[2025-08-16 21:38:14,965] multiqc [DEBUG ] This is MultiQC v1.11 [2025-08-16 21:38:14,965] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2025-08-16 21:38:14,965] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2025-08-16 21:38:14,965] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2025-08-16 21:38:14,967] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/G246_RNASEQ/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2025-08-16 21:38:14,967] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2025-08-16 21:38:14,967] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2025-08-16 21:38:14,968] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G246_RNASEQ/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G246_RNASEQ/SAMPLES /projectnb2/wax-dk/max/G246_RNASEQ/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G246_RNASEQ/Scripts/06_CollectMetrics/ [2025-08-16 21:38:16,931] multiqc [WARNING] MultiQC Version v1.30 now available! [2025-08-16 21:38:16,931] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G246_RNASEQ/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G246_RNASEQ/SAMPLES /projectnb2/wax-dk/max/G246_RNASEQ/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G246_RNASEQ/Scripts/06_CollectMetrics/ [2025-08-16 21:38:16,931] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G246_RNASEQ/Scripts/99_final_summary/G246_RNASEQ_multiqc_report [2025-08-16 21:38:16,931] multiqc [DEBUG ] Template : default [2025-08-16 21:38:16,931] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2025-08-16 21:38:16,932] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2025-08-16 21:38:16,932] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmp3ugbtrsw [2025-08-16 21:38:17,285] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G246_RNASEQ/SAMPLES [2025-08-16 21:38:17,285] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G246_RNASEQ/Scripts/03_FASTQC [2025-08-16 21:38:17,285] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G246_RNASEQ/Scripts/06_CollectMetrics [2025-08-16 21:38:17,643] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M21_COMB_2.fq.gz [2025-08-16 21:38:17,643] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M21_COMB_1.fq.gz [2025-08-16 21:38:17,802] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-16 21:38:17,806] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-16 21:38:17,815] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-16 21:38:17,815] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-16 21:38:17,821] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-16 21:38:17,821] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-16 21:38:17,821] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-16 21:38:17,821] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-16 21:38:17,821] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-16 21:38:17,821] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-16 21:38:17,821] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-16 21:38:17,822] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-16 21:38:17,822] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-16 21:38:17,822] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M21_SJ.out.tab [2025-08-16 21:38:19,751] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M21_marked_dup_metrics.txt [2025-08-16 21:38:19,754] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M21_marked_dup_metrics.txt [2025-08-16 21:38:19,755] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M21_marked_dup_metrics.txt [2025-08-16 21:38:19,755] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M21_marked_dup_metrics.txt [2025-08-16 21:38:19,762] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M21_marked_dup_metrics.txt [2025-08-16 21:38:19,781] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M21_hist.pdf [2025-08-16 21:38:19,784] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M21_metrics [2025-08-16 21:38:19,787] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M21_metrics [2025-08-16 21:38:19,787] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M21_metrics [2025-08-16 21:38:19,788] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M21_metrics [2025-08-16 21:38:19,794] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M21_metrics [2025-08-16 21:38:19,883] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:19,887] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:19,888] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:19,888] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:19,894] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:19,894] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:19,894] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:19,894] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:19,894] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:19,894] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:19,894] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:19,894] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:19,914] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:20,827] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:20,831] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:20,831] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:20,832] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:20,836] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:20,836] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:20,836] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:20,836] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:20,836] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:20,836] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:20,836] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:20,836] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:20,855] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M21_featureCounts.out [2025-08-16 21:38:21,714] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M21_metrics [2025-08-16 21:38:21,716] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M21_metrics [2025-08-16 21:38:21,720] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M21_metrics [2025-08-16 21:38:21,766] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M10_COMB_1.fq.gz [2025-08-16 21:38:21,766] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M10_COMB_2.fq.gz [2025-08-16 21:38:21,825] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-16 21:38:21,828] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-16 21:38:21,829] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-16 21:38:21,829] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-16 21:38:21,834] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-16 21:38:21,834] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-16 21:38:21,834] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-16 21:38:21,834] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-16 21:38:21,834] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-16 21:38:21,834] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-16 21:38:21,835] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-16 21:38:21,835] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-16 21:38:21,835] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-16 21:38:21,835] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M10_SJ.out.tab [2025-08-16 21:38:23,647] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M10_marked_dup_metrics.txt [2025-08-16 21:38:23,651] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M10_marked_dup_metrics.txt [2025-08-16 21:38:23,652] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M10_marked_dup_metrics.txt [2025-08-16 21:38:23,652] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M10_marked_dup_metrics.txt [2025-08-16 21:38:23,657] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M10_marked_dup_metrics.txt [2025-08-16 21:38:23,672] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M10_metrics [2025-08-16 21:38:23,674] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M10_metrics [2025-08-16 21:38:23,674] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M10_metrics [2025-08-16 21:38:23,674] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M10_metrics [2025-08-16 21:38:23,677] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M10_metrics [2025-08-16 21:38:23,739] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M10_hist.pdf [2025-08-16 21:38:23,765] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:23,769] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:23,770] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:23,770] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:23,776] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:23,776] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:23,776] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:23,776] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:23,776] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:23,776] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:23,776] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:23,776] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:23,796] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:24,738] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:24,742] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:24,743] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:24,743] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:24,748] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:24,748] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:24,748] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:24,748] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:24,748] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:24,748] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:24,748] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:24,748] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:24,768] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M10_featureCounts.out [2025-08-16 21:38:25,649] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M10_metrics [2025-08-16 21:38:25,652] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M10_metrics [2025-08-16 21:38:25,655] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M10_metrics [2025-08-16 21:38:25,701] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M25_COMB_1.fq.gz [2025-08-16 21:38:25,702] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M25_COMB_2.fq.gz [2025-08-16 21:38:25,846] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-16 21:38:25,850] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-16 21:38:25,851] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-16 21:38:25,851] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-16 21:38:25,857] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-16 21:38:25,857] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-16 21:38:25,857] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-16 21:38:25,857] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-16 21:38:25,857] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-16 21:38:25,857] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-16 21:38:25,857] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-16 21:38:25,857] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-16 21:38:25,858] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-16 21:38:25,858] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M25_SJ.out.tab [2025-08-16 21:38:27,895] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M25_marked_dup_metrics.txt [2025-08-16 21:38:27,899] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M25_marked_dup_metrics.txt [2025-08-16 21:38:27,900] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M25_marked_dup_metrics.txt [2025-08-16 21:38:27,900] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M25_marked_dup_metrics.txt [2025-08-16 21:38:27,906] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M25_marked_dup_metrics.txt [2025-08-16 21:38:27,925] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M25_metrics [2025-08-16 21:38:27,927] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M25_metrics [2025-08-16 21:38:27,928] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M25_metrics [2025-08-16 21:38:27,928] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M25_metrics [2025-08-16 21:38:27,931] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M25_metrics [2025-08-16 21:38:27,979] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M25_hist.pdf [2025-08-16 21:38:28,003] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,006] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,007] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,007] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,012] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,012] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,012] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,012] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,012] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,012] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,013] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,013] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,031] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,947] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,950] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,965] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,965] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,971] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,971] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,971] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,971] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,971] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,971] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,971] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,971] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:28,993] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M25_featureCounts.out [2025-08-16 21:38:29,897] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M25_metrics [2025-08-16 21:38:29,899] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M25_metrics [2025-08-16 21:38:29,903] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M25_metrics [2025-08-16 21:38:29,942] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M14_COMB_2.fq.gz [2025-08-16 21:38:29,942] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M14_COMB_1.fq.gz [2025-08-16 21:38:30,005] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-16 21:38:30,009] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-16 21:38:30,009] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-16 21:38:30,010] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-16 21:38:30,016] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-16 21:38:30,016] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-16 21:38:30,016] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-16 21:38:30,016] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-16 21:38:30,016] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-16 21:38:30,016] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-16 21:38:30,016] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-16 21:38:30,016] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-16 21:38:30,016] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-16 21:38:30,016] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M14_SJ.out.tab [2025-08-16 21:38:31,933] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M14_marked_dup_metrics.txt [2025-08-16 21:38:31,936] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M14_marked_dup_metrics.txt [2025-08-16 21:38:31,936] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M14_marked_dup_metrics.txt [2025-08-16 21:38:31,936] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M14_marked_dup_metrics.txt [2025-08-16 21:38:31,942] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M14_marked_dup_metrics.txt [2025-08-16 21:38:31,953] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M14_hist.pdf [2025-08-16 21:38:31,956] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M14_metrics [2025-08-16 21:38:31,958] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M14_metrics [2025-08-16 21:38:31,958] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M14_metrics [2025-08-16 21:38:31,958] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M14_metrics [2025-08-16 21:38:31,962] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M14_metrics [2025-08-16 21:38:32,038] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:32,041] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:32,042] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:32,042] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:32,047] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:32,047] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:32,048] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:32,048] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:32,048] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:32,048] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:32,048] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:32,048] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:32,067] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:32,985] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:32,988] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:32,989] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:32,989] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:32,995] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:32,995] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:32,995] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:32,995] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:32,995] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:32,995] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:32,995] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:32,996] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:33,015] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M14_featureCounts.out [2025-08-16 21:38:33,884] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M14_metrics [2025-08-16 21:38:33,887] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M14_metrics [2025-08-16 21:38:33,891] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M14_metrics [2025-08-16 21:38:33,930] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M29_COMB_2.fq.gz [2025-08-16 21:38:33,930] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M29_COMB_1.fq.gz [2025-08-16 21:38:33,976] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-16 21:38:33,980] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-16 21:38:33,990] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-16 21:38:33,990] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-16 21:38:33,995] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-16 21:38:33,995] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-16 21:38:33,995] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-16 21:38:33,995] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-16 21:38:33,995] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-16 21:38:33,995] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-16 21:38:33,995] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-16 21:38:33,995] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-16 