{
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}
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}
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"Picard": {
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"G245_M09_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M09/aligner/G245_M09_statistics_for_primary_unique_reads.txt",
"G245_M07_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M07/aligner/G245_M07_statistics_for_primary_unique_reads.txt",
"G245_M07_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M07/aligner/G245_M07_statistics_for_all_accepted_reads.txt",
"G245_M07_statistics_for_primary_reads": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M07/aligner/G245_M07_statistics_for_primary_reads.txt",
"G245_M12_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M12/aligner/G245_M12_statistics_for_primary_unique_reads.txt",
"G245_M12_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M12/aligner/G245_M12_statistics_for_all_accepted_reads.txt",
"G245_M12_statistics_for_primary_reads": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M12/aligner/G245_M12_statistics_for_primary_reads.txt",
"G245_M10_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M10/aligner/G245_M10_statistics_for_primary_unique_reads.txt",
"G245_M10_statistics_for_primary_reads": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M10/aligner/G245_M10_statistics_for_primary_reads.txt",
"G245_M10_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M10/aligner/G245_M10_statistics_for_all_accepted_reads.txt",
"G245_M02_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M02/aligner/G245_M02_statistics_for_all_accepted_reads.txt",
"G245_M02_statistics_for_primary_reads": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M02/aligner/G245_M02_statistics_for_primary_reads.txt",
"G245_M02_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M02/aligner/G245_M02_statistics_for_primary_unique_reads.txt",
"G245_M08_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M08/aligner/G245_M08_statistics_for_all_accepted_reads.txt",
"G245_M08_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M08/aligner/G245_M08_statistics_for_primary_unique_reads.txt",
"G245_M08_statistics_for_primary_reads": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M08/aligner/G245_M08_statistics_for_primary_reads.txt",
"G245_M13_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M13/aligner/G245_M13_statistics_for_primary_unique_reads.txt",
"G245_M13_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M13/aligner/G245_M13_statistics_for_all_accepted_reads.txt",
"G245_M13_statistics_for_primary_reads": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M13/aligner/G245_M13_statistics_for_primary_reads.txt",
"G245_M05_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M05/aligner/G245_M05_statistics_for_all_accepted_reads.txt",
"G245_M05_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M05/aligner/G245_M05_statistics_for_primary_unique_reads.txt",
"G245_M05_statistics_for_primary_reads": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M05/aligner/G245_M05_statistics_for_primary_reads.txt",
"G245_M03_statistics_for_primary_reads": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M03/aligner/G245_M03_statistics_for_primary_reads.txt",
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"G245_M03_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M03/aligner/G245_M03_statistics_for_all_accepted_reads.txt"
}
},
"STAR": {
"SummaryLog": {
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"G245_M14_G245_M14": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M14/aligner/G245_M14_G245_M14_Log.final.out",
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"G245_M11_G245_M11": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M11/aligner/G245_M11_G245_M11_Log.final.out",
"G245_M04_G245_M04": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M04/aligner/G245_M04_G245_M04_Log.final.out",
"G245_M15_G245_M15": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M15/aligner/G245_M15_G245_M15_Log.final.out",
"G245_M01_G245_M01": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M01/aligner/G245_M01_G245_M01_Log.final.out",
"G245_M09_G245_M09": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M09/aligner/G245_M09_G245_M09_Log.final.out",
"G245_M07_G245_M07": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M07/aligner/G245_M07_G245_M07_Log.final.out",
"G245_M12_G245_M12": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M12/aligner/G245_M12_G245_M12_Log.final.out",
"G245_M10_G245_M10": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M10/aligner/G245_M10_G245_M10_Log.final.out",
"G245_M02_G245_M02": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M02/aligner/G245_M02_G245_M02_Log.final.out",
