{ "report_data_sources": { "RSeQC": { "infer_experiment": { "G216_M68_Read_Strandness": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M68/Read_Strandness/G216_M68_Read_Strandness.txt", "G216_M07_Read_Strandness": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M07/Read_Strandness/G216_M07_Read_Strandness.txt", "G216_M42_Read_Strandness": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M42/Read_Strandness/G216_M42_Read_Strandness.txt", "G216_M64_Read_Strandness": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M64/Read_Strandness/G216_M64_Read_Strandness.txt", "G216_M03_Read_Strandness": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M03/Read_Strandness/G216_M03_Read_Strandness.txt", "G216_M47_Read_Strandness": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M47/Read_Strandness/G216_M47_Read_Strandness.txt", "G216_M71_Read_Strandness": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M71/Read_Strandness/G216_M71_Read_Strandness.txt", "G216_M10_Read_Strandness": 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"/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M06/Read_Strandness/G216_M06_Read_Strandness.txt", "G216_M72_Read_Strandness": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M72/Read_Strandness/G216_M72_Read_Strandness.txt", "G216_M66_Read_Strandness": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M66/Read_Strandness/G216_M66_Read_Strandness.txt", "G216_M40_Read_Strandness": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M40/Read_Strandness/G216_M40_Read_Strandness.txt", "G216_M62_Read_Strandness": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M62/Read_Strandness/G216_M62_Read_Strandness.txt", "G216_M45_Read_Strandness": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M45/Read_Strandness/G216_M45_Read_Strandness.txt", "G216_M67_Read_Strandness": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M67/Read_Strandness/G216_M67_Read_Strandness.txt", "G216_M41_Read_Strandness": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M41/Read_Strandness/G216_M41_Read_Strandness.txt", "G216_M39_Read_Strandness": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M39/Read_Strandness/G216_M39_Read_Strandness.txt", "G216_M63_Read_Strandness": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M63/Read_Strandness/G216_M63_Read_Strandness.txt", "G216_M02_Read_Strandness": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M02/Read_Strandness/G216_M02_Read_Strandness.txt", "G216_M46_Read_Strandness": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M46/Read_Strandness/G216_M46_Read_Strandness.txt", "G216_M70_Read_Strandness": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M70/Read_Strandness/G216_M70_Read_Strandness.txt" } }, "featureCounts": { "all_sections": { "G216_M68_sorted": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M68/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M68_featureCounts.out.summary", "G216_M07_sorted": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M07/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M07_featureCounts.out.summary", "G216_M42_sorted": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M42/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M42_featureCounts.out.summary", "G216_M64_sorted": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M64/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M64_featureCounts.out.summary", "G216_M03_sorted": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M03/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M03_featureCounts.out.summary", "G216_M47_sorted": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M47/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M47_featureCounts.out.summary", "G216_M71_sorted": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M71/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M71_featureCounts.out.summary", "G216_M10_sorted": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M10/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M10_featureCounts.out.summary", "G216_M69_sorted": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M69/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M69_featureCounts.out.summary", "G216_M08_sorted": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M08/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M08_featureCounts.out.summary", "G216_M43_sorted": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M43/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M43_featureCounts.out.summary", "G216_M65_sorted": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M65/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M65_featureCounts.out.summary", "G216_M04_sorted": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M04/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M04_featureCounts.out.summary", "G216_M37_sorted": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M37/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M37_featureCounts.out.summary", "G216_M48_sorted": 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"/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M40/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M40_featureCounts.out.summary", "G216_M62_sorted": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M62/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M62_featureCounts.out.summary", "G216_M45_sorted": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M45/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M45_featureCounts.out.summary", "G216_M67_sorted": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M67/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M67_featureCounts.out.summary", "G216_M41_sorted": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M41/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M41_featureCounts.out.summary", "G216_M39_sorted": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M39/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M39_featureCounts.out.summary", "G216_M63_sorted": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M63/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M63_featureCounts.out.summary", "G216_M02_sorted": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M02/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M02_featureCounts.out.summary", "G216_M46_sorted": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M46/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M46_featureCounts.out.summary", "G216_M70_sorted": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M70/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G216_M70_featureCounts.out.summary" } }, "Samtools": { "flagstat": { "statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G216_MM9/SAMPLES/G216_M70/aligner/statistics_for_primary_unique_reads.txt" } } }, "report_general_stats_data": [ { "G216_M68_sorted": { "Total": 12073690, "Assigned": 11391975, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 681715, "Unassigned_Unmapped": 0, 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"G216_M64_sorted": { "Total": 6938941, "Assigned": 6597957, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 340984, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 95.08593602395524 }, "G216_M03_sorted": { "Total": 12231131, "Assigned": 11632545, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 598586, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 95.10604538533681 }, "G216_M47_sorted": { "Total": 6100174, "Assigned": 5869409, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 230765, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, 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"Assigned": 8863149, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 502714, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 94.63248608270268 }, "G216_M08_sorted": { "Total": 9894113, "Assigned": 9412469, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 481644, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 95.13201436045858 }, "G216_M43_sorted": { "Total": 11796327, "Assigned": 11218458, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 577869, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, 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"Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 568566, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 94.42471120463739 }, "G216_M48_sorted": { "Total": 7614840, "Assigned": 7210238, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 404602, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 94.68666446044828 }, "G216_M61_sorted": { "Total": 8122943, "Assigned": 7649646, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 473297, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, 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