[2025-08-04 08:49:01,172] multiqc [DEBUG ] This is MultiQC v1.11 [2025-08-04 08:49:01,173] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2025-08-04 08:49:01,173] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2025-08-04 08:49:01,173] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2025-08-04 08:49:01,176] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/G221_RNASEQ_XE96/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2025-08-04 08:49:01,176] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2025-08-04 08:49:01,176] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2025-08-04 08:49:01,176] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G221_RNASEQ_XE96/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G221_RNASEQ_XE96/SAMPLES /projectnb2/wax-dk/max/G221_RNASEQ_XE96/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G221_RNASEQ_XE96/Scripts/06_CollectMetrics/ [2025-08-04 08:49:02,255] multiqc [WARNING] MultiQC Version v1.30 now available! [2025-08-04 08:49:02,255] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G221_RNASEQ_XE96/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G221_RNASEQ_XE96/SAMPLES /projectnb2/wax-dk/max/G221_RNASEQ_XE96/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G221_RNASEQ_XE96/Scripts/06_CollectMetrics/ [2025-08-04 08:49:02,255] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G221_RNASEQ_XE96/Scripts/99_final_summary/G221_RNASEQ_XE96_new20250606_multiqc_report [2025-08-04 08:49:02,255] multiqc [DEBUG ] Template : default [2025-08-04 08:49:02,255] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2025-08-04 08:49:02,256] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2025-08-04 08:49:02,256] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmppmz772et [2025-08-04 08:49:02,667] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G221_RNASEQ_XE96/SAMPLES [2025-08-04 08:49:02,667] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G221_RNASEQ_XE96/Scripts/03_FASTQC [2025-08-04 08:49:02,667] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G221_RNASEQ_XE96/Scripts/06_CollectMetrics [2025-08-04 08:49:05,786] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M09_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:05,787] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M09_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:05,970] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M09_metrics [2025-08-04 08:49:05,973] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M09_metrics [2025-08-04 08:49:05,974] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M09_metrics [2025-08-04 08:49:05,974] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M09_metrics [2025-08-04 08:49:05,980] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M09_metrics [2025-08-04 08:49:06,039] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M09_hist.pdf [2025-08-04 08:49:06,067] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:06,071] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:06,072] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:06,072] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:06,077] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:06,077] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:06,077] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:06,077] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:06,077] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:06,077] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:06,077] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:06,077] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:06,145] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:07,072] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:07,076] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:07,088] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:07,088] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:07,095] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:07,095] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:07,095] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:07,095] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:07,095] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:07,096] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:07,096] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:07,096] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:07,120] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M09_featureCounts.out [2025-08-04 08:49:08,016] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M09_metrics [2025-08-04 08:49:08,020] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M09_metrics [2025-08-04 08:49:08,028] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M09_metrics [2025-08-04 08:49:08,075] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M07_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:08,075] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M07_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:08,220] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M07_metrics [2025-08-04 08:49:08,224] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M07_metrics [2025-08-04 08:49:08,224] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M07_metrics [2025-08-04 08:49:08,224] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M07_metrics [2025-08-04 08:49:08,230] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M07_metrics [2025-08-04 08:49:08,289] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M07_hist.pdf [2025-08-04 08:49:08,335] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:08,339] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:08,339] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:08,339] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:08,346] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:08,346] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:08,346] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:08,346] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:08,346] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:08,346] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:08,346] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:08,346] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:08,367] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:09,284] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:09,288] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:09,288] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:09,288] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:09,295] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:09,295] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:09,295] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:09,295] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:09,295] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:09,295] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:09,295] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:09,295] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:09,315] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M07_featureCounts.out [2025-08-04 08:49:10,187] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M07_metrics [2025-08-04 08:49:10,189] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M07_metrics [2025-08-04 08:49:10,194] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M07_metrics [2025-08-04 08:49:10,235] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M17_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:10,236] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M17_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:10,354] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M17_hist.pdf [2025-08-04 08:49:10,368] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M17_metrics [2025-08-04 08:49:10,371] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M17_metrics [2025-08-04 08:49:10,371] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M17_metrics [2025-08-04 08:49:10,371] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M17_metrics [2025-08-04 08:49:10,377] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M17_metrics [2025-08-04 08:49:10,475] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:10,479] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:10,479] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:10,480] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:10,486] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:10,486] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:10,486] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:10,486] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:10,486] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:10,486] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:10,486] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:10,487] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:10,506] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:11,426] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:11,430] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:11,430] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:11,430] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:11,437] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:11,437] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:11,438] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:11,438] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:11,438] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:11,438] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:11,438] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:11,438] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:11,458] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M17_featureCounts.out [2025-08-04 08:49:12,372] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M17_metrics [2025-08-04 08:49:12,375] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M17_metrics [2025-08-04 08:49:12,395] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M17_metrics [2025-08-04 08:49:12,441] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M27_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:12,441] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M27_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:12,572] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M27_metrics [2025-08-04 08:49:12,576] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M27_metrics [2025-08-04 08:49:12,576] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M27_metrics [2025-08-04 08:49:12,576] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M27_metrics [2025-08-04 08:49:12,582] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M27_metrics [2025-08-04 08:49:12,670] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M27_hist.pdf [2025-08-04 08:49:12,727] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:12,731] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:12,731] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:12,731] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:12,737] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:12,737] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:12,737] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:12,737] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:12,737] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:12,737] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:12,737] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:12,737] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:12,756] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:13,670] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:13,674] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:13,675] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:13,675] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:13,681] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:13,681] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:13,681] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:13,681] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:13,681] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:13,681] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:13,681] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:13,681] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:13,701] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M27_featureCounts.out [2025-08-04 08:49:14,568] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M27_metrics [2025-08-04 08:49:14,571] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M27_metrics [2025-08-04 08:49:14,575] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M27_metrics [2025-08-04 08:49:14,624] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M06A_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:14,624] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M06A_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:14,759] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M06A_metrics [2025-08-04 08:49:14,763] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M06A_metrics [2025-08-04 08:49:14,763] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M06A_metrics [2025-08-04 08:49:14,763] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M06A_metrics [2025-08-04 08:49:14,769] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M06A_metrics [2025-08-04 08:49:14,833] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M06A_hist.pdf [2025-08-04 08:49:14,887] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:14,891] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:14,892] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:14,892] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:14,897] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:14,897] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:14,897] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:14,897] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:14,897] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:14,897] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:14,897] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:14,897] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:14,917] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:15,843] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:15,847] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:15,848] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:15,848] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:15,854] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:15,854] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:15,854] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:15,854] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:15,854] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:15,855] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:15,855] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:15,855] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:15,874] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M06A_featureCounts.out [2025-08-04 08:49:16,760] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M06A_metrics [2025-08-04 08:49:16,763] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M06A_metrics [2025-08-04 08:49:16,770] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M06A_metrics [2025-08-04 08:49:16,823] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M37_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:16,826] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M37_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:16,938] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M37_hist.pdf [2025-08-04 08:49:16,963] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M37_metrics [2025-08-04 08:49:16,967] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M37_metrics [2025-08-04 08:49:16,967] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M37_metrics [2025-08-04 08:49:16,968] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M37_metrics [2025-08-04 08:49:16,974] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M37_metrics [2025-08-04 08:49:17,024] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:17,027] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:17,028] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:17,028] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:17,034] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:17,034] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:17,034] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:17,034] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:17,034] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:17,034] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:17,034] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:17,034] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:17,054] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:17,977] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:17,981] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:17,996] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:17,996] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:18,003] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:18,003] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:18,003] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:18,003] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:18,003] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:18,003] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:18,004] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:18,004] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:18,026] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M37_featureCounts.out [2025-08-04 08:49:18,921] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M37_metrics [2025-08-04 08:49:18,925] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M37_metrics [2025-08-04 08:49:18,930] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M37_metrics [2025-08-04 08:49:18,987] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M47_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:18,990] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M47_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:19,095] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M47_hist.pdf [2025-08-04 08:49:19,120] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M47_metrics [2025-08-04 08:49:19,124] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M47_metrics [2025-08-04 08:49:19,125] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M47_metrics [2025-08-04 08:49:19,125] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M47_metrics [2025-08-04 08:49:19,130] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M47_metrics [2025-08-04 08:49:19,223] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:19,227] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:19,227] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:19,227] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:19,233] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:19,233] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:19,233] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:19,233] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:19,233] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:19,233] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:19,233] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:19,233] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:19,252] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:20,161] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:20,165] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:20,165] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:20,165] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:20,170] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:20,170] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:20,170] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:20,170] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:20,170] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:20,170] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:20,170] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:20,170] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:20,190] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M47_featureCounts.out [2025-08-04 08:49:21,058] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M47_metrics [2025-08-04 08:49:21,062] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M47_metrics [2025-08-04 08:49:21,067] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M47_metrics [2025-08-04 08:49:21,112] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M25_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:21,112] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M25_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:21,234] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M25_metrics [2025-08-04 08:49:21,237] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M25_metrics [2025-08-04 08:49:21,238] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M25_metrics [2025-08-04 08:49:21,238] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M25_metrics [2025-08-04 08:49:21,242] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M25_metrics [2025-08-04 08:49:21,332] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M25_hist.pdf [2025-08-04 08:49:21,362] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:21,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:21,367] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:21,367] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:21,373] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:21,373] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:21,373] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:21,373] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:21,373] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:21,373] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:21,373] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:21,373] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:21,394] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:22,329] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:22,333] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:22,333] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:22,333] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:22,340] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:22,340] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:22,340] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:22,340] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:22,340] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:22,340] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:22,340] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:22,340] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:22,361] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M25_featureCounts.out [2025-08-04 08:49:23,280] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M25_metrics [2025-08-04 08:49:23,283] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M25_metrics [2025-08-04 08:49:23,311] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M25_metrics [2025-08-04 08:49:23,361] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M35_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:23,364] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M35_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:23,488] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M35_hist.pdf [2025-08-04 08:49:23,511] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M35_metrics [2025-08-04 08:49:23,515] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M35_metrics [2025-08-04 08:49:23,515] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M35_metrics [2025-08-04 08:49:23,515] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M35_metrics [2025-08-04 08:49:23,520] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M35_metrics [2025-08-04 08:49:23,583] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:23,587] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:23,587] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:23,588] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:23,594] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:23,594] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:23,594] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:23,594] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:23,595] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:23,595] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:23,595] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:23,595] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:23,614] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:24,527] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:24,530] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:24,531] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:24,531] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:24,535] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:24,535] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:24,535] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:24,535] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:24,536] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:24,536] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:24,536] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:24,536] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:24,553] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M35_featureCounts.out [2025-08-04 08:49:25,450] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M35_metrics [2025-08-04 08:49:25,454] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M35_metrics [2025-08-04 08:49:25,459] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M35_metrics [2025-08-04 08:49:25,511] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M45_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:25,511] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M45_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:25,660] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M45_metrics [2025-08-04 08:49:25,664] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M45_metrics [2025-08-04 08:49:25,664] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M45_metrics [2025-08-04 08:49:25,664] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M45_metrics [2025-08-04 08:49:25,671] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M45_metrics [2025-08-04 08:49:25,703] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M45_hist.pdf [2025-08-04 08:49:25,730] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:25,734] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:25,734] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:25,734] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:25,740] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:25,740] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:25,740] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:25,740] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:25,740] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:25,740] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:25,740] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:25,740] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:25,760] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:26,683] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:26,687] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:26,688] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:26,688] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:26,695] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:26,695] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:26,695] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:26,695] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:26,695] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:26,695] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:26,696] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:26,696] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:26,716] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M45_featureCounts.out [2025-08-04 08:49:27,606] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M45_metrics [2025-08-04 08:49:27,610] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M45_metrics [2025-08-04 08:49:27,615] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M45_metrics [2025-08-04 08:49:27,657] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M55_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:27,657] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M55_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:27,774] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M55_hist.pdf [2025-08-04 08:49:27,798] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M55_metrics [2025-08-04 08:49:27,802] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M55_metrics [2025-08-04 08:49:27,802] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M55_metrics [2025-08-04 08:49:27,802] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M55_metrics [2025-08-04 08:49:27,807] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M55_metrics [2025-08-04 