"G245_M08_G245_M08": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M08/aligner/G245_M08_G245_M08_Log.final.out",
"G245_M13_G245_M13": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M13/aligner/G245_M13_G245_M13_Log.final.out",
"G245_M05_G245_M05": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M05/aligner/G245_M05_G245_M05_Log.final.out",
"G245_M03_G245_M03": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M03/aligner/G245_M03_G245_M03_Log.final.out"
},
"ReadsPerGene": {
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"G245_M14": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M14/aligner/G245_M14_ReadsPerGene.out.tab",
"G245_M06": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M06/aligner/G245_M06_ReadsPerGene.out.tab",
"G245_M11": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M11/aligner/G245_M11_ReadsPerGene.out.tab",
"G245_M04": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M04/aligner/G245_M04_ReadsPerGene.out.tab",
"G245_M15": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M15/aligner/G245_M15_ReadsPerGene.out.tab",
"G245_M01": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M01/aligner/G245_M01_ReadsPerGene.out.tab",
"G245_M09": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M09/aligner/G245_M09_ReadsPerGene.out.tab",
"G245_M07": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M07/aligner/G245_M07_ReadsPerGene.out.tab",
"G245_M12": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M12/aligner/G245_M12_ReadsPerGene.out.tab",
"G245_M10": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M10/aligner/G245_M10_ReadsPerGene.out.tab",
"G245_M02": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M02/aligner/G245_M02_ReadsPerGene.out.tab",
"G245_M08": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M08/aligner/G245_M08_ReadsPerGene.out.tab",
"G245_M13": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M13/aligner/G245_M13_ReadsPerGene.out.tab",
"G245_M05": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M05/aligner/G245_M05_ReadsPerGene.out.tab",
"G245_M03": "/projectnb/wax-dk/max/G245_RNASEQ/SAMPLES/G245_M03/aligner/G245_M03_ReadsPerGene.out.tab"
}
},
"fastp": {
"all_sections": {
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"G245_M01_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M01_FASTP/fastp.json",
"G245_M06_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M06_FASTP/fastp.json",
"G245_M12_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M12_FASTP/fastp.json",
"G245_M09_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M09_FASTP/fastp.json",
"G245_M08_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M08_FASTP/fastp.json",
"G245_M07_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M07_FASTP/fastp.json",
"G245_M16_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M16_FASTP/fastp.json",
"G245_M02_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M02_FASTP/fastp.json",
"G245_M15_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M15_FASTP/fastp.json",
"G245_M10_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M10_FASTP/fastp.json",
"G245_M13_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M13_FASTP/fastp.json",
"G245_M05_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M05_FASTP/fastp.json",
"G245_M11_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M11_FASTP/fastp.json",
"G245_M14_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M14_FASTP/fastp.json",
"G245_M03_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M03_FASTP/fastp.json"
}
},
"FastQC": {
"all_sections": {
"G245_M08_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M08_FASTQC_R1/fastqc_data.txt",
"G245_M14_COMB_2": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M14_FASTQC_R2/fastqc_data.txt",
"G245_M07_COMB_2": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M07_FASTQC_R2/fastqc_data.txt",
"G245_M01_COMB_2": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M01_FASTQC_R2/fastqc_data.txt",
"G245_M16_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M16_FASTQC_R1/fastqc_data.txt",
"G245_M05_COMB_2": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M05_FASTQC_R2/fastqc_data.txt",
"G245_M12_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M12_FASTQC_R1/fastqc_data.txt",
"G245_M15_COMB_2": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M15_FASTQC_R2/fastqc_data.txt",
"G245_M06_COMB_2": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M06_FASTQC_R2/fastqc_data.txt",
"G245_M12_COMB_2": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M12_FASTQC_R2/fastqc_data.txt",
"G245_M09_COMB_2": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M09_FASTQC_R2/fastqc_data.txt",
"G245_M09_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M09_FASTQC_R1/fastqc_data.txt",
"G245_M10_COMB_2": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M10_FASTQC_R2/fastqc_data.txt",
