[2026-08-24 15:15:08,054] multiqc [DEBUG ] This is MultiQC v1.11 [2026-08-24 15:15:08,054] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2026-08-24 15:15:08,054] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2026-08-24 15:15:08,055] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2026-08-24 15:15:08,056] multiqc [DEBUG ] Loading config settings from: /projectnb2/wax-dk/max/G216_MM9/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2026-08-24 15:15:08,056] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2026-08-24 15:15:08,056] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2026-08-24 15:15:08,056] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G216_MM9/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G216_MM9/SAMPLES /projectnb2/wax-dk/max/G216_MM9/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G216_MM9/Scripts/06_CollectMetrics/ [2026-08-24 15:15:09,273] multiqc [WARNING] MultiQC Version v1.35 now available! [2026-08-24 15:15:09,273] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb2/wax-dk/max/G216_MM9/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G216_MM9/SAMPLES /projectnb2/wax-dk/max/G216_MM9/Scripts/03_FASTQC/ /projectnb2/wax-dk/max/G216_MM9/Scripts/06_CollectMetrics/ [2026-08-24 15:15:09,273] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G216_MM9/Scripts/99_final_summary/G216_MM9_multiqc_report [2026-08-24 15:15:09,273] multiqc [DEBUG ] Template : default [2026-08-24 15:15:09,274] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2026-08-24 15:15:09,274] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2026-08-24 15:15:09,286] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmp9pph4ygs [2026-08-24 15:15:09,790] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G216_MM9/SAMPLES [2026-08-24 15:15:09,791] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G216_MM9/Scripts/03_FASTQC [2026-08-24 15:15:09,791] multiqc [INFO ] Search path : /projectnb2/wax-dk/max/G216_MM9/Scripts/06_CollectMetrics [2026-08-24 15:15:10,281] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M68_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:15:10,281] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M68_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:15:10,378] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:10,383] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:10,384] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:10,384] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:10,391] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:10,391] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:10,391] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:10,391] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:10,391] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:10,391] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:10,391] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:10,392] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:10,413] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:11,400] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:11,402] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:11,403] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:11,403] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:11,409] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:11,409] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:11,409] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:11,409] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:11,409] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:11,409] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:11,409] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:11,409] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:11,428] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 15:15:12,453] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M07_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:15:12,454] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M07_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:15:12,542] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:12,545] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:12,546] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:12,546] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:12,553] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:12,553] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:12,554] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:12,554] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:12,554] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:12,554] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:12,554] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:12,554] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:12,579] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:13,595] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:13,598] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:13,599] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:13,599] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:13,607] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:13,608] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:13,608] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:13,608] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:13,608] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:13,608] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:13,608] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:13,608] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:13,629] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 15:15:14,649] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M42_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:15:14,650] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M42_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:15:14,770] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:14,774] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:14,775] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:14,775] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:14,784] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:14,784] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:14,785] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:14,785] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:14,785] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:14,785] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:14,785] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:14,785] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:14,809] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:15,849] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:15,854] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:15,854] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:15,855] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:15,862] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:15,863] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:15,863] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:15,863] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:15,863] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:15,863] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:15,863] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:15,863] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:15,884] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 15:15:16,843] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M64_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:15:16,843] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M64_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:15:16,905] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:16,909] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:16,910] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:16,910] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:16,918] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:16,918] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:16,918] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:16,918] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:16,918] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:16,918] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:16,918] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:16,918] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:16,939] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:17,882] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:17,885] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:17,885] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:17,885] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:17,889] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:17,889] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:17,889] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:17,889] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:17,889] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:17,889] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:17,889] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:17,889] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:17,907] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 15:15:18,898] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M03_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:15:18,900] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M03_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:15:18,985] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:18,993] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:18,994] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:18,994] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:19,001] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:19,001] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:19,001] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:19,001] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:19,001] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:19,001] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:19,001] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:19,001] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:19,021] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:19,997] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:20,001] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:20,002] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:20,002] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:20,012] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:20,012] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:20,012] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:20,012] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:20,012] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:20,012] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:20,012] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:20,012] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:20,032] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 