13:29:53,555] multiqc [DEBUG ] No samples found: flexbar [2025-09-29 13:29:53,570] multiqc [DEBUG ] No samples found: kaiju [2025-09-29 13:29:53,585] multiqc [DEBUG ] No samples found: kraken [2025-09-29 13:29:53,597] multiqc [DEBUG ] No samples found: malt [2025-09-29 13:29:53,624] multiqc [DEBUG ] No samples found: trimmomatic [2025-09-29 13:29:53,637] multiqc [DEBUG ] No samples found: sickle [2025-09-29 13:29:53,662] multiqc [DEBUG ] No samples found: skewer [2025-09-29 13:29:53,672] multiqc [DEBUG ] No samples found: sortmerna [2025-09-29 13:29:53,680] multiqc [DEBUG ] No samples found: biobloomtools [2025-09-29 13:29:53,698] multiqc [DEBUG ] No samples found: fastq_screen [2025-09-29 13:29:53,723] multiqc [DEBUG ] No samples found: afterqc [2025-09-29 13:29:53,757] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-09-29 13:29:53,782] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-09-29 13:29:53,802] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-09-29 13:29:53,815] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-09-29 13:29:53,835] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-09-29 13:29:53,858] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-09-29 13:29:53,883] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-09-29 13:29:53,914] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-09-29 13:29:53,940] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-09-29 13:29:53,971] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-09-29 13:29:53,990] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-09-29 13:29:54,013] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-09-29 13:29:54,041] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-09-29 13:29:54,067] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-09-29 13:29:54,093] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-09-29 13:29:54,123] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-09-29 13:29:54,153] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-09-29 13:29:54,181] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-09-29 13:29:54,201] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-09-29 13:29:54,202] multiqc.modules.fastp.fastp [INFO ] Found 19 reports [2025-09-29 13:30:02,550] multiqc.modules.fastqc.fastqc [INFO ] Found 38 reports [2025-09-29 13:30:02,551] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2025-09-29 13:30:05,386] multiqc [DEBUG ] No samples found: pychopper [2025-09-29 13:30:05,408] multiqc [DEBUG ] No samples found: pycoqc [2025-09-29 13:30:05,433] multiqc [DEBUG ] No samples found: minionqc [2025-09-29 13:30:05,457] multiqc [DEBUG ] No samples found: multivcfanalyzer [2025-09-29 13:30:05,484] multiqc [DEBUG ] No samples found: clusterflow [2025-09-29 13:30:05,513] multiqc [DEBUG ] No samples found: bcl2fastq [2025-09-29 13:30:05,533] multiqc [DEBUG ] No samples found: bclconvert [2025-09-29 13:30:05,557] multiqc [DEBUG ] No samples found: interop [2025-09-29 13:30:05,582] multiqc [DEBUG ] No samples found: ivar [2025-09-29 13:30:05,601] multiqc [DEBUG ] No samples found: flash [2025-09-29 13:30:05,631] multiqc [DEBUG ] No samples found: seqyclean [2025-09-29 13:30:05,640] multiqc [DEBUG ] No samples found: optitype [2025-09-29 13:30:05,737] multiqc [INFO ] Compressing plot data [2025-09-29 13:30:07,692] multiqc [INFO ] Report : multiqc_report.html [2025-09-29 13:30:07,693] multiqc [INFO ] Data : multiqc_data [2025-09-29 13:30:07,693] multiqc [DEBUG ] Moving data file from '/scratch/tmp799hd08u/multiqc_data' to '/projectnb/wax-dk/max/G247_RNASEQ/Scripts/99_final_summary/G247_RNASEQ_woM11_multiqc_report/multiqc_data' [2025-09-29 13:30:08,334] multiqc [INFO ] MultiQC complete [2025-09-29 13:30:08,334] multiqc [WARNING] 1 flat-image plot used in the report due to large sample numbers