[2025-08-19 15:18:23,030] multiqc [DEBUG ] This is MultiQC v1.11 [2025-08-19 15:18:23,030] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2025-08-19 15:18:23,031] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2025-08-19 15:18:23,031] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2025-08-19 15:18:23,032] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/G247_RNASEQ/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2025-08-19 15:18:23,032] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2025-08-19 15:18:23,032] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2025-08-19 15:18:23,033] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G247_RNASEQ/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G247_RNASEQ/SAMPLES /projectnb2/wax-dk/max/G247_RNASEQ/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G247_RNASEQ/Scripts/06_CollectMetrics/ [2025-08-19 15:18:23,672] multiqc [WARNING] MultiQC Version v1.30 now available! [2025-08-19 15:18:23,673] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G247_RNASEQ/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G247_RNASEQ/SAMPLES /projectnb2/wax-dk/max/G247_RNASEQ/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G247_RNASEQ/Scripts/06_CollectMetrics/ [2025-08-19 15:18:23,673] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G247_RNASEQ/Scripts/99_final_summary/G247_RNASEQ_multiqc_report [2025-08-19 15:18:23,673] multiqc [DEBUG ] Template : default [2025-08-19 15:18:23,673] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2025-08-19 15:18:23,674] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2025-08-19 15:18:23,690] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpsr068tps [2025-08-19 15:18:23,769] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G247_RNASEQ/SAMPLES [2025-08-19 15:18:23,769] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G247_RNASEQ/Scripts/03_FASTQC [2025-08-19 15:18:23,769] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G247_RNASEQ/Scripts/06_CollectMetrics [2025-08-19 15:18:23,989] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M14_COMB_1.fq.gz [2025-08-19 15:18:23,990] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M14_COMB_2.fq.gz [2025-08-19 15:18:24,056] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-08-19 15:18:24,058] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-08-19 15:18:24,059] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-08-19 15:18:24,059] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-08-19 15:18:24,063] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-08-19 15:18:24,063] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-08-19 15:18:24,063] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-08-19 15:18:24,063] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-08-19 15:18:24,063] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-08-19 15:18:24,063] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-08-19 15:18:24,063] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-08-19 15:18:24,063] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-08-19 15:18:24,063] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-08-19 15:18:24,063] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M14_SJ.out.tab [2025-08-19 15:18:26,243] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M14_marked_dup_metrics.txt [2025-08-19 15:18:26,245] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M14_marked_dup_metrics.txt [2025-08-19 15:18:26,245] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M14_marked_dup_metrics.txt [2025-08-19 15:18:26,245] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M14_marked_dup_metrics.txt [2025-08-19 15:18:26,249] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M14_marked_dup_metrics.txt [2025-08-19 15:18:26,266] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M14_metrics [2025-08-19 15:18:26,270] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M14_metrics [2025-08-19 15:18:26,270] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M14_metrics [2025-08-19 15:18:26,271] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M14_metrics [2025-08-19 15:18:26,277] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M14_metrics [2025-08-19 15:18:26,344] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M14_hist.pdf [2025-08-19 15:18:26,365] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:26,367] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:26,367] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:26,367] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:26,371] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:26,371] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:26,371] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:26,371] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:26,371] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:26,371] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:26,371] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:26,371] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:26,389] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:27,321] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:27,325] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:27,341] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:27,341] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:27,348] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:27,348] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:27,348] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:27,348] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:27,348] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:27,348] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:27,348] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:27,348] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:27,371] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M14_featureCounts.out [2025-08-19 15:18:28,279] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M14_metrics [2025-08-19 15:18:28,282] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M14_metrics [2025-08-19 15:18:28,286] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M14_metrics [2025-08-19 15:18:28,331] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M11_COMB_2.fq.gz [2025-08-19 15:18:28,331] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M11_COMB_1.fq.gz [2025-08-19 15:18:28,360] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-08-19 15:18:28,363] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-08-19 15:18:28,363] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-08-19 15:18:28,363] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-08-19 15:18:28,368] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-08-19 15:18:28,368] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-08-19 15:18:28,368] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-08-19 15:18:28,368] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-08-19 15:18:28,368] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-08-19 15:18:28,368] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-08-19 15:18:28,368] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-08-19 15:18:28,369] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-08-19 15:18:28,369] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-08-19 15:18:28,369] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M11_SJ.out.tab [2025-08-19 15:18:30,400] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M11_marked_dup_metrics.txt [2025-08-19 15:18:30,402] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M11_marked_dup_metrics.txt [2025-08-19 15:18:30,402] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M11_marked_dup_metrics.txt [2025-08-19 15:18:30,402] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M11_marked_dup_metrics.txt [2025-08-19 15:18:30,406] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M11_marked_dup_metrics.txt [2025-08-19 15:18:30,421] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M11_metrics [2025-08-19 15:18:30,423] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M11_metrics [2025-08-19 15:18:30,423] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M11_metrics [2025-08-19 15:18:30,423] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M11_metrics [2025-08-19 15:18:30,431] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M11_metrics [2025-08-19 15:18:30,492] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M11_hist.pdf [2025-08-19 15:18:30,517] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:30,520] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:30,520] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:30,520] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:30,525] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:30,525] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:30,525] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:30,525] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:30,525] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:30,525] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:30,525] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:30,525] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:30,544] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:31,446] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:31,448] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:31,448] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:31,448] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:31,451] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:31,451] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:31,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:31,452] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:31,452] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:31,452] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:31,452] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:31,452] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:31,469] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M11_featureCounts.out [2025-08-19 15:18:32,373] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M11_metrics [2025-08-19 15:18:32,377] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M11_metrics [2025-08-19 15:18:32,397] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M11_metrics [2025-08-19 15:18:32,447] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M16_COMB_1.fq.gz [2025-08-19 15:18:32,447] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M16_COMB_2.fq.gz [2025-08-19 15:18:32,538] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-08-19 15:18:32,539] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-08-19 15:18:32,540] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-08-19 15:18:32,540] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-08-19 15:18:32,543] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-08-19 15:18:32,543] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-08-19 15:18:32,543] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-08-19 15:18:32,543] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-08-19 15:18:32,543] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-08-19 15:18:32,543] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-08-19 15:18:32,543] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-08-19 15:18:32,543] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-08-19 15:18:32,543] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-08-19 15:18:32,543] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M16_SJ.out.tab [2025-08-19 15:18:34,578] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M16_marked_dup_metrics.txt [2025-08-19 15:18:34,580] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M16_marked_dup_metrics.txt [2025-08-19 15:18:34,581] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M16_marked_dup_metrics.txt [2025-08-19 15:18:34,581] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M16_marked_dup_metrics.txt [2025-08-19 15:18:34,585] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M16_marked_dup_metrics.txt [2025-08-19 15:18:34,596] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M16_hist.pdf [2025-08-19 15:18:34,601] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M16_metrics [2025-08-19 15:18:34,603] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M16_metrics [2025-08-19 15:18:34,603] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M16_metrics [2025-08-19 15:18:34,603] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M16_metrics [2025-08-19 15:18:34,609] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M16_metrics [2025-08-19 15:18:34,702] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:34,704] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:34,704] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:34,704] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:34,709] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:34,709] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:34,709] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:34,709] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:34,709] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:34,709] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:34,709] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:34,709] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:34,729] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:35,652] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:35,654] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:35,654] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:35,654] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:35,659] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:35,659] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:35,659] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:35,659] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:35,659] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:35,659] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:35,659] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:35,659] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:35,678] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M16_featureCounts.out [2025-08-19 15:18:36,575] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M16_metrics [2025-08-19 15:18:36,578] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M16_metrics [2025-08-19 15:18:36,585] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M16_metrics [2025-08-19 15:18:36,634] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M13_COMB_2.fq.gz [2025-08-19 15:18:36,634] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M13_COMB_1.fq.gz [2025-08-19 15:18:36,657] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-08-19 15:18:36,660] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-08-19 15:18:36,660] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-08-19 15:18:36,660] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-08-19 15:18:36,664] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-08-19 15:18:36,664] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-08-19 15:18:36,664] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-08-19 15:18:36,664] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-08-19 15:18:36,664] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-08-19 15:18:36,664] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-08-19 15:18:36,664] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-08-19 15:18:36,664] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-08-19 15:18:36,664] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-08-19 15:18:36,664] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M13_SJ.out.tab [2025-08-19 15:18:39,035] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M13_marked_dup_metrics.txt [2025-08-19 15:18:39,038] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M13_marked_dup_metrics.txt [2025-08-19 15:18:39,038] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M13_marked_dup_metrics.txt [2025-08-19 15:18:39,038] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M13_marked_dup_metrics.txt [2025-08-19 15:18:39,042] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M13_marked_dup_metrics.txt [2025-08-19 15:18:39,062] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M13_hist.pdf [2025-08-19 15:18:39,067] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M13_metrics [2025-08-19 15:18:39,069] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M13_metrics [2025-08-19 15:18:39,069] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M13_metrics [2025-08-19 15:18:39,070] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M13_metrics [2025-08-19 15:18:39,074] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M13_metrics [2025-08-19 15:18:39,129] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:39,132] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:39,132] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:39,132] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:39,136] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:39,136] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:39,136] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:39,136] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:39,136] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:39,136] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:39,136] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:39,136] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:39,153] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:40,064] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:40,067] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:40,067] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:40,067] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:40,072] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:40,072] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:40,072] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:40,072] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:40,072] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:40,072] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:40,073] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:40,073] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:40,116] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M13_featureCounts.out [2025-08-19 15:18:41,020] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M13_metrics [2025-08-19 15:18:41,022] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M13_metrics [2025-08-19 15:18:41,027] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M13_metrics [2025-08-19 15:18:41,069] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M09A_COMB_2.fq.gz [2025-08-19 15:18:41,069] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M09A_COMB_1.fq.gz [2025-08-19 15:18:41,125] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-08-19 15:18:41,127] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-08-19 15:18:41,127] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-08-19 15:18:41,127] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-08-19 15:18:41,132] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-08-19 15:18:41,132] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-08-19 15:18:41,132] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-08-19 15:18:41,132] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-08-19 15:18:41,132] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-08-19 15:18:41,132] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-08-19 15:18:41,132] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-08-19 15:18:41,132] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-08-19 15:18:41,163] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M09A_SJ.out.tab [2025-08-19 15:18:42,809] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M09A_marked_dup_metrics.txt [2025-08-19 15:18:42,812] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M09A_marked_dup_metrics.txt [2025-08-19 15:18:42,813] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M09A_marked_dup_metrics.txt [2025-08-19 15:18:42,813] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M09A_marked_dup_metrics.txt [2025-08-19 15:18:42,817] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M09A_marked_dup_metrics.txt [2025-08-19 15:18:42,827] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M09A_hist.pdf [2025-08-19 15:18:42,832] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M09A_metrics [2025-08-19 15:18:42,834] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M09A_metrics [2025-08-19 15:18:42,834] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M09A_metrics [2025-08-19 15:18:42,834] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M09A_metrics [2025-08-19 15:18:42,838] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M09A_metrics [2025-08-19 15:18:42,910] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:42,913] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:42,914] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:42,914] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:42,918] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:42,918] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:42,918] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:42,918] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:42,918] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:42,918] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:42,918] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:42,918] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:42,934] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:43,840] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:43,843] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:43,843] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:43,843] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:43,847] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:43,847] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:43,847] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:43,848] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:43,848] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:43,848] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:43,848] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:43,848] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:43,865] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M09A_featureCounts.out [2025-08-19 15:18:44,777] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M09A_metrics [2025-08-19 15:18:44,779] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M09A_metrics [2025-08-19 15:18:44,783] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M09A_metrics [2025-08-19 15:18:44,829] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M08_COMB_2.fq.gz [2025-08-19 15:18:44,829] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M08_COMB_1.fq.gz [2025-08-19 15:18:44,901] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-08-19 15:18:44,903] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-08-19 15:18:44,903] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-08-19 15:18:44,903] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-08-19 15:18:44,907] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-08-19 15:18:44,907] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-08-19 15:18:44,907] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-08-19 15:18:44,907] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-08-19 15:18:44,907] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-08-19 15:18:44,907] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-08-19 15:18:44,907] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-08-19 15:18:44,907] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-08-19 15:18:44,907] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-08-19 15:18:44,907] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M08_SJ.out.tab [2025-08-19 15:18:47,414] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M08_marked_dup_metrics.txt [2025-08-19 