15:15:21,031] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M47_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:15:21,042] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M47_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:15:21,111] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:21,116] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:21,116] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:21,116] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:21,127] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:21,128] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:21,128] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:21,128] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:21,128] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:21,128] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:21,128] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:21,128] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:21,146] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:22,114] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:22,118] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:22,118] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:22,118] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:22,131] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:22,131] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:22,131] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:22,131] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:22,131] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:22,131] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:22,131] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:22,131] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:22,153] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 15:15:23,236] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M71_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:15:23,237] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M71_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:15:23,336] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:23,341] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:23,341] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:23,342] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:23,349] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:23,349] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:23,349] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:23,349] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:23,349] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:23,349] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:23,349] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:23,349] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:23,370] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:24,366] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:24,371] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:24,372] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:24,372] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:24,379] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:24,379] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:24,379] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:24,379] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:24,379] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:24,379] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:24,379] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:24,379] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:24,400] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 15:15:25,338] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M10_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:15:25,341] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M10_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:15:25,399] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:25,401] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:25,402] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:25,402] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:25,409] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:25,409] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:25,409] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:25,409] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:25,409] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:25,409] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:25,409] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:25,409] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:25,428] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:26,395] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:26,398] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:26,398] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:26,399] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:26,409] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:26,409] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:26,410] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:26,410] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:26,410] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:26,410] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:26,410] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:26,410] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:26,434] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 15:15:27,477] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M69_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:15:27,478] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M69_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:15:27,555] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:27,560] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:27,560] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:27,560] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:27,567] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:27,568] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:27,568] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:27,568] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:27,568] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:27,568] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:27,568] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:27,568] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:27,602] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:28,567] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:28,570] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:28,570] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:28,570] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:28,574] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:28,574] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:28,575] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:28,575] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:28,575] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:28,575] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:28,575] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:28,575] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:28,606] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 15:15:29,623] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M08_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:15:29,627] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M08_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:15:29,729] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:29,734] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:29,734] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:29,734] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:29,742] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:29,742] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:29,742] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:29,742] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:29,742] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:29,742] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:29,742] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:29,742] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:29,771] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:30,723] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:30,726] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:30,727] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:30,727] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:30,734] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:30,734] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:30,734] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:30,734] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:30,735] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:30,735] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:30,735] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:30,735] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:30,755] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 15:15:31,719] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M43_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:15:31,719] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M43_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:15:31,776] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:31,780] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:31,781] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:31,781] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:31,789] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:31,789] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:31,789] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:31,789] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:31,790] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:31,790] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:31,790] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:31,790] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:31,815] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:32,788] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:32,793] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:32,794] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:32,794] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:32,802] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:32,802] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:32,802] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:32,802] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:32,802] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:32,802] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:32,802] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:32,802] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:32,824] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 