Module	Section	Sample Name	Source
RSeQC	infer_experiment	G216_M68_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M68/Read_Strandness/G216_M68_Read_Strandness.txt
RSeQC	infer_experiment	G216_M07_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M07/Read_Strandness/G216_M07_Read_Strandness.txt
RSeQC	infer_experiment	G216_M42_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M42/Read_Strandness/G216_M42_Read_Strandness.txt
RSeQC	infer_experiment	G216_M64_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M64/Read_Strandness/G216_M64_Read_Strandness.txt
RSeQC	infer_experiment	G216_M03_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M03/Read_Strandness/G216_M03_Read_Strandness.txt
RSeQC	infer_experiment	G216_M47_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M47/Read_Strandness/G216_M47_Read_Strandness.txt
RSeQC	infer_experiment	G216_M71_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M71/Read_Strandness/G216_M71_Read_Strandness.txt
RSeQC	infer_experiment	G216_M10_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M10/Read_Strandness/G216_M10_Read_Strandness.txt
RSeQC	infer_experiment	G216_M69_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M69/Read_Strandness/G216_M69_Read_Strandness.txt
RSeQC	infer_experiment	G216_M08_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M08/Read_Strandness/G216_M08_Read_Strandness.txt
RSeQC	infer_experiment	G216_M43_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M43/Read_Strandness/G216_M43_Read_Strandness.txt
RSeQC	infer_experiment	G216_M65_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M65/Read_Strandness/G216_M65_Read_Strandness.txt
RSeQC	infer_experiment	G216_M04_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M04/Read_Strandness/G216_M04_Read_Strandness.txt
RSeQC	infer_experiment	G216_M37_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M37/Read_Strandness/G216_M37_Read_Strandness.txt
RSeQC	infer_experiment	G216_M48_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M48/Read_Strandness/G216_M48_Read_Strandness.txt
RSeQC	infer_experiment	G216_M61_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M61/Read_Strandness/G216_M61_Read_Strandness.txt
RSeQC	infer_experiment	G216_M11_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M11/Read_Strandness/G216_M11_Read_Strandness.txt
RSeQC	infer_experiment	G216_M09_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M09/Read_Strandness/G216_M09_Read_Strandness.txt
RSeQC	infer_experiment	G216_M44_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M44/Read_Strandness/G216_M44_Read_Strandness.txt
RSeQC	infer_experiment	G216_M05_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M05/Read_Strandness/G216_M05_Read_Strandness.txt
RSeQC	infer_experiment	G216_M38_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M38/Read_Strandness/G216_M38_Read_Strandness.txt
RSeQC	infer_experiment	G216_M01_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M01/Read_Strandness/G216_M01_Read_Strandness.txt
RSeQC	infer_experiment	G216_M12_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M12/Read_Strandness/G216_M12_Read_Strandness.txt
RSeQC	infer_experiment	G216_M06_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M06/Read_Strandness/G216_M06_Read_Strandness.txt
RSeQC	infer_experiment	G216_M72_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M72/Read_Strandness/G216_M72_Read_Strandness.txt
RSeQC	infer_experiment	G216_M66_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M66/Read_Strandness/G216_M66_Read_Strandness.txt
RSeQC	infer_experiment	G216_M40_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M40/Read_Strandness/G216_M40_Read_Strandness.txt
RSeQC	infer_experiment	G216_M62_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M62/Read_Strandness/G216_M62_Read_Strandness.txt
RSeQC	infer_experiment	G216_M45_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M45/Read_Strandness/G216_M45_Read_Strandness.txt
RSeQC	infer_experiment	G216_M67_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M67/Read_Strandness/G216_M67_Read_Strandness.txt
RSeQC	infer_experiment	G216_M41_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M41/Read_Strandness/G216_M41_Read_Strandness.txt
RSeQC	infer_experiment	G216_M39_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M39/Read_Strandness/G216_M39_Read_Strandness.txt
RSeQC	infer_experiment	G216_M63_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M63/Read_Strandness/G216_M63_Read_Strandness.txt
RSeQC	infer_experiment	G216_M02_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M02/Read_Strandness/G216_M02_Read_Strandness.txt
RSeQC	infer_experiment	G216_M46_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M46/Read_Strandness/G216_M46_Read_Strandness.txt
RSeQC	infer_experiment	G216_M70_Read_Strandness	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M70/Read_Strandness/G216_M70_Read_Strandness.txt
featureCounts	all_sections	G216_M68_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M68/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M68_featureCounts.out.summary
featureCounts	all_sections	G216_M07_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M07/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M07_featureCounts.out.summary
featureCounts	all_sections	G216_M42_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M42/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M42_featureCounts.out.summary
featureCounts	all_sections	G216_M64_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M64/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M64_featureCounts.out.summary
featureCounts	all_sections	G216_M03_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M03/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M03_featureCounts.out.summary