15:18:47,416] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M08_marked_dup_metrics.txt [2025-08-19 15:18:47,416] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M08_marked_dup_metrics.txt [2025-08-19 15:18:47,416] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M08_marked_dup_metrics.txt [2025-08-19 15:18:47,420] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M08_marked_dup_metrics.txt [2025-08-19 15:18:47,437] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M08_metrics [2025-08-19 15:18:47,439] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M08_metrics [2025-08-19 15:18:47,439] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M08_metrics [2025-08-19 15:18:47,439] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M08_metrics [2025-08-19 15:18:47,445] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M08_metrics [2025-08-19 15:18:47,505] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M08_hist.pdf [2025-08-19 15:18:47,511] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:47,514] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:47,514] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:47,515] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:47,519] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:47,519] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:47,519] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:47,520] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:47,520] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:47,520] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:47,520] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:47,520] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:47,537] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:48,439] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:48,441] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:48,442] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:48,442] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:48,447] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:48,447] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:48,447] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:48,447] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:48,447] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:48,447] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:48,447] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:48,447] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:48,463] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M08_featureCounts.out [2025-08-19 15:18:49,365] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M08_metrics [2025-08-19 15:18:49,367] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M08_metrics [2025-08-19 15:18:49,389] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M08_metrics [2025-08-19 15:18:49,437] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M05_COMB_1.fq.gz [2025-08-19 15:18:49,437] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M05_COMB_2.fq.gz [2025-08-19 15:18:49,528] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-08-19 15:18:49,531] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-08-19 15:18:49,531] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-08-19 15:18:49,531] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-08-19 15:18:49,535] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-08-19 15:18:49,535] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-08-19 15:18:49,535] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-08-19 15:18:49,535] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-08-19 15:18:49,535] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-08-19 15:18:49,535] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-08-19 15:18:49,535] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-08-19 15:18:49,535] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-08-19 15:18:49,535] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-08-19 15:18:49,535] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M05_SJ.out.tab [2025-08-19 15:18:51,994] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M05_marked_dup_metrics.txt [2025-08-19 15:18:51,996] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M05_marked_dup_metrics.txt [2025-08-19 15:18:51,996] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M05_marked_dup_metrics.txt [2025-08-19 15:18:51,996] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M05_marked_dup_metrics.txt [2025-08-19 15:18:52,000] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M05_marked_dup_metrics.txt [2025-08-19 15:18:52,017] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M05_metrics [2025-08-19 15:18:52,020] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M05_metrics [2025-08-19 15:18:52,020] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M05_metrics [2025-08-19 15:18:52,020] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M05_metrics [2025-08-19 15:18:52,024] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M05_metrics [2025-08-19 15:18:52,088] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M05_hist.pdf [2025-08-19 15:18:52,114] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:52,116] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:52,116] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:52,116] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:52,121] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:52,121] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:52,121] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:52,121] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:52,121] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:52,121] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:52,121] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:52,121] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:52,140] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:53,057] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:53,059] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:53,060] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:53,060] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:53,064] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:53,064] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:53,064] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:53,064] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:53,064] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:53,064] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:53,064] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:53,064] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:53,081] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M05_featureCounts.out [2025-08-19 15:18:53,987] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M05_metrics [2025-08-19 15:18:53,989] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M05_metrics [2025-08-19 15:18:53,995] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M05_metrics [2025-08-19 15:18:54,043] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M02_COMB_1.fq.gz [2025-08-19 15:18:54,044] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M02_COMB_2.fq.gz [2025-08-19 15:18:54,090] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-08-19 15:18:54,092] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-08-19 15:18:54,092] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-08-19 15:18:54,092] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-08-19 15:18:54,097] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-08-19 15:18:54,097] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-08-19 15:18:54,097] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-08-19 15:18:54,097] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-08-19 15:18:54,097] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-08-19 15:18:54,098] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-08-19 15:18:54,098] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-08-19 15:18:54,098] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-08-19 15:18:54,098] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-08-19 15:18:54,098] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M02_SJ.out.tab [2025-08-19 15:18:56,464] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M02_marked_dup_metrics.txt [2025-08-19 15:18:56,466] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M02_marked_dup_metrics.txt [2025-08-19 15:18:56,466] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M02_marked_dup_metrics.txt [2025-08-19 15:18:56,466] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M02_marked_dup_metrics.txt [2025-08-19 15:18:56,470] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M02_marked_dup_metrics.txt [2025-08-19 15:18:56,488] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M02_metrics [2025-08-19 15:18:56,490] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M02_metrics [2025-08-19 15:18:56,490] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M02_metrics [2025-08-19 15:18:56,490] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M02_metrics [2025-08-19 15:18:56,494] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M02_metrics [2025-08-19 15:18:56,552] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M02_hist.pdf [2025-08-19 15:18:56,556] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:56,558] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:56,559] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:56,559] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:56,562] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:56,562] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:56,562] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:56,562] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:56,562] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:56,562] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:56,562] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:56,562] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:56,579] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:57,492] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:57,494] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:57,494] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:57,494] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:57,498] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:57,498] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:57,498] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:57,498] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:57,498] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:57,498] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:57,498] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:57,498] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:57,515] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M02_featureCounts.out [2025-08-19 15:18:58,430] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M02_metrics [2025-08-19 15:18:58,435] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M02_metrics [2025-08-19 15:18:58,442] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M02_metrics [2025-08-19 15:18:58,489] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M07_COMB_1.fq.gz [2025-08-19 15:18:58,489] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M07_COMB_2.fq.gz [2025-08-19 15:18:58,527] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-08-19 15:18:58,530] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-08-19 15:18:58,530] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-08-19 15:18:58,530] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-08-19 15:18:58,534] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-08-19 15:18:58,534] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-08-19 15:18:58,534] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-08-19 15:18:58,534] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-08-19 15:18:58,534] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-08-19 15:18:58,534] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-08-19 