15:15:33,795] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M65_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:15:33,795] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M65_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:15:33,871] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:33,876] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:33,876] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:33,876] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:33,888] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:33,888] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:33,888] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:33,888] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:33,888] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:33,889] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:33,889] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:33,889] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:33,911] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:34,863] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:34,866] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:34,866] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:34,866] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:34,871] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:34,871] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:34,871] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:34,871] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:34,871] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:34,871] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:34,871] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:34,871] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:34,893] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 15:15:35,909] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M04_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:15:35,912] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M04_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:15:35,978] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:35,983] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:35,983] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:35,983] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:35,990] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:35,990] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:35,990] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:35,990] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:35,990] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:35,990] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:35,990] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:35,990] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:36,010] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:36,959] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:36,964] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:36,976] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:36,976] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:36,984] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:36,984] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:36,984] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:36,984] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:36,985] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:36,985] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:36,985] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:36,985] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:37,007] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 15:15:38,007] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M37_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:15:38,010] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M37_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:15:38,075] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:38,079] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:38,080] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:38,080] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:38,086] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:38,086] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:38,086] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:38,086] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:38,086] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:38,086] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:38,086] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:38,086] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:38,104] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:39,107] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:39,111] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:39,112] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:39,112] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:39,120] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:39,120] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:39,120] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:39,120] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:39,120] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:39,120] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:39,120] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:39,120] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:39,145] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 15:15:40,099] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M48_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:15:40,102] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M48_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:15:40,159] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:40,163] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:40,164] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:40,164] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:40,170] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:40,170] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:40,170] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:40,170] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:40,170] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:40,170] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:40,170] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:40,170] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:40,189] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:41,145] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:41,153] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:41,154] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:41,154] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:41,159] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:41,160] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:41,160] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:41,160] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:41,160] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:41,160] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:41,160] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:41,160] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:41,179] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 15:15:42,167] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M61_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:15:42,170] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M61_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:15:42,252] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:42,256] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:42,257] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:42,257] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:42,268] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:42,268] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:42,268] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:42,268] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:42,268] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:42,268] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:42,268] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:42,268] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:42,287] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:43,306] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:43,315] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:43,316] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:43,316] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:43,324] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:43,324] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:43,324] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:43,324] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:43,324] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:43,324] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:43,324] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:43,324] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:43,345] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 