[2026-08-24 21:57:51,219] multiqc [DEBUG ] This is MultiQC v1.11 [2026-08-24 21:57:51,220] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2026-08-24 21:57:51,220] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2026-08-24 21:57:51,220] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2026-08-24 21:57:51,222] multiqc [DEBUG ] Loading config settings from: /projectnb/wax-dk/max/G216_MM10/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2026-08-24 21:57:51,222] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2026-08-24 21:57:51,223] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2026-08-24 21:57:51,223] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G216_MM10/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G216_MM10/SAMPLES /projectnb/wax-dk/max/G216_MM10/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G216_MM10/Scripts/06_CollectMetrics/ [2026-08-24 21:57:51,794] multiqc [WARNING] MultiQC Version v1.35 now available! [2026-08-24 21:57:51,794] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G216_MM10/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G216_MM10/SAMPLES /projectnb/wax-dk/max/G216_MM10/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G216_MM10/Scripts/06_CollectMetrics/ [2026-08-24 21:57:51,794] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G216_MM10/Scripts/99_final_summary/G216_MM10_multiqc_report [2026-08-24 21:57:51,794] multiqc [DEBUG ] Template : default [2026-08-24 21:57:51,795] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2026-08-24 21:57:51,796] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2026-08-24 21:57:51,803] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpicjkn61l [2026-08-24 21:57:52,120] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G216_MM10/SAMPLES [2026-08-24 21:57:52,121] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G216_MM10/Scripts/03_FASTQC [2026-08-24 21:57:52,121] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G216_MM10/Scripts/06_CollectMetrics [2026-08-24 21:57:53,483] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M68_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:57:53,484] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M68_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:57:53,786] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M68_SJ.out.tab [2026-08-24 21:57:53,789] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M68_SJ.out.tab [2026-08-24 21:57:53,790] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M68_SJ.out.tab [2026-08-24 21:57:53,790] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M68_SJ.out.tab [2026-08-24 21:57:53,794] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M68_SJ.out.tab [2026-08-24 21:57:53,794] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M68_SJ.out.tab [2026-08-24 21:57:53,794] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M68_SJ.out.tab [2026-08-24 21:57:53,794] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M68_SJ.out.tab [2026-08-24 21:57:53,794] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M68_SJ.out.tab [2026-08-24 21:57:53,794] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M68_SJ.out.tab [2026-08-24 21:57:53,794] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M68_SJ.out.tab [2026-08-24 21:57:53,794] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M68_SJ.out.tab [2026-08-24 21:57:53,794] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M68_SJ.out.tab [2026-08-24 21:57:53,794] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M68_SJ.out.tab [2026-08-24 21:57:55,894] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 21:57:55,905] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 21:57:55,907] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 21:57:55,907] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 21:57:55,915] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 21:57:55,915] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 21:57:55,915] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 21:57:55,915] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 21:57:55,915] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 21:57:55,915] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 21:57:55,915] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 21:57:57,047] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 21:57:57,057] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 21:57:57,062] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 21:57:57,062] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 21:57:57,067] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 21:57:57,068] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 21:57:57,068] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 21:57:57,068] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 21:57:57,068] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 21:57:57,068] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 21:57:57,068] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M68_featureCounts.out [2026-08-24 21:57:58,184] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M07_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:57:58,187] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M07_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:57:58,440] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M07_SJ.out.tab [2026-08-24 21:57:58,448] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M07_SJ.out.tab [2026-08-24 21:57:58,449] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M07_SJ.out.tab [2026-08-24 21:57:58,449] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M07_SJ.out.tab [2026-08-24 21:57:58,460] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M07_SJ.out.tab [2026-08-24 21:57:58,460] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M07_SJ.out.tab [2026-08-24 21:57:58,460] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M07_SJ.out.tab [2026-08-24 21:57:58,460] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M07_SJ.out.tab [2026-08-24 21:57:58,460] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M07_SJ.out.tab [2026-08-24 21:57:58,460] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M07_SJ.out.tab [2026-08-24 21:57:58,460] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M07_SJ.out.tab [2026-08-24 21:57:58,460] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M07_SJ.out.tab [2026-08-24 21:57:58,460] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M07_SJ.out.tab [2026-08-24 21:57:58,460] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M07_SJ.out.tab [2026-08-24 21:58:00,571] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M07_marked_dup_metrics.txt [2026-08-24 21:58:00,574] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M07_marked_dup_metrics.txt [2026-08-24 21:58:00,575] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M07_marked_dup_metrics.txt [2026-08-24 21:58:00,575] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M07_marked_dup_metrics.txt [2026-08-24 