08:49:27,943] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:27,947] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:27,948] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:27,948] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:27,954] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:27,954] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:27,954] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:27,954] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:27,954] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:27,954] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:27,954] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:27,954] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:27,973] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:28,879] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:28,883] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:28,896] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:28,896] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:28,903] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:28,903] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:28,903] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:28,903] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:28,903] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:28,904] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:28,904] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:28,904] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:28,927] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M55_featureCounts.out [2025-08-04 08:49:29,788] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M55_metrics [2025-08-04 08:49:29,790] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M55_metrics [2025-08-04 08:49:29,794] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M55_metrics [2025-08-04 08:49:29,841] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M65_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:29,842] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M65_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:29,985] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M65_metrics [2025-08-04 08:49:29,989] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M65_metrics [2025-08-04 08:49:29,989] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M65_metrics [2025-08-04 08:49:29,989] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M65_metrics [2025-08-04 08:49:29,996] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M65_metrics [2025-08-04 08:49:30,040] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M65_hist.pdf [2025-08-04 08:49:30,095] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:30,099] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:30,100] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:30,100] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:30,107] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:30,107] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:30,107] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:30,107] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:30,107] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:30,107] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:30,107] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:30,107] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:30,128] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:31,041] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:31,045] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:31,045] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:31,046] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:31,050] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:31,050] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:31,050] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:31,051] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:31,051] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:31,051] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:31,051] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:31,051] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:31,071] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M65_featureCounts.out [2025-08-04 08:49:31,949] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M65_metrics [2025-08-04 08:49:31,951] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M65_metrics [2025-08-04 08:49:31,956] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M65_metrics [2025-08-04 08:49:32,003] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M63_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:32,003] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M63_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:32,171] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M63_metrics [2025-08-04 08:49:32,175] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M63_metrics [2025-08-04 08:49:32,175] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M63_metrics [2025-08-04 08:49:32,175] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M63_metrics [2025-08-04 08:49:32,181] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M63_metrics [2025-08-04 08:49:32,215] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M63_hist.pdf [2025-08-04 08:49:32,271] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:32,276] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:32,276] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:32,276] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:32,282] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:32,282] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:32,282] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:32,282] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:32,282] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:32,282] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:32,282] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:32,282] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:32,302] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:33,223] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:33,227] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:33,228] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:33,228] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:33,233] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:33,234] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:33,234] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:33,234] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:33,234] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:33,234] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:33,234] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:33,234] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:33,253] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M63_featureCounts.out [2025-08-04 08:49:34,119] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M63_metrics [2025-08-04 08:49:34,122] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M63_metrics [2025-08-04 08:49:34,143] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M63_metrics [2025-08-04 08:49:34,190] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M02_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:34,193] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M02_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:34,356] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M02_metrics [2025-08-04 08:49:34,359] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M02_metrics [2025-08-04 08:49:34,360] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M02_metrics [2025-08-04 08:49:34,360] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M02_metrics [2025-08-04 08:49:34,367] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M02_metrics [2025-08-04 08:49:34,429] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M02_hist.pdf [2025-08-04 08:49:34,458] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:34,462] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:34,463] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:34,463] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:34,469] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:34,469] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:34,469] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:34,470] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:34,470] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:34,470] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:34,470] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:34,470] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:34,490] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:35,410] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:35,414] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:35,414] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:35,414] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:35,421] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:35,421] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:35,421] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:35,421] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:35,421] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:35,421] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:35,421] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:35,421] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:35,441] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M02_featureCounts.out [2025-08-04 08:49:36,321] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M02_metrics [2025-08-04 08:49:36,325] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M02_metrics [2025-08-04 08:49:36,330] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M02_metrics [2025-08-04 08:49:36,381] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M12_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:36,384] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M12_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:36,553] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M12_metrics [2025-08-04 08:49:36,556] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M12_metrics [2025-08-04 08:49:36,557] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M12_metrics [2025-08-04 08:49:36,557] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M12_metrics [2025-08-04 08:49:36,564] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M12_metrics [2025-08-04 08:49:36,625] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M12_hist.pdf [2025-08-04 08:49:36,681] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:36,685] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:36,685] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:36,685] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:36,692] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:36,692] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:36,692] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:36,692] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:36,692] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:36,692] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:36,692] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:36,692] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:36,714] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:37,637] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:37,641] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:37,642] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:37,642] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:37,648] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:37,648] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:37,648] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:37,648] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:37,648] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:37,648] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:37,648] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:37,648] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:37,666] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M12_featureCounts.out [2025-08-04 08:49:38,554] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M12_metrics [2025-08-04 08:49:38,559] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M12_metrics [2025-08-04 08:49:38,564] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M12_metrics [2025-08-04 08:49:38,613] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M22_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:38,615] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M22_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:38,756] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M22_hist.pdf [2025-08-04 08:49:38,778] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M22_metrics [2025-08-04 08:49:38,782] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M22_metrics [2025-08-04 08:49:38,783] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M22_metrics [2025-08-04 08:49:38,783] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M22_metrics [2025-08-04 08:49:38,788] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M22_metrics [2025-08-04 08:49:38,883] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:38,887] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:38,888] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:38,888] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:38,894] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:38,894] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:38,894] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:38,894] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:38,894] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:38,894] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:38,894] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:38,895] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:38,919] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:39,855] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:39,859] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:39,871] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:39,871] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:39,878] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:39,878] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:39,878] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:39,878] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:39,878] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:39,878] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:39,878] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:39,878] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:39,936] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M22_featureCounts.out [2025-08-04 08:49:40,855] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M22_metrics [2025-08-04 08:49:40,858] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M22_metrics [2025-08-04 08:49:40,861] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M22_metrics [2025-08-04 08:49:40,894] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M32_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:40,895] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M32_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:41,045] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M32_metrics [2025-08-04 08:49:41,049] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M32_metrics [2025-08-04 08:49:41,049] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M32_metrics [2025-08-04 08:49:41,050] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M32_metrics [2025-08-04 08:49:41,055] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M32_metrics [2025-08-04 08:49:41,079] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M32_hist.pdf [2025-08-04 08:49:41,112] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:41,117] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:41,117] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:41,118] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:41,123] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:41,123] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:41,123] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:41,123] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:41,123] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:41,124] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:41,124] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:41,124] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:41,144] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:42,099] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:42,103] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:42,104] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:42,104] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:42,111] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:42,111] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:42,111] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:42,111] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:42,111] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:42,111] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:42,111] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:42,111] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:42,132] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M32_featureCounts.out [2025-08-04 08:49:43,028] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M32_metrics [2025-08-04 08:49:43,031] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M32_metrics [2025-08-04 08:49:43,036] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M32_metrics [2025-08-04 08:49:43,100] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M10_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:43,103] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M10_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:43,272] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M10_metrics [2025-08-04 08:49:43,276] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M10_metrics [2025-08-04 08:49:43,276] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M10_metrics [2025-08-04 08:49:43,276] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M10_metrics [2025-08-04 08:49:43,283] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M10_metrics [2025-08-04 08:49:43,359] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M10_hist.pdf [2025-08-04 08:49:43,400] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:43,403] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:43,403] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:43,403] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:43,407] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:43,407] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:43,407] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:43,407] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:43,407] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:43,407] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:43,407] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:43,407] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:43,434] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:44,365] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:44,370] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:44,370] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:44,370] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:44,376] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:44,376] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:44,376] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:44,376] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:44,376] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:44,376] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:44,376] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:44,376] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:44,396] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M10_featureCounts.out [2025-08-04 08:49:45,289] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M10_metrics [2025-08-04 08:49:45,292] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M10_metrics [2025-08-04 08:49:45,298] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M10_metrics [2025-08-04 08:49:45,340] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M20_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:45,342] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M20_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:45,516] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M20_metrics [2025-08-04 08:49:45,520] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M20_metrics [2025-08-04 08:49:45,520] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M20_metrics [2025-08-04 08:49:45,520] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M20_metrics [2025-08-04 08:49:45,527] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M20_metrics [2025-08-04 08:49:45,594] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M20_hist.pdf [2025-08-04 08:49:45,622] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:45,626] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:45,626] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:45,626] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:45,632] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:45,632] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:45,632] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:45,632] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:45,632] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:45,632] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:45,632] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:45,632] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:45,651] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:46,576] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:46,580] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:46,581] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:46,581] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:46,587] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:46,587] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:46,588] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:46,588] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:46,588] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:46,588] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:46,588] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:46,588] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:46,607] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M20_featureCounts.out [2025-08-04 08:49:47,504] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M20_metrics [2025-08-04 08:49:47,508] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M20_metrics [2025-08-04 08:49:47,513] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M20_metrics [2025-08-04 08:49:47,557] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M30_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:47,560] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M30_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:47,741] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M30_metrics [2025-08-04 08:49:47,745] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M30_metrics [2025-08-04 08:49:47,745] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M30_metrics [2025-08-04 08:49:47,745] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M30_metrics [2025-08-04 08:49:47,752] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M30_metrics [2025-08-04 08:49:47,778] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M30_hist.pdf [2025-08-04 08:49:47,837] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:47,841] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:47,842] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:47,842] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:47,848] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:47,848] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:47,848] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:47,848] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:47,848] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:47,848] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:47,848] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:47,848] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:47,868] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:48,805] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:48,808] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:48,809] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:48,809] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:48,814] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:48,815] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:48,815] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:48,815] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:48,815] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:48,815] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:48,815] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:48,815] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:48,835] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M30_featureCounts.out [2025-08-04 08:49:49,725] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M30_metrics [2025-08-04 08:49:49,727] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M30_metrics [2025-08-04 08:49:49,730] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M30_metrics [2025-08-04 08:49:49,773] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M40_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:49,776] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M40_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:49,892] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M40_hist.pdf [2025-08-04 08:49:49,915] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M40_metrics [2025-08-04 08:49:49,918] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M40_metrics [2025-08-04 08:49:49,919] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M40_metrics [2025-08-04 08:49:49,919] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M40_metrics [2025-08-04 08:49:49,924] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M40_metrics [2025-08-04 08:49:49,994] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:49,998] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:49,999] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:49,999] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:50,004] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:50,004] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:50,004] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:50,004] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:50,004] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:50,004] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:50,004] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:50,004] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:50,024] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:50,953] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:50,957] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:50,971] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:50,971] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:50,979] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:50,979] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:50,979] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:50,979] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:50,979] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:50,979] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:50,979] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:50,980] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:51,002] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M40_featureCounts.out [2025-08-04 08:49:51,864] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M40_metrics [2025-08-04 08:49:51,868] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M40_metrics [2025-08-04 08:49:51,872] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M40_metrics [2025-08-04 08:49:51,922] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M50_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:51,925] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M50_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:52,056] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M50_hist.pdf [2025-08-04 08:49:52,082] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M50_metrics [2025-08-04 08:49:52,086] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M50_metrics [2025-08-04 08:49:52,086] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M50_metrics [2025-08-04 08:49:52,086] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M50_metrics [2025-08-04 08:49:52,094] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M50_metrics [2025-08-04 