15:15:44,314] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M11_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:15:44,316] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M11_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:15:44,378] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:44,382] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:44,383] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:44,383] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:44,390] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:44,390] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:44,390] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:44,390] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:44,390] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:44,390] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:44,390] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:44,390] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:44,410] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:45,419] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:45,422] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:45,423] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:45,423] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:45,429] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:45,429] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:45,429] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:45,429] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:45,429] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:45,429] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:45,429] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:45,429] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:45,448] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 15:15:46,428] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M09_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:15:46,431] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M09_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:15:46,537] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:46,541] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:46,542] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:46,542] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:46,547] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:46,548] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:46,548] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:46,548] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:46,548] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:46,548] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:46,548] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:46,548] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:46,567] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:47,524] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:47,529] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:47,529] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:47,530] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:47,535] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:47,535] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:47,535] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:47,535] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:47,535] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:47,535] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:47,535] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:47,535] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:47,554] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 15:15:48,535] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M44_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:15:48,538] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M44_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:15:48,606] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:48,610] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:48,611] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:48,611] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:48,619] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:48,620] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:48,620] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:48,620] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:48,620] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:48,620] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:48,620] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:48,620] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:48,643] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:49,611] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:49,615] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:49,616] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:49,616] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:49,621] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:49,621] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:49,621] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:49,621] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:49,621] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:49,621] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:49,622] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:49,622] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:49,641] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 15:15:50,647] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M05_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:15:50,650] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M05_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:15:50,710] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:50,715] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:50,715] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:50,715] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:50,721] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:50,721] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:50,721] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:50,721] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:50,722] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:50,722] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:50,722] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:50,722] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:50,741] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:51,725] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:51,729] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:51,743] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:51,743] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:51,751] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:51,751] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:51,751] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:51,751] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:51,751] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:51,752] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:51,752] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:51,752] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:51,775] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 15:15:52,739] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M38_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:15:52,743] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M38_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:15:52,827] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:52,830] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:52,830] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:52,830] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:52,834] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:52,834] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:52,834] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:52,834] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:52,834] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:52,834] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:52,835] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:52,835] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:52,853] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:53,798] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:53,802] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:53,802] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:53,802] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:53,809] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:53,809] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:53,809] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:53,809] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:53,809] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:53,809] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:53,810] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:53,810] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:53,832] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 15:15:54,781] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M01_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:15:54,784] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M01_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:15:54,880] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:54,884] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:54,884] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:54,885] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:54,891] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:54,891] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:54,891] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:54,891] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:54,891] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:54,891] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:54,891] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:54,891] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:54,910] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:55,877] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:55,881] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:55,881] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:55,881] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:55,887] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:55,887] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:55,887] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:55,887] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:55,887] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:55,887] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:55,887] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:55,887] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:55,905] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 