21:58:00,579] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M07_marked_dup_metrics.txt [2026-08-24 21:58:00,601] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216_M07_hist.pdf [2026-08-24 21:58:00,630] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M07_metrics [2026-08-24 21:58:00,636] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M07_metrics [2026-08-24 21:58:00,638] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M07_metrics [2026-08-24 21:58:00,638] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M07_metrics [2026-08-24 21:58:00,653] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M07_metrics [2026-08-24 21:58:00,804] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 21:58:00,813] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 21:58:00,813] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 21:58:00,813] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 21:58:00,823] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 21:58:00,823] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 21:58:00,823] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 21:58:00,823] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 21:58:00,823] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 21:58:00,823] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 21:58:00,823] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 21:58:01,782] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 21:58:01,785] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 21:58:01,786] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 21:58:01,786] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 21:58:01,792] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 21:58:01,792] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 21:58:01,792] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 21:58:01,792] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 21:58:01,792] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 21:58:01,792] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 21:58:01,793] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M07_featureCounts.out [2026-08-24 21:58:02,693] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M07_metrics [2026-08-24 21:58:02,702] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M07_metrics [2026-08-24 21:58:02,722] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M07_metrics [2026-08-24 21:58:02,793] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M42_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:58:02,796] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M42_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:58:02,921] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M42_SJ.out.tab [2026-08-24 21:58:02,927] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M42_SJ.out.tab [2026-08-24 21:58:02,928] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M42_SJ.out.tab [2026-08-24 21:58:02,928] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M42_SJ.out.tab [2026-08-24 21:58:02,941] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M42_SJ.out.tab [2026-08-24 21:58:02,941] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M42_SJ.out.tab [2026-08-24 21:58:02,941] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M42_SJ.out.tab [2026-08-24 21:58:02,941] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M42_SJ.out.tab [2026-08-24 21:58:02,941] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M42_SJ.out.tab [2026-08-24 21:58:02,941] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M42_SJ.out.tab [2026-08-24 21:58:02,941] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M42_SJ.out.tab [2026-08-24 21:58:02,941] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M42_SJ.out.tab [2026-08-24 21:58:02,973] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M42_SJ.out.tab [2026-08-24 21:58:04,773] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 21:58:04,776] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 21:58:04,777] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 21:58:04,777] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 21:58:04,782] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 21:58:04,782] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 21:58:04,782] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 21:58:04,782] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 21:58:04,782] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 21:58:04,782] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 21:58:04,782] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 21:58:05,789] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 21:58:05,792] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 21:58:05,792] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 21:58:05,792] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 21:58:05,796] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 21:58:05,796] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 21:58:05,796] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 21:58:05,796] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 21:58:05,796] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 21:58:05,796] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 21:58:05,797] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M42_featureCounts.out [2026-08-24 21:58:06,788] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M64_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:58:06,791] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M64_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:58:07,029] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M64_SJ.out.tab [2026-08-24 21:58:07,037] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M64_SJ.out.tab [2026-08-24 21:58:07,038] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M64_SJ.out.tab [2026-08-24 21:58:07,038] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M64_SJ.out.tab [2026-08-24 21:58:07,049] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M64_SJ.out.tab [2026-08-24 21:58:07,049] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M64_SJ.out.tab [2026-08-24 21:58:07,049] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M64_SJ.out.tab [2026-08-24 21:58:07,049] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M64_SJ.out.tab [2026-08-24 21:58:07,049] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M64_SJ.out.tab [2026-08-24 21:58:07,049] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M64_SJ.out.tab [2026-08-24 21:58:07,049] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M64_SJ.out.tab [2026-08-24 21:58:07,049] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M64_SJ.out.tab [2026-08-24 21:58:07,082] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M64_SJ.out.tab [2026-08-24 21:58:08,744] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 21:58:08,747] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 21:58:08,747] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 