21:38:33,995] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-16 21:38:33,996] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M29_SJ.out.tab [2025-08-16 21:38:35,938] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M29_marked_dup_metrics.txt [2025-08-16 21:38:35,943] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M29_marked_dup_metrics.txt [2025-08-16 21:38:35,943] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M29_marked_dup_metrics.txt [2025-08-16 21:38:35,943] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M29_marked_dup_metrics.txt [2025-08-16 21:38:35,949] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M29_marked_dup_metrics.txt [2025-08-16 21:38:35,969] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M29_metrics [2025-08-16 21:38:35,972] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M29_metrics [2025-08-16 21:38:35,972] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M29_metrics [2025-08-16 21:38:35,972] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M29_metrics [2025-08-16 21:38:35,977] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M29_metrics [2025-08-16 21:38:36,024] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M29_hist.pdf [2025-08-16 21:38:36,050] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:36,055] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:36,055] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:36,055] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:36,060] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:36,060] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:36,060] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:36,060] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:36,060] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:36,060] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:36,060] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:36,060] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:36,080] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:36,976] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:36,980] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:36,981] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:36,981] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:36,987] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:36,987] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:36,987] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:36,988] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:36,988] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:36,988] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:36,988] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:36,988] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:37,008] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M29_featureCounts.out [2025-08-16 21:38:37,885] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M29_metrics [2025-08-16 21:38:37,887] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M29_metrics [2025-08-16 21:38:37,891] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M29_metrics [2025-08-16 21:38:37,924] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M03_COMB_2.fq.gz [2025-08-16 21:38:37,924] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M03_COMB_1.fq.gz [2025-08-16 21:38:38,011] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-16 21:38:38,014] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-16 21:38:38,015] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-16 21:38:38,015] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-16 21:38:38,020] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-16 21:38:38,020] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-16 21:38:38,020] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-16 21:38:38,020] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-16 21:38:38,020] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-16 21:38:38,020] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-16 21:38:38,020] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-16 21:38:38,020] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-16 21:38:38,020] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-16 21:38:38,020] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M03_SJ.out.tab [2025-08-16 21:38:39,829] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M03_marked_dup_metrics.txt [2025-08-16 21:38:39,833] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M03_marked_dup_metrics.txt [2025-08-16 21:38:39,848] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M03_marked_dup_metrics.txt [2025-08-16 21:38:39,848] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M03_marked_dup_metrics.txt [2025-08-16 21:38:39,856] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M03_marked_dup_metrics.txt [2025-08-16 21:38:39,873] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M03_metrics [2025-08-16 21:38:39,876] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M03_metrics [2025-08-16 21:38:39,876] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M03_metrics [2025-08-16 21:38:39,876] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M03_metrics [2025-08-16 21:38:39,879] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M03_metrics [2025-08-16 21:38:39,926] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M03_hist.pdf [2025-08-16 21:38:39,955] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:39,958] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:39,959] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:39,959] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:39,964] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:39,965] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:39,965] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:39,965] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:39,965] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:39,965] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:39,965] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:39,965] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:39,984] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:40,862] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:40,865] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:40,866] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:40,866] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:40,871] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:40,871] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:40,871] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:40,871] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:40,871] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:40,871] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:40,871] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:40,871] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:40,890] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M03_featureCounts.out [2025-08-16 21:38:41,752] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M03_metrics [2025-08-16 21:38:41,755] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M03_metrics [2025-08-16 21:38:41,760] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M03_metrics [2025-08-16 21:38:41,799] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M18_COMB_2.fq.gz [2025-08-16 21:38:41,802] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M18_COMB_1.fq.gz [2025-08-16 21:38:41,890] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-16 21:38:41,894] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-16 21:38:41,895] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-16 21:38:41,895] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-16 21:38:41,900] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-16 21:38:41,900] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-16 21:38:41,900] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-16 21:38:41,900] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-16 21:38:41,900] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-16 21:38:41,900] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-16 21:38:41,900] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-16 21:38:41,900] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-16 21:38:41,900] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-16 21:38:41,900] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M18_SJ.out.tab [2025-08-16 21:38:43,709] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M18_marked_dup_metrics.txt [2025-08-16 21:38:43,712] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M18_marked_dup_metrics.txt [2025-08-16 21:38:43,713] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M18_marked_dup_metrics.txt [2025-08-16 21:38:43,713] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M18_marked_dup_metrics.txt [2025-08-16 21:38:43,718] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M18_marked_dup_metrics.txt [2025-08-16 21:38:43,740] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M18_metrics [2025-08-16 21:38:43,743] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M18_metrics [2025-08-16 21:38:43,743] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M18_metrics [2025-08-16 21:38:43,743] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M18_metrics [2025-08-16 21:38:43,747] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M18_metrics [2025-08-16 21:38:43,795] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M18_hist.pdf [2025-08-16 21:38:43,844] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:43,848] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:43,848] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:43,848] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:43,855] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:43,855] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:43,855] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:43,855] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:43,855] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:43,855] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:43,855] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:43,855] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:43,875] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:44,753] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:44,757] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:44,757] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:44,758] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:44,763] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:44,764] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:44,764] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:44,764] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:44,764] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:44,764] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:44,764] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:44,764] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:44,783] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M18_featureCounts.out [2025-08-16 21:38:45,640] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M18_metrics [2025-08-16 21:38:45,642] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M18_metrics [2025-08-16 21:38:45,663] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M18_metrics [2025-08-16 21:38:45,716] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M07_COMB_2.fq.gz [2025-08-16 21:38:45,718] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M07_COMB_1.fq.gz [2025-08-16 21:38:45,770] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-16 21:38:45,774] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-16 21:38:45,774] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-16 21:38:45,774] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-16 21:38:45,780] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-16 21:38:45,780] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-16 21:38:45,780] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-16 21:38:45,780] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-16 21:38:45,781] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-16 21:38:45,781] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-16 21:38:45,781] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-16 21:38:45,781] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-16 21:38:45,781] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-16 21:38:45,781] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M07_SJ.out.tab [2025-08-16 21:38:47,669] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M07_marked_dup_metrics.txt [2025-08-16 21:38:47,672] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M07_marked_dup_metrics.txt [2025-08-16 21:38:47,673] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M07_marked_dup_metrics.txt [2025-08-16 21:38:47,673] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M07_marked_dup_metrics.txt [2025-08-16 21:38:47,679] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M07_marked_dup_metrics.txt [2025-08-16 21:38:47,691] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M07_hist.pdf [2025-08-16 21:38:47,694] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M07_metrics [2025-08-16 21:38:47,696] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M07_metrics [2025-08-16 21:38:47,696] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M07_metrics [2025-08-16 21:38:47,696] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M07_metrics [2025-08-16 21:38:47,701] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M07_metrics [2025-08-16 21:38:47,781] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:47,785] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:47,785] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:47,786] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:47,792] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:47,792] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:47,792] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:47,792] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:47,792] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:47,792] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:47,792] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:47,792] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:47,812] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:48,687] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:48,691] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:48,691] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:48,691] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:48,696] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:48,697] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:48,697] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:48,697] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:48,697] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:48,697] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:48,697] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:48,697] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:48,715] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M07_featureCounts.out [2025-08-16 21:38:49,590] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M07_metrics [2025-08-16 21:38:49,592] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M07_metrics [2025-08-16 21:38:49,598] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M07_metrics [2025-08-16 21:38:49,614] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M31_COMB_1.fq.gz [2025-08-16 21:38:49,617] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M31_COMB_2.fq.gz [2025-08-16 21:38:49,733] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-16 21:38:49,737] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-16 21:38:49,738] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-16 21:38:49,738] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-16 21:38:49,743] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-16 21:38:49,743] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-16 21:38:49,743] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-16 21:38:49,743] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-16 21:38:49,743] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-16 21:38:49,743] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-16 21:38:49,743] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-16 21:38:49,743] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-16 21:38:49,743] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-16 21:38:49,743] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M31_SJ.out.tab [2025-08-16 21:38:51,632] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M31_marked_dup_metrics.txt [2025-08-16 21:38:51,636] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M31_marked_dup_metrics.txt [2025-08-16 21:38:51,637] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M31_marked_dup_metrics.txt [2025-08-16 21:38:51,637] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M31_marked_dup_metrics.txt [2025-08-16 21:38:51,643] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M31_marked_dup_metrics.txt [2025-08-16 21:38:51,659] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M31_metrics [2025-08-16 21:38:51,661] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M31_metrics [2025-08-16 21:38:51,661] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M31_metrics [2025-08-16 21:38:51,661] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M31_metrics [2025-08-16 21:38:51,665] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M31_metrics [2025-08-16 21:38:51,715] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M31_hist.pdf [2025-08-16 21:38:51,759] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:51,762] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:51,762] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:51,763] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:51,768] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:51,768] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:51,768] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:51,768] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:51,768] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:51,768] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:51,768] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:51,768] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:51,787] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:52,681] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:52,685] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:52,685] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:52,685] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:52,691] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:52,691] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:52,691] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:52,691] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:52,691] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:52,691] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:52,691] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:52,691] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:52,711] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M31_featureCounts.out [2025-08-16 21:38:53,572] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M31_metrics [2025-08-16 21:38:53,574] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M31_metrics [2025-08-16 21:38:53,578] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M31_metrics [2025-08-16 21:38:53,617] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M20_COMB_2.fq.gz [2025-08-16 21:38:53,619] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M20_COMB_1.fq.gz [2025-08-16 21:38:53,666] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-16 21:38:53,670] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-16 21:38:53,671] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-16 21:38:53,671] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-16 21:38:53,676] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-16 21:38:53,676] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-16 21:38:53,676] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-16 21:38:53,676] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-16 21:38:53,676] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-16 21:38:53,676] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-16 21:38:53,676] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-16 21:38:53,676] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-16 21:38:53,676] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-16 21:38:53,676] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M20_SJ.out.tab [2025-08-16 21:38:55,609] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M20_marked_dup_metrics.txt [2025-08-16 21:38:55,613] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M20_marked_dup_metrics.txt [2025-08-16 21:38:55,613] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M20_marked_dup_metrics.txt [2025-08-16 21:38:55,613] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M20_marked_dup_metrics.txt [2025-08-16 21:38:55,620] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M20_marked_dup_metrics.txt [2025-08-16 21:38:55,635] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M20_metrics [2025-08-16 21:38:55,637] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M20_metrics [2025-08-16 21:38:55,637] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M20_metrics [2025-08-16 21:38:55,637] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M20_metrics [2025-08-16 21:38:55,641] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M20_metrics [2025-08-16 21:38:55,690] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M20_hist.pdf [2025-08-16 21:38:55,713] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:55,716] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:55,716] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:55,716] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:55,721] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:55,721] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:55,721] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:55,721] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:55,721] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:55,721] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:55,721] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:55,722] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:55,748] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:56,636] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:56,639] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:56,648] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:56,648] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:56,652] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:56,653] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:56,653] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:56,653] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:56,653] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:56,653] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:56,653] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:56,653] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:56,674] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M20_featureCounts.out [2025-08-16 21:38:57,538] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M20_metrics [2025-08-16 21:38:57,540] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M20_metrics [2025-08-16 21:38:57,544] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M20_metrics [2025-08-16 21:38:57,589] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M24_COMB_1.fq.gz [2025-08-16 21:38:57,591] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M24_COMB_2.fq.gz [2025-08-16 21:38:57,695] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-16 21:38:57,699] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-16 21:38:57,700] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-16 21:38:57,700] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-16 21:38:57,704] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-16 21:38:57,704] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-16 21:38:57,704] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-16 21:38:57,704] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-16 21:38:57,704] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-16 21:38:57,704] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-16 21:38:57,705] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-16 21:38:57,705] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-16 21:38:57,705] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-16 21:38:57,705] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M24_SJ.out.tab [2025-08-16 21:38:59,667] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M24_marked_dup_metrics.txt [2025-08-16 21:38:59,670] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M24_marked_dup_metrics.txt [2025-08-16 21:38:59,670] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M24_marked_dup_metrics.txt [2025-08-16 21:38:59,670] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M24_marked_dup_metrics.txt [2025-08-16 21:38:59,674] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M24_marked_dup_metrics.txt [2025-08-16 21:38:59,690] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M24_metrics [2025-08-16 21:38:59,692] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M24_metrics [2025-08-16 21:38:59,692] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M24_metrics [2025-08-16 21:38:59,692] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M24_metrics [2025-08-16 21:38:59,695] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M24_metrics [2025-08-16 21:38:59,737] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M24_hist.pdf [2025-08-16 21:38:59,770] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:38:59,773] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:38:59,774] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:38:59,774] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:38:59,779] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:38:59,779] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:38:59,779] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:38:59,779] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:38:59,779] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:38:59,779] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:38:59,779] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:38:59,779] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:38:59,798] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:39:00,696] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:39:00,700] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:39:00,700] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:39:00,701] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:39:00,705] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:39:00,705] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:39:00,705] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:39:00,705] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:39:00,705] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:39:00,705] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:39:00,705] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:39:00,705] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:39:00,724] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M24_featureCounts.out [2025-08-16 21:39:01,594] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M24_metrics [2025-08-16 21:39:01,596] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M24_metrics [2025-08-16 21:39:01,601] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M24_metrics [2025-08-16 21:39:01,660] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M13_COMB_2.fq.gz [2025-08-16 21:39:01,662] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M13_COMB_1.fq.gz [2025-08-16 21:39:01,762] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-16 21:39:01,766] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-16 21:39:01,767] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-16 21:39:01,767] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-16 21:39:01,772] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-16 21:39:01,773] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-16 21:39:01,773] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-16 21:39:01,773] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-16 21:39:01,773] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-16 21:39:01,773] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-16 21:39:01,773] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-16 21:39:01,773] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-16 21:39:01,773] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-16 21:39:01,773] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M13_SJ.out.tab [2025-08-16 21:39:03,812] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M13_marked_dup_metrics.txt [2025-08-16 21:39:03,816] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M13_marked_dup_metrics.txt [2025-08-16 21:39:03,817] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M13_marked_dup_metrics.txt [2025-08-16 21:39:03,817] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M13_marked_dup_metrics.txt [2025-08-16 21:39:03,822] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M13_marked_dup_metrics.txt [2025-08-16 21:39:03,835] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M13_hist.pdf [2025-08-16 21:39:03,839] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M13_metrics [2025-08-16 21:39:03,841] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M13_metrics [2025-08-16 21:39:03,841] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M13_metrics [2025-08-16 21:39:03,841] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M13_metrics [2025-08-16 21:39:03,848] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M13_metrics [2025-08-16 21:39:03,928] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:03,932] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:03,932] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:03,932] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:03,938] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:03,938] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:03,938] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:03,938] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:03,938] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:03,938] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:03,938] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:03,938] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:03,957] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:04,862] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:04,866] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:04,866] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:04,866] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:04,872] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:04,872] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:04,872] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:04,872] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:04,872] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:04,872] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:04,872] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:04,872] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:04,891] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M13_featureCounts.out [2025-08-16 21:39:05,768] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M13_metrics [2025-08-16 21:39:05,771] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M13_metrics [2025-08-16 21:39:05,775] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M13_metrics [2025-08-16 21:39:05,818] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M28_COMB_1.fq.gz [2025-08-16 21:39:05,820] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M28_COMB_2.fq.gz [2025-08-16 21:39:05,906] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-16 21:39:05,910] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-16 21:39:05,910] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-16 21:39:05,910] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-16 21:39:05,915] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-16 21:39:05,915] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-16 21:39:05,915] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-16 21:39:05,915] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-16 21:39:05,916] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-16 21:39:05,916] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-16 21:39:05,916] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-16 21:39:05,916] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-16 21:39:05,916] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-16 21:39:05,916] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M28_SJ.out.tab [2025-08-16 21:39:07,758] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M28_marked_dup_metrics.txt [2025-08-16 21:39:07,761] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M28_marked_dup_metrics.txt [2025-08-16 21:39:07,761] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M28_marked_dup_metrics.txt [2025-08-16 21:39:07,761] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M28_marked_dup_metrics.txt [2025-08-16 21:39:07,766] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M28_marked_dup_metrics.txt [2025-08-16 21:39:07,786] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M28_metrics [2025-08-16 21:39:07,788] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M28_metrics [2025-08-16 21:39:07,788] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M28_metrics [2025-08-16 21:39:07,788] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M28_metrics [2025-08-16 21:39:07,791] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M28_metrics [2025-08-16 21:39:07,844] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M28_hist.pdf [2025-08-16 21:39:07,873] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:07,877] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:07,878] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:07,878] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:07,882] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:07,882] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:07,882] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:07,882] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:07,882] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:07,882] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:07,882] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:07,882] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:07,901] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:08,801] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:08,805] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:08,806] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:08,806] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:08,810] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:08,810] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:08,811] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:08,811] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:08,811] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:08,811] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:08,811] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:08,811] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:08,829] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M28_featureCounts.out [2025-08-16 21:39:09,717] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M28_metrics [2025-08-16 21:39:09,719] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M28_metrics [2025-08-16 21:39:09,723] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M28_metrics [2025-08-16 21:39:09,770] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M02_COMB_1.fq.gz [2025-08-16 21:39:09,772] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M02_COMB_2.fq.gz [2025-08-16 21:39:09,824] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-16 21:39:09,828] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-16 21:39:09,828] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-16 21:39:09,828] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-16 21:39:09,833] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-16 21:39:09,833] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-16 21:39:09,834] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-16 21:39:09,834] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-16 21:39:09,834] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-16 21:39:09,834] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-16 21:39:09,834] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-16 21:39:09,834] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-16 21:39:09,834] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-16 21:39:09,834] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M02_SJ.out.tab [2025-08-16 21:39:11,798] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M02_marked_dup_metrics.txt [2025-08-16 21:39:11,802] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M02_marked_dup_metrics.txt [2025-08-16 21:39:11,802] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M02_marked_dup_metrics.txt [2025-08-16 21:39:11,803] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M02_marked_dup_metrics.txt [2025-08-16 21:39:11,809] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M02_marked_dup_metrics.txt [2025-08-16 21:39:11,821] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M02_hist.pdf [2025-08-16 21:39:11,825] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M02_metrics [2025-08-16 21:39:11,827] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M02_metrics [2025-08-16 21:39:11,827] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M02_metrics [2025-08-16 21:39:11,827] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M02_metrics [2025-08-16 21:39:11,830] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M02_metrics [2025-08-16 