15:15:56,854] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M12_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:15:56,857] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M12_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:15:56,957] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:56,961] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:56,962] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:56,962] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:56,969] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:56,969] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:56,969] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:56,969] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:56,969] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:56,969] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:56,969] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:56,970] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:56,997] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:57,976] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:57,981] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:57,981] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:57,981] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:57,988] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:57,988] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:57,988] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:57,988] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:57,988] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:57,988] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:57,988] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:57,988] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:58,023] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 15:15:58,969] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M06_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:15:58,972] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M06_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:15:59,066] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:15:59,071] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:15:59,071] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:15:59,071] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:15:59,079] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:15:59,080] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:15:59,080] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:15:59,080] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:15:59,080] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:15:59,080] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:15:59,080] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:15:59,080] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:15:59,103] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:16:00,098] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:16:00,102] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:16:00,102] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:16:00,102] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:16:00,108] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:16:00,108] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:16:00,108] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:16:00,108] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:16:00,108] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:16:00,108] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:16:00,108] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:16:00,108] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:16:00,128] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 15:16:01,102] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M72_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:16:01,106] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M72_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:16:01,200] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:01,205] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:01,206] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:01,206] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:01,211] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:01,211] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:01,211] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:01,211] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:01,212] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:01,212] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:01,212] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:01,212] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:01,229] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:02,207] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:02,672] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:02,673] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:02,673] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:02,681] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:02,681] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:02,681] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:02,681] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:02,681] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:02,682] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:02,682] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:02,682] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:02,707] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 15:16:03,687] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M66_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:16:03,690] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M66_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:16:03,768] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:03,771] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:03,772] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:03,772] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:03,776] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:03,776] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:03,776] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:03,777] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:03,777] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:03,777] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:03,777] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:03,777] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:03,795] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:04,748] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:04,751] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:04,752] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:04,752] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:04,760] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:04,760] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:04,760] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:04,760] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:04,761] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:04,761] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:04,761] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:04,761] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:04,784] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 15:16:05,756] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M40_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:16:05,759] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M40_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:16:05,836] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:05,841] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:05,841] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:05,841] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:05,848] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:05,848] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:05,848] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:05,848] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:05,848] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:05,848] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:05,848] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:05,848] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:05,869] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:06,864] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:06,868] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:06,868] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:06,868] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:06,875] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:06,875] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:06,876] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:06,876] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:06,876] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:06,876] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:06,876] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:06,876] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:06,901] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 15:16:07,855] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M62_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:16:07,858] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M62_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:16:07,918] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:07,923] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:07,923] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:07,923] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:07,930] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:07,930] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:07,930] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:07,930] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:07,930] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:07,930] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:07,930] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:07,930] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:07,950] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:08,886] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:08,890] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:08,891] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:08,891] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:08,899] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:08,899] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:08,899] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:08,899] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:08,899] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:08,899] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:08,899] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:08,900] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:08,921] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 