featureCounts	all_sections	G216_M47_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M47/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M47_featureCounts.out.summary
featureCounts	all_sections	G216_M71_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M71/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M71_featureCounts.out.summary
featureCounts	all_sections	G216_M10_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M10/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M10_featureCounts.out.summary
featureCounts	all_sections	G216_M69_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M69/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M69_featureCounts.out.summary
featureCounts	all_sections	G216_M08_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M08/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M08_featureCounts.out.summary
featureCounts	all_sections	G216_M43_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M43/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M43_featureCounts.out.summary
featureCounts	all_sections	G216_M65_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M65/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M65_featureCounts.out.summary
featureCounts	all_sections	G216_M04_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M04/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M04_featureCounts.out.summary
featureCounts	all_sections	G216_M37_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M37/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M37_featureCounts.out.summary
featureCounts	all_sections	G216_M48_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M48/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M48_featureCounts.out.summary
featureCounts	all_sections	G216_M61_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M61/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M61_featureCounts.out.summary
featureCounts	all_sections	G216_M11_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M11/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M11_featureCounts.out.summary
featureCounts	all_sections	G216_M09_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M09/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M09_featureCounts.out.summary
featureCounts	all_sections	G216_M44_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M44/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M44_featureCounts.out.summary
featureCounts	all_sections	G216_M05_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M05/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M05_featureCounts.out.summary
featureCounts	all_sections	G216_M38_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M38/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M38_featureCounts.out.summary
featureCounts	all_sections	G216_M01_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M01/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M01_featureCounts.out.summary
featureCounts	all_sections	G216_M12_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M12/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M12_featureCounts.out.summary
featureCounts	all_sections	G216_M06_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M06/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M06_featureCounts.out.summary
featureCounts	all_sections	G216_M72_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M72/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M72_featureCounts.out.summary
featureCounts	all_sections	G216_M66_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M66/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M66_featureCounts.out.summary
featureCounts	all_sections	G216_M40_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M40/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M40_featureCounts.out.summary
featureCounts	all_sections	G216_M62_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M62/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M62_featureCounts.out.summary
featureCounts	all_sections	G216_M45_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M45/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M45_featureCounts.out.summary
featureCounts	all_sections	G216_M67_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M67/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M67_featureCounts.out.summary
featureCounts	all_sections	G216_M41_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M41/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M41_featureCounts.out.summary
featureCounts	all_sections	G216_M39_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M39/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M39_featureCounts.out.summary
featureCounts	all_sections	G216_M63_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M63/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M63_featureCounts.out.summary
featureCounts	all_sections	G216_M02_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M02/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M02_featureCounts.out.summary
featureCounts	all_sections	G216_M46_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M46/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M46_featureCounts.out.summary
featureCounts	all_sections	G216_M70_sorted	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M70/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M70_featureCounts.out.summary
Samtools	flagstat	statistics_for_primary_unique_reads	/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M70/aligner/statistics_for_primary_unique_reads.txt