21:39:11,898] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:11,902] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:11,903] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:11,903] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:11,909] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:11,909] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:11,909] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:11,909] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:11,909] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:11,909] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:11,909] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:11,909] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:11,929] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:12,832] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:12,836] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:12,847] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:12,848] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:12,855] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:12,855] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:12,855] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:12,855] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:12,855] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:12,855] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:12,855] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:12,855] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:12,877] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M02_featureCounts.out [2025-08-16 21:39:13,771] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M02_metrics [2025-08-16 21:39:13,773] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M02_metrics [2025-08-16 21:39:13,777] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M02_metrics [2025-08-16 21:39:13,813] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M17_COMB_1.fq.gz [2025-08-16 21:39:13,816] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M17_COMB_2.fq.gz [2025-08-16 21:39:13,864] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-16 21:39:13,867] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-16 21:39:13,868] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-16 21:39:13,868] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-16 21:39:13,873] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-16 21:39:13,873] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-16 21:39:13,873] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-16 21:39:13,873] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-16 21:39:13,873] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-16 21:39:13,873] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-16 21:39:13,873] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-16 21:39:13,873] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-16 21:39:13,873] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-16 21:39:13,873] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M17_SJ.out.tab [2025-08-16 21:39:15,850] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M17_marked_dup_metrics.txt [2025-08-16 21:39:15,854] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M17_marked_dup_metrics.txt [2025-08-16 21:39:15,854] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M17_marked_dup_metrics.txt [2025-08-16 21:39:15,854] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M17_marked_dup_metrics.txt [2025-08-16 21:39:15,860] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M17_marked_dup_metrics.txt [2025-08-16 21:39:15,881] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M17_metrics [2025-08-16 21:39:15,883] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M17_metrics [2025-08-16 21:39:15,884] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M17_metrics [2025-08-16 21:39:15,884] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M17_metrics [2025-08-16 21:39:15,889] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M17_metrics [2025-08-16 21:39:15,934] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M17_hist.pdf [2025-08-16 21:39:15,965] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:15,969] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:15,970] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:15,970] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:15,974] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:15,974] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:15,974] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:15,974] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:15,974] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:15,974] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:15,974] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:15,974] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:15,993] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:16,922] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:16,926] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:16,927] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:16,927] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:16,932] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:16,932] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:16,932] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:16,932] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:16,932] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:16,932] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:16,932] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:16,932] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:16,951] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M17_featureCounts.out [2025-08-16 21:39:17,844] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M17_metrics [2025-08-16 21:39:17,847] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M17_metrics [2025-08-16 21:39:17,871] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M17_metrics [2025-08-16 21:39:17,915] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M30_COMB_2.fq.gz [2025-08-16 21:39:17,917] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M30_COMB_1.fq.gz [2025-08-16 21:39:18,022] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-16 21:39:18,025] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-16 21:39:18,026] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-16 21:39:18,026] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-16 21:39:18,032] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-16 21:39:18,032] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-16 21:39:18,032] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-16 21:39:18,032] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-16 21:39:18,032] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-16 21:39:18,032] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-16 21:39:18,032] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-16 21:39:18,033] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-16 21:39:18,033] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-16 21:39:18,033] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M30_SJ.out.tab [2025-08-16 21:39:19,705] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M30_marked_dup_metrics.txt [2025-08-16 21:39:19,709] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M30_marked_dup_metrics.txt [2025-08-16 21:39:19,709] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M30_marked_dup_metrics.txt [2025-08-16 21:39:19,709] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M30_marked_dup_metrics.txt [2025-08-16 21:39:19,715] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M30_marked_dup_metrics.txt [2025-08-16 21:39:19,733] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M30_metrics [2025-08-16 21:39:19,735] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M30_metrics [2025-08-16 21:39:19,735] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M30_metrics [2025-08-16 21:39:19,735] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M30_metrics [2025-08-16 21:39:19,742] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M30_metrics [2025-08-16 21:39:19,799] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M30_hist.pdf [2025-08-16 21:39:19,826] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:19,829] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:19,830] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:19,830] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:19,835] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:19,835] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:19,835] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:19,835] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:19,835] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:19,835] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:19,835] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:19,835] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:19,854] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:20,769] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:20,773] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:20,773] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:20,773] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:20,779] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:20,779] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:20,779] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:20,779] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:20,779] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:20,779] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:20,779] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:20,779] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:20,798] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M30_featureCounts.out [2025-08-16 21:39:21,678] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M30_metrics [2025-08-16 21:39:21,681] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M30_metrics [2025-08-16 21:39:21,685] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M30_metrics [2025-08-16 21:39:21,723] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M23_COMB_2.fq.gz [2025-08-16 21:39:21,726] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M23_COMB_1.fq.gz [2025-08-16 21:39:21,811] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-16 21:39:21,814] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-16 21:39:21,815] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-16 21:39:21,815] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-16 21:39:21,819] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-16 21:39:21,819] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-16 21:39:21,819] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-16 21:39:21,819] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-16 21:39:21,820] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-16 21:39:21,820] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-16 21:39:21,820] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-16 21:39:21,820] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-16 21:39:21,820] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-16 21:39:21,820] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M23_SJ.out.tab [2025-08-16 21:39:23,605] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M23_marked_dup_metrics.txt [2025-08-16 21:39:23,609] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M23_marked_dup_metrics.txt [2025-08-16 21:39:23,610] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M23_marked_dup_metrics.txt [2025-08-16 21:39:23,610] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M23_marked_dup_metrics.txt [2025-08-16 21:39:23,616] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M23_marked_dup_metrics.txt [2025-08-16 21:39:23,632] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M23_metrics [2025-08-16 21:39:23,634] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M23_metrics [2025-08-16 21:39:23,634] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M23_metrics [2025-08-16 21:39:23,634] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M23_metrics [2025-08-16 21:39:23,637] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M23_metrics [2025-08-16 21:39:23,673] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M23_hist.pdf [2025-08-16 21:39:23,703] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:23,706] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:23,707] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:23,707] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:23,712] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:23,712] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:23,712] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:23,713] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:23,713] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:23,713] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:23,713] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:23,713] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:23,731] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:24,652] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:24,655] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:24,656] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:24,656] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:24,661] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:24,661] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:24,661] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:24,661] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:24,661] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:24,661] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:24,661] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:24,661] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:24,680] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M23_featureCounts.out [2025-08-16 21:39:25,566] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M23_metrics [2025-08-16 21:39:25,568] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M23_metrics [2025-08-16 21:39:25,571] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M23_metrics [2025-08-16 21:39:25,608] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M06_COMB_2.fq.gz [2025-08-16 21:39:25,611] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M06_COMB_1.fq.gz [2025-08-16 21:39:25,731] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-16 21:39:25,735] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-16 21:39:25,735] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-16 21:39:25,735] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-16 21:39:25,740] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-16 21:39:25,741] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-16 21:39:25,741] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-16 21:39:25,741] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-16 21:39:25,741] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-16 21:39:25,741] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-16 21:39:25,741] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-16 21:39:25,741] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-16 21:39:25,741] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-16 21:39:25,741] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M06_SJ.out.tab [2025-08-16 21:39:27,596] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M06_marked_dup_metrics.txt [2025-08-16 21:39:27,600] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M06_marked_dup_metrics.txt [2025-08-16 21:39:27,601] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M06_marked_dup_metrics.txt [2025-08-16 21:39:27,601] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M06_marked_dup_metrics.txt [2025-08-16 21:39:27,606] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M06_marked_dup_metrics.txt [2025-08-16 21:39:27,619] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M06_hist.pdf [2025-08-16 21:39:27,623] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M06_metrics [2025-08-16 21:39:27,625] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M06_metrics [2025-08-16 21:39:27,625] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M06_metrics [2025-08-16 21:39:27,625] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M06_metrics [2025-08-16 21:39:27,629] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M06_metrics [2025-08-16 21:39:27,725] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:27,729] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:27,729] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:27,729] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:27,735] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:27,735] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:27,736] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:27,736] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:27,736] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:27,736] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:27,736] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:27,736] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:27,755] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:28,662] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:28,700] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:28,701] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:28,701] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:28,707] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:28,707] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:28,708] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:28,708] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:28,708] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:28,708] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:28,708] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:28,708] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:28,729] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M06_featureCounts.out [2025-08-16 21:39:29,603] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M06_metrics [2025-08-16 21:39:29,606] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M06_metrics [2025-08-16 21:39:29,612] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M06_metrics [2025-08-16 21:39:29,661] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M12_COMB_1.fq.gz [2025-08-16 21:39:29,664] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M12_COMB_2.fq.gz [2025-08-16 21:39:29,790] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-16 21:39:29,794] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-16 21:39:29,794] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-16 21:39:29,795] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-16 21:39:29,799] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-16 21:39:29,799] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-16 21:39:29,799] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-16 21:39:29,800] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-16 21:39:29,800] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-16 21:39:29,800] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-16 21:39:29,800] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-16 21:39:29,800] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-16 21:39:29,800] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-16 21:39:29,800] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M12_SJ.out.tab [2025-08-16 21:39:31,670] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M12_marked_dup_metrics.txt [2025-08-16 21:39:31,673] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M12_marked_dup_metrics.txt [2025-08-16 21:39:31,673] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M12_marked_dup_metrics.txt [2025-08-16 21:39:31,673] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M12_marked_dup_metrics.txt [2025-08-16 21:39:31,678] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M12_marked_dup_metrics.txt [2025-08-16 21:39:31,690] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M12_hist.pdf [2025-08-16 21:39:31,693] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M12_metrics [2025-08-16 21:39:31,695] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M12_metrics [2025-08-16 21:39:31,696] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M12_metrics [2025-08-16 21:39:31,696] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M12_metrics [2025-08-16 21:39:31,700] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M12_metrics [2025-08-16 21:39:31,795] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:31,799] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:31,799] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:31,799] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:31,805] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:31,805] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:31,805] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:31,805] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:31,805] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:31,805] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:31,805] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:31,805] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:31,825] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:32,767] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:32,771] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:32,771] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:32,771] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:32,775] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:32,776] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:32,776] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:32,776] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:32,776] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:32,776] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:32,776] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:32,776] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:32,796] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M12_featureCounts.out [2025-08-16 21:39:33,689] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M12_metrics [2025-08-16 21:39:33,692] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M12_metrics [2025-08-16 21:39:33,696] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M12_metrics [2025-08-16 21:39:33,734] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M27_COMB_1.fq.gz [2025-08-16 21:39:33,736] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M27_COMB_2.fq.gz [2025-08-16 21:39:33,806] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-16 21:39:33,809] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-16 21:39:33,810] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-16 21:39:33,810] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-16 21:39:33,815] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-16 21:39:33,815] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-16 21:39:33,815] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-16 21:39:33,815] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-16 21:39:33,815] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-16 21:39:33,815] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-16 21:39:33,815] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-16 21:39:33,815] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-16 21:39:33,815] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-16 21:39:33,815] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M27_SJ.out.tab [2025-08-16 21:39:35,863] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M27_marked_dup_metrics.txt [2025-08-16 21:39:35,867] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M27_marked_dup_metrics.txt [2025-08-16 21:39:35,868] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M27_marked_dup_metrics.txt [2025-08-16 21:39:35,868] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M27_marked_dup_metrics.txt [2025-08-16 21:39:35,874] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M27_marked_dup_metrics.txt [2025-08-16 21:39:35,890] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M27_metrics [2025-08-16 21:39:35,892] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M27_metrics [2025-08-16 21:39:35,892] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M27_metrics [2025-08-16 21:39:35,892] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M27_metrics [2025-08-16 21:39:35,896] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M27_metrics [2025-08-16 21:39:35,950] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M27_hist.pdf [2025-08-16 21:39:35,995] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:35,999] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:36,000] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:36,000] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:36,005] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:36,005] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:36,005] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:36,005] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:36,005] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:36,005] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:36,006] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:36,006] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:36,025] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:36,960] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:36,964] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:36,965] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:36,965] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:36,970] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:36,970] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:36,971] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:36,971] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:36,971] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:36,971] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:36,971] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:36,971] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:36,991] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M27_featureCounts.out [2025-08-16 21:39:37,878] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M27_metrics [2025-08-16 21:39:37,881] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M27_metrics [2025-08-16 21:39:37,885] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M27_metrics [2025-08-16 21:39:37,924] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M01_COMB_2.fq.gz [2025-08-16 21:39:37,927] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M01_COMB_1.fq.gz [2025-08-16 21:39:38,012] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-16 21:39:38,016] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-16 21:39:38,016] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-16 21:39:38,017] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-16 21:39:38,022] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-16 21:39:38,022] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-16 21:39:38,023] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-16 21:39:38,023] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-16 21:39:38,023] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-16 21:39:38,023] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-16 21:39:38,023] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-16 21:39:38,023] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-16 21:39:38,057] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M01_SJ.out.tab [2025-08-16 21:39:39,726] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M01_marked_dup_metrics.txt [2025-08-16 21:39:39,729] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M01_marked_dup_metrics.txt [2025-08-16 21:39:39,729] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M01_marked_dup_metrics.txt [2025-08-16 21:39:39,729] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M01_marked_dup_metrics.txt [2025-08-16 21:39:39,734] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M01_marked_dup_metrics.txt [2025-08-16 21:39:39,744] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M01_hist.pdf [2025-08-16 21:39:39,747] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M01_metrics [2025-08-16 21:39:39,749] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M01_metrics [2025-08-16 21:39:39,750] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M01_metrics [2025-08-16 21:39:39,750] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M01_metrics [2025-08-16 21:39:39,754] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M01_metrics [2025-08-16 21:39:39,817] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:39,820] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:39,821] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:39,821] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:39,827] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:39,827] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:39,827] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:39,827] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:39,827] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:39,827] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:39,827] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:39,827] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:39,846] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:40,760] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:40,764] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:40,765] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:40,765] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:40,769] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:40,769] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:40,769] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:40,769] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:40,769] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:40,769] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:40,770] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:40,770] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:40,789] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M01_featureCounts.out [2025-08-16 21:39:41,683] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M01_metrics [2025-08-16 21:39:41,686] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M01_metrics [2025-08-16 21:39:41,691] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M01_metrics [2025-08-16 21:39:41,729] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M16_COMB_2.fq.gz [2025-08-16 21:39:41,732] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M16_COMB_1.fq.gz [2025-08-16 21:39:41,853] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-16 21:39:41,856] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-16 21:39:41,857] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-16 21:39:41,857] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-16 21:39:41,863] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-16 21:39:41,863] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-16 21:39:41,863] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-16 21:39:41,863] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-16 21:39:41,863] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-16 21:39:41,863] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-16 21:39:41,863] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-16 21:39:41,863] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-16 21:39:41,863] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-16 21:39:41,864] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M16_SJ.out.tab [2025-08-16 21:39:43,769] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M16_marked_dup_metrics.txt [2025-08-16 21:39:43,773] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M16_marked_dup_metrics.txt [2025-08-16 21:39:43,773] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M16_marked_dup_metrics.txt [2025-08-16 21:39:43,773] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M16_marked_dup_metrics.txt [2025-08-16 21:39:43,779] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M16_marked_dup_metrics.txt [2025-08-16 21:39:43,790] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M16_hist.pdf [2025-08-16 21:39:43,793] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M16_metrics [2025-08-16 21:39:43,795] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M16_metrics [2025-08-16 21:39:43,795] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M16_metrics [2025-08-16 21:39:43,796] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M16_metrics [2025-08-16 21:39:43,800] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M16_metrics [2025-08-16 21:39:43,872] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:43,876] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:43,877] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:43,877] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:43,883] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:43,883] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:43,883] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:43,897] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:43,897] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:43,897] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:43,897] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:43,897] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:43,924] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:44,840] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:44,843] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:44,844] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:44,844] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:44,849] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:44,849] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:44,849] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:44,849] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:44,850] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:44,850] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:44,850] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:44,850] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:44,868] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M16_featureCounts.out [2025-08-16 21:39:45,755] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M16_metrics [2025-08-16 21:39:45,758] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M16_metrics [2025-08-16 21:39:45,761] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M16_metrics [2025-08-16 21:39:45,806] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M05_COMB_1.fq.gz [2025-08-16 21:39:45,808] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M05_COMB_2.fq.gz [2025-08-16 21:39:45,933] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-16 21:39:45,937] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-16 21:39:45,937] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-16 21:39:45,937] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-16 21:39:45,944] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-16 21:39:45,944] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-16 21:39:45,944] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-16 21:39:45,944] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-16 21:39:45,944] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-16 21:39:45,944] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-16 21:39:45,944] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-16 21:39:45,944] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-16 21:39:45,944] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-16 21:39:45,944] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M05_SJ.out.tab [2025-08-16 21:39:47,901] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M05_marked_dup_metrics.txt [2025-08-16 21:39:47,906] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M05_marked_dup_metrics.txt [2025-08-16 21:39:47,906] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M05_marked_dup_metrics.txt [2025-08-16 21:39:47,906] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M05_marked_dup_metrics.txt [2025-08-16 21:39:47,913] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M05_marked_dup_metrics.txt [2025-08-16 21:39:47,931] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M05_metrics [2025-08-16 21:39:47,933] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M05_metrics [2025-08-16 21:39:47,933] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M05_metrics [2025-08-16 21:39:47,933] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M05_metrics [2025-08-16 21:39:47,937] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M05_metrics [2025-08-16 21:39:47,994] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M05_hist.pdf [2025-08-16 21:39:48,025] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:48,028] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:48,029] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:48,029] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:48,035] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:48,035] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:48,035] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:48,035] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:48,035] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:48,035] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:48,035] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:48,035] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:48,055] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:48,971] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:48,974] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:48,989] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:48,989] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:48,996] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:48,996] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:48,996] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:48,996] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:48,996] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:48,996] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:48,996] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:48,997] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:49,020] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M05_featureCounts.out [2025-08-16 21:39:49,915] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M05_metrics [2025-08-16 21:39:49,918] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M05_metrics [2025-08-16 21:39:49,922] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M05_metrics [2025-08-16 21:39:49,958] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M09_COMB_2.fq.gz [2025-08-16 21:39:49,960] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M09_COMB_1.fq.gz [2025-08-16 21:39:50,049] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-16 21:39:50,052] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-16 21:39:50,052] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-16 21:39:50,053] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-16 21:39:50,057] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-16 21:39:50,058] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-16 