15:16:09,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M45_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:16:09,902] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M45_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:16:10,002] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:10,006] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:10,007] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:10,007] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:10,013] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:10,013] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:10,013] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:10,013] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:10,013] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:10,013] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:10,013] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:10,013] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:10,033] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:10,996] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:11,001] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:11,001] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:11,002] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:11,009] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:11,009] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:11,009] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:11,009] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:11,009] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:11,009] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:11,010] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:11,010] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:11,031] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 15:16:11,984] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M67_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:16:11,987] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M67_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:16:12,092] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:12,096] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:12,097] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:12,097] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:12,105] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:12,105] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:12,105] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:12,105] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:12,105] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:12,105] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:12,106] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:12,106] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:12,129] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:13,088] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:13,090] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:13,091] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:13,091] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:13,095] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:13,095] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:13,095] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:13,095] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:13,095] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:13,095] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:13,095] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:13,095] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:13,113] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 15:16:14,064] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M41_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:16:14,067] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M41_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:16:14,157] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:14,162] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:14,163] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:14,163] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:14,168] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:14,168] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:14,168] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:14,168] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:14,168] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:14,168] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:14,169] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:14,169] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:14,187] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:15,142] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:15,146] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:15,146] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:15,146] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:15,152] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:15,153] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:15,153] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:15,153] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:15,153] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:15,153] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:15,153] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:15,153] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:15,173] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 15:16:16,140] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M39_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:16:16,143] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M39_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:16:16,237] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:16,241] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:16,242] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:16,242] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:16,250] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:16,250] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:16,251] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:16,251] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:16,251] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:16,251] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:16,251] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:16,251] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:16,273] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:17,252] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:17,256] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:17,257] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:17,257] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:17,262] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:17,262] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:17,262] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:17,262] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:17,262] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:17,262] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:17,262] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:17,262] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:17,281] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 15:16:18,268] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M63_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:16:18,272] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M63_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:16:18,331] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:18,335] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:18,336] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:18,336] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:18,343] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:18,343] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:18,343] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:18,344] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:18,344] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:18,344] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:18,344] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:18,344] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:18,365] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:19,339] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:19,342] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:19,343] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:19,343] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:19,349] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:19,349] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:19,349] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:19,349] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:19,349] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:19,349] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:19,349] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:19,349] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:19,368] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 15:16:20,379] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M02_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:16:20,383] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M02_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:16:20,477] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:20,481] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:20,482] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:20,482] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:20,489] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:20,489] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:20,489] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:20,489] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:20,489] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:20,489] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:20,489] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:20,489] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:20,507] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:21,451] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:21,455] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:21,455] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:21,455] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:21,462] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:21,462] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:21,462] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:21,462] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:21,462] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:21,463] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:21,463] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:21,463] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:21,483] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 