15:18:58,534] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-08-19 15:18:58,534] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-08-19 15:18:58,534] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-08-19 15:18:58,534] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M07_SJ.out.tab [2025-08-19 15:19:00,782] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M07_marked_dup_metrics.txt [2025-08-19 15:19:00,786] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M07_marked_dup_metrics.txt [2025-08-19 15:19:00,786] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M07_marked_dup_metrics.txt [2025-08-19 15:19:00,786] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M07_marked_dup_metrics.txt [2025-08-19 15:19:00,790] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M07_marked_dup_metrics.txt [2025-08-19 15:19:00,802] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M07_hist.pdf [2025-08-19 15:19:00,806] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M07_metrics [2025-08-19 15:19:00,809] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M07_metrics [2025-08-19 15:19:00,809] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M07_metrics [2025-08-19 15:19:00,809] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M07_metrics [2025-08-19 15:19:00,813] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M07_metrics [2025-08-19 15:19:00,916] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:00,920] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:00,921] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:00,921] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:00,928] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:00,928] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:00,928] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:00,928] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:00,928] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:00,928] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:00,928] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:00,928] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:00,949] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:01,868] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:01,870] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:01,870] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:01,870] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:01,875] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:01,875] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:01,875] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:01,875] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:01,875] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:01,875] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:01,875] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:01,875] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:01,893] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M07_featureCounts.out [2025-08-19 15:19:02,789] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M07_metrics [2025-08-19 15:19:02,791] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M07_metrics [2025-08-19 15:19:02,795] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M07_metrics [2025-08-19 15:19:02,845] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M06A_COMB_2.fq.gz [2025-08-19 15:19:02,845] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M06A_COMB_1.fq.gz [2025-08-19 15:19:02,942] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-08-19 15:19:02,944] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-08-19 15:19:02,945] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-08-19 15:19:02,945] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-08-19 15:19:02,952] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-08-19 15:19:02,952] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-08-19 15:19:02,952] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-08-19 15:19:02,952] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-08-19 15:19:02,952] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-08-19 15:19:02,953] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-08-19 15:19:02,953] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-08-19 15:19:02,953] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-08-19 15:19:02,953] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-08-19 15:19:02,953] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M06A_SJ.out.tab [2025-08-19 15:19:05,253] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M06A_marked_dup_metrics.txt [2025-08-19 15:19:05,256] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M06A_marked_dup_metrics.txt [2025-08-19 15:19:05,256] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M06A_marked_dup_metrics.txt [2025-08-19 15:19:05,256] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M06A_marked_dup_metrics.txt [2025-08-19 15:19:05,260] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M06A_marked_dup_metrics.txt [2025-08-19 15:19:05,274] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M06A_hist.pdf [2025-08-19 15:19:05,281] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M06A_metrics [2025-08-19 15:19:05,284] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M06A_metrics [2025-08-19 15:19:05,284] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M06A_metrics [2025-08-19 15:19:05,284] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M06A_metrics [2025-08-19 15:19:05,289] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M06A_metrics [2025-08-19 15:19:05,349] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:05,353] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:05,354] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:05,354] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:05,359] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:05,359] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:05,359] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:05,359] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:05,360] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:05,360] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:05,360] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:05,360] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:05,379] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:06,305] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:06,308] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:06,308] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:06,308] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:06,313] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:06,313] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:06,313] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:06,313] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:06,313] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:06,313] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:06,313] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:06,313] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:06,330] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M06A_featureCounts.out [2025-08-19 15:19:07,241] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M06A_metrics [2025-08-19 15:19:07,244] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M06A_metrics [2025-08-19 15:19:07,261] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M06A_metrics [2025-08-19 15:19:07,296] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M10_COMB_1.fq.gz [2025-08-19 15:19:07,296] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M10_COMB_2.fq.gz [2025-08-19 15:19:07,344] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-08-19 15:19:07,346] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-08-19 15:19:07,347] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-08-19 15:19:07,347] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-08-19 15:19:07,351] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-08-19 15:19:07,351] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-08-19 15:19:07,351] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-08-19 15:19:07,351] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-08-19 15:19:07,351] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-08-19 15:19:07,351] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-08-19 15:19:07,351] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-08-19 15:19:07,351] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-08-19 15:19:07,351] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-08-19 15:19:07,352] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M10_SJ.out.tab [2025-08-19 15:19:09,655] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M10_marked_dup_metrics.txt [2025-08-19 15:19:09,658] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M10_marked_dup_metrics.txt [2025-08-19 15:19:09,658] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M10_marked_dup_metrics.txt [2025-08-19 15:19:09,658] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M10_marked_dup_metrics.txt [2025-08-19 15:19:09,663] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M10_marked_dup_metrics.txt [2025-08-19 15:19:09,676] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M10_hist.pdf [2025-08-19 15:19:09,682] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M10_metrics [2025-08-19 15:19:09,685] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M10_metrics [2025-08-19 15:19:09,685] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M10_metrics [2025-08-19 15:19:09,685] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M10_metrics [2025-08-19 15:19:09,689] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M10_metrics [2025-08-19 15:19:09,771] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:09,774] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:09,774] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:09,774] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:09,779] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:09,779] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:09,779] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:09,779] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:09,779] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:09,779] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:09,779] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:09,779] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:09,797] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:10,707] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:10,709] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:10,710] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:10,710] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:10,714] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:10,714] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:10,714] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:10,714] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:10,714] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:10,714] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:10,714] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:10,714] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:10,731] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M10_featureCounts.out [2025-08-19 15:19:11,616] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M10_metrics [2025-08-19 15:19:11,618] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M10_metrics [2025-08-19 15:19:11,622] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M10_metrics [2025-08-19 15:19:11,659] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M15_COMB_1.fq.gz [2025-08-19 15:19:11,659] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M15_COMB_2.fq.gz [2025-08-19 15:19:11,755] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-08-19 15:19:11,758] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-08-19 15:19:11,759] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-08-19 15:19:11,759] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-08-19 