21:39:50,058] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-16 21:39:50,058] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-16 21:39:50,058] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-16 21:39:50,058] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-16 21:39:50,058] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-16 21:39:50,058] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-16 21:39:50,058] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-16 21:39:50,058] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M09_SJ.out.tab [2025-08-16 21:39:51,938] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M09_marked_dup_metrics.txt [2025-08-16 21:39:51,942] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M09_marked_dup_metrics.txt [2025-08-16 21:39:51,943] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M09_marked_dup_metrics.txt [2025-08-16 21:39:51,943] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M09_marked_dup_metrics.txt [2025-08-16 21:39:51,949] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M09_marked_dup_metrics.txt [2025-08-16 21:39:51,964] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M09_metrics [2025-08-16 21:39:51,965] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M09_metrics [2025-08-16 21:39:51,966] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M09_metrics [2025-08-16 21:39:51,966] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M09_metrics [2025-08-16 21:39:51,969] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M09_metrics [2025-08-16 21:39:52,022] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M09_hist.pdf [2025-08-16 21:39:52,049] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:52,053] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:52,053] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:52,053] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:52,060] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:52,060] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:52,060] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:52,060] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:52,060] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:52,060] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:52,060] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:52,060] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:52,080] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:52,996] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:53,000] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:53,000] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:53,000] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:53,005] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:53,006] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:53,006] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:53,006] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:53,006] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:53,006] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:53,006] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:53,006] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:53,024] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M09_featureCounts.out [2025-08-16 21:39:53,920] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M09_metrics [2025-08-16 21:39:53,923] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M09_metrics [2025-08-16 21:39:53,926] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M09_metrics [2025-08-16 21:39:53,965] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M22_COMB_2.fq.gz [2025-08-16 21:39:53,968] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M22_COMB_1.fq.gz [2025-08-16 21:39:54,092] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-16 21:39:54,096] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-16 21:39:54,105] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-16 21:39:54,105] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-16 21:39:54,110] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-16 21:39:54,110] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-16 21:39:54,110] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-16 21:39:54,111] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-16 21:39:54,111] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-16 21:39:54,111] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-16 21:39:54,111] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-16 21:39:54,111] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-16 21:39:54,111] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-16 21:39:54,111] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M22_SJ.out.tab [2025-08-16 21:39:55,811] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M22_marked_dup_metrics.txt [2025-08-16 21:39:55,815] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M22_marked_dup_metrics.txt [2025-08-16 21:39:55,815] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M22_marked_dup_metrics.txt [2025-08-16 21:39:55,815] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M22_marked_dup_metrics.txt [2025-08-16 21:39:55,820] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M22_marked_dup_metrics.txt [2025-08-16 21:39:55,836] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M22_metrics [2025-08-16 21:39:55,838] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M22_metrics [2025-08-16 21:39:55,838] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M22_metrics [2025-08-16 21:39:55,838] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M22_metrics [2025-08-16 21:39:55,842] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M22_metrics [2025-08-16 21:39:55,881] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M22_hist.pdf [2025-08-16 21:39:55,914] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:55,917] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:55,918] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:55,918] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:55,923] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:55,923] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:55,923] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:55,923] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:55,923] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:55,923] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:55,923] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:55,923] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:55,942] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:56,846] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:56,849] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:56,850] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:56,850] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:56,857] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:56,857] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:56,857] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:56,857] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:56,857] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:56,857] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:56,857] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:56,857] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:56,877] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M22_featureCounts.out [2025-08-16 21:39:57,757] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M22_metrics [2025-08-16 21:39:57,759] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M22_metrics [2025-08-16 21:39:57,763] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M22_metrics [2025-08-16 21:39:57,810] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M11_COMB_2.fq.gz [2025-08-16 21:39:57,813] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M11_COMB_1.fq.gz [2025-08-16 21:39:57,932] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-16 21:39:57,936] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-16 21:39:57,937] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-16 21:39:57,937] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-16 21:39:57,941] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-16 21:39:57,942] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-16 21:39:57,942] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-16 21:39:57,942] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-16 21:39:57,942] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-16 21:39:57,942] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-16 21:39:57,942] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-16 21:39:57,942] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-16 21:39:57,942] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-16 21:39:57,942] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M11_SJ.out.tab [2025-08-16 21:39:59,883] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M11_marked_dup_metrics.txt [2025-08-16 21:39:59,943] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M11_marked_dup_metrics.txt [2025-08-16 21:39:59,943] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M11_marked_dup_metrics.txt [2025-08-16 21:39:59,944] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M11_marked_dup_metrics.txt [2025-08-16 21:39:59,952] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M11_marked_dup_metrics.txt [2025-08-16 21:39:59,974] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M11_metrics [2025-08-16 21:39:59,976] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M11_metrics [2025-08-16 21:39:59,976] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M11_metrics [2025-08-16 21:39:59,976] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M11_metrics [2025-08-16 21:39:59,980] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M11_metrics [2025-08-16 21:40:00,031] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M11_hist.pdf [2025-08-16 21:40:00,074] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:00,078] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:00,078] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:00,078] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:00,084] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:00,084] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:00,084] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:00,084] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:00,084] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:00,084] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:00,084] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:00,084] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:00,104] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:01,036] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:01,039] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:01,040] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:01,040] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:01,045] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:01,045] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:01,045] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:01,045] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:01,045] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:01,045] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:01,045] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:01,045] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:01,065] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M11_featureCounts.out [2025-08-16 21:40:01,963] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M11_metrics [2025-08-16 21:40:01,966] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M11_metrics [2025-08-16 21:40:01,971] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M11_metrics [2025-08-16 21:40:02,024] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M26_COMB_2.fq.gz [2025-08-16 21:40:02,026] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M26_COMB_1.fq.gz [2025-08-16 21:40:02,085] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-16 21:40:02,088] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-16 21:40:02,089] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-16 21:40:02,089] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-16 21:40:02,095] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-16 21:40:02,095] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-16 21:40:02,095] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-16 21:40:02,095] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-16 21:40:02,095] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-16 21:40:02,095] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-16 21:40:02,095] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-16 21:40:02,095] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-16 21:40:02,095] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-16 21:40:02,095] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M26_SJ.out.tab [2025-08-16 21:40:04,073] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M26_marked_dup_metrics.txt [2025-08-16 21:40:04,077] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M26_marked_dup_metrics.txt [2025-08-16 21:40:04,078] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M26_marked_dup_metrics.txt [2025-08-16 21:40:04,078] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M26_marked_dup_metrics.txt [2025-08-16 21:40:04,084] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M26_marked_dup_metrics.txt [2025-08-16 21:40:04,097] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M26_hist.pdf [2025-08-16 21:40:04,101] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M26_metrics [2025-08-16 21:40:04,103] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M26_metrics [2025-08-16 21:40:04,103] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M26_metrics [2025-08-16 21:40:04,103] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M26_metrics [2025-08-16 21:40:04,109] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M26_metrics [2025-08-16 21:40:04,202] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:04,206] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:04,207] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:04,207] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:04,213] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:04,213] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:04,213] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:04,213] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:04,213] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:04,213] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:04,214] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:04,214] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:04,234] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:05,149] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:05,152] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:05,153] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:05,153] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:05,159] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:05,159] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:05,159] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:05,159] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:05,159] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:05,159] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:05,159] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:05,160] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:05,179] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M26_featureCounts.out [2025-08-16 21:40:06,063] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M26_metrics [2025-08-16 21:40:06,066] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M26_metrics [2025-08-16 21:40:06,069] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M26_metrics [2025-08-16 21:40:06,109] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M15_COMB_1.fq.gz [2025-08-16 21:40:06,112] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M15_COMB_2.fq.gz [2025-08-16 21:40:06,206] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-16 21:40:06,209] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-16 21:40:06,210] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-16 21:40:06,210] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-16 21:40:06,215] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-16 21:40:06,215] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-16 21:40:06,215] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-16 21:40:06,215] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-16 21:40:06,215] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-16 21:40:06,215] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-16 21:40:06,215] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-16 21:40:06,215] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-16 21:40:06,215] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-16 21:40:06,215] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M15_SJ.out.tab [2025-08-16 21:40:08,190] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M15_marked_dup_metrics.txt [2025-08-16 21:40:08,194] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M15_marked_dup_metrics.txt [2025-08-16 21:40:08,194] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M15_marked_dup_metrics.txt [2025-08-16 21:40:08,194] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M15_marked_dup_metrics.txt [2025-08-16 21:40:08,201] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M15_marked_dup_metrics.txt [2025-08-16 21:40:08,215] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M15_hist.pdf [2025-08-16 21:40:08,218] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M15_metrics [2025-08-16 21:40:08,220] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M15_metrics [2025-08-16 21:40:08,221] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M15_metrics [2025-08-16 21:40:08,221] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M15_metrics [2025-08-16 21:40:08,225] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M15_metrics [2025-08-16 21:40:08,300] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:08,303] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:08,304] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:08,304] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:08,310] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:08,310] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:08,310] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:08,310] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:08,311] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:08,311] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:08,311] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:08,311] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:08,330] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:09,255] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:09,259] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:09,260] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:09,260] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:09,264] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:09,265] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:09,265] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:09,265] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:09,265] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:09,265] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:09,265] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:09,265] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:09,283] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M15_featureCounts.out [2025-08-16 21:40:10,205] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M15_metrics [2025-08-16 21:40:10,226] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M15_metrics [2025-08-16 21:40:10,233] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M15_metrics [2025-08-16 21:40:10,279] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M04_COMB_2.fq.gz [2025-08-16 21:40:10,281] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M04_COMB_1.fq.gz [2025-08-16 21:40:10,395] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-16 21:40:10,399] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-16 21:40:10,400] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-16 21:40:10,400] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-16 21:40:10,405] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-16 21:40:10,405] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-16 21:40:10,405] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-16 21:40:10,405] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-16 21:40:10,405] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-16 21:40:10,405] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-16 21:40:10,405] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-16 21:40:10,405] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-16 21:40:10,405] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-16 21:40:10,405] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M04_SJ.out.tab [2025-08-16 21:40:12,155] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M04_marked_dup_metrics.txt [2025-08-16 21:40:12,158] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M04_marked_dup_metrics.txt [2025-08-16 21:40:12,159] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M04_marked_dup_metrics.txt [2025-08-16 21:40:12,159] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M04_marked_dup_metrics.txt [2025-08-16 21:40:12,163] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M04_marked_dup_metrics.txt [2025-08-16 21:40:12,182] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M04_metrics [2025-08-16 21:40:12,184] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M04_metrics [2025-08-16 21:40:12,184] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M04_metrics [2025-08-16 21:40:12,184] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M04_metrics [2025-08-16 21:40:12,188] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M04_metrics [2025-08-16 21:40:12,221] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M04_hist.pdf [2025-08-16 21:40:12,276] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:12,280] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:12,280] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:12,280] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:12,285] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:12,285] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:12,285] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:12,285] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:12,285] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:12,285] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:12,285] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:12,285] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:12,304] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:13,237] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:13,241] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:13,241] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:13,241] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:13,247] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:13,247] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:13,247] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:13,247] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:13,247] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:13,247] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:13,247] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:13,247] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:13,266] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M04_featureCounts.out [2025-08-16 21:40:14,131] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M04_metrics [2025-08-16 21:40:14,133] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M04_metrics [2025-08-16 21:40:14,136] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M04_metrics [2025-08-16 21:40:14,183] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M19_COMB_1.fq.gz [2025-08-16 21:40:14,186] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M19_COMB_2.fq.gz [2025-08-16 21:40:14,245] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-16 21:40:14,249] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-16 21:40:14,249] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-16 21:40:14,249] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-16 21:40:14,254] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-16 21:40:14,254] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-16 21:40:14,254] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-16 21:40:14,254] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-16 21:40:14,254] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-16 21:40:14,254] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-16 21:40:14,254] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-16 21:40:14,254] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-16 21:40:14,255] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-16 21:40:14,255] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M19_SJ.out.tab [2025-08-16 21:40:16,056] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M19_marked_dup_metrics.txt [2025-08-16 21:40:16,060] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M19_marked_dup_metrics.txt [2025-08-16 21:40:16,060] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M19_marked_dup_metrics.txt [2025-08-16 21:40:16,060] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M19_marked_dup_metrics.txt [2025-08-16 21:40:16,066] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M19_marked_dup_metrics.txt [2025-08-16 21:40:16,084] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M19_hist.pdf [2025-08-16 21:40:16,090] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M19_metrics [2025-08-16 21:40:16,092] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M19_metrics [2025-08-16 21:40:16,093] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M19_metrics [2025-08-16 21:40:16,093] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M19_metrics [2025-08-16 21:40:16,097] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M19_metrics [2025-08-16 21:40:16,218] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:16,222] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:16,222] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:16,222] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:16,229] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:16,229] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:16,229] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:16,229] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:16,229] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:16,229] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:16,229] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:16,229] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:16,249] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:17,171] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:17,175] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:17,175] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:17,175] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:17,181] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:17,181] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:17,181] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:17,181] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:17,181] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:17,181] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:17,181] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:17,181] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:17,201] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M19_featureCounts.out [2025-08-16 21:40:18,091] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M19_metrics [2025-08-16 21:40:18,095] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M19_metrics [2025-08-16 21:40:18,099] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M19_metrics [2025-08-16 21:40:18,138] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M08_COMB_2.fq.gz [2025-08-16 21:40:18,141] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M08_COMB_1.fq.gz [2025-08-16 21:40:18,194] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-16 21:40:18,198] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-16 21:40:18,198] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-16 21:40:18,198] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-16 21:40:18,203] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-16 21:40:18,203] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-16 21:40:18,203] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-16 21:40:18,203] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-16 21:40:18,203] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-16 21:40:18,203] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-16 21:40:18,203] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-16 21:40:18,203] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-16 21:40:18,203] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-16 21:40:18,203] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M08_SJ.out.tab [2025-08-16 21:40:20,018] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M08_marked_dup_metrics.txt [2025-08-16 21:40:20,021] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M08_marked_dup_metrics.txt [2025-08-16 21:40:20,022] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M08_marked_dup_metrics.txt [2025-08-16 21:40:20,022] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M08_marked_dup_metrics.txt [2025-08-16 21:40:20,028] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M08_marked_dup_metrics.txt [2025-08-16 21:40:20,050] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M08_metrics [2025-08-16 21:40:20,053] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M08_metrics [2025-08-16 21:40:20,053] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M08_metrics [2025-08-16 21:40:20,053] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M08_metrics [2025-08-16 21:40:20,059] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M08_metrics [2025-08-16 21:40:20,125] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G246_M08_hist.pdf [2025-08-16 21:40:20,158] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:20,161] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:20,161] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:20,161] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:20,166] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:20,166] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:20,166] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:20,166] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:20,166] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:20,166] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:20,166] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:20,167] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:20,185] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:21,115] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:21,119] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:21,130] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:21,130] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:21,138] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:21,138] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:21,138] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:21,138] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:21,138] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:21,138] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:21,138] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:21,138] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:21,160] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G246_M08_featureCounts.out [2025-08-16 21:40:22,039] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G246_M08_metrics [2025-08-16 21:40:22,041] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G246_M08_metrics [2025-08-16 21:40:22,044] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G246_M08_metrics [2025-08-16 21:40:22,091] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-08-16 21:40:22,093] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-08-16 21:40:22,097] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-08-16 21:40:22,108] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-08-16 21:40:22,110] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-08-16 21:40:22,114] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-08-16 21:40:22,125] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2025-08-16 21:40:22,128] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2025-08-16 21:40:22,150] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2025-08-16 21:40:22,153] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2025-08-16 21:40:22,157] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2025-08-16 21:40:22,168] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2025-08-16 21:40:22,170] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2025-08-16 21:40:22,183] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G246_RNASEQ_G246_M03.o9883587 [2025-08-16 21:40:22,185] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G246_RNASEQ_G246_M03.o9883587 [2025-08-16 21:40:22,189] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G246_RNASEQ_G246_M03.o9883587 [2025-08-16 21:40:22,199] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G246_RNASEQ_G246_M19.o9883603 [2025-08-16 21:40:22,201] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G246_RNASEQ_G246_M19.o9883603 [2025-08-16 21:40:22,205] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G246_RNASEQ_G246_M19.o9883603 [2025-08-16 21:40:22,215] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G246_RNASEQ_G246_M25.o9883609 [2025-08-16 21:40:22,217] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G246_RNASEQ_G246_M25.o9883609 [2025-08-16 21:40:22,221] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G246_RNASEQ_G246_M25.o9883609 [2025-08-16 21:40:22,231] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G246_RNASEQ_G246_M05.o9883589 [2025-08-16 21:40:22,233] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G246_RNASEQ_G246_M05.o9883589 [2025-08-16 21:40:22,237] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G246_RNASEQ_G246_M05.o9883589 [2025-08-16 21:40:22,247] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G246_RNASEQ_G246_M10.o9883594 [2025-08-16 21:40:22,249] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: 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Step_06_G246_RNASEQ_G246_M05.o9884118 [2025-08-16 21:40:41,540] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M05.o9884118 [2025-08-16 21:40:41,540] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M05.o9884118 [2025-08-16 21:40:41,544] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M05.o9884118 [2025-08-16 21:40:41,558] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M31.o9884144 [2025-08-16 21:40:41,560] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M31.o9884144 [2025-08-16 21:40:41,560] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M31.o9884144 [2025-08-16 21:40:41,560] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M31.o9884144 [2025-08-16 21:40:41,563] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M31.o9884144 [2025-08-16 21:40:41,578] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M04.o9884117 [2025-08-16 21:40:41,580] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M04.o9884117 [2025-08-16 21:40:41,580] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M04.o9884117 [2025-08-16 21:40:41,580] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M04.o9884117 [2025-08-16 21:40:41,583] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M04.o9884117 [2025-08-16 21:40:41,597] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M15.o9884128 [2025-08-16 21:40:41,599] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M15.o9884128 [2025-08-16 21:40:41,600] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M15.o9884128 [2025-08-16 21:40:41,600] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M15.o9884128 [2025-08-16 21:40:41,607] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M15.o9884128 [2025-08-16 21:40:41,626] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M20.o9884133 [2025-08-16 21:40:41,628] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M20.o9884133 [2025-08-16 21:40:41,628] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M20.o9884133 [2025-08-16 21:40:41,628] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M20.o9884133 [2025-08-16 21:40:41,632] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M20.o9884133 [2025-08-16 21:40:41,645] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M29.o9884142 [2025-08-16 21:40:41,647] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M29.o9884142 [2025-08-16 21:40:41,647] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M29.o9884142 [2025-08-16 21:40:41,647] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M29.o9884142 [2025-08-16 21:40:41,651] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M29.o9884142 [2025-08-16 21:40:41,665] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M17.o9884130 [2025-08-16 21:40:41,667] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M17.o9884130 [2025-08-16 21:40:41,667] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M17.o9884130 [2025-08-16 21:40:41,667] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M17.o9884130 [2025-08-16 21:40:41,671] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M17.o9884130 [2025-08-16 21:40:41,685] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M11.o9884124 [2025-08-16 21:40:41,686] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M11.o9884124 [2025-08-16 21:40:41,687] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M11.o9884124 [2025-08-16 21:40:41,687] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M11.o9884124 [2025-08-16 21:40:41,690] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M11.o9884124 [2025-08-16 21:40:41,704] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M06.o9884119 [2025-08-16 21:40:41,706] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M06.o9884119 [2025-08-16 21:40:41,706] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M06.o9884119 [2025-08-16 21:40:41,706] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M06.o9884119 [2025-08-16 21:40:41,709] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M06.o9884119 [2025-08-16 21:40:41,723] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M07.o9884120 [2025-08-16 