15:16:22,489] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M46_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:16:22,492] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M46_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:16:22,578] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:22,583] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:22,583] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:22,584] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:22,592] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:22,592] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:22,592] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:22,592] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:22,592] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:22,592] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:22,592] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:22,592] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:22,616] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:23,596] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:23,601] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:23,610] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:23,610] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:23,617] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:23,617] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:23,618] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:23,618] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:23,618] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:23,618] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:23,618] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:23,618] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:23,641] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 15:16:24,647] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M70_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 15:16:24,650] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M70_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 15:16:24,736] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:24,741] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:24,741] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:24,741] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:24,749] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:24,749] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:24,749] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:24,749] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:24,749] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:24,749] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:24,749] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:24,749] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:24,769] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:25,773] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:25,777] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:25,778] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:25,778] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:25,786] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:25,786] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:25,786] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:25,786] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:25,786] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:25,786] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:25,786] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:25,787] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:25,806] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 15:16:26,800] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-24 15:16:26,804] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-24 15:16:26,812] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-24 15:16:26,834] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-24 15:16:26,838] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-24 15:16:26,844] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-24 15:16:26,859] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-08-24 15:16:26,863] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-08-24 15:16:26,893] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2026-08-24 15:16:26,897] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2026-08-24 15:16:26,903] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2026-08-24 15:16:26,923] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2026-08-24 15:16:26,927] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2026-08-24 15:16:26,998] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-24 15:16:27,003] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-24 15:16:27,003] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-24 15:16:27,003] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-24 15:16:27,011] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-24 15:16:27,035] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2026-08-24 15:16:27,038] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2026-08-24 15:16:27,044] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2026-08-24 15:16:27,067] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-24 15:16:27,072] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-24 15:16:27,079] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-24 15:16:27,103] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-08-24 15:16:27,109] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-08-24 15:16:27,187] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: genes_refFlat [2026-08-24 15:16:27,191] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: genes_refFlat [2026-08-24 15:16:27,192] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: genes_refFlat [2026-08-24 15:16:27,192] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: genes_refFlat [2026-08-24 15:16:27,200] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: genes_refFlat [2026-08-24 15:16:27,200] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: genes_refFlat [2026-08-24 15:16:27,200] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: genes_refFlat [2026-08-24 15:16:27,200] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: genes_refFlat [2026-08-24 15:16:27,200] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: genes_refFlat [2026-08-24 15:16:27,200] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: genes_refFlat [2026-08-24 15:16:27,200] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: genes_refFlat [2026-08-24 15:16:27,200] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: genes_refFlat [2026-08-24 15:16:27,200] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: genes_refFlat [2026-08-24 15:16:27,200] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: genes_refFlat [2026-08-24 15:16:28,106] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-24 15:16:28,109] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-24 15:16:28,109] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-24 15:16:28,110] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-24 15:16:28,116] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.TOPHAT [2026-08-24 15:16:28,168] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-24 15:16:28,171] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-24 15:16:28,172] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-24 15:16:28,172] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-24 15:16:28,177] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-24 15:16:31,319] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2026-08-24 15:16:31,339] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2026-08-24 15:16:31,343] multiqc [DEBUG ] No samples found: custom_content [2026-08-24 15:16:31,365] multiqc [DEBUG ] No samples found: ccs [2026-08-24 15:16:31,390] multiqc [DEBUG ] No samples found: ngsderive [2026-08-24 15:16:31,416] multiqc [DEBUG ] No samples found: purple [2026-08-24 15:16:31,426] multiqc [DEBUG ] No samples found: conpair [2026-08-24 15:16:31,440] multiqc [DEBUG ] No samples found: lima [2026-08-24 15:16:31,463] multiqc [DEBUG ] No samples found: peddy [2026-08-24 15:16:31,481] multiqc [DEBUG ] No samples found: somalier [2026-08-24 15:16:31,500] multiqc [DEBUG ] No samples found: methylQA [2026-08-24 15:16:31,539] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2026-08-24 15:16:31,539] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2026-08-24 15:16:31,540] multiqc [DEBUG ] No samples found: mosdepth [2026-08-24 15:16:31,549] multiqc [DEBUG ] No samples found: phantompeakqualtools [2026-08-24 15:16:31,571] multiqc [DEBUG ] No samples found: qualimap [2026-08-24 15:16:31,597] multiqc [DEBUG ] No samples found: preseq [2026-08-24 15:16:31,621] multiqc [DEBUG ] No samples found: quast [2026-08-24 15:16:31,647] multiqc [DEBUG ] No samples found: qorts [2026-08-24 15:16:31,676] multiqc [DEBUG ] No samples found: rna_seqc [2026-08-24 15:16:31,696] multiqc [DEBUG ] No samples found: rockhopper [2026-08-24 15:16:31,734] multiqc [DEBUG ] No samples found: rsem [2026-08-24 15:16:31,849] multiqc.modules.rseqc.rseqc [INFO ] Found 36 infer_experiment reports [2026-08-24 15:16:31,872] multiqc [DEBUG ] No samples found: busco [2026-08-24 15:16:31,894] multiqc [DEBUG ] No samples found: bustools [2026-08-24 15:16:31,914] multiqc [DEBUG ] No samples found: goleft_indexcov [2026-08-24 15:16:31,942] multiqc [DEBUG ] No samples found: gffcompare [2026-08-24 15:16:31,954] multiqc [DEBUG ] No samples found: disambiguate [2026-08-24 15:16:31,980] multiqc [DEBUG ] No samples found: supernova [2026-08-24 15:16:32,044] multiqc [DEBUG ] No samples found: deeptools [2026-08-24 15:16:32,070] multiqc [DEBUG ] No samples found: sargasso [2026-08-24 15:16:32,079] multiqc [DEBUG ] No samples found: verifybamid [2026-08-24 15:16:32,101] multiqc [DEBUG ] No samples found: mirtrace [2026-08-24 15:16:32,120] multiqc [DEBUG ] No samples found: happy [2026-08-24 15:16:32,147] multiqc [DEBUG ] No samples found: mirtop [2026-08-24 15:16:32,167] multiqc [DEBUG ] No samples found: sambamba [2026-08-24 15:16:32,206] multiqc [DEBUG ] No samples found: homer [2026-08-24 15:16:32,231] multiqc [DEBUG ] No samples found: hops [2026-08-24 15:16:32,255] multiqc [DEBUG ] No samples found: macs2 [2026-08-24 15:16:32,265] multiqc [DEBUG ] No samples found: theta2 [2026-08-24 15:16:32,287] multiqc [DEBUG ] No samples found: snpeff [2026-08-24 15:16:32,325] multiqc [DEBUG ] No samples found: gatk [2026-08-24 15:16:32,336] multiqc [DEBUG ] No samples found: htseq [2026-08-24 15:16:32,357] multiqc [DEBUG ] No samples found: bcftools [2026-08-24 15:16:32,393] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M68_sorted [2026-08-24 