15:19:11,762] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-08-19 15:19:11,762] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-08-19 15:19:11,762] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-08-19 15:19:11,762] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-08-19 15:19:11,762] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-08-19 15:19:11,762] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-08-19 15:19:11,762] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-08-19 15:19:11,762] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-08-19 15:19:11,762] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-08-19 15:19:11,762] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M15_SJ.out.tab [2025-08-19 15:19:13,950] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M15_marked_dup_metrics.txt [2025-08-19 15:19:13,952] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M15_marked_dup_metrics.txt [2025-08-19 15:19:13,952] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M15_marked_dup_metrics.txt [2025-08-19 15:19:13,952] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M15_marked_dup_metrics.txt [2025-08-19 15:19:13,956] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M15_marked_dup_metrics.txt [2025-08-19 15:19:13,968] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M15_hist.pdf [2025-08-19 15:19:13,974] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M15_metrics [2025-08-19 15:19:13,976] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M15_metrics [2025-08-19 15:19:13,976] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M15_metrics [2025-08-19 15:19:13,976] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M15_metrics [2025-08-19 15:19:13,982] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M15_metrics [2025-08-19 15:19:14,065] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:14,067] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:14,068] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:14,068] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:14,073] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:14,073] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:14,073] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:14,073] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:14,073] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:14,073] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:14,073] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:14,073] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:14,091] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:15,060] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:15,064] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:15,064] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:15,065] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:15,072] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:15,072] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:15,072] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:15,072] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:15,072] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:15,072] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:15,072] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:15,072] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:15,096] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M15_featureCounts.out [2025-08-19 15:19:15,995] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M15_metrics [2025-08-19 15:19:15,998] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M15_metrics [2025-08-19 15:19:16,003] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M15_metrics [2025-08-19 15:19:16,055] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M12_COMB_1.fq.gz [2025-08-19 15:19:16,055] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M12_COMB_2.fq.gz [2025-08-19 15:19:16,080] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-08-19 15:19:16,082] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-08-19 15:19:16,083] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-08-19 15:19:16,083] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-08-19 15:19:16,088] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-08-19 15:19:16,088] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-08-19 15:19:16,088] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-08-19 15:19:16,088] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-08-19 15:19:16,088] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-08-19 15:19:16,088] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-08-19 15:19:16,088] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-08-19 15:19:16,088] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-08-19 15:19:16,088] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-08-19 15:19:16,088] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M12_SJ.out.tab [2025-08-19 15:19:18,516] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M12_marked_dup_metrics.txt [2025-08-19 15:19:18,518] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M12_marked_dup_metrics.txt [2025-08-19 15:19:18,519] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M12_marked_dup_metrics.txt [2025-08-19 15:19:18,519] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M12_marked_dup_metrics.txt [2025-08-19 15:19:18,526] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M12_marked_dup_metrics.txt [2025-08-19 15:19:18,549] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M12_metrics [2025-08-19 15:19:18,552] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M12_metrics [2025-08-19 15:19:18,552] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M12_metrics [2025-08-19 15:19:18,552] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M12_metrics [2025-08-19 15:19:18,560] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M12_metrics [2025-08-19 15:19:18,625] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M12_hist.pdf [2025-08-19 15:19:18,650] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:18,652] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:18,653] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:18,653] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:18,659] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:18,659] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:18,659] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:18,659] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:18,659] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:18,659] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:18,659] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:18,659] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:18,677] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:19,626] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:19,628] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:19,640] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:19,641] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:19,648] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:19,648] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:19,648] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:19,648] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:19,648] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:19,648] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:19,649] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:19,649] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:19,669] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M12_featureCounts.out [2025-08-19 15:19:20,554] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M12_metrics [2025-08-19 15:19:20,556] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M12_metrics [2025-08-19 15:19:20,560] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M12_metrics [2025-08-19 15:19:20,615] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M04_COMB_1.fq.gz [2025-08-19 15:19:20,618] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M04_COMB_2.fq.gz [2025-08-19 15:19:20,729] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-08-19 15:19:20,733] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-08-19 15:19:20,733] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-08-19 15:19:20,733] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-08-19 15:19:20,737] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-08-19 15:19:20,737] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-08-19 15:19:20,737] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-08-19 15:19:20,738] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-08-19 15:19:20,738] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-08-19 15:19:20,738] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-08-19 15:19:20,738] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-08-19 15:19:20,738] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-08-19 15:19:20,738] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-08-19 15:19:20,738] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M04_SJ.out.tab [2025-08-19 15:19:23,241] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M04_marked_dup_metrics.txt [2025-08-19 15:19:23,244] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M04_marked_dup_metrics.txt [2025-08-19 15:19:23,245] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M04_marked_dup_metrics.txt [2025-08-19 15:19:23,245] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M04_marked_dup_metrics.txt [2025-08-19 15:19:23,252] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M04_marked_dup_metrics.txt [2025-08-19 15:19:23,279] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M04_hist.pdf [2025-08-19 15:19:23,286] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M04_metrics [2025-08-19 15:19:23,290] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M04_metrics [2025-08-19 15:19:23,290] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M04_metrics [2025-08-19 15:19:23,290] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M04_metrics [2025-08-19 15:19:23,298] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M04_metrics [2025-08-19 15:19:23,375] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:23,379] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:23,380] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:23,380] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:23,385] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:23,385] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:23,385] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:23,385] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:23,385] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:23,385] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:23,385] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:23,385] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:23,405] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:24,338] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:24,341] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:24,341] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:24,341] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:24,344] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:24,344] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:24,344] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:24,345] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:24,345] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:24,345] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:24,345] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:24,345] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:24,361] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M04_featureCounts.out [2025-08-19 15:19:25,261] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M04_metrics [2025-08-19 15:19:25,263] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M04_metrics [2025-08-19 15:19:25,267] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M04_metrics [2025-08-19 15:19:25,310] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M09_COMB_1.fq.gz [2025-08-19 15:19:25,313] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M09_COMB_2.fq.gz [2025-08-19 15:19:25,412] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-08-19 15:19:25,414] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-08-19 15:19:25,414] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-08-19 15:19:25,414] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-08-19 15:19:25,417] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-08-19 15:19:25,417] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-08-19 15:19:25,417] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-08-19 15:19:25,417] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-08-19 15:19:25,417] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-08-19 15:19:25,418] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-08-19 15:19:25,418] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-08-19 15:19:25,418] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-08-19 15:19:25,418] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-08-19 15:19:25,418] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M09_SJ.out.tab [2025-08-19 15:19:27,299] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M09_marked_dup_metrics.txt [2025-08-19 15:19:27,301] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M09_marked_dup_metrics.txt [2025-08-19 15:19:27,301] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M09_marked_dup_metrics.txt [2025-08-19 15:19:27,301] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M09_marked_dup_metrics.txt [2025-08-19 15:19:27,305] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M09_marked_dup_metrics.txt [2025-08-19 15:19:27,318] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M09_hist.pdf [2025-08-19 15:19:27,323] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M09_metrics [2025-08-19 15:19:27,326] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M09_metrics [2025-08-19 15:19:27,326] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M09_metrics [2025-08-19 15:19:27,326] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M09_metrics [2025-08-19 15:19:27,330] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M09_metrics [2025-08-19 15:19:27,409] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:27,412] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:27,412] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:27,412] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:27,418] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:27,418] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:27,419] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:27,419] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:27,419] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:27,419] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:27,419] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:27,419] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:27,443] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:28,352] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:28,355] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:28,355] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:28,355] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:28,359] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:28,359] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:28,359] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:28,359] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:28,359] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:28,359] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:28,359] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:28,359] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:28,377] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M09_featureCounts.out [2025-08-19 15:19:29,253] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M09_metrics [2025-08-19 15:19:29,257] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M09_metrics [2025-08-19 15:19:29,262] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M09_metrics [2025-08-19 15:19:29,276] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M01_COMB_2.fq.gz [2025-08-19 15:19:29,279] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M01_COMB_1.fq.gz [2025-08-19 15:19:29,368] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-08-19 15:19:29,370] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-08-19 15:19:29,370] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-08-19 15:19:29,370] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-08-19 15:19:29,374] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-08-19 15:19:29,374] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-08-19 15:19:29,374] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-08-19 15:19:29,374] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-08-19 15:19:29,374] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-08-19 15:19:29,374] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-08-19 15:19:29,374] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-08-19 15:19:29,374] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-08-19 15:19:29,374] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-08-19 15:19:29,374] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M01_SJ.out.tab [2025-08-19 15:19:31,525] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M01_marked_dup_metrics.txt [2025-08-19 15:19:31,527] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M01_marked_dup_metrics.txt [2025-08-19 15:19:31,528] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M01_marked_dup_metrics.txt [2025-08-19 15:19:31,528] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M01_marked_dup_metrics.txt [2025-08-19 15:19:31,532] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M01_marked_dup_metrics.txt [2025-08-19 15:19:31,546] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M01_hist.pdf [2025-08-19 15:19:31,552] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M01_metrics [2025-08-19 15:19:31,554] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M01_metrics [2025-08-19 15:19:31,555] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M01_metrics [2025-08-19 15:19:31,555] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M01_metrics [2025-08-19 15:19:31,560] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M01_metrics [2025-08-19 15:19:31,643] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:31,647] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:31,647] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:31,648] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:31,654] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:31,654] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:31,654] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:31,654] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:31,654] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:31,655] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:31,655] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:31,655] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:31,676] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:32,571] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:32,572] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:32,573] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:32,573] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:32,576] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:32,576] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:32,576] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:32,576] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:32,576] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:32,576] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:32,576] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:32,576] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:32,594] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M01_featureCounts.out [2025-08-19 15:19:33,468] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M01_metrics [2025-08-19 15:19:33,472] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M01_metrics [2025-08-19 15:19:33,476] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M01_metrics [2025-08-19 15:19:33,530] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M06_COMB_1.fq.gz [2025-08-19 15:19:33,533] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M06_COMB_2.fq.gz [2025-08-19 15:19:33,580] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-08-19 15:19:33,583] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-08-19 15:19:33,583] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-08-19 15:19:33,583] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-08-19 15:19:33,588] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-08-19 15:19:33,588] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-08-19 15:19:33,588] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-08-19 15:19:33,588] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-08-19 15:19:33,588] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-08-19 15:19:33,588] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-08-19 15:19:33,588] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-08-19 15:19:33,588] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-08-19 15:19:33,588] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-08-19 15:19:33,588] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M06_SJ.out.tab [2025-08-19 15:19:35,887] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M06_marked_dup_metrics.txt [2025-08-19 15:19:35,890] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M06_marked_dup_metrics.txt [2025-08-19 15:19:35,890] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M06_marked_dup_metrics.txt [2025-08-19 15:19:35,890] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M06_marked_dup_metrics.txt [2025-08-19 15:19:35,895] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M06_marked_dup_metrics.txt [2025-08-19 15:19:35,907] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M06_hist.pdf [2025-08-19 15:19:35,912] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M06_metrics [2025-08-19 15:19:35,914] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M06_metrics [2025-08-19 15:19:35,914] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M06_metrics [2025-08-19 15:19:35,914] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M06_metrics [2025-08-19 15:19:35,918] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M06_metrics [2025-08-19 15:19:35,985] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:35,987] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:35,988] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:35,988] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:35,992] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:35,992] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:35,992] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:35,992] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:35,992] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:35,992] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:35,992] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:35,992] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:36,009] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:36,913] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:36,916] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:36,932] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:36,932] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:36,939] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:36,939] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:36,939] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:36,939] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:36,940] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:36,940] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:36,940] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:36,940] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:36,963] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M06_featureCounts.out [2025-08-19 15:19:37,874] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M06_metrics [2025-08-19 15:19:37,878] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M06_metrics [2025-08-19 15:19:37,882] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M06_metrics [2025-08-19 15:19:37,930] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M03_COMB_2.fq.gz [2025-08-19 15:19:37,933] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M03_COMB_1.fq.gz [2025-08-19 15:19:38,015] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-08-19 15:19:38,018] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-08-19 15:19:38,018] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-08-19 15:19:38,018] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-08-19 15:19:38,025] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-08-19 15:19:38,025] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-08-19 15:19:38,026] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-08-19 15:19:38,026] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-08-19 15:19:38,026] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-08-19 15:19:38,026] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-08-19 15:19:38,026] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-08-19 15:19:38,026] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-08-19 15:19:38,026] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-08-19 15:19:38,026] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M03_SJ.out.tab [2025-08-19 15:19:40,313] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M03_marked_dup_metrics.txt [2025-08-19 15:19:40,315] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M03_marked_dup_metrics.txt [2025-08-19 15:19:40,316] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M03_marked_dup_metrics.txt [2025-08-19 15:19:40,316] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M03_marked_dup_metrics.txt [2025-08-19 15:19:40,320] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M03_marked_dup_metrics.txt [2025-08-19 15:19:40,338] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M03_metrics [2025-08-19 15:19:40,341] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M03_metrics [2025-08-19 15:19:40,342] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M03_metrics [2025-08-19 15:19:40,342] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M03_metrics [2025-08-19 15:19:40,346] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M03_metrics [2025-08-19 15:19:40,400] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M03_hist.pdf [2025-08-19 15:19:40,407] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:40,410] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:40,411] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:40,411] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:40,415] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:40,416] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:40,416] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:40,416] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:40,416] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:40,416] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:40,416] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:40,416] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:40,433] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:41,331] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:41,333] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:41,333] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:41,333] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:41,337] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:41,337] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:41,338] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:41,338] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:41,338] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:41,338] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:41,338] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:41,338] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:41,354] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M03_featureCounts.out [2025-08-19 15:19:42,258] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M03_metrics [2025-08-19 15:19:42,261] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M03_metrics [2025-08-19 15:19:42,281] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M03_metrics [2025-08-19 15:19:42,330] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M08A_COMB_1.fq.gz [2025-08-19 15:19:42,333] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M08A_COMB_2.fq.gz [2025-08-19 15:19:42,431] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-08-19 15:19:42,434] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-08-19 15:19:42,434] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-08-19 15:19:42,434] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-08-19 15:19:42,438] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-08-19 15:19:42,438] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-08-19 15:19:42,438] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-08-19 15:19:42,439] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-08-19 15:19:42,439] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-08-19 15:19:42,439] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-08-19 15:19:42,439] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-08-19 15:19:42,439] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-08-19 15:19:42,439] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-08-19 15:19:42,439] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G247_M08A_SJ.out.tab [2025-08-19 15:19:44,541] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M08A_marked_dup_metrics.txt [2025-08-19 15:19:44,543] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M08A_marked_dup_metrics.txt [2025-08-19 15:19:44,544] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M08A_marked_dup_metrics.txt [2025-08-19 15:19:44,544] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M08A_marked_dup_metrics.txt [2025-08-19 15:19:44,548] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M08A_marked_dup_metrics.txt [2025-08-19 15:19:44,560] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G247_M08A_hist.pdf [2025-08-19 15:19:44,566] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M08A_metrics [2025-08-19 15:19:44,568] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M08A_metrics [2025-08-19 15:19:44,568] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M08A_metrics [2025-08-19 15:19:44,568] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M08A_metrics [2025-08-19 15:19:44,573] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M08A_metrics [2025-08-19 15:19:44,640] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-08-19 15:19:44,642] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-08-19 15:19:44,642] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-08-19 15:19:44,643] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-08-19 15:19:44,646] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-08-19 15:19:44,646] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-08-19 15:19:44,646] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-08-19 15:19:44,646] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out [2025-08-19 15:19:44,646] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G247_M08A_featureCounts.out 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search pattern filesize limit: Step_06_G247_RNASEQ_G247_M14.o9884250 [2025-08-19 15:19:58,091] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M14.o9884250 [2025-08-19 15:19:58,091] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M14.o9884250 [2025-08-19 15:19:58,091] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M14.o9884250 [2025-08-19 15:19:58,096] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M14.o9884250 [2025-08-19 15:19:58,112] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M12.o9884248 [2025-08-19 15:19:58,114] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M12.o9884248 [2025-08-19 15:19:58,115] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M12.o9884248 [2025-08-19 15:19:58,115] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M12.o9884248 [2025-08-19 15:19:58,119] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M12.o9884248 [2025-08-19 15:19:58,138] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M16.o9884253 [2025-08-19 15:19:58,142] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M16.o9884253 [2025-08-19 15:19:58,143] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M16.o9884253 [2025-08-19 15:19:58,143] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M16.o9884253 [2025-08-19 15:19:58,148] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M16.o9884253 [2025-08-19 15:19:58,167] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M10.o9884246 [2025-08-19 15:19:58,170] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M10.o9884246 [2025-08-19 15:19:58,170] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M10.o9884246 [2025-08-19 15:19:58,170] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M10.o9884246 [2025-08-19 15:19:58,175] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M10.o9884246 [2025-08-19 15:19:58,196] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M06.o9884242 [2025-08-19 15:19:58,199] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M06.o9884242 [2025-08-19 15:19:58,199] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M06.o9884242 [2025-08-19 15:19:58,199] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M06.o9884242 [2025-08-19 15:19:58,204] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G247_RNASEQ_G247_M06.o9884242 [2025-08-19 15:19:58,231] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2025-08-19 15:19:58,234] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2025-08-19 15:19:58,237] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2025-08-19 15:19:58,251] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2025-08-19 15:19:58,254] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2025-08-19 15:19:58,269] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2025-08-19 15:19:58,276] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2025-08-19 15:19:58,279] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2025-08-19 15:19:58,280] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2025-08-19 15:19:58,280] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2025-08-19 15:19:58,285] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2025-08-19 15:19:58,285] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2025-08-19 15:19:58,285] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2025-08-19 15:19:58,285] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2025-08-19 15:19:58,285] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2025-08-19 15:19:58,285] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2025-08-19 15:19:58,285] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2025-08-19 15:19:58,285] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2025-08-19 15:19:58,285] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2025-08-19 15:19:58,285] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2025-08-19 15:19:59,098] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-19 15:19:59,100] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-19 15:19:59,100] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-19 15:19:59,100] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-19 15:19:59,104] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-19 15:19:59,156] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-19 15:19:59,159] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-19 15:19:59,159] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-19 15:19:59,159] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-19 15:19:59,163] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-19 