21:40:41,725] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M07.o9884120 [2025-08-16 21:40:41,725] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M07.o9884120 [2025-08-16 21:40:41,725] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M07.o9884120 [2025-08-16 21:40:41,728] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M07.o9884120 [2025-08-16 21:40:41,747] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M14.o9884127 [2025-08-16 21:40:41,751] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M14.o9884127 [2025-08-16 21:40:41,751] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M14.o9884127 [2025-08-16 21:40:41,751] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M14.o9884127 [2025-08-16 21:40:41,756] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M14.o9884127 [2025-08-16 21:40:41,771] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M24.o9884137 [2025-08-16 21:40:41,773] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M24.o9884137 [2025-08-16 21:40:41,773] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M24.o9884137 [2025-08-16 21:40:41,773] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M24.o9884137 [2025-08-16 21:40:41,777] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M24.o9884137 [2025-08-16 21:40:41,791] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M02.o9884115 [2025-08-16 21:40:41,793] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M02.o9884115 [2025-08-16 21:40:41,793] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M02.o9884115 [2025-08-16 21:40:41,793] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M02.o9884115 [2025-08-16 21:40:41,796] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M02.o9884115 [2025-08-16 21:40:41,811] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M16.o9884129 [2025-08-16 21:40:41,812] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M16.o9884129 [2025-08-16 21:40:41,813] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M16.o9884129 [2025-08-16 21:40:41,813] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M16.o9884129 [2025-08-16 21:40:41,816] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M16.o9884129 [2025-08-16 21:40:41,830] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M01.o9884114 [2025-08-16 21:40:41,832] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M01.o9884114 [2025-08-16 21:40:41,832] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M01.o9884114 [2025-08-16 21:40:41,832] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M01.o9884114 [2025-08-16 21:40:41,835] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M01.o9884114 [2025-08-16 21:40:41,853] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M12.o9884125 [2025-08-16 21:40:41,856] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M12.o9884125 [2025-08-16 21:40:41,856] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M12.o9884125 [2025-08-16 21:40:41,856] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M12.o9884125 [2025-08-16 21:40:41,860] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M12.o9884125 [2025-08-16 21:40:41,874] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M22.o9884135 [2025-08-16 21:40:41,876] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M22.o9884135 [2025-08-16 21:40:41,876] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M22.o9884135 [2025-08-16 21:40:41,876] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M22.o9884135 [2025-08-16 21:40:41,883] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G246_RNASEQ_G246_M22.o9884135 [2025-08-16 21:40:41,902] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2025-08-16 21:40:41,904] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2025-08-16 21:40:41,907] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2025-08-16 21:40:41,917] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2025-08-16 21:40:41,919] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2025-08-16 21:40:41,923] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2025-08-16 21:40:41,929] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2025-08-16 21:40:42,012] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2025-08-16 21:40:42,016] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2025-08-16 21:40:42,016] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2025-08-16 21:40:42,016] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2025-08-16 21:40:42,021] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2025-08-16 21:40:42,021] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2025-08-16 21:40:42,021] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2025-08-16 21:40:42,021] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2025-08-16 21:40:42,021] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2025-08-16 21:40:42,021] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2025-08-16 21:40:42,021] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2025-08-16 21:40:42,021] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2025-08-16 21:40:42,021] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2025-08-16 21:40:42,021] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2025-08-16 21:40:42,803] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-16 21:40:42,806] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-16 21:40:42,806] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-16 21:40:42,806] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-16 21:40:42,810] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-16 21:40:42,861] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-16 21:40:42,863] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-16 21:40:42,863] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-16 21:40:42,864] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-16 21:40:42,868] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-16 21:40:45,714] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2025-08-16 21:40:45,726] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2025-08-16 21:40:45,729] multiqc [DEBUG ] No samples found: custom_content [2025-08-16 21:40:45,738] multiqc [DEBUG ] No samples found: ccs [2025-08-16 21:40:45,755] multiqc [DEBUG ] No samples found: ngsderive [2025-08-16 21:40:45,775] multiqc [DEBUG ] No samples found: purple [2025-08-16 21:40:45,783] multiqc [DEBUG ] No samples found: conpair [2025-08-16 21:40:45,803] multiqc [DEBUG ] No samples found: lima [2025-08-16 21:40:45,828] multiqc [DEBUG ] No samples found: peddy [2025-08-16 21:40:45,847] multiqc [DEBUG ] No samples found: somalier [2025-08-16 21:40:45,870] multiqc [DEBUG ] No samples found: methylQA [2025-08-16 21:40:45,927] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2025-08-16 21:40:45,927] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2025-08-16 21:40:45,927] multiqc [DEBUG ] No samples found: mosdepth [2025-08-16 21:40:45,936] multiqc [DEBUG ] No samples found: phantompeakqualtools [2025-08-16 21:40:45,961] multiqc [DEBUG ] No samples found: qualimap [2025-08-16 21:40:45,982] multiqc [DEBUG ] No samples found: preseq [2025-08-16 21:40:46,003] multiqc [DEBUG ] No samples found: quast [2025-08-16 21:40:46,024] multiqc [DEBUG ] No samples found: qorts [2025-08-16 21:40:46,067] multiqc [DEBUG ] No samples found: rna_seqc [2025-08-16 21:40:46,100] multiqc [DEBUG ] No samples found: rockhopper [2025-08-16 21:40:46,115] multiqc [DEBUG ] No samples found: rsem [2025-08-16 21:40:46,164] multiqc.modules.rseqc.rseqc [INFO ] Found 30 infer_experiment reports [2025-08-16 21:40:46,188] multiqc [DEBUG ] No samples found: busco [2025-08-16 21:40:46,217] multiqc [DEBUG ] No samples found: bustools [2025-08-16 21:40:46,241] multiqc [DEBUG ] No samples found: goleft_indexcov [2025-08-16 21:40:46,274] multiqc [DEBUG ] No samples found: gffcompare [2025-08-16 21:40:46,283] multiqc [DEBUG ] No samples found: disambiguate [2025-08-16 21:40:46,311] multiqc [DEBUG ] No samples found: supernova [2025-08-16 21:40:46,415] multiqc [DEBUG ] No samples found: deeptools [2025-08-16 21:40:46,438] multiqc [DEBUG ] No samples found: sargasso [2025-08-16 21:40:46,467] multiqc [DEBUG ] No samples found: verifybamid [2025-08-16 21:40:46,486] multiqc [DEBUG ] No samples found: mirtrace [2025-08-16 21:40:46,495] multiqc [DEBUG ] No samples found: happy [2025-08-16 21:40:46,516] multiqc [DEBUG ] No samples found: mirtop [2025-08-16 21:40:46,536] multiqc [DEBUG ] No samples found: sambamba [2025-08-16 21:40:46,548] multiqc [DEBUG ] No samples found: homer [2025-08-16 21:40:46,580] multiqc [DEBUG ] No samples found: hops [2025-08-16 21:40:46,614] multiqc [DEBUG ] No samples found: macs2 [2025-08-16 21:40:46,623] multiqc [DEBUG ] No samples found: theta2 [2025-08-16 21:40:46,644] multiqc [DEBUG ] No samples found: snpeff [2025-08-16 21:40:46,678] multiqc [DEBUG ] No samples found: gatk [2025-08-16 21:40:46,688] multiqc [DEBUG ] No samples found: htseq [2025-08-16 21:40:46,697] multiqc [DEBUG ] No samples found: bcftools [2025-08-16 21:40:46,719] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M21_sorted [2025-08-16 21:40:46,720] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M10_sorted [2025-08-16 21:40:46,720] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M25_sorted [2025-08-16 21:40:46,721] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M14_sorted [2025-08-16 21:40:46,722] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M29_sorted [2025-08-16 21:40:46,723] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M03_sorted [2025-08-16 21:40:46,724] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M18_sorted [2025-08-16 21:40:46,725] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M07_sorted [2025-08-16 21:40:46,726] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M31_sorted [2025-08-16 21:40:46,727] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M20_sorted [2025-08-16 21:40:46,728] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M24_sorted [2025-08-16 21:40:46,729] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M13_sorted [2025-08-16 21:40:46,730] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M28_sorted [2025-08-16 21:40:46,731] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M02_sorted [2025-08-16 21:40:46,732] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M17_sorted [2025-08-16 21:40:46,733] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M30_sorted [2025-08-16 21:40:46,733] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M23_sorted [2025-08-16 21:40:46,734] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M06_sorted [2025-08-16 21:40:46,735] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M12_sorted [2025-08-16 21:40:46,735] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M27_sorted [2025-08-16 21:40:46,736] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M01_sorted [2025-08-16 21:40:46,737] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M16_sorted [2025-08-16 21:40:46,737] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M05_sorted [2025-08-16 21:40:46,738] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M09_sorted [2025-08-16 21:40:46,738] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M22_sorted [2025-08-16 21:40:46,739] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M11_sorted [2025-08-16 21:40:46,739] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M26_sorted [2025-08-16 21:40:46,740] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M15_sorted [2025-08-16 21:40:46,740] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M04_sorted [2025-08-16 21:40:46,741] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M19_sorted [2025-08-16 21:40:46,741] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G246_M08_sorted [2025-08-16 21:40:46,741] multiqc.modules.featureCounts.feature_counts [INFO ] Found 31 reports [2025-08-16 21:40:46,783] multiqc [DEBUG ] No samples found: fgbio [2025-08-16 21:40:46,895] multiqc [DEBUG ] No samples found: dragen [2025-08-16 21:40:46,920] multiqc [DEBUG ] No samples found: dedup [2025-08-16 21:40:46,938] multiqc [DEBUG ] No samples found: damageprofiler [2025-08-16 21:40:47,181] multiqc [DEBUG ] No samples found: biobambam2 [2025-08-16 21:40:47,200] multiqc [DEBUG ] No samples found: jcvi [2025-08-16 21:40:47,209] multiqc [DEBUG ] No samples found: mtnucratio [2025-08-16 21:40:48,302] multiqc.modules.picard.picard [INFO ] Found 31 InsertSizeMetrics reports [2025-08-16 21:40:48,314] multiqc.modules.picard.picard [INFO ] Found 31 MarkDuplicates reports [2025-08-16 21:40:48,356] multiqc.modules.picard.picard [INFO ] Found 31 RnaSeqMetrics reports [2025-08-16 21:40:48,377] multiqc [DEBUG ] No samples found: vep [2025-08-16 21:40:48,408] multiqc [DEBUG ] No samples found: sentieon [2025-08-16 21:40:48,445] multiqc [DEBUG ] No samples found: prokka [2025-08-16 21:40:48,470] multiqc [DEBUG ] No samples found: qc3C [2025-08-16 21:40:48,498] multiqc [DEBUG ] No samples found: nanostat [2025-08-16 21:40:48,507] multiqc [DEBUG ] No samples found: samblaster [2025-08-16 21:40:48,638] multiqc.modules.samtools.samtools [INFO ] Found 93 flagstat reports [2025-08-16 21:40:48,653] multiqc [DEBUG ] No samples found: sexdeterrmine [2025-08-16 21:40:48,659] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2025-08-16 21:40:48,665] multiqc [DEBUG ] No samples found: bamtools [2025-08-16 21:40:48,674] multiqc [DEBUG ] No samples found: jellyfish [2025-08-16 21:40:48,685] multiqc [DEBUG ] No samples found: vcftools [2025-08-16 21:40:48,691] multiqc [DEBUG ] No samples found: longranger [2025-08-16 21:40:48,705] multiqc [DEBUG ] No samples found: stacks [2025-08-16 21:40:48,739] multiqc [DEBUG ] No samples found: varscan2 [2025-08-16 21:40:48,759] multiqc [DEBUG ] No samples found: snippy [2025-08-16 21:40:48,816] multiqc [DEBUG ] No samples found: bbmap [2025-08-16 21:40:48,848] multiqc [DEBUG ] No samples found: bismark [2025-08-16 21:40:48,872] multiqc [DEBUG ] No samples found: biscuit [2025-08-16 21:40:48,912] multiqc [DEBUG ] No samples found: hicexplorer [2025-08-16 21:40:48,927] multiqc [DEBUG ] No samples found: hicup [2025-08-16 21:40:48,939] multiqc [DEBUG ] No samples found: hicpro [2025-08-16 21:40:48,945] multiqc [DEBUG ] No samples found: salmon [2025-08-16 21:40:48,961] multiqc [DEBUG ] No samples found: kallisto [2025-08-16 21:40:48,984] multiqc [DEBUG ] No samples found: slamdunk [2025-08-16 21:40:52,204] multiqc.modules.star.star [INFO ] Found 31 reports and 31 gene count files [2025-08-16 21:40:52,232] multiqc [DEBUG ] No samples found: hisat2 [2025-08-16 21:40:52,261] multiqc [DEBUG ] No samples found: tophat [2025-08-16 21:40:52,290] multiqc [DEBUG ] No samples found: bowtie2 [2025-08-16 21:40:52,310] multiqc [DEBUG ] No samples found: bowtie1 [2025-08-16 21:40:52,335] multiqc [DEBUG ] No samples found: snpsplit [2025-08-16 21:40:52,355] multiqc [DEBUG ] No samples found: odgi [2025-08-16 21:40:52,364] multiqc [DEBUG ] No samples found: pangolin [2025-08-16 21:40:52,372] multiqc [DEBUG ] No samples found: kat [2025-08-16 21:40:52,378] multiqc [DEBUG ] No samples found: leehom [2025-08-16 21:40:52,410] multiqc [DEBUG ] No samples found: adapterRemoval [2025-08-16 21:40:52,416] multiqc [DEBUG ] No samples found: clipandmerge [2025-08-16 21:40:52,436] multiqc [DEBUG ] No samples found: cutadapt [2025-08-16 21:40:52,444] multiqc [DEBUG ] No samples found: flexbar [2025-08-16 21:40:52,460] multiqc [DEBUG ] No samples found: kaiju [2025-08-16 21:40:52,480] multiqc [DEBUG ] No samples found: kraken [2025-08-16 21:40:52,505] multiqc [DEBUG ] No samples found: malt [2025-08-16 21:40:52,524] multiqc [DEBUG ] No samples found: trimmomatic [2025-08-16 21:40:52,539] multiqc [DEBUG ] No samples found: sickle [2025-08-16 21:40:52,561] multiqc [DEBUG ] No samples found: skewer [2025-08-16 21:40:52,568] multiqc [DEBUG ] No samples found: sortmerna [2025-08-16 21:40:52,574] multiqc [DEBUG ] No samples found: biobloomtools [2025-08-16 21:40:52,591] multiqc [DEBUG ] No samples found: fastq_screen [2025-08-16 21:40:52,622] multiqc [DEBUG ] No samples found: afterqc [2025-08-16 21:40:52,674] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:52,694] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:52,723] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:52,758] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:52,779] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:52,805] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:52,820] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:52,852] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:52,874] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:52,900] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:52,922] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:52,942] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:52,964] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:52,981] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:53,007] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:53,026] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:53,057] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:53,074] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:53,097] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:53,119] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:53,144] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:53,164] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:53,187] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:53,212] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:53,240] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:53,258] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:53,273] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:53,288] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:53,311] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:53,333] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:53,348] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2025-08-16 21:40:53,350] multiqc.modules.fastp.fastp [INFO ] Found 31 reports [2025-08-16 21:41:06,700] multiqc.modules.fastqc.fastqc [INFO ] Found 62 reports [2025-08-16 21:41:06,702] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2025-08-16 21:41:11,170] multiqc [DEBUG ] No samples found: pychopper [2025-08-16 21:41:11,190] multiqc [DEBUG ] No samples found: pycoqc [2025-08-16 21:41:11,218] multiqc [DEBUG ] No samples found: minionqc [2025-08-16 21:41:11,255] multiqc [DEBUG ] No samples found: multivcfanalyzer [2025-08-16 21:41:11,283] multiqc [DEBUG ] No samples found: clusterflow [2025-08-16 21:41:11,302] multiqc [DEBUG ] No samples found: bcl2fastq [2025-08-16 21:41:11,358] multiqc [DEBUG ] No samples found: bclconvert [2025-08-16 21:41:11,374] multiqc [DEBUG ] No samples found: interop [2025-08-16 21:41:11,404] multiqc [DEBUG ] No samples found: ivar [2025-08-16 21:41:11,433] multiqc [DEBUG ] No samples found: flash [2025-08-16 21:41:11,459] multiqc [DEBUG ] No samples found: seqyclean [2025-08-16 21:41:11,469] multiqc [DEBUG ] No samples found: optitype [2025-08-16 21:41:11,621] multiqc [INFO ] Compressing plot data [2025-08-16 21:41:14,753] multiqc [INFO ] Report : multiqc_report.html [2025-08-16 21:41:14,753] multiqc [INFO ] Data : multiqc_data [2025-08-16 21:41:14,753] multiqc [DEBUG ] Moving data file from '/scratch/tmp3ugbtrsw/multiqc_data' to '/projectnb/wax-dk/max/G246_RNASEQ/Scripts/99_final_summary/G246_RNASEQ_multiqc_report/multiqc_data' [2025-08-16 21:41:15,462] multiqc [INFO ] MultiQC complete [2025-08-16 21:41:15,463] multiqc [WARNING] 1 flat-image plot used in the report due to large sample numbers