"G245_M13_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M13_FASTQC_R1/fastqc_data.txt",
"G245_M14_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M14_FASTQC_R1/fastqc_data.txt",
"G245_M16_COMB_2": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M16_FASTQC_R2/fastqc_data.txt",
"G245_M04_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M04_FASTQC_R1/fastqc_data.txt",
"G245_M10_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M10_FASTQC_R1/fastqc_data.txt",
"G245_M07_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M07_FASTQC_R1/fastqc_data.txt",
"G245_M03_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M03_FASTQC_R1/fastqc_data.txt",
"G245_M06_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M06_FASTQC_R1/fastqc_data.txt",
"G245_M01_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M01_FASTQC_R1/fastqc_data.txt",
"G245_M11_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M11_FASTQC_R1/fastqc_data.txt",
"G245_M03_COMB_2": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M03_FASTQC_R2/fastqc_data.txt",
"G245_M15_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M15_FASTQC_R1/fastqc_data.txt",
"G245_M02_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M02_FASTQC_R1/fastqc_data.txt",
"G245_M05_COMB_1": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M05_FASTQC_R1/fastqc_data.txt",
"G245_M11_COMB_2": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M11_FASTQC_R2/fastqc_data.txt",
"G245_M08_COMB_2": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M08_FASTQC_R2/fastqc_data.txt",
"G245_M02_COMB_2": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M02_FASTQC_R2/fastqc_data.txt",
"G245_M04_COMB_2": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M04_FASTQC_R2/fastqc_data.txt",
"G245_M13_COMB_2": "/projectnb2/wax-dk/max/G245_RNASEQ/Scripts/03_FASTQC/Job_Summary/G245_M13_FASTQC_R2/fastqc_data.txt"
}
}
},
"report_general_stats_data": [
{
"G245_M16_sorted": {
"Total": 13181095,
"Assigned": 12333615,
"Unassigned_Ambiguity": 0,
"Unassigned_MultiMapping": 0,
"Unassigned_NoFeatures": 847480,
"Unassigned_Unmapped": 0,
"Unassigned_MappingQuality": 0,
"Unassigned_FragmentLength": 0,
"Unassigned_Chimera": 0,
"Unassigned_Secondary": 0,
"Unassigned_Nonjunction": 0,
"Unassigned_Duplicate": 0,
"percent_assigned": 93.57048864301485
},
"G245_M14_sorted": {
"Total": 14487965,
"Assigned": 13599228,
"Unassigned_Ambiguity": 0,
"Unassigned_MultiMapping": 0,
"Unassigned_NoFeatures": 888737,
"Unassigned_Unmapped": 0,
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"Unassigned_FragmentLength": 0,
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"Unassigned_Duplicate": 0,
"percent_assigned": 93.86568783124476
},
"G245_M06_sorted": {
"Total": 12921143,
"Assigned": 12185828,
"Unassigned_Ambiguity": 0,
"Unassigned_MultiMapping": 0,
"Unassigned_NoFeatures": 735315,
"Unassigned_Unmapped": 0,
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"Unassigned_Nonjunction": 0,
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"percent_assigned": 94.30921088018297
},
"G245_M11_sorted": {
"Total": 12836568,
"Assigned": 12181701,
"Unassigned_Ambiguity": 0,
"Unassigned_MultiMapping": 0,
"Unassigned_NoFeatures": 654867,
"Unassigned_Unmapped": 0,
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"Unassigned_FragmentLength": 0,
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"Unassigned_Nonjunction": 0,
"Unassigned_Duplicate": 0,
"percent_assigned": 94.8984261213745
},
"G232_M10_sorted": {
"Total": 15370258,
"Assigned": 13975057,
"Unassigned_Ambiguity": 0,
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"Unassigned_NoFeatures": 1395201,
"Unassigned_Unmapped": 0,
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"Unassigned_Duplicate": 0,
"percent_assigned": 90.92272231214336
},
"G245_M04_sorted": {
"Total": 14118625,
"Assigned": 13072559,
"Unassigned_Ambiguity": 0,
"Unassigned_MultiMapping": 0,
"Unassigned_NoFeatures": 1046066,
"Unassigned_Unmapped": 0,
"Unassigned_MappingQuality": 0,
"Unassigned_FragmentLength": 0,
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"Unassigned_Nonjunction": 0,
"Unassigned_Duplicate": 0,
"percent_assigned": 92.59087906931447
},
"G232_M14_sorted": {
"Total": 11942487,
"Assigned": 10508123,
"Unassigned_Ambiguity": 0,
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"Unassigned_NoFeatures": 1434364,
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"Unassigned_FragmentLength": 0,
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"percent_assigned": 87.98940287730687
},
"G245_M15_sorted": {
"Total": 11387370,
"Assigned": 10615023,
"Unassigned_Ambiguity": 0,
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"Unassigned_NoFeatures": 772347,
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"id": "picard_rna_coverage",
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