15:16:32,398] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M07_sorted [2026-08-24 15:16:32,401] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M42_sorted [2026-08-24 15:16:32,404] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M64_sorted [2026-08-24 15:16:32,408] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M03_sorted [2026-08-24 15:16:32,412] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M47_sorted [2026-08-24 15:16:32,418] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M71_sorted [2026-08-24 15:16:32,424] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M10_sorted [2026-08-24 15:16:32,428] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M69_sorted [2026-08-24 15:16:32,432] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M08_sorted [2026-08-24 15:16:32,436] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M43_sorted [2026-08-24 15:16:32,440] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M65_sorted [2026-08-24 15:16:32,445] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M04_sorted [2026-08-24 15:16:32,448] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M37_sorted [2026-08-24 15:16:32,452] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M48_sorted [2026-08-24 15:16:32,455] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M61_sorted [2026-08-24 15:16:32,458] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M11_sorted [2026-08-24 15:16:32,461] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M09_sorted [2026-08-24 15:16:32,464] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M44_sorted [2026-08-24 15:16:32,467] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M05_sorted [2026-08-24 15:16:32,471] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M38_sorted [2026-08-24 15:16:32,474] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M01_sorted [2026-08-24 15:16:32,477] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M12_sorted [2026-08-24 15:16:32,479] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M06_sorted [2026-08-24 15:16:32,481] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M72_sorted [2026-08-24 15:16:32,483] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M66_sorted [2026-08-24 15:16:32,486] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M40_sorted [2026-08-24 15:16:32,488] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M62_sorted [2026-08-24 15:16:32,490] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M45_sorted [2026-08-24 15:16:32,492] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M67_sorted [2026-08-24 15:16:32,493] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M41_sorted [2026-08-24 15:16:32,495] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M39_sorted [2026-08-24 15:16:32,497] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M63_sorted [2026-08-24 15:16:32,498] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M02_sorted [2026-08-24 15:16:32,500] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M46_sorted [2026-08-24 15:16:32,501] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M70_sorted [2026-08-24 15:16:32,502] multiqc.modules.featureCounts.feature_counts [INFO ] Found 36 reports [2026-08-24 15:16:32,563] multiqc [DEBUG ] No samples found: fgbio [2026-08-24 15:16:32,648] multiqc [DEBUG ] No samples found: dragen [2026-08-24 15:16:32,674] multiqc [DEBUG ] No samples found: dedup [2026-08-24 15:16:32,708] multiqc [DEBUG ] No samples found: damageprofiler [2026-08-24 15:16:32,894] multiqc [DEBUG ] No samples found: biobambam2 [2026-08-24 15:16:32,918] multiqc [DEBUG ] No samples found: jcvi [2026-08-24 15:16:32,930] multiqc [DEBUG ] No samples found: mtnucratio [2026-08-24 15:16:32,935] multiqc [DEBUG ] No samples found: picard [2026-08-24 15:16:32,954] multiqc [DEBUG ] No samples found: vep [2026-08-24 15:16:32,983] multiqc [DEBUG ] No samples found: sentieon [2026-08-24 15:16:33,002] multiqc [DEBUG ] No samples found: prokka [2026-08-24 15:16:33,021] multiqc [DEBUG ] No samples found: qc3C [2026-08-24 15:16:33,039] multiqc [DEBUG ] No samples found: nanostat [2026-08-24 15:16:33,047] multiqc [DEBUG ] No samples found: samblaster [2026-08-24 15:16:33,112] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,114] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,117] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,119] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,121] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,123] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,126] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,129] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,131] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,134] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,136] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,139] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,141] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,143] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,145] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,147] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,148] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,150] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,152] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,154] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,155] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,156] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,158] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,159] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,160] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,161] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,162] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,163] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,164] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,164] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,165] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,166] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,166] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,167] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,167] multiqc.modules.samtools.flagstat [DEBUG ] Duplicate sample name found! Overwriting: statistics_for_primary_unique_reads [2026-08-24 15:16:33,169] multiqc.modules.samtools.samtools [INFO ] Found 1 flagstat reports [2026-08-24 15:16:33,193] multiqc [DEBUG ] No samples found: sexdeterrmine [2026-08-24 15:16:33,200] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2026-08-24 15:16:33,209] multiqc [DEBUG ] No samples found: bamtools [2026-08-24 15:16:33,219] multiqc [DEBUG ] No samples found: jellyfish [2026-08-24 15:16:33,231] multiqc [DEBUG ] No samples found: vcftools [2026-08-24 15:16:33,254] multiqc [DEBUG ] No samples found: longranger [2026-08-24 15:16:33,281] multiqc [DEBUG ] No samples found: stacks [2026-08-24 15:16:33,298] multiqc [DEBUG ] No samples found: varscan2 [2026-08-24 15:16:33,322] multiqc [DEBUG ] No samples found: snippy [2026-08-24 15:16:33,390] multiqc [DEBUG ] No samples found: bbmap [2026-08-24 15:16:33,413] multiqc [DEBUG ] No samples found: bismark [2026-08-24 15:16:33,438] multiqc [DEBUG ] No samples found: biscuit [2026-08-24 15:16:33,465] multiqc [DEBUG ] No samples found: hicexplorer [2026-08-24 15:16:33,482] multiqc [DEBUG ] No samples found: hicup [2026-08-24 15:16:33,508] multiqc [DEBUG ] No samples found: hicpro [2026-08-24 15:16:33,520] multiqc [DEBUG ] No samples found: salmon [2026-08-24 15:16:33,548] multiqc [DEBUG ] No samples found: kallisto [2026-08-24 15:16:33,568] multiqc [DEBUG ] No samples found: slamdunk [2026-08-24 15:16:33,587] multiqc [DEBUG ] No samples found: star [2026-08-24 15:16:33,612] multiqc [DEBUG ] No samples found: hisat2 [2026-08-24 15:16:33,635] multiqc [DEBUG ] No samples found: tophat [2026-08-24 15:16:33,652] multiqc [DEBUG ] No samples found: bowtie2 [2026-08-24 15:16:33,665] multiqc [DEBUG ] No samples found: bowtie1 [2026-08-24 15:16:33,688] multiqc [DEBUG ] No samples found: snpsplit [2026-08-24 15:16:33,705] multiqc [DEBUG ] No samples found: odgi [2026-08-24 15:16:33,722] multiqc [DEBUG ] No samples found: pangolin [2026-08-24 15:16:33,730] multiqc [DEBUG ] No samples found: kat [2026-08-24 15:16:33,736] multiqc [DEBUG ] No samples found: leehom [2026-08-24 15:16:33,758] multiqc [DEBUG ] No samples found: adapterRemoval [2026-08-24 15:16:33,768] multiqc [DEBUG ] No samples found: clipandmerge [2026-08-24 15:16:33,791] multiqc [DEBUG ] No samples found: cutadapt [2026-08-24 15:16:33,802] multiqc [DEBUG ] No samples found: flexbar [2026-08-24 15:16:33,826] multiqc [DEBUG ] No samples found: kaiju [2026-08-24 15:16:33,845] multiqc [DEBUG ] No samples found: kraken [2026-08-24 15:16:33,862] multiqc [DEBUG ] No samples found: malt [2026-08-24 15:16:33,878] multiqc [DEBUG ] No samples found: trimmomatic [2026-08-24 15:16:33,893] multiqc [DEBUG ] No samples found: sickle [2026-08-24 15:16:33,908] multiqc [DEBUG ] No samples found: skewer [2026-08-24 15:16:33,915] multiqc [DEBUG ] No samples found: sortmerna [2026-08-24 15:16:33,924] multiqc [DEBUG ] No samples found: biobloomtools [2026-08-24 15:16:33,948] multiqc [DEBUG ] No samples found: fastq_screen [2026-08-24 15:16:33,967] multiqc [DEBUG ] No samples found: afterqc [2026-08-24 15:16:33,986] multiqc [DEBUG ] No samples found: fastp [2026-08-24 15:16:34,014] multiqc [DEBUG ] No samples found: fastqc [2026-08-24 15:16:34,024] multiqc [DEBUG ] No samples found: pychopper [2026-08-24 15:16:34,044] multiqc [DEBUG ] No samples found: pycoqc [2026-08-24 15:16:34,059] multiqc [DEBUG ] No samples found: minionqc [2026-08-24 15:16:34,076] multiqc [DEBUG ] No samples found: multivcfanalyzer [2026-08-24 15:16:34,097] multiqc [DEBUG ] No samples found: clusterflow [2026-08-24 15:16:34,116] multiqc [DEBUG ] No samples found: bcl2fastq [2026-08-24 15:16:34,141] multiqc [DEBUG ] No samples found: bclconvert [2026-08-24 15:16:34,164] multiqc [DEBUG ] No samples found: interop [2026-08-24 15:16:34,182] multiqc [DEBUG ] No samples found: ivar [2026-08-24 15:16:34,204] multiqc [DEBUG ] No samples found: flash [2026-08-24 15:16:34,226] multiqc [DEBUG ] No samples found: seqyclean [2026-08-24 15:16:34,235] multiqc [DEBUG ] No samples found: optitype [2026-08-24 15:16:34,253] multiqc [INFO ] Compressing plot data [2026-08-24 15:16:34,265] multiqc [INFO ] Report : multiqc_report.html [2026-08-24 15:16:34,265] multiqc [INFO ] Data : multiqc_data [2026-08-24 15:16:34,265] multiqc [DEBUG ] Moving data file from '/scratch/tmp9pph4ygs/multiqc_data' to '/projectnb/wax-dk/max/G216_MM9/Scripts/99_final_summary/G216_MM9_multiqc_report/multiqc_data' [2026-08-24 15:16:34,831] multiqc [INFO ] MultiQC complete