08:49:52,185] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:52,189] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:52,190] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:52,190] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:52,196] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:52,196] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:52,196] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:52,196] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:52,196] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:52,197] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:52,197] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:52,197] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:52,261] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:53,175] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:53,179] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:53,180] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:53,180] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:53,185] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:53,185] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:53,185] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:53,185] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:53,185] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:53,185] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:53,185] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:53,185] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:53,240] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M50_featureCounts.out [2025-08-04 08:49:54,112] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M50_metrics [2025-08-04 08:49:54,115] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M50_metrics [2025-08-04 08:49:54,119] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M50_metrics [2025-08-04 08:49:54,170] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M60_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:54,170] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M60_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:54,360] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M60_metrics [2025-08-04 08:49:54,363] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M60_metrics [2025-08-04 08:49:54,364] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M60_metrics [2025-08-04 08:49:54,364] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M60_metrics [2025-08-04 08:49:54,370] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M60_metrics [2025-08-04 08:49:54,416] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M60_hist.pdf [2025-08-04 08:49:54,471] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:54,475] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:54,475] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:54,475] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:54,481] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:54,481] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:54,482] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:54,482] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:54,482] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:54,482] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:54,482] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:54,482] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:54,500] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:55,417] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:55,421] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:55,421] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:55,422] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:55,428] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:55,428] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:55,428] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:55,428] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:55,428] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:55,428] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:55,428] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:55,428] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:55,446] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M60_featureCounts.out [2025-08-04 08:49:56,303] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M60_metrics [2025-08-04 08:49:56,306] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M60_metrics [2025-08-04 08:49:56,326] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M60_metrics [2025-08-04 08:49:56,378] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M06A_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:56,380] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M06A_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:56,535] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:56,539] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:56,540] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:56,540] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:56,545] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:56,545] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:56,545] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:56,545] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:56,545] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:56,545] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:56,545] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:56,546] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:56,565] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:57,491] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:57,496] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:57,496] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:57,496] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:57,502] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:57,502] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:57,503] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:57,503] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:57,503] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:57,503] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:57,503] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:57,503] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:57,523] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M06AD_featureCounts.out [2025-08-04 08:49:58,459] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M05A_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:49:58,461] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M05A_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:49:58,606] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M05A_hist.pdf [2025-08-04 08:49:58,621] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M05A_metrics [2025-08-04 08:49:58,625] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M05A_metrics [2025-08-04 08:49:58,626] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M05A_metrics [2025-08-04 08:49:58,626] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M05A_metrics [2025-08-04 08:49:58,633] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M05A_metrics [2025-08-04 08:49:58,717] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:58,722] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:58,722] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:58,722] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:58,728] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:58,728] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:58,728] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:58,728] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:58,728] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:58,728] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:58,728] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:58,728] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:58,787] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:59,719] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:59,723] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:59,724] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:59,724] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:59,730] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:59,730] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:59,730] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:59,730] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:59,730] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:59,730] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:59,730] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:59,730] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:49:59,749] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M05A_featureCounts.out [2025-08-04 08:50:00,650] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M05A_metrics [2025-08-04 08:50:00,653] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M05A_metrics [2025-08-04 08:50:00,658] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M05A_metrics [2025-08-04 08:50:00,711] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M07A_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:00,713] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M07A_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:00,879] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:00,881] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:00,882] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:00,882] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:00,887] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:00,887] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:00,887] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:00,888] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:00,888] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:00,888] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:00,888] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:00,888] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:00,948] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:01,893] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:01,897] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:01,913] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:01,913] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:01,921] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:01,921] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:01,921] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:01,921] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:01,921] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:01,921] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:01,921] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:01,921] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:01,945] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M07AD_featureCounts.out [2025-08-04 08:50:02,870] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M07A_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:02,870] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M07A_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:02,981] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M07A_hist.pdf [2025-08-04 08:50:03,021] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M07A_metrics [2025-08-04 08:50:03,025] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M07A_metrics [2025-08-04 08:50:03,026] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M07A_metrics [2025-08-04 08:50:03,026] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M07A_metrics [2025-08-04 08:50:03,030] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M07A_metrics [2025-08-04 08:50:03,136] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:03,139] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:03,140] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:03,140] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:03,146] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:03,146] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:03,146] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:03,146] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:03,146] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:03,146] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:03,146] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:03,146] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:03,165] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:04,103] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:04,107] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:04,107] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:04,107] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:04,112] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:04,112] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:04,112] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:04,112] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:04,113] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:04,113] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:04,113] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:04,113] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:04,133] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M07A_featureCounts.out [2025-08-04 08:50:05,020] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M07A_metrics [2025-08-04 08:50:05,023] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M07A_metrics [2025-08-04 08:50:05,028] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M07A_metrics [2025-08-04 08:50:05,067] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M08_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:05,069] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M08_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:05,194] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M08_hist.pdf [2025-08-04 08:50:05,219] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M08_metrics [2025-08-04 08:50:05,222] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M08_metrics [2025-08-04 08:50:05,223] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M08_metrics [2025-08-04 08:50:05,223] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M08_metrics [2025-08-04 08:50:05,231] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M08_metrics [2025-08-04 08:50:05,313] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:05,317] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:05,317] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:05,317] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:05,322] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:05,322] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:05,323] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:05,323] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:05,323] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:05,323] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:05,323] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:05,323] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:05,342] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:06,289] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:06,293] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:06,293] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:06,293] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:06,299] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:06,299] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:06,299] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:06,299] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:06,299] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:06,299] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:06,299] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:06,299] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:06,320] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M08_featureCounts.out [2025-08-04 08:50:07,242] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M08_metrics [2025-08-04 08:50:07,244] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M08_metrics [2025-08-04 08:50:07,261] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M08_metrics [2025-08-04 08:50:07,306] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M18_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:07,309] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M18_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:07,429] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M18_hist.pdf [2025-08-04 08:50:07,449] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M18_metrics [2025-08-04 08:50:07,453] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M18_metrics [2025-08-04 08:50:07,453] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M18_metrics [2025-08-04 08:50:07,453] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M18_metrics [2025-08-04 08:50:07,460] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M18_metrics [2025-08-04 08:50:07,562] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:07,566] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:07,566] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:07,566] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:07,572] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:07,572] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:07,573] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:07,573] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:07,573] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:07,573] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:07,573] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:07,573] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:07,593] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:08,543] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:08,546] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:08,547] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:08,547] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:08,553] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:08,553] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:08,553] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:08,553] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:08,553] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:08,553] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:08,553] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:08,553] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:08,574] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M18_featureCounts.out [2025-08-04 08:50:09,490] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M18_metrics [2025-08-04 08:50:09,492] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M18_metrics [2025-08-04 08:50:09,497] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M18_metrics [2025-08-04 08:50:09,544] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M28_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:09,548] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M28_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:09,732] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M28_metrics [2025-08-04 08:50:09,736] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M28_metrics [2025-08-04 08:50:09,737] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M28_metrics [2025-08-04 08:50:09,737] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M28_metrics [2025-08-04 08:50:09,742] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M28_metrics [2025-08-04 08:50:09,793] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M28_hist.pdf [2025-08-04 08:50:09,823] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:09,827] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:09,827] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:09,828] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:09,832] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:09,832] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:09,832] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:09,832] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:09,832] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:09,832] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:09,832] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:09,832] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:09,852] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:10,781] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:10,785] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:10,786] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:10,786] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:10,791] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:10,791] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:10,791] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:10,791] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:10,791] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:10,791] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:10,791] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:10,791] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:10,852] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M28_featureCounts.out [2025-08-04 08:50:11,768] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M28_metrics [2025-08-04 08:50:11,771] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M28_metrics [2025-08-04 08:50:11,776] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M28_metrics [2025-08-04 08:50:11,829] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M38_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:11,831] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M38_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:11,973] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M38_hist.pdf [2025-08-04 08:50:12,000] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M38_metrics [2025-08-04 08:50:12,004] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M38_metrics [2025-08-04 08:50:12,004] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M38_metrics [2025-08-04 08:50:12,004] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M38_metrics [2025-08-04 08:50:12,011] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M38_metrics [2025-08-04 08:50:12,081] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:12,085] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:12,086] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:12,086] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:12,092] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:12,092] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:12,092] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:12,092] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:12,092] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:12,092] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:12,092] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:12,092] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:12,113] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:13,059] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:13,063] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:13,063] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:13,063] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:13,070] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:13,070] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:13,070] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:13,070] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:13,070] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:13,070] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:13,070] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:13,070] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:13,091] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M38_featureCounts.out [2025-08-04 08:50:13,980] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M38_metrics [2025-08-04 08:50:13,983] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M38_metrics [2025-08-04 08:50:13,989] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M38_metrics [2025-08-04 08:50:14,048] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M48_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:14,051] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M48_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:14,198] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M48_hist.pdf [2025-08-04 08:50:14,225] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M48_metrics [2025-08-04 08:50:14,228] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M48_metrics [2025-08-04 08:50:14,229] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M48_metrics [2025-08-04 08:50:14,229] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M48_metrics [2025-08-04 08:50:14,234] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M48_metrics [2025-08-04 08:50:14,289] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:14,292] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:14,292] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:14,292] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:14,297] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:14,297] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:14,297] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:14,297] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:14,297] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:14,297] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:14,298] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:14,298] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:14,317] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:15,275] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:15,279] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:15,279] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:15,279] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:15,284] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:15,284] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:15,284] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:15,284] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:15,284] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:15,284] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:15,284] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:15,284] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:15,303] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M48_featureCounts.out [2025-08-04 08:50:16,201] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M48_metrics [2025-08-04 08:50:16,204] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M48_metrics [2025-08-04 08:50:16,207] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M48_metrics [2025-08-04 08:50:16,245] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M58_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:16,248] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M58_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:16,388] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M58_metrics [2025-08-04 08:50:16,392] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M58_metrics [2025-08-04 08:50:16,392] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M58_metrics [2025-08-04 08:50:16,393] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M58_metrics [2025-08-04 08:50:16,399] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M58_metrics [2025-08-04 08:50:16,445] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M58_hist.pdf [2025-08-04 08:50:16,500] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:16,504] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:16,504] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:16,504] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:16,510] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:16,511] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:16,511] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:16,511] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:16,511] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:16,511] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:16,511] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:16,511] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:16,567] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:17,531] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:17,535] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:17,535] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:17,535] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:17,541] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:17,541] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:17,541] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:17,541] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:17,541] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:17,541] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:17,541] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:17,541] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:17,560] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M58_featureCounts.out [2025-08-04 08:50:18,462] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M58_metrics [2025-08-04 08:50:18,466] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M58_metrics [2025-08-04 08:50:18,487] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M58_metrics [2025-08-04 08:50:18,548] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M68_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:18,551] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M68_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:18,703] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M68_metrics [2025-08-04 08:50:18,706] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M68_metrics [2025-08-04 08:50:18,706] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M68_metrics [2025-08-04 08:50:18,706] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M68_metrics [2025-08-04 08:50:18,713] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M68_metrics [2025-08-04 08:50:18,749] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M68_hist.pdf [2025-08-04 08:50:18,795] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:18,798] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:18,799] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:18,799] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:18,805] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:18,805] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:18,805] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:18,805] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:18,805] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:18,805] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:18,805] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:18,805] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:18,825] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:19,767] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:19,771] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:19,771] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:19,772] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:19,778] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:19,779] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:19,779] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:19,779] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:19,779] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:19,779] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:19,779] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:19,779] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:19,799] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M68_featureCounts.out [2025-08-04 08:50:20,662] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M68_metrics [2025-08-04 08:50:20,665] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M68_metrics [2025-08-04 08:50:20,671] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M68_metrics [2025-08-04 08:50:20,722] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M46_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:20,725] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M46_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:20,900] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M46_metrics [2025-08-04 08:50:20,904] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M46_metrics [2025-08-04 08:50:20,905] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M46_metrics [2025-08-04 08:50:20,905] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M46_metrics [2025-08-04 08:50:20,910] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M46_metrics [2025-08-04 08:50:20,943] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M46_hist.pdf [2025-08-04 08:50:20,979] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:20,983] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:20,983] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:20,983] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:20,989] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:20,990] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:20,990] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:20,990] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:20,990] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:20,990] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:20,990] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:20,990] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:21,011] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:21,924] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:21,928] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:21,928] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:21,928] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:21,934] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:21,934] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:21,934] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:21,934] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:21,934] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:21,934] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:21,934] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:21,935] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:22,006] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M46_featureCounts.out [2025-08-04 08:50:22,900] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M46_metrics [2025-08-04 08:50:22,904] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M46_metrics [2025-08-04 08:50:22,909] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M46_metrics [2025-08-04 08:50:22,968] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M56_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:22,971] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M56_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:23,109] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M56_hist.pdf [2025-08-04 08:50:23,188] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M56_metrics [2025-08-04 08:50:23,192] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M56_metrics [2025-08-04 08:50:23,193] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M56_metrics [2025-08-04 08:50:23,193] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M56_metrics [2025-08-04 08:50:23,201] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M56_metrics [2025-08-04 08:50:23,300] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:23,304] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:23,305] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:23,305] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:23,310] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:23,310] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:23,310] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:23,310] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:23,311] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:23,311] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:23,311] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:23,311] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:23,331] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:24,319] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:24,324] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:24,324] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:24,324] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:24,331] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:24,331] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:24,331] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:24,331] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:24,331] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:24,331] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:24,331] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:24,331] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:24,352] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M56_featureCounts.out [2025-08-04 08:50:25,218] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M56_metrics [2025-08-04 08:50:25,220] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M56_metrics [2025-08-04 08:50:25,226] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M56_metrics [2025-08-04 08:50:25,277] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M66_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:25,279] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M66_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:25,419] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M66_hist.pdf [2025-08-04 08:50:25,449] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M66_metrics [2025-08-04 08:50:25,453] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M66_metrics [2025-08-04 08:50:25,454] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M66_metrics [2025-08-04 08:50:25,454] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M66_metrics [2025-08-04 08:50:25,461] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M66_metrics [2025-08-04 08:50:25,528] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:25,532] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:25,533] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:25,533] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:25,539] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:25,539] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:25,539] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:25,539] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:25,539] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:25,539] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:25,539] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:25,539] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:25,559] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:26,499] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:26,503] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:26,503] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:26,503] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:26,510] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:26,510] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:26,510] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:26,510] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:26,510] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:26,510] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:26,510] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:26,510] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:26,531] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M66_featureCounts.out [2025-08-04 08:50:27,430] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M66_metrics [2025-08-04 08:50:27,433] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M66_metrics [2025-08-04 08:50:27,438] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M66_metrics [2025-08-04 08:50:27,494] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M05A_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:27,497] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M05A_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:27,672] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:27,676] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:27,677] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:27,677] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:27,683] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:27,683] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:27,683] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:27,683] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:27,683] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:27,683] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:27,683] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:27,683] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:27,703] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:28,624] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:28,627] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:28,627] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:28,627] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:28,632] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:28,632] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:28,632] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:28,632] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:28,632] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:28,632] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:28,632] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:28,632] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:28,652] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M05AD_featureCounts.out [2025-08-04 08:50:29,575] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M05_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:29,578] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M05_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:29,715] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M05_metrics [2025-08-04 08:50:29,719] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M05_metrics [2025-08-04 08:50:29,720] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M05_metrics [2025-08-04 08:50:29,720] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M05_metrics [2025-08-04 08:50:29,725] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M05_metrics [2025-08-04 08:50:29,796] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M05_hist.pdf [2025-08-04 08:50:29,846] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:29,850] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:29,850] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:29,851] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:29,855] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:29,855] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:29,855] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:29,856] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:29,856] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:29,856] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:29,856] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:29,856] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:29,876] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:30,804] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:30,807] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:30,807] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:30,807] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:30,812] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:30,812] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:30,812] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:30,812] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:30,812] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:30,812] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:30,812] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:30,812] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:30,831] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M05_featureCounts.out [2025-08-04 08:50:31,709] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M05_metrics [2025-08-04 08:50:31,712] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M05_metrics [2025-08-04 08:50:31,716] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M05_metrics [2025-08-04 08:50:31,774] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M15_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:31,777] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M15_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:31,948] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M15_metrics [2025-08-04 08:50:31,952] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M15_metrics [2025-08-04 08:50:31,952] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M15_metrics [2025-08-04 08:50:31,952] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M15_metrics [2025-08-04 08:50:31,958] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M15_metrics [2025-08-04 08:50:32,035] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M15_hist.pdf [2025-08-04 08:50:32,068] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:32,072] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:32,072] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:32,072] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:32,078] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:32,078] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:32,078] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:32,078] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:32,078] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:32,078] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:32,078] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:32,078] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:32,102] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:33,049] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:33,053] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:33,053] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:33,053] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:33,058] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:33,058] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:33,058] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:33,058] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:33,058] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:33,059] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:33,059] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:33,059] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:33,078] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M15_featureCounts.out [2025-08-04 08:50:33,980] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M15_metrics [2025-08-04 08:50:33,983] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M15_metrics [2025-08-04 08:50:33,988] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M15_metrics [2025-08-04 08:50:34,039] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M03_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:34,042] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M03_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:34,200] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M03_metrics [2025-08-04 08:50:34,204] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M03_metrics [2025-08-04 08:50:34,204] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M03_metrics [2025-08-04 08:50:34,204] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M03_metrics [2025-08-04 08:50:34,210] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M03_metrics [2025-08-04 08:50:34,279] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M03_hist.pdf [2025-08-04 08:50:34,300] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:34,304] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:34,304] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:34,304] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:34,309] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:34,309] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:34,309] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:34,310] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:34,310] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:34,310] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:34,310] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:34,310] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:34,370] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:35,294] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:35,298] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:35,299] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:35,299] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:35,305] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:35,305] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:35,306] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:35,306] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:35,306] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:35,306] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:35,306] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:35,306] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:35,325] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M03_featureCounts.out [2025-08-04 08:50:36,207] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M03_metrics [2025-08-04 08:50:36,210] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M03_metrics [2025-08-04 08:50:36,216] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M03_metrics [2025-08-04 08:50:36,263] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M13_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:36,266] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M13_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:36,407] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M13_hist.pdf [2025-08-04 08:50:36,431] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M13_metrics [2025-08-04 08:50:36,435] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M13_metrics [2025-08-04 08:50:36,436] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M13_metrics [2025-08-04 08:50:36,436] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M13_metrics [2025-08-04 08:50:36,442] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M13_metrics [2025-08-04 08:50:36,548] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:36,553] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:36,553] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:36,553] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:36,560] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:36,560] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:36,560] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:36,560] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:36,560] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:36,560] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:36,560] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:36,560] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:36,581] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:37,503] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:37,507] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:37,507] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:37,507] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:37,514] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:37,514] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:37,514] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:37,514] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:37,514] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:37,514] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:37,514] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:37,514] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:37,534] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M13_featureCounts.out [2025-08-04 08:50:38,415] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M13_metrics [2025-08-04 08:50:38,418] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M13_metrics [2025-08-04 08:50:38,424] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M13_metrics [2025-08-04 08:50:38,473] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M23_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:38,476] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M23_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:38,658] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M23_metrics [2025-08-04 08:50:38,662] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M23_metrics [2025-08-04 08:50:38,663] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M23_metrics [2025-08-04 08:50:38,663] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M23_metrics [2025-08-04 08:50:38,670] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M23_metrics [2025-08-04 08:50:38,727] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M23_hist.pdf [2025-08-04 08:50:38,780] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:38,785] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:38,785] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:38,785] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:38,791] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:38,791] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:38,791] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:38,791] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:38,791] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:38,791] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:38,791] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:38,791] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:38,845] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:39,772] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:39,776] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:39,777] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:39,777] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:39,782] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:39,782] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:39,782] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:39,782] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:39,782] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:39,782] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:39,783] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:39,783] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:39,803] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M23_featureCounts.out [2025-08-04 08:50:40,667] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M23_metrics [2025-08-04 08:50:40,670] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M23_metrics [2025-08-04 08:50:40,686] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M23_metrics [2025-08-04 08:50:40,738] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M33_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:40,740] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M33_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:40,892] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M33_hist.pdf [2025-08-04 08:50:40,909] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M33_metrics [2025-08-04 08:50:40,914] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M33_metrics [2025-08-04 08:50:40,914] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M33_metrics [2025-08-04 08:50:40,914] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M33_metrics [2025-08-04 08:50:40,921] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M33_metrics [2025-08-04 08:50:40,998] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:41,001] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:41,002] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:41,002] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:41,008] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:41,009] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:41,009] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:41,009] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:41,009] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:41,009] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:41,009] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:41,009] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:41,063] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:41,985] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:41,989] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:41,989] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:41,989] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:41,995] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:41,995] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:41,995] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:41,995] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:41,995] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:41,995] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:41,995] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:41,996] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:42,015] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M33_featureCounts.out [2025-08-04 08:50:42,924] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M33_metrics [2025-08-04 08:50:42,927] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M33_metrics [2025-08-04 08:50:42,933] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M33_metrics [2025-08-04 08:50:42,990] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M43_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:42,993] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M43_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:43,131] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M43_hist.pdf [2025-08-04 08:50:43,159] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M43_metrics [2025-08-04 08:50:43,163] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M43_metrics [2025-08-04 08:50:43,163] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M43_metrics [2025-08-04 08:50:43,163] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M43_metrics [2025-08-04 08:50:43,170] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M43_metrics [2025-08-04 08:50:43,248] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:43,252] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:43,252] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:43,252] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:43,258] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:43,259] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:43,259] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:43,259] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:43,259] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:43,259] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:43,259] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:43,259] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:43,278] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:44,209] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:44,213] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:44,214] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:44,214] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:44,221] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:44,221] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:44,221] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:44,221] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:44,221] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:44,221] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:44,221] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:44,221] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:44,243] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M43_featureCounts.out [2025-08-04 08:50:45,123] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M43_metrics [2025-08-04 08:50:45,126] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M43_metrics [2025-08-04 08:50:45,131] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M43_metrics [2025-08-04 08:50:45,200] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M53_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:45,203] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M53_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:45,373] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M53_metrics [2025-08-04 08:50:45,377] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M53_metrics [2025-08-04 08:50:45,378] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M53_metrics [2025-08-04 08:50:45,378] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M53_metrics [2025-08-04 08:50:45,384] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M53_metrics [2025-08-04 08:50:45,451] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M53_hist.pdf [2025-08-04 08:50:45,485] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:45,489] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:45,490] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:45,490] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:45,496] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:45,496] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:45,496] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:45,496] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:45,496] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:45,496] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:45,496] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:45,496] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:45,516] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:46,432] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:46,436] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:46,437] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:46,437] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:46,444] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:46,444] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:46,444] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:46,444] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:46,444] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:46,445] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:46,445] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:46,445] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:46,465] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M53_featureCounts.out [2025-08-04 08:50:47,366] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M53_metrics [2025-08-04 08:50:47,370] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M53_metrics [2025-08-04 08:50:47,377] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M53_metrics [2025-08-04 08:50:47,430] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M31_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:47,432] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M31_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:47,585] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M31_metrics [2025-08-04 08:50:47,590] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M31_metrics [2025-08-04 08:50:47,590] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M31_metrics [2025-08-04 08:50:47,591] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M31_metrics [2025-08-04 08:50:47,596] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M31_metrics [2025-08-04 08:50:47,627] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M31_hist.pdf [2025-08-04 08:50:47,659] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:47,663] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:47,663] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:47,663] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:47,668] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:47,668] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:47,668] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:47,668] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:47,669] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:47,669] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:47,669] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:47,669] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:47,689] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:48,628] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:48,632] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:48,633] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:48,633] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:48,639] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:48,639] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:48,639] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:48,639] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:48,639] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:48,639] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:48,639] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:48,639] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:48,659] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M31_featureCounts.out [2025-08-04 08:50:49,571] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M31_metrics [2025-08-04 08:50:49,573] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M31_metrics [2025-08-04 08:50:49,577] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M31_metrics [2025-08-04 08:50:49,617] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M41_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:49,620] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M41_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:49,737] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M41_hist.pdf [2025-08-04 08:50:49,772] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M41_metrics [2025-08-04 08:50:49,775] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M41_metrics [2025-08-04 08:50:49,776] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M41_metrics [2025-08-04 08:50:49,776] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M41_metrics [2025-08-04 08:50:49,781] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M41_metrics [2025-08-04 08:50:49,835] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:49,839] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:49,839] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:49,839] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:49,844] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:49,844] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:49,844] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:49,844] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:49,844] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:49,844] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:49,844] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:49,844] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:49,905] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:50,865] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:50,869] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:50,869] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:50,869] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:50,874] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:50,874] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:50,874] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:50,874] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:50,874] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:50,874] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:50,874] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:50,874] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:50,906] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M41_featureCounts.out [2025-08-04 08:50:51,808] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M41_metrics [2025-08-04 08:50:51,811] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M41_metrics [2025-08-04 08:50:51,826] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M41_metrics [2025-08-04 08:50:51,876] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M51_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:51,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M51_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:52,058] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M51_metrics [2025-08-04 08:50:52,062] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M51_metrics [2025-08-04 08:50:52,062] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M51_metrics [2025-08-04 08:50:52,063] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M51_metrics [2025-08-04 08:50:52,069] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M51_metrics [2025-08-04 08:50:52,143] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M51_hist.pdf [2025-08-04 08:50:52,189] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:52,193] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:52,194] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:52,194] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:52,200] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:52,200] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:52,200] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:52,200] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:52,200] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:52,200] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:52,200] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:52,200] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:52,224] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:53,171] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:53,175] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:53,176] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:53,176] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:53,183] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:53,183] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:53,183] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:53,183] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:53,183] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:53,183] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:53,183] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:53,183] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:53,203] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M51_featureCounts.out [2025-08-04 08:50:54,119] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M51_metrics [2025-08-04 08:50:54,123] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M51_metrics [2025-08-04 08:50:54,129] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M51_metrics [2025-08-04 08:50:54,179] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M61_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:54,181] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M61_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:54,334] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M61_hist.pdf [2025-08-04 08:50:54,355] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M61_metrics [2025-08-04 08:50:54,359] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M61_metrics [2025-08-04 08:50:54,360] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M61_metrics [2025-08-04 08:50:54,360] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M61_metrics [2025-08-04 08:50:54,365] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M61_metrics [2025-08-04 08:50:54,449] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:54,452] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:54,453] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:54,453] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:54,458] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:54,458] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:54,458] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:54,458] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:54,459] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:54,459] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:54,459] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:54,459] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:54,538] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:55,490] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:55,493] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:55,494] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:55,494] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:55,501] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:55,501] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:55,501] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:55,501] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:55,501] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:55,501] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:55,501] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:55,502] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:55,520] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M61_featureCounts.out [2025-08-04 08:50:56,422] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M61_metrics [2025-08-04 08:50:56,426] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M61_metrics [2025-08-04 08:50:56,431] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M61_metrics [2025-08-04 08:50:56,475] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M19_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:56,478] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M19_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:56,619] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M19_hist.pdf [2025-08-04 08:50:56,644] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M19_metrics [2025-08-04 08:50:56,648] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M19_metrics [2025-08-04 08:50:56,648] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M19_metrics [2025-08-04 08:50:56,649] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M19_metrics [2025-08-04 08:50:56,655] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M19_metrics [2025-08-04 08:50:56,754] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:56,758] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:56,759] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:56,759] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:56,765] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:56,765] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:56,765] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:56,765] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:56,765] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:56,765] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:56,765] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:56,765] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:56,785] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:57,698] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:57,700] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:57,701] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:57,701] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:57,705] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:57,705] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:57,705] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:57,705] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:57,705] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:57,705] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:57,705] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:57,705] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:57,756] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M19_featureCounts.out [2025-08-04 08:50:58,681] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M19_metrics [2025-08-04 08:50:58,685] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M19_metrics [2025-08-04 08:50:58,690] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M19_metrics [2025-08-04 08:50:58,736] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M29_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:50:58,738] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M29_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:50:58,887] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M29_metrics [2025-08-04 08:50:58,890] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M29_metrics [2025-08-04 08:50:58,890] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M29_metrics [2025-08-04 08:50:58,890] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M29_metrics [2025-08-04 08:50:58,894] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M29_metrics [2025-08-04 08:50:58,945] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M29_hist.pdf [2025-08-04 08:50:59,010] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:50:59,014] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:50:59,014] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:50:59,014] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:50:59,022] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:50:59,022] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:50:59,022] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:50:59,022] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:50:59,022] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:50:59,022] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:50:59,023] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:50:59,023] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:50:59,047] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:50:59,989] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:50:59,993] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:50:59,994] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:50:59,994] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:50:59,999] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:51:00,000] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:51:00,000] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:51:00,000] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:51:00,000] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:51:00,000] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:51:00,000] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:51:00,000] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:51:00,020] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M29_featureCounts.out [2025-08-04 08:51:00,918] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M29_metrics [2025-08-04 08:51:00,920] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M29_metrics [2025-08-04 08:51:00,925] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M29_metrics [2025-08-04 08:51:00,978] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M39_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:51:00,981] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M39_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:51:01,108] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M39_hist.pdf [2025-08-04 08:51:01,128] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M39_metrics [2025-08-04 08:51:01,130] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M39_metrics [2025-08-04 08:51:01,131] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M39_metrics [2025-08-04 08:51:01,131] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M39_metrics [2025-08-04 08:51:01,136] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M39_metrics [2025-08-04 08:51:01,193] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:01,197] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:01,197] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:01,197] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:01,203] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:01,203] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:01,203] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:01,203] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:01,203] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:01,203] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:01,203] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:01,203] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:01,269] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:02,215] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:02,218] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:02,219] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:02,219] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:02,224] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:02,224] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:02,224] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:02,224] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:02,224] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:02,224] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:02,224] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:02,224] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:02,244] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M39_featureCounts.out [2025-08-04 08:51:03,161] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M39_metrics [2025-08-04 08:51:03,165] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M39_metrics [2025-08-04 08:51:03,170] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M39_metrics [2025-08-04 08:51:03,216] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M49_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:51:03,219] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M49_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:51:03,364] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M49_hist.pdf [2025-08-04 08:51:03,387] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M49_metrics [2025-08-04 08:51:03,391] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M49_metrics [2025-08-04 08:51:03,391] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M49_metrics [2025-08-04 08:51:03,391] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M49_metrics [2025-08-04 08:51:03,397] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M49_metrics [2025-08-04 08:51:03,489] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:03,493] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:03,493] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:03,493] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:03,498] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:03,498] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:03,499] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:03,499] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:03,499] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:03,499] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:03,499] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:03,499] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:03,518] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:04,463] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:04,467] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:04,468] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:04,468] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:04,474] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:04,474] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:04,474] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:04,474] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:04,474] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:04,474] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:04,474] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:04,474] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:04,495] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M49_featureCounts.out [2025-08-04 08:51:05,430] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M49_metrics [2025-08-04 08:51:05,434] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M49_metrics [2025-08-04 08:51:05,439] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M49_metrics [2025-08-04 08:51:05,484] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M59_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:51:05,487] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M59_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:51:05,657] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M59_metrics [2025-08-04 08:51:05,661] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M59_metrics [2025-08-04 08:51:05,662] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M59_metrics [2025-08-04 08:51:05,662] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M59_metrics [2025-08-04 08:51:05,667] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M59_metrics [2025-08-04 08:51:05,722] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M59_hist.pdf [2025-08-04 08:51:05,775] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:05,779] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:05,779] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:05,779] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:05,785] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:05,785] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:05,786] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:05,786] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:05,786] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:05,786] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:05,786] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:05,786] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:05,806] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:06,769] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:06,773] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:06,774] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:06,774] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:06,779] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:06,779] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:06,779] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:06,779] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:06,779] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:06,779] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:06,779] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:06,779] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:06,801] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M59_featureCounts.out [2025-08-04 08:51:07,701] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M59_metrics [2025-08-04 08:51:07,704] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M59_metrics [2025-08-04 08:51:07,709] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M59_metrics [2025-08-04 08:51:07,764] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M57_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:51:07,766] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M57_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:51:07,915] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M57_hist.pdf [2025-08-04 08:51:07,932] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M57_metrics [2025-08-04 08:51:07,936] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M57_metrics [2025-08-04 08:51:07,937] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M57_metrics [2025-08-04 08:51:07,937] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M57_metrics [2025-08-04 08:51:07,944] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M57_metrics [2025-08-04 08:51:08,041] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:08,045] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:08,045] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:08,046] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:08,051] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:08,051] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:08,051] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:08,051] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:08,051] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:08,051] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:08,051] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:08,051] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:08,126] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:09,078] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:09,081] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:09,095] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:09,096] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:09,103] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:09,104] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:09,104] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:09,104] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:09,104] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:09,104] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:09,104] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:09,104] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:09,128] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M57_featureCounts.out [2025-08-04 08:51:10,021] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M57_metrics [2025-08-04 08:51:10,025] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M57_metrics [2025-08-04 08:51:10,031] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M57_metrics [2025-08-04 08:51:10,080] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M67_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:51:10,083] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M67_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:51:10,253] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M67_metrics [2025-08-04 08:51:10,256] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M67_metrics [2025-08-04 08:51:10,257] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M67_metrics [2025-08-04 08:51:10,257] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M67_metrics [2025-08-04 08:51:10,262] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M67_metrics [2025-08-04 08:51:10,309] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M67_hist.pdf [2025-08-04 08:51:10,348] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:10,352] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:10,353] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:10,353] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:10,358] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:10,358] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:10,358] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:10,358] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:10,358] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:10,358] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:10,358] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:10,358] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:10,377] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:11,311] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:11,315] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:11,315] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:11,315] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:11,322] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:11,322] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:11,322] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:11,322] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:11,322] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:11,322] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:11,322] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:11,322] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:11,342] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M67_featureCounts.out [2025-08-04 08:51:12,254] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M67_metrics [2025-08-04 08:51:12,257] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M67_metrics [2025-08-04 08:51:12,264] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M67_metrics [2025-08-04 08:51:12,325] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M06_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:51:12,331] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M06_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:51:12,487] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M06_metrics [2025-08-04 08:51:12,492] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M06_metrics [2025-08-04 08:51:12,492] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M06_metrics [2025-08-04 08:51:12,492] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M06_metrics [2025-08-04 08:51:12,498] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M06_metrics [2025-08-04 08:51:12,563] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M06_hist.pdf [2025-08-04 08:51:12,592] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:12,596] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:12,597] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:12,597] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:12,603] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:12,603] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:12,603] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:12,603] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:12,603] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:12,603] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:12,603] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:12,603] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:12,623] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:13,544] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:13,546] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:13,547] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:13,547] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:13,552] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:13,552] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:13,552] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:13,552] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:13,552] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:13,552] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:13,552] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:13,552] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:13,611] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M06_featureCounts.out [2025-08-04 08:51:14,524] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M06_metrics [2025-08-04 08:51:14,527] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M06_metrics [2025-08-04 08:51:14,534] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M06_metrics [2025-08-04 08:51:14,588] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M16_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:51:14,591] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M16_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:51:14,734] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M16_hist.pdf [2025-08-04 08:51:14,739] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M16_metrics [2025-08-04 08:51:14,741] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M16_metrics [2025-08-04 08:51:14,742] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M16_metrics [2025-08-04 08:51:14,742] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M16_metrics [2025-08-04 08:51:14,745] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M16_metrics [2025-08-04 08:51:14,867] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:14,871] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:14,872] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:14,872] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:14,878] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:14,878] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:14,878] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:14,878] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:14,878] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:14,878] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:14,878] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:14,878] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:14,898] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:15,868] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:15,872] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:15,873] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:15,873] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:15,879] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:15,879] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:15,879] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:15,879] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:15,879] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:15,879] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:15,879] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:15,880] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:15,899] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M16_featureCounts.out [2025-08-04 08:51:16,824] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M16_metrics [2025-08-04 08:51:16,827] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M16_metrics [2025-08-04 08:51:16,833] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M16_metrics [2025-08-04 08:51:16,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M26_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:51:16,882] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M26_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:51:17,026] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M26_hist.pdf [2025-08-04 08:51:17,058] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M26_metrics [2025-08-04 08:51:17,062] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M26_metrics [2025-08-04 08:51:17,062] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M26_metrics [2025-08-04 08:51:17,062] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M26_metrics [2025-08-04 08:51:17,069] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M26_metrics [2025-08-04 08:51:17,153] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:17,155] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:17,156] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:17,156] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:17,161] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:17,161] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:17,161] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:17,161] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:17,161] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:17,161] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:17,161] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:17,161] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:17,231] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:18,175] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:18,180] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:18,180] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:18,180] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:18,187] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:18,188] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:18,188] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:18,188] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:18,188] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:18,188] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:18,188] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:18,188] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:18,210] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M26_featureCounts.out [2025-08-04 08:51:19,101] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M26_metrics [2025-08-04 08:51:19,105] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M26_metrics [2025-08-04 08:51:19,112] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M26_metrics [2025-08-04 08:51:19,173] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M36_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:51:19,176] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M36_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:51:19,353] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M36_metrics [2025-08-04 08:51:19,357] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M36_metrics [2025-08-04 08:51:19,358] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M36_metrics [2025-08-04 08:51:19,358] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M36_metrics [2025-08-04 08:51:19,363] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M36_metrics [2025-08-04 08:51:19,400] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M36_hist.pdf [2025-08-04 08:51:19,452] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:19,457] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:19,488] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:19,488] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:19,496] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:19,496] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:19,496] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:19,496] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:19,496] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:19,496] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:19,496] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:19,497] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:19,566] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:20,507] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:20,511] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:20,512] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:20,512] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:20,517] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:20,517] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:20,518] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:20,518] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:20,518] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:20,518] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:20,518] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:20,518] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:20,537] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M36_featureCounts.out [2025-08-04 08:51:21,415] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M36_metrics [2025-08-04 08:51:21,418] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M36_metrics [2025-08-04 08:51:21,425] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M36_metrics [2025-08-04 08:51:21,474] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M04_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:51:21,477] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M04_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:51:21,601] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M04_hist.pdf [2025-08-04 08:51:21,625] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M04_metrics [2025-08-04 08:51:21,627] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M04_metrics [2025-08-04 08:51:21,628] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M04_metrics [2025-08-04 08:51:21,628] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M04_metrics [2025-08-04 08:51:21,633] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M04_metrics [2025-08-04 08:51:21,726] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:21,728] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:21,729] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:21,729] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:21,734] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:21,734] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:21,734] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:21,734] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:21,734] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:21,734] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:21,734] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:21,734] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:21,753] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:22,697] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:22,701] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:22,702] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:22,702] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:22,706] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:22,706] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:22,707] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:22,707] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:22,707] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:22,707] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:22,707] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:22,707] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:22,727] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M04_featureCounts.out [2025-08-04 08:51:23,618] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M04_metrics [2025-08-04 08:51:23,621] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M04_metrics [2025-08-04 08:51:23,627] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M04_metrics [2025-08-04 08:51:23,675] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M14_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:51:23,678] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M14_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:51:23,848] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M14_metrics [2025-08-04 08:51:23,850] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M14_metrics [2025-08-04 08:51:23,851] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M14_metrics [2025-08-04 08:51:23,851] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M14_metrics [2025-08-04 08:51:23,857] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M14_metrics [2025-08-04 08:51:23,950] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M14_hist.pdf [2025-08-04 08:51:23,980] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:23,984] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:23,985] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:23,985] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:23,990] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:23,990] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:23,990] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:23,990] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:23,990] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:23,990] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:23,990] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:23,990] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:24,012] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:24,955] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:24,959] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:24,960] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:24,960] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:24,966] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:24,966] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:24,966] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:24,966] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:24,967] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:24,967] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:24,967] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:24,967] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:25,022] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M14_featureCounts.out [2025-08-04 08:51:25,932] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M14_metrics [2025-08-04 08:51:25,936] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M14_metrics [2025-08-04 08:51:25,953] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M14_metrics [2025-08-04 08:51:26,010] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M24_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:51:26,013] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M24_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:51:26,183] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M24_metrics [2025-08-04 08:51:26,187] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M24_metrics [2025-08-04 08:51:26,187] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M24_metrics [2025-08-04 08:51:26,187] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M24_metrics [2025-08-04 08:51:26,192] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M24_metrics [2025-08-04 08:51:26,239] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M24_hist.pdf [2025-08-04 08:51:26,299] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:26,303] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:26,304] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:26,304] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:26,310] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:26,310] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:26,310] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:26,310] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:26,310] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:26,310] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:26,310] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:26,311] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:26,331] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:27,254] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:27,257] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:27,257] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:27,258] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:27,262] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:27,263] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:27,263] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:27,263] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:27,263] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:27,263] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:27,263] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:27,263] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:27,373] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M24_featureCounts.out [2025-08-04 08:51:28,269] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M24_metrics [2025-08-04 08:51:28,273] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M24_metrics [2025-08-04 08:51:28,278] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M24_metrics [2025-08-04 08:51:28,325] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M34_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:51:28,328] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M34_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:51:28,507] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M34_metrics [2025-08-04 08:51:28,511] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M34_metrics [2025-08-04 08:51:28,512] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M34_metrics [2025-08-04 08:51:28,512] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M34_metrics [2025-08-04 08:51:28,517] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M34_metrics [2025-08-04 08:51:28,569] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M34_hist.pdf [2025-08-04 08:51:28,631] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:28,636] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:28,636] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:28,636] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:28,643] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:28,643] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:28,643] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:28,643] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:28,643] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:28,643] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:28,643] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:28,643] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:28,664] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:29,594] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:29,599] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:29,599] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:29,599] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:29,604] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:29,604] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:29,604] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:29,605] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:29,605] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:29,605] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:29,605] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:29,605] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:29,625] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M34_featureCounts.out [2025-08-04 08:51:30,524] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M34_metrics [2025-08-04 08:51:30,527] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M34_metrics [2025-08-04 08:51:30,531] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M34_metrics [2025-08-04 08:51:30,581] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M44_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:51:30,584] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M44_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:51:30,752] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M44_metrics [2025-08-04 08:51:30,756] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M44_metrics [2025-08-04 08:51:30,756] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M44_metrics [2025-08-04 08:51:30,756] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M44_metrics [2025-08-04 08:51:30,763] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M44_metrics [2025-08-04 08:51:30,790] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M44_hist.pdf [2025-08-04 08:51:30,851] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:30,854] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:30,855] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:30,855] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:30,861] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:30,861] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:30,862] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:30,862] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:30,862] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:30,862] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:30,862] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:30,862] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:30,883] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:31,830] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:31,834] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:31,862] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:31,862] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:31,870] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:31,870] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:31,870] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:31,870] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:31,870] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:31,870] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:31,870] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:31,871] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:31,894] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M44_featureCounts.out [2025-08-04 08:51:32,790] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M44_metrics [2025-08-04 08:51:32,793] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M44_metrics [2025-08-04 08:51:32,799] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M44_metrics [2025-08-04 08:51:32,846] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M54_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:51:32,849] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M54_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:51:32,996] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M54_metrics [2025-08-04 08:51:32,998] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M54_metrics [2025-08-04 08:51:32,999] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M54_metrics [2025-08-04 08:51:32,999] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M54_metrics [2025-08-04 08:51:33,004] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M54_metrics [2025-08-04 08:51:33,043] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M54_hist.pdf [2025-08-04 08:51:33,106] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:33,111] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:33,111] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:33,111] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:33,118] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:33,118] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:33,118] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:33,118] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:33,118] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:33,118] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:33,118] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:33,118] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:33,139] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:34,089] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:34,093] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:34,094] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:34,094] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:34,099] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:34,099] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:34,099] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:34,099] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:34,099] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:34,099] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:34,099] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:34,099] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:34,119] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M54_featureCounts.out [2025-08-04 08:51:34,998] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M54_metrics [2025-08-04 08:51:35,003] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M54_metrics [2025-08-04 08:51:35,009] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M54_metrics [2025-08-04 08:51:35,060] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M64_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:51:35,063] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M64_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:51:35,191] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M64_hist.pdf [2025-08-04 08:51:35,215] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M64_metrics [2025-08-04 08:51:35,219] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M64_metrics [2025-08-04 08:51:35,219] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M64_metrics [2025-08-04 08:51:35,219] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M64_metrics [2025-08-04 08:51:35,227] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M64_metrics [2025-08-04 08:51:35,329] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:35,333] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:35,333] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:35,333] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:35,340] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:35,340] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:35,340] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:35,340] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:35,340] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:35,340] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:35,340] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:35,340] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:35,361] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:36,306] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:36,311] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:36,312] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:36,312] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:36,319] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:36,319] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:36,319] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:36,319] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:36,319] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:36,319] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:36,319] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:36,319] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:36,339] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M64_featureCounts.out [2025-08-04 08:51:37,218] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M64_metrics [2025-08-04 08:51:37,221] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M64_metrics [2025-08-04 08:51:37,244] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M64_metrics [2025-08-04 08:51:37,301] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M42_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:51:37,304] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M42_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:51:37,481] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M42_metrics [2025-08-04 08:51:37,484] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M42_metrics [2025-08-04 08:51:37,485] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M42_metrics [2025-08-04 08:51:37,485] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M42_metrics [2025-08-04 08:51:37,492] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M42_metrics [2025-08-04 08:51:37,542] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M42_hist.pdf [2025-08-04 08:51:37,577] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:37,581] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:37,582] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:37,582] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:37,586] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:37,587] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:37,587] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:37,587] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:37,587] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:37,587] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:37,587] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:37,587] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:37,607] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:38,547] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:38,551] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:38,552] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:38,552] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:38,557] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:38,557] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:38,557] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:38,557] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:38,557] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:38,557] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:38,557] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:38,558] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:38,578] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M42_featureCounts.out [2025-08-04 08:51:39,494] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M42_metrics [2025-08-04 08:51:39,497] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M42_metrics [2025-08-04 08:51:39,503] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M42_metrics [2025-08-04 08:51:39,557] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M52_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:51:39,559] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M52_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:51:39,689] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M52_metrics [2025-08-04 08:51:39,693] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M52_metrics [2025-08-04 08:51:39,694] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M52_metrics [2025-08-04 08:51:39,694] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M52_metrics [2025-08-04 08:51:39,699] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M52_metrics [2025-08-04 08:51:39,744] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M52_hist.pdf [2025-08-04 08:51:39,796] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:39,800] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:39,801] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:39,801] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:39,807] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:39,807] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:39,807] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:39,807] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:39,807] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:39,807] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:39,807] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:39,807] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:39,829] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:40,776] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:40,781] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:40,781] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:40,781] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:40,787] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:40,787] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:40,787] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:40,787] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:40,788] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:40,788] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:40,788] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:40,788] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:40,809] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M52_featureCounts.out [2025-08-04 08:51:41,692] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M52_metrics [2025-08-04 08:51:41,695] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M52_metrics [2025-08-04 08:51:41,701] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M52_metrics [2025-08-04 08:51:41,760] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M62_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:51:41,763] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M62_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:51:41,904] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M62_metrics [2025-08-04 08:51:41,906] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M62_metrics [2025-08-04 08:51:41,907] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M62_metrics [2025-08-04 08:51:41,907] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M62_metrics [2025-08-04 08:51:41,911] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M62_metrics [2025-08-04 08:51:41,951] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M62_hist.pdf [2025-08-04 08:51:41,980] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:41,984] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:41,984] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:41,984] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:41,991] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:41,991] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:41,991] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:41,991] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:41,991] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:41,991] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:41,991] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:41,991] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:42,012] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:42,965] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:42,968] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:42,969] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:42,969] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:42,975] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:42,975] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:42,975] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:42,975] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:42,975] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:42,975] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:42,975] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:42,975] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:42,996] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M62_featureCounts.out [2025-08-04 08:51:43,913] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M62_metrics [2025-08-04 08:51:43,915] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M62_metrics [2025-08-04 08:51:43,919] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M62_metrics [2025-08-04 08:51:43,972] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M01_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:51:43,975] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M01_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:51:44,107] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M01_metrics [2025-08-04 08:51:44,109] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M01_metrics [2025-08-04 08:51:44,109] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M01_metrics [2025-08-04 08:51:44,109] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M01_metrics [2025-08-04 08:51:44,114] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M01_metrics [2025-08-04 08:51:44,169] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M01_hist.pdf [2025-08-04 08:51:44,175] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:44,177] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:44,177] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:44,177] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:44,181] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:44,181] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:44,181] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:44,181] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:44,181] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:44,181] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:44,181] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:44,181] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:44,257] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:45,214] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:45,217] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:45,218] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:45,218] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:45,223] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:45,223] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:45,224] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:45,224] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:45,224] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:45,224] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:45,224] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:45,224] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:45,243] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M01_featureCounts.out [2025-08-04 08:51:46,160] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M01_metrics [2025-08-04 08:51:46,164] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M01_metrics [2025-08-04 08:51:46,171] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M01_metrics [2025-08-04 08:51:46,240] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M11_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:51:46,243] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M11_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:51:46,399] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M11_hist.pdf [2025-08-04 08:51:46,422] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M11_metrics [2025-08-04 08:51:46,426] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M11_metrics [2025-08-04 08:51:46,426] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M11_metrics [2025-08-04 08:51:46,426] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M11_metrics [2025-08-04 08:51:46,432] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M11_metrics [2025-08-04 08:51:46,556] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:46,560] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:46,560] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:46,560] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:46,567] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:46,567] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:46,567] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:46,567] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:46,567] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:46,567] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:46,567] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:46,567] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:46,586] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:47,521] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:47,526] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:47,537] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:47,537] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:47,543] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:47,543] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:47,543] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:47,543] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:47,544] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:47,544] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:47,544] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:47,544] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:47,622] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M11_featureCounts.out [2025-08-04 08:51:48,539] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M11_metrics [2025-08-04 08:51:48,541] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M11_metrics [2025-08-04 08:51:48,545] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M11_metrics [2025-08-04 08:51:48,595] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M21_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:51:48,597] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M21_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:51:48,723] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M21_hist.pdf [2025-08-04 08:51:48,761] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M21_metrics [2025-08-04 08:51:48,765] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M21_metrics [2025-08-04 08:51:48,766] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M21_metrics [2025-08-04 08:51:48,766] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M21_metrics [2025-08-04 08:51:48,771] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M21_metrics [2025-08-04 08:51:48,889] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:48,893] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:48,893] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:48,893] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:48,899] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:48,899] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:48,899] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:48,899] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:48,900] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:48,900] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:48,900] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:48,900] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:48,920] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:49,853] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:49,857] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:49,857] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:49,857] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:49,863] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:49,864] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:49,864] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:49,864] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:49,864] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:49,864] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:49,864] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:49,864] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:49,885] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M21_featureCounts.out [2025-08-04 08:51:50,776] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M21_metrics [2025-08-04 08:51:50,779] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M21_metrics [2025-08-04 08:51:50,782] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M21_metrics [2025-08-04 08:51:50,831] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M04A_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:51:50,833] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M04A_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:51:50,957] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:50,961] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:50,961] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:50,961] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:50,966] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:50,966] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:50,966] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:50,966] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:50,967] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:50,967] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:50,967] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:50,967] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:51,042] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:51,945] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:51,947] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:51,948] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:51,948] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:51,952] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:51,952] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:51,952] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:51,952] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:51,952] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:51,953] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:51,953] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:51,953] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:52,018] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M04AD_featureCounts.out [2025-08-04 08:51:52,937] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M04A_CKDL240003768-1A_22JKTWLT3_L7_1.fq.gz [2025-08-04 08:51:52,939] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M04A_CKDL240003768-1A_22JKTWLT3_L7_2.fq.gz [2025-08-04 08:51:53,081] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M04A_metrics [2025-08-04 08:51:53,084] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M04A_metrics [2025-08-04 08:51:53,084] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M04A_metrics [2025-08-04 08:51:53,084] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M04A_metrics [2025-08-04 08:51:53,090] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M04A_metrics [2025-08-04 08:51:53,137] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G221_M04A_hist.pdf [2025-08-04 08:51:53,181] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M04A_featureCounts.out [2025-08-04 08:51:53,184] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M04A_featureCounts.out [2025-08-04 08:51:53,185] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M04A_featureCounts.out [2025-08-04 08:51:53,185] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M04A_featureCounts.out [2025-08-04 08:51:53,190] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M04A_featureCounts.out [2025-08-04 08:51:53,190] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: 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08:51:53,262] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M04A_featureCounts.out [2025-08-04 08:51:54,217] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M04A_featureCounts.out [2025-08-04 08:51:54,221] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G221_M04A_featureCounts.out [2025-08-04 08:51:54,221] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G221_M04A_featureCounts.out [2025-08-04 08:51:54,221] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M04A_featureCounts.out [2025-08-04 08:51:54,227] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G221_M04A_featureCounts.out [2025-08-04 08:51:54,227] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G221_M04A_featureCounts.out [2025-08-04 08:51:54,227] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M04A_featureCounts.out [2025-08-04 08:51:54,227] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G221_M04A_featureCounts.out [2025-08-04 08:51:54,227] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G221_M04A_featureCounts.out [2025-08-04 08:51:54,227] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G221_M04A_featureCounts.out [2025-08-04 08:51:54,227] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G221_M04A_featureCounts.out [2025-08-04 08:51:54,227] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G221_M04A_featureCounts.out [2025-08-04 08:51:54,250] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G221_M04A_featureCounts.out [2025-08-04 08:51:55,126] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G221_M04A_metrics [2025-08-04 08:51:55,129] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G221_M04A_metrics [2025-08-04 08:51:55,133] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G221_M04A_metrics [2025-08-04 08:51:55,181] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-08-04 08:51:55,184] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-08-04 08:51:55,190] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-08-04 08:51:55,202] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-08-04 08:51:55,206] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-08-04 08:51:55,213] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2025-08-04 08:51:55,231] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2025-08-04 08:51:55,233] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2025-08-04 08:51:55,255] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2025-08-04 08:51:55,257] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2025-08-04 08:51:55,263] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2025-08-04 08:51:55,281] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2025-08-04 08:51:55,285] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2025-08-04 08:51:55,353] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: number_of_unique_reads.csv [2025-08-04 08:51:55,356] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: number_of_unique_reads.csv [2025-08-04 08:51:55,357] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: number_of_unique_reads.csv [2025-08-04 08:51:55,357] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: number_of_unique_reads.csv [2025-08-04 08:51:55,362] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: number_of_unique_reads.csv [2025-08-04 08:51:55,416] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-08-04 08:51:55,420] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-08-04 08:51:55,420] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-08-04 08:51:55,421] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-08-04 08:51:55,428] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2025-08-04 08:51:55,443] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub 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[2025-08-04 08:51:55,690] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M06.o4807838 [2025-08-04 08:51:55,690] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M06.o4807838 [2025-08-04 08:51:55,697] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M06.o4807838 [2025-08-04 08:51:55,728] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M51.o4807945 [2025-08-04 08:51:55,732] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M51.o4807945 [2025-08-04 08:51:55,733] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M51.o4807945 [2025-08-04 08:51:55,733] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M51.o4807945 [2025-08-04 08:51:55,738] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M51.o4807945 [2025-08-04 08:51:55,774] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M49.o4807942 [2025-08-04 08:51:55,778] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M49.o4807942 [2025-08-04 08:51:55,778] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M49.o4807942 [2025-08-04 08:51:55,778] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M49.o4807942 [2025-08-04 08:51:55,785] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M49.o4807942 [2025-08-04 08:51:55,825] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M63.o4807963 [2025-08-04 08:51:55,829] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M63.o4807963 [2025-08-04 08:51:55,830] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M63.o4807963 [2025-08-04 08:51:55,830] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M63.o4807963 [2025-08-04 08:51:55,838] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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limit: Step_06_G221_RNASEQ_XE96_G221_M45.o4807934 [2025-08-04 08:51:56,528] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M54.o4807949 [2025-08-04 08:51:56,533] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M54.o4807949 [2025-08-04 08:51:56,533] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M54.o4807949 [2025-08-04 08:51:56,533] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M54.o4807949 [2025-08-04 08:51:56,539] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M54.o4807949 [2025-08-04 08:51:56,581] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 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limit: Step_06_G221_RNASEQ_XE96_G221_M47.o4807938 [2025-08-04 08:51:56,838] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M04A.o4807834 [2025-08-04 08:51:56,842] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M04A.o4807834 [2025-08-04 08:51:56,843] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M04A.o4807834 [2025-08-04 08:51:56,843] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M04A.o4807834 [2025-08-04 08:51:56,849] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M04A.o4807834 [2025-08-04 08:51:56,918] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M11.o4807858 [2025-08-04 08:51:56,923] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M11.o4807858 [2025-08-04 08:51:56,923] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M11.o4807858 [2025-08-04 08:51:56,923] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M11.o4807858 [2025-08-04 08:51:56,930] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M11.o4807858 [2025-08-04 08:51:56,969] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M40.o4807922 [2025-08-04 08:51:56,974] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 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limit: Step_06_G221_RNASEQ_XE96_G221_M58.o4807954 [2025-08-04 08:51:57,165] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M56.o4807952 [2025-08-04 08:51:57,169] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M56.o4807952 [2025-08-04 08:51:57,170] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M56.o4807952 [2025-08-04 