15:20:00,165] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2025-08-19 15:20:00,168] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2025-08-19 15:20:00,173] multiqc [DEBUG ] No samples found: custom_content [2025-08-19 15:20:00,182] multiqc [DEBUG ] No samples found: ccs [2025-08-19 15:20:00,190] multiqc [DEBUG ] No samples found: ngsderive [2025-08-19 15:20:00,197] multiqc [DEBUG ] No samples found: purple [2025-08-19 15:20:00,205] multiqc [DEBUG ] No samples found: conpair [2025-08-19 15:20:00,217] multiqc [DEBUG ] No samples found: lima [2025-08-19 15:20:00,225] multiqc [DEBUG ] No samples found: peddy [2025-08-19 15:20:00,233] multiqc [DEBUG ] No samples found: somalier [2025-08-19 15:20:00,239] multiqc [DEBUG ] No samples found: methylQA [2025-08-19 15:20:00,249] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2025-08-19 15:20:00,249] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2025-08-19 15:20:00,249] multiqc [DEBUG ] No samples found: mosdepth [2025-08-19 15:20:00,256] multiqc [DEBUG ] No samples found: phantompeakqualtools [2025-08-19 15:20:00,261] multiqc [DEBUG ] No samples found: qualimap [2025-08-19 15:20:00,268] multiqc [DEBUG ] No samples found: preseq [2025-08-19 15:20:00,279] multiqc [DEBUG ] No samples found: quast [2025-08-19 15:20:00,289] multiqc [DEBUG ] No samples found: qorts [2025-08-19 15:20:00,298] multiqc [DEBUG ] No samples found: rna_seqc [2025-08-19 15:20:00,306] multiqc [DEBUG ] No samples found: rockhopper [2025-08-19 15:20:00,313] multiqc [DEBUG ] No samples found: rsem [2025-08-19 15:20:00,378] multiqc.modules.rseqc.rseqc [INFO ] Found 18 infer_experiment reports [2025-08-19 15:20:00,419] multiqc [DEBUG ] No samples found: busco [2025-08-19 15:20:00,427] multiqc [DEBUG ] No samples found: bustools [2025-08-19 15:20:00,435] multiqc [DEBUG ] No samples found: goleft_indexcov [2025-08-19 15:20:00,442] multiqc [DEBUG ] No samples found: gffcompare [2025-08-19 15:20:00,447] multiqc [DEBUG ] No samples found: disambiguate [2025-08-19 15:20:00,452] multiqc [DEBUG ] No samples found: supernova [2025-08-19 15:20:00,468] multiqc [DEBUG ] No samples found: deeptools [2025-08-19 15:20:00,478] multiqc [DEBUG ] No samples found: sargasso [2025-08-19 15:20:00,485] multiqc [DEBUG ] No samples found: verifybamid [2025-08-19 15:20:00,493] multiqc [DEBUG ] No samples found: mirtrace [2025-08-19 15:20:00,498] multiqc [DEBUG ] No samples found: happy [2025-08-19 15:20:00,503] multiqc [DEBUG ] No samples found: mirtop [2025-08-19 15:20:00,510] multiqc [DEBUG ] No samples found: sambamba [2025-08-19 15:20:00,520] multiqc [DEBUG ] No samples found: homer [2025-08-19 15:20:00,534] multiqc [DEBUG ] No samples found: hops [2025-08-19 15:20:00,543] multiqc [DEBUG ] No samples found: macs2 [2025-08-19 15:20:00,550] multiqc [DEBUG ] No samples found: theta2 [2025-08-19 15:20:00,559] multiqc [DEBUG ] No samples found: snpeff [2025-08-19 15:20:00,570] multiqc [DEBUG ] No samples found: gatk [2025-08-19 15:20:00,577] multiqc [DEBUG ] No samples found: htseq [2025-08-19 15:20:00,584] multiqc [DEBUG ] No samples found: bcftools [2025-08-19 15:20:00,592] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M14_sorted [2025-08-19 15:20:00,596] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M11_sorted [2025-08-19 15:20:00,599] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M16_sorted [2025-08-19 15:20:00,603] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M13_sorted [2025-08-19 15:20:00,606] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M09A_sorted [2025-08-19 15:20:00,610] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M08_sorted [2025-08-19 15:20:00,613] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M05_sorted [2025-08-19 15:20:00,616] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M02_sorted [2025-08-19 15:20:00,620] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M07_sorted [2025-08-19 15:20:00,623] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M06A_sorted [2025-08-19 15:20:00,627] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M10_sorted [2025-08-19 15:20:00,631] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M15_sorted [2025-08-19 15:20:00,634] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M12_sorted [2025-08-19 15:20:00,636] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M04_sorted [2025-08-19 15:20:00,638] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M09_sorted [2025-08-19 15:20:00,640] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M01_sorted [2025-08-19 15:20:00,642] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M06_sorted [2025-08-19 15:20:00,644] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M03_sorted [2025-08-19 15:20:00,646] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G247_M08A_sorted [2025-08-19 15:20:00,647] multiqc.modules.featureCounts.feature_counts [INFO ] Found 19 reports [2025-08-19 15:20:00,666] multiqc [DEBUG ] No samples found: fgbio [2025-08-19 15:20:00,684] multiqc [DEBUG ] No samples found: dragen [2025-08-19 15:20:00,692] multiqc [DEBUG ] No samples found: dedup [2025-08-19 15:20:00,698] multiqc [DEBUG ] No samples found: damageprofiler [2025-08-19 15:20:00,737] multiqc [DEBUG ] No samples found: biobambam2 [2025-08-19 15:20:00,743] multiqc [DEBUG ] No samples found: jcvi [2025-08-19 15:20:00,749] multiqc [DEBUG ] No samples found: mtnucratio [2025-08-19 15:20:01,578] multiqc.modules.picard.picard [INFO ] Found 19 InsertSizeMetrics reports [2025-08-19 15:20:01,610] multiqc.modules.picard.picard [INFO ] Found 19 MarkDuplicates reports [2025-08-19 15:20:01,659] multiqc.modules.picard.picard [INFO ] Found 19 RnaSeqMetrics reports [2025-08-19 15:20:01,665] multiqc [DEBUG ] No samples found: vep [2025-08-19 15:20:01,675] multiqc [DEBUG ] No samples found: sentieon [2025-08-19 15:20:01,681] multiqc [DEBUG ] No samples found: prokka [2025-08-19 15:20:01,687] multiqc [DEBUG ] No samples found: qc3C [2025-08-19 15:20:01,693] multiqc [DEBUG ] No samples found: nanostat [2025-08-19 15:20:01,700] multiqc [DEBUG ] No samples found: samblaster [2025-08-19 15:20:01,784] multiqc.modules.samtools.samtools [INFO ] Found 57 flagstat reports [2025-08-19 15:20:01,791] multiqc [DEBUG ] No samples found: sexdeterrmine [2025-08-19 15:20:01,796] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2025-08-19 15:20:01,804] multiqc [DEBUG ] No samples found: bamtools [2025-08-19 15:20:01,813] multiqc [DEBUG ] No samples found: jellyfish [2025-08-19 15:20:01,826] multiqc [DEBUG ] No samples found: vcftools [2025-08-19 15:20:01,834] multiqc [DEBUG ] No samples found: longranger [2025-08-19 15:20:01,841] multiqc [DEBUG ] No samples found: stacks [2025-08-19 15:20:01,848] multiqc [DEBUG ] No samples found: varscan2 [2025-08-19 15:20:01,854] multiqc [DEBUG ] No samples found: snippy [2025-08-19 15:20:01,875] multiqc [DEBUG ] No samples found: bbmap [2025-08-19 15:20:01,883] multiqc [DEBUG ] No samples found: bismark [2025-08-19 15:20:01,890] multiqc [DEBUG ] No samples found: biscuit [2025-08-19 15:20:01,897] multiqc [DEBUG ] No samples found: hicexplorer [2025-08-19 15:20:01,905] multiqc [DEBUG ] No samples found: hicup [2025-08-19 15:20:01,910] multiqc [DEBUG ] No samples found: hicpro [2025-08-19 15:20:01,916] multiqc [DEBUG ] No samples found: salmon [2025-08-19 15:20:01,921] multiqc [DEBUG ] No samples found: kallisto [2025-08-19 15:20:01,927] multiqc [DEBUG ] No samples found: slamdunk [2025-08-19 15:20:03,999] multiqc.modules.star.star [INFO ] Found 19 reports and 19 gene count files [2025-08-19 15:20:04,006] multiqc [DEBUG ] No samples found: hisat2 [2025-08-19 15:20:04,013] multiqc [DEBUG ] No samples found: tophat [2025-08-19 15:20:04,019] multiqc [DEBUG ] No samples found: bowtie2 [2025-08-19 15:20:04,024] multiqc [DEBUG ] No samples found: bowtie1 [2025-08-19 15:20:04,036] multiqc [DEBUG ] No samples found: snpsplit [2025-08-19 15:20:04,044] multiqc [DEBUG ] No samples found: odgi [2025-08-19 15:20:04,051] multiqc [DEBUG ] No samples found: pangolin [2025-08-19 15:20:04,057] multiqc [DEBUG ] No samples found: kat [2025-08-19 15:20:04,064] multiqc [DEBUG ] No samples found: leehom [2025-08-19 15:20:04,073] multiqc [DEBUG ] No samples found: adapterRemoval [2025-08-19 15:20:04,079] multiqc [DEBUG ] No samples found: clipandmerge [2025-08-19 15:20:04,084] multiqc [DEBUG ] No samples found: cutadapt [2025-08-19 15:20:04,089] multiqc [DEBUG ] No samples found: flexbar [2025-08-19 15:20:04,094] multiqc [DEBUG ] No samples found: kaiju [2025-08-19 15:20:04,100] multiqc [DEBUG ] No samples found: kraken [2025-08-19 15:20:04,105] multiqc [DEBUG ] No samples found: malt [2025-08-19 15:20:04,110] multiqc [DEBUG ] No samples found: trimmomatic [2025-08-19 15:20:04,115] multiqc [DEBUG ] No samples found: sickle [2025-08-19 15:20:04,120] multiqc [DEBUG ] No samples found: skewer [2025-08-19 15:20:04,125] multiqc [DEBUG ] No samples found: sortmerna [2025-08-19 15:20:04,130] multiqc [DEBUG ] No samples found: biobloomtools [2025-08-19 15:20:04,138] multiqc [DEBUG ] No samples found: fastq_screen [2025-08-19 15:20:04,145] multiqc [DEBUG ] No samples found: afterqc [2025-08-19 15:20:04,171] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-19 15:20:04,184] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-19 15:20:04,199] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-19 15:20:04,221] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-19 15:20:04,247] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-19 15:20:04,273] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-19 15:20:04,293] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-19 15:20:04,321] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-19 15:20:04,338] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-19 15:20:04,367] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-19 15:20:04,388] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-19 15:20:04,417] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-19 15:20:04,439] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-19 15:20:04,467] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-19 15:20:04,487] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-19 15:20:04,505] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-19 15:20:04,526] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-19 15:20:04,551] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-19 15:20:04,575] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-19 15:20:04,577] multiqc.modules.fastp.fastp [INFO ] Found 19 reports [2025-08-19 15:20:12,913] multiqc.modules.fastqc.fastqc [INFO ] Found 38 reports [2025-08-19 15:20:12,915] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2025-08-19 15:20:15,594] multiqc [DEBUG ] No samples found: pychopper [2025-08-19 15:20:15,602] multiqc [DEBUG ] No samples found: pycoqc [2025-08-19 15:20:15,610] multiqc [DEBUG ] No samples found: minionqc [2025-08-19 15:20:15,619] multiqc [DEBUG ] No samples found: multivcfanalyzer [2025-08-19 15:20:15,627] multiqc [DEBUG ] No samples found: clusterflow [2025-08-19 15:20:15,634] multiqc [DEBUG ] No samples found: bcl2fastq [2025-08-19 15:20:15,641] multiqc [DEBUG ] No samples found: bclconvert [2025-08-19 15:20:15,648] multiqc [DEBUG ] No samples found: interop [2025-08-19 15:20:15,657] multiqc [DEBUG ] No samples found: ivar [2025-08-19 15:20:15,665] multiqc [DEBUG ] No samples found: flash [2025-08-19 15:20:15,671] multiqc [DEBUG ] No samples found: seqyclean [2025-08-19 15:20:15,677] multiqc [DEBUG ] No samples found: optitype [2025-08-19 15:20:15,766] multiqc [INFO ] Compressing plot data [2025-08-19 15:20:17,632] multiqc [INFO ] Report : multiqc_report.html [2025-08-19 15:20:17,632] multiqc [INFO ] Data : multiqc_data [2025-08-19 15:20:17,632] multiqc [DEBUG ] Moving data file from '/scratch/tmpsr068tps/multiqc_data' to '/projectnb/wax-dk/max/G247_RNASEQ/Scripts/99_final_summary/G247_RNASEQ_multiqc_report/multiqc_data' [2025-08-19 15:20:17,783] multiqc [INFO ] MultiQC complete [2025-08-19 15:20:17,784] multiqc [WARNING] 1 flat-image plot used in the report due to large sample numbers