08:51:57,170] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M56.o4807952 [2025-08-04 08:51:57,175] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M56.o4807952 [2025-08-04 08:51:57,219] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 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limit: Step_06_G221_RNASEQ_XE96_G221_M61.o4807958 [2025-08-04 08:51:57,448] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M09.o4807845 [2025-08-04 08:51:57,452] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M09.o4807845 [2025-08-04 08:51:57,453] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M09.o4807845 [2025-08-04 08:51:57,453] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M09.o4807845 [2025-08-04 08:51:57,458] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M09.o4807845 [2025-08-04 08:51:57,484] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 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limit: Step_06_G221_RNASEQ_XE96_G221_M33.o4807906 [2025-08-04 08:51:57,727] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M64.o4807965 [2025-08-04 08:51:57,730] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M64.o4807965 [2025-08-04 08:51:57,731] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M64.o4807965 [2025-08-04 08:51:57,731] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M64.o4807965 [2025-08-04 08:51:57,738] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M64.o4807965 [2025-08-04 08:51:57,783] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 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limit: Step_06_G221_RNASEQ_XE96_G221_M67.o4807972 [2025-08-04 08:51:58,355] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M12.o4807860 [2025-08-04 08:51:58,359] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M12.o4807860 [2025-08-04 08:51:58,359] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M12.o4807860 [2025-08-04 08:51:58,360] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M12.o4807860 [2025-08-04 08:51:58,366] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M12.o4807860 [2025-08-04 08:51:58,392] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: 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limit: Step_06_G221_RNASEQ_XE96_G221_M13.o4807862 [2025-08-04 08:51:58,689] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M30.o4807900 [2025-08-04 08:51:58,694] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M30.o4807900 [2025-08-04 08:51:58,694] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M30.o4807900 [2025-08-04 08:51:58,694] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M30.o4807900 [2025-08-04 08:51:58,700] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M30.o4807900 [2025-08-04 08:51:58,742] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M66.o4807970 [2025-08-04 08:51:58,747] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M66.o4807970 [2025-08-04 08:51:58,747] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M66.o4807970 [2025-08-04 08:51:58,747] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M66.o4807970 [2025-08-04 08:51:58,753] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M66.o4807970 [2025-08-04 08:51:58,786] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M04.o4807832 [2025-08-04 08:51:58,789] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M04.o4807832 [2025-08-04 08:51:58,789] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M04.o4807832 [2025-08-04 08:51:58,789] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M04.o4807832 [2025-08-04 08:51:58,794] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M04.o4807832 [2025-08-04 08:51:58,832] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M05A.o4807846 [2025-08-04 08:51:58,836] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M05A.o4807846 [2025-08-04 08:51:58,837] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M05A.o4807846 [2025-08-04 08:51:58,837] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M05A.o4807846 [2025-08-04 08:51:58,845] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M05A.o4807846 [2025-08-04 08:51:58,883] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M53.o4807948 [2025-08-04 08:51:58,887] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M53.o4807948 [2025-08-04 08:51:58,888] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M53.o4807948 [2025-08-04 08:51:58,888] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M53.o4807948 [2025-08-04 08:51:58,895] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M53.o4807948 [2025-08-04 08:51:58,941] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M35.o4807911 [2025-08-04 08:51:58,945] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M35.o4807911 [2025-08-04 08:51:58,946] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M35.o4807911 [2025-08-04 08:51:58,946] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M35.o4807911 [2025-08-04 08:51:58,952] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M35.o4807911 [2025-08-04 08:51:58,967] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M46.o4807936 [2025-08-04 08:51:58,970] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M46.o4807936 [2025-08-04 08:51:58,970] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M46.o4807936 [2025-08-04 08:51:58,970] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M46.o4807936 [2025-08-04 08:51:58,975] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M46.o4807936 [2025-08-04 08:51:59,025] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M52.o4807946 [2025-08-04 08:51:59,028] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M52.o4807946 [2025-08-04 08:51:59,029] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M52.o4807946 [2025-08-04 08:51:59,029] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M52.o4807946 [2025-08-04 08:51:59,034] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M52.o4807946 [2025-08-04 08:51:59,070] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M18.o4807872 [2025-08-04 08:51:59,073] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M18.o4807872 [2025-08-04 08:51:59,073] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M18.o4807872 [2025-08-04 08:51:59,073] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M18.o4807872 [2025-08-04 08:51:59,080] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M18.o4807872 [2025-08-04 08:51:59,120] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M57.o4807953 [2025-08-04 08:51:59,124] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M57.o4807953 [2025-08-04 08:51:59,125] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M57.o4807953 [2025-08-04 08:51:59,125] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M57.o4807953 [2025-08-04 08:51:59,131] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M57.o4807953 [2025-08-04 08:51:59,173] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M39.o4807920 [2025-08-04 08:51:59,177] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M39.o4807920 [2025-08-04 08:51:59,178] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M39.o4807920 [2025-08-04 08:51:59,178] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M39.o4807920 [2025-08-04 08:51:59,184] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M39.o4807920 [2025-08-04 08:51:59,222] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M24.o4807887 [2025-08-04 08:51:59,226] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M24.o4807887 [2025-08-04 08:51:59,226] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M24.o4807887 [2025-08-04 08:51:59,226] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M24.o4807887 [2025-08-04 08:51:59,233] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G221_RNASEQ_XE96_G221_M24.o4807887 [2025-08-04 08:51:59,249] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2025-08-04 08:51:59,251] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2025-08-04 08:51:59,251] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2025-08-04 08:51:59,251] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2025-08-04 08:51:59,255] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2025-08-04 08:51:59,266] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2025-08-04 08:51:59,268] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2025-08-04 08:51:59,269] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2025-08-04 08:51:59,269] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2025-08-04 08:51:59,275] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2025-08-04 08:51:59,288] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2025-08-04 08:51:59,325] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2025-08-04 08:51:59,329] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2025-08-04 08:51:59,330] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2025-08-04 08:51:59,330] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2025-08-04 08:51:59,336] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2025-08-04 08:51:59,336] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2025-08-04 08:51:59,336] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2025-08-04 08:51:59,337] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2025-08-04 08:51:59,337] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2025-08-04 08:51:59,337] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2025-08-04 08:51:59,337] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2025-08-04 08:51:59,337] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2025-08-04 08:51:59,337] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2025-08-04 08:51:59,337] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2025-08-04 08:52:00,167] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-04 08:52:00,172] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-04 08:52:00,172] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-04 08:52:00,172] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-04 08:52:00,178] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2025-08-04 08:52:00,245] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-04 08:52:00,249] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-04 08:52:00,249] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-04 08:52:00,250] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-04 08:52:00,256] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2025-08-04 08:52:03,985] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2025-08-04 08:52:03,995] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2025-08-04 08:52:03,999] multiqc [DEBUG ] No samples found: custom_content [2025-08-04 08:52:04,011] multiqc [DEBUG ] No samples found: ccs [2025-08-04 08:52:04,042] multiqc [DEBUG ] No samples found: ngsderive [2025-08-04 08:52:04,084] multiqc [DEBUG ] No samples found: purple [2025-08-04 08:52:04,094] multiqc [DEBUG ] No samples found: conpair [2025-08-04 08:52:04,136] multiqc [DEBUG ] No samples found: lima [2025-08-04 08:52:04,164] multiqc [DEBUG ] No samples found: peddy [2025-08-04 08:52:04,178] multiqc [DEBUG ] No samples found: somalier [2025-08-04 08:52:04,208] multiqc [DEBUG ] No samples found: methylQA [2025-08-04 08:52:04,261] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2025-08-04 08:52:04,262] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2025-08-04 08:52:04,262] multiqc [DEBUG ] No samples found: mosdepth [2025-08-04 08:52:04,272] multiqc [DEBUG ] No samples found: phantompeakqualtools [2025-08-04 08:52:04,308] multiqc [DEBUG ] No samples found: qualimap [2025-08-04 08:52:04,338] multiqc [DEBUG ] No samples found: preseq [2025-08-04 08:52:04,358] multiqc [DEBUG ] No samples found: quast [2025-08-04 08:52:04,386] multiqc [DEBUG ] No samples found: qorts [2025-08-04 08:52:04,415] multiqc [DEBUG ] No samples found: rna_seqc [2025-08-04 08:52:04,432] multiqc [DEBUG ] No samples found: rockhopper [2025-08-04 08:52:04,464] multiqc [DEBUG ] No samples found: rsem [2025-08-04 08:52:04,570] multiqc.modules.rseqc.rseqc [INFO ] Found 76 infer_experiment reports [2025-08-04 08:52:04,593] multiqc [DEBUG ] No samples found: busco [2025-08-04 08:52:04,612] multiqc [DEBUG ] No samples found: bustools [2025-08-04 08:52:04,645] multiqc [DEBUG ] No samples found: goleft_indexcov [2025-08-04 08:52:04,682] multiqc [DEBUG ] No samples found: gffcompare [2025-08-04 08:52:04,692] multiqc [DEBUG ] No samples found: disambiguate [2025-08-04 08:52:04,737] multiqc [DEBUG ] No samples found: supernova [2025-08-04 08:52:04,852] multiqc [DEBUG ] No samples found: deeptools [2025-08-04 08:52:04,911] multiqc [DEBUG ] No samples found: sargasso [2025-08-04 08:52:04,931] multiqc [DEBUG ] No samples found: verifybamid [2025-08-04 08:52:04,969] multiqc [DEBUG ] No samples found: mirtrace [2025-08-04 08:52:04,981] multiqc [DEBUG ] No samples found: happy [2025-08-04 08:52:04,993] multiqc [DEBUG ] No samples found: mirtop [2025-08-04 08:52:05,021] multiqc [DEBUG ] No samples found: sambamba [2025-08-04 08:52:05,048] multiqc [DEBUG ] No samples found: homer [2025-08-04 08:52:05,072] multiqc [DEBUG ] No samples found: hops [2025-08-04 08:52:05,083] multiqc [DEBUG ] No samples found: macs2 [2025-08-04 08:52:05,091] multiqc [DEBUG ] No samples found: theta2 [2025-08-04 08:52:05,123] multiqc [DEBUG ] No samples found: snpeff [2025-08-04 08:52:05,163] multiqc [DEBUG ] No samples found: gatk [2025-08-04 08:52:05,174] multiqc [DEBUG ] No samples found: htseq [2025-08-04 08:52:05,231] multiqc [DEBUG ] No samples found: bcftools [2025-08-04 08:52:05,272] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M09_sorted [2025-08-04 08:52:05,274] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M07_sorted [2025-08-04 08:52:05,276] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M17_sorted [2025-08-04 08:52:05,278] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M27_sorted [2025-08-04 08:52:05,280] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M06A_sorted [2025-08-04 08:52:05,282] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M37_sorted [2025-08-04 08:52:05,284] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M47_sorted [2025-08-04 08:52:05,286] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M25_sorted [2025-08-04 08:52:05,288] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M35_sorted [2025-08-04 08:52:05,289] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M45_sorted [2025-08-04 08:52:05,291] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M55_sorted [2025-08-04 08:52:05,294] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M65_sorted [2025-08-04 08:52:05,296] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M63_sorted [2025-08-04 08:52:05,298] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M02_sorted [2025-08-04 08:52:05,300] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M12_sorted [2025-08-04 08:52:05,302] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M22_sorted [2025-08-04 08:52:05,304] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M32_sorted [2025-08-04 08:52:05,306] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M10_sorted [2025-08-04 08:52:05,307] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M20_sorted [2025-08-04 08:52:05,309] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M30_sorted [2025-08-04 08:52:05,311] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M40_sorted [2025-08-04 08:52:05,313] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M50_sorted [2025-08-04 08:52:05,315] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M60_sorted [2025-08-04 08:52:05,317] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M06AD_sorted [2025-08-04 08:52:05,319] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M05A_sorted [2025-08-04 08:52:05,321] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M07AD_sorted [2025-08-04 08:52:05,323] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M07A_sorted [2025-08-04 08:52:05,325] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M08_sorted [2025-08-04 08:52:05,327] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M18_sorted [2025-08-04 08:52:05,330] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M28_sorted [2025-08-04 08:52:05,332] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M38_sorted [2025-08-04 08:52:05,334] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M48_sorted [2025-08-04 08:52:05,336] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M58_sorted [2025-08-04 08:52:05,338] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M68_sorted [2025-08-04 08:52:05,341] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M46_sorted [2025-08-04 08:52:05,343] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M56_sorted [2025-08-04 08:52:05,345] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M66_sorted [2025-08-04 08:52:05,347] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M05AD_sorted [2025-08-04 08:52:05,349] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M05_sorted [2025-08-04 08:52:05,351] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M15_sorted [2025-08-04 08:52:05,353] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M03_sorted [2025-08-04 08:52:05,355] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M13_sorted [2025-08-04 08:52:05,358] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M23_sorted [2025-08-04 08:52:05,360] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M33_sorted [2025-08-04 08:52:05,362] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M43_sorted [2025-08-04 08:52:05,364] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M53_sorted [2025-08-04 08:52:05,365] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M31_sorted [2025-08-04 08:52:05,368] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M41_sorted [2025-08-04 08:52:05,369] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M51_sorted [2025-08-04 08:52:05,371] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M61_sorted [2025-08-04 08:52:05,373] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M19_sorted [2025-08-04 08:52:05,375] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M29_sorted [2025-08-04 08:52:05,377] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M39_sorted [2025-08-04 08:52:05,380] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M49_sorted [2025-08-04 08:52:05,381] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M59_sorted [2025-08-04 08:52:05,382] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M57_sorted [2025-08-04 08:52:05,384] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M67_sorted [2025-08-04 08:52:05,385] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M06_sorted [2025-08-04 08:52:05,386] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M16_sorted [2025-08-04 08:52:05,387] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M26_sorted [2025-08-04 08:52:05,388] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M36_sorted [2025-08-04 08:52:05,389] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M04_sorted [2025-08-04 08:52:05,390] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M14_sorted [2025-08-04 08:52:05,390] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M24_sorted [2025-08-04 08:52:05,392] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M34_sorted [2025-08-04 08:52:05,393] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M44_sorted [2025-08-04 08:52:05,394] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M54_sorted [2025-08-04 08:52:05,395] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M64_sorted [2025-08-04 08:52:05,395] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M42_sorted [2025-08-04 08:52:05,396] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M52_sorted [2025-08-04 08:52:05,397] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M62_sorted [2025-08-04 08:52:05,398] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M01_sorted [2025-08-04 08:52:05,399] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M11_sorted [2025-08-04 08:52:05,400] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M21_sorted [2025-08-04 08:52:05,401] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M04AD_sorted [2025-08-04 08:52:05,401] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G221_M04A_sorted [2025-08-04 08:52:05,402] multiqc.modules.featureCounts.feature_counts [INFO ] Found 76 reports [2025-08-04 08:52:05,502] multiqc [DEBUG ] No samples found: fgbio [2025-08-04 08:52:05,654] multiqc [DEBUG ] No samples found: dragen [2025-08-04 08:52:05,684] multiqc [DEBUG ] No samples found: dedup [2025-08-04 08:52:05,727] multiqc [DEBUG ] No samples found: damageprofiler [2025-08-04 08:52:05,957] multiqc [DEBUG ] No samples found: biobambam2 [2025-08-04 08:52:05,984] multiqc [DEBUG ] No samples found: jcvi [2025-08-04 08:52:05,993] multiqc [DEBUG ] No samples found: mtnucratio [2025-08-04 08:52:08,171] multiqc.modules.picard.picard [INFO ] Found 72 InsertSizeMetrics reports [2025-08-04 08:52:08,262] multiqc.modules.picard.picard [INFO ] Found 72 RnaSeqMetrics reports [2025-08-04 08:52:08,297] multiqc [DEBUG ] No samples found: vep [2025-08-04 08:52:08,339] multiqc [DEBUG ] No samples found: sentieon [2025-08-04 08:52:08,356] multiqc [DEBUG ] No samples found: prokka [2025-08-04 08:52:08,379] multiqc [DEBUG ] No samples found: qc3C [2025-08-04 08:52:08,408] multiqc [DEBUG ] No samples found: nanostat [2025-08-04 08:52:08,419] multiqc [DEBUG ] No samples found: samblaster [2025-08-04 08:52:08,490] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,494] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,508] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,511] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,515] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,519] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,522] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,524] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,526] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,527] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,529] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,531] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,534] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,537] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,540] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,543] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,546] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,547] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,548] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,550] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,554] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,556] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,560] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,562] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,565] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,567] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,568] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,570] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,572] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,574] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,576] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,579] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,582] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,587] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,588] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,590] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,592] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,594] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,598] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,599] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,602] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,605] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,606] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,608] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,610] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,612] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,615] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,616] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,618] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,621] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,622] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,625] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,626] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,628] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,630] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,631] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,633] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,634] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,636] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,637] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,638] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,639] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,641] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,642] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,644] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,645] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2025-08-04 08:52:08,664] multiqc.modules.samtools.samtools [INFO ] Found 229 flagstat reports [2025-08-04 08:52:08,685] multiqc [DEBUG ] No samples found: sexdeterrmine [2025-08-04 08:52:08,695] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2025-08-04 08:52:08,705] multiqc [DEBUG ] No samples found: bamtools [2025-08-04 08:52:08,712] multiqc [DEBUG ] No samples found: jellyfish [2025-08-04 08:52:08,724] multiqc [DEBUG ] No samples found: vcftools [2025-08-04 08:52:08,733] multiqc [DEBUG ] No samples found: longranger [2025-08-04 08:52:08,758] multiqc [DEBUG ] No samples found: stacks [2025-08-04 08:52:08,770] multiqc [DEBUG ] No samples found: varscan2 [2025-08-04 08:52:08,812] multiqc [DEBUG ] No samples found: snippy [2025-08-04 08:52:08,896] multiqc [DEBUG ] No samples found: bbmap [2025-08-04 08:52:08,933] multiqc [DEBUG ] No samples found: bismark [2025-08-04 08:52:08,969] multiqc [DEBUG ] No samples found: biscuit [2025-08-04 08:52:08,980] multiqc [DEBUG ] No samples found: hicexplorer [2025-08-04 08:52:09,008] multiqc [DEBUG ] No samples found: hicup [2025-08-04 08:52:09,036] multiqc [DEBUG ] No samples found: hicpro [2025-08-04 08:52:09,047] multiqc [DEBUG ] No samples found: salmon [2025-08-04 08:52:09,056] multiqc [DEBUG ] No samples found: kallisto [2025-08-04 08:52:09,096] multiqc [DEBUG ] No samples found: slamdunk [2025-08-04 08:52:09,216] multiqc.modules.star.star [INFO ] Found 76 reports [2025-08-04 08:52:09,228] multiqc [DEBUG ] No samples found: hisat2 [2025-08-04 08:52:09,249] multiqc [DEBUG ] No samples found: tophat [2025-08-04 08:52:09,286] multiqc [DEBUG ] No samples found: bowtie2 [2025-08-04 08:52:09,300] multiqc [DEBUG ] No samples found: bowtie1 [2025-08-04 08:52:09,324] multiqc [DEBUG ] No samples found: snpsplit [2025-08-04 08:52:09,346] multiqc [DEBUG ] No samples found: odgi [2025-08-04 08:52:09,358] multiqc [DEBUG ] No samples found: pangolin [2025-08-04 08:52:09,367] multiqc [DEBUG ] No samples found: kat [2025-08-04 08:52:09,374] multiqc [DEBUG ] No samples found: leehom [2025-08-04 08:52:09,400] multiqc [DEBUG ] No samples found: adapterRemoval [2025-08-04 08:52:09,409] multiqc [DEBUG ] No samples found: clipandmerge [2025-08-04 08:52:09,443] multiqc [DEBUG ] No samples found: cutadapt [2025-08-04 08:52:09,453] multiqc [DEBUG ] No samples found: flexbar [2025-08-04 08:52:09,463] multiqc [DEBUG ] No samples found: kaiju [2025-08-04 08:52:09,487] multiqc [DEBUG ] No samples found: kraken [2025-08-04 08:52:09,498] multiqc [DEBUG ] No samples found: malt [2025-08-04 08:52:09,531] multiqc [DEBUG ] No samples found: trimmomatic [2025-08-04 08:52:09,542] multiqc [DEBUG ] No samples found: sickle [2025-08-04 08:52:09,578] multiqc [DEBUG ] No samples found: skewer [2025-08-04 08:52:09,589] multiqc [DEBUG ] No samples found: sortmerna [2025-08-04 08:52:09,598] multiqc [DEBUG ] No samples found: biobloomtools [2025-08-04 08:52:09,622] multiqc [DEBUG ] No samples found: fastq_screen [2025-08-04 08:52:09,655] multiqc [DEBUG ] No samples found: afterqc [2025-08-04 08:52:09,684] multiqc [DEBUG ] No samples found: fastp [2025-08-04 08:52:09,720] multiqc [DEBUG ] No samples found: fastqc [2025-08-04 08:52:09,730] multiqc [DEBUG ] No samples found: pychopper [2025-08-04 08:52:09,766] multiqc [DEBUG ] No samples found: pycoqc [2025-08-04 08:52:09,787] multiqc [DEBUG ] No samples found: minionqc [2025-08-04 08:52:09,817] multiqc [DEBUG ] No samples found: multivcfanalyzer [2025-08-04 08:52:09,841] multiqc [DEBUG ] No samples found: clusterflow [2025-08-04 08:52:09,871] multiqc [DEBUG ] No samples found: bcl2fastq [2025-08-04 08:52:09,895] multiqc [DEBUG ] No samples found: bclconvert [2025-08-04 08:52:09,927] multiqc [DEBUG ] No samples found: interop [2025-08-04 08:52:09,963] multiqc [DEBUG ] No samples found: ivar [2025-08-04 08:52:09,996] multiqc [DEBUG ] No samples found: flash [2025-08-04 08:52:10,019] multiqc [DEBUG ] No samples found: seqyclean [2025-08-04 08:52:10,029] multiqc [DEBUG ] No samples found: optitype [2025-08-04 08:52:10,201] multiqc [INFO ] Compressing plot data [2025-08-04 08:52:12,235] multiqc [INFO ] Report : multiqc_report.html [2025-08-04 08:52:12,235] multiqc [INFO ] Data : multiqc_data [2025-08-04 08:52:12,236] multiqc [DEBUG ] Moving data file from '/scratch/tmppmz772et/multiqc_data' to '/projectnb/wax-dk/max/G221_RNASEQ_XE96/Scripts/99_final_summary/G221_RNASEQ_XE96_new20250606_multiqc_report/multiqc_data' [2025-08-04 08:52:13,253] multiqc [INFO ] MultiQC complete