21:58:08,747] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 21:58:08,751] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 21:58:08,751] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 21:58:08,751] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 21:58:08,751] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 21:58:08,751] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 21:58:08,751] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 21:58:08,751] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 21:58:09,710] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 21:58:09,719] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 21:58:09,721] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 21:58:09,721] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 21:58:09,732] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 21:58:09,732] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 21:58:09,732] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 21:58:09,732] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 21:58:09,732] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 21:58:09,732] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 21:58:09,732] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M64_featureCounts.out [2026-08-24 21:58:10,756] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M03_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:58:10,758] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M03_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:58:10,820] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M03_SJ.out.tab [2026-08-24 21:58:10,827] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M03_SJ.out.tab [2026-08-24 21:58:10,828] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M03_SJ.out.tab [2026-08-24 21:58:10,828] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M03_SJ.out.tab [2026-08-24 21:58:10,841] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M03_SJ.out.tab [2026-08-24 21:58:10,841] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M03_SJ.out.tab [2026-08-24 21:58:10,841] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M03_SJ.out.tab [2026-08-24 21:58:10,841] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M03_SJ.out.tab [2026-08-24 21:58:10,841] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M03_SJ.out.tab [2026-08-24 21:58:10,841] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M03_SJ.out.tab [2026-08-24 21:58:10,841] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M03_SJ.out.tab [2026-08-24 21:58:10,841] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M03_SJ.out.tab [2026-08-24 21:58:10,841] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M03_SJ.out.tab [2026-08-24 21:58:10,841] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M03_SJ.out.tab [2026-08-24 21:58:13,092] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M03_marked_dup_metrics.txt [2026-08-24 21:58:13,096] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M03_marked_dup_metrics.txt [2026-08-24 21:58:13,096] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M03_marked_dup_metrics.txt [2026-08-24 21:58:13,096] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M03_marked_dup_metrics.txt [2026-08-24 21:58:13,118] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M03_marked_dup_metrics.txt [2026-08-24 21:58:13,141] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216_M03_hist.pdf [2026-08-24 21:58:13,162] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M03_metrics [2026-08-24 21:58:13,164] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M03_metrics [2026-08-24 21:58:13,165] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M03_metrics [2026-08-24 21:58:13,165] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M03_metrics [2026-08-24 21:58:13,169] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M03_metrics [2026-08-24 21:58:13,313] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 21:58:13,320] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 21:58:13,321] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 21:58:13,321] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 21:58:13,333] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 21:58:13,333] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 21:58:13,333] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 21:58:13,333] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 21:58:13,333] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 21:58:13,333] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 21:58:13,333] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 21:58:14,314] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 21:58:14,320] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 21:58:14,320] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 21:58:14,320] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 21:58:14,328] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 21:58:14,328] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 21:58:14,328] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 21:58:14,328] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 21:58:14,328] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 21:58:14,328] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 21:58:14,329] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M03_featureCounts.out [2026-08-24 21:58:15,239] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M03_metrics [2026-08-24 21:58:15,243] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M03_metrics [2026-08-24 21:58:15,247] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M03_metrics [2026-08-24 21:58:15,296] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M47_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:58:15,298] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M47_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:58:15,382] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M47_SJ.out.tab [2026-08-24 21:58:15,385] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M47_SJ.out.tab [2026-08-24 21:58:15,386] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M47_SJ.out.tab [2026-08-24 21:58:15,386] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M47_SJ.out.tab [2026-08-24 21:58:15,393] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M47_SJ.out.tab [2026-08-24 21:58:15,393] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M47_SJ.out.tab [2026-08-24 21:58:15,393] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M47_SJ.out.tab [2026-08-24 21:58:15,393] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M47_SJ.out.tab [2026-08-24 21:58:15,393] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M47_SJ.out.tab [2026-08-24 21:58:15,393] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M47_SJ.out.tab [2026-08-24 21:58:15,393] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M47_SJ.out.tab [2026-08-24 21:58:15,393] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M47_SJ.out.tab [2026-08-24 21:58:15,426] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M47_SJ.out.tab [2026-08-24 21:58:17,088] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 21:58:17,091] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 21:58:17,092] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 21:58:17,092] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 21:58:17,099] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 21:58:17,099] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 21:58:17,099] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 21:58:17,099] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 21:58:17,099] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 21:58:17,099] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 21:58:17,099] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 21:58:18,066] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 21:58:18,068] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 21:58:18,069] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 21:58:18,069] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 21:58:18,074] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 21:58:18,074] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 21:58:18,074] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 21:58:18,074] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 21:58:18,074] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 21:58:18,074] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 21:58:18,074] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M47_featureCounts.out [2026-08-24 21:58:19,085] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M71_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:58:19,087] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M71_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:58:19,386] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M71_SJ.out.tab [2026-08-24 21:58:19,390] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M71_SJ.out.tab [2026-08-24 21:58:19,405] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M71_SJ.out.tab [2026-08-24 21:58:19,406] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M71_SJ.out.tab [2026-08-24 21:58:19,423] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M71_SJ.out.tab [2026-08-24 21:58:19,423] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M71_SJ.out.tab [2026-08-24 21:58:19,423] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M71_SJ.out.tab [2026-08-24 21:58:19,423] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M71_SJ.out.tab [2026-08-24 21:58:19,423] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M71_SJ.out.tab [2026-08-24 21:58:19,423] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M71_SJ.out.tab [2026-08-24 21:58:19,423] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M71_SJ.out.tab [2026-08-24 21:58:19,423] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M71_SJ.out.tab [2026-08-24 21:58:19,423] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M71_SJ.out.tab [2026-08-24 21:58:19,423] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M71_SJ.out.tab [2026-08-24 21:58:21,518] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 21:58:21,526] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 21:58:21,527] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 21:58:21,527] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 21:58:21,543] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 21:58:21,543] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 21:58:21,543] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 21:58:21,543] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 21:58:21,543] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 21:58:21,543] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 21:58:21,543] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 21:58:22,577] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 21:58:22,580] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 21:58:22,580] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 21:58:22,580] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 21:58:22,586] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 21:58:22,586] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 21:58:22,586] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 21:58:22,586] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 21:58:22,586] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 21:58:22,586] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 21:58:22,586] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M71_featureCounts.out [2026-08-24 21:58:23,586] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M10_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:58:23,588] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M10_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:58:23,790] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M10_SJ.out.tab [2026-08-24 21:58:23,794] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M10_SJ.out.tab [2026-08-24 21:58:23,794] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M10_SJ.out.tab [2026-08-24 21:58:23,794] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M10_SJ.out.tab [2026-08-24 21:58:23,812] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M10_SJ.out.tab [2026-08-24 21:58:23,812] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M10_SJ.out.tab [2026-08-24 21:58:23,812] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M10_SJ.out.tab [2026-08-24 21:58:23,812] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M10_SJ.out.tab [2026-08-24 21:58:23,812] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M10_SJ.out.tab [2026-08-24 21:58:23,812] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M10_SJ.out.tab [2026-08-24 21:58:23,812] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M10_SJ.out.tab [2026-08-24 21:58:23,812] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M10_SJ.out.tab [2026-08-24 21:58:23,812] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M10_SJ.out.tab [2026-08-24 21:58:23,812] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M10_SJ.out.tab [2026-08-24 21:58:25,723] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M10_marked_dup_metrics.txt [2026-08-24 21:58:25,733] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M10_marked_dup_metrics.txt [2026-08-24 21:58:25,734] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M10_marked_dup_metrics.txt [2026-08-24 21:58:25,734] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M10_marked_dup_metrics.txt [2026-08-24 21:58:25,754] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M10_marked_dup_metrics.txt [2026-08-24 21:58:25,813] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M10_metrics [2026-08-24 21:58:25,822] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M10_metrics [2026-08-24 21:58:25,824] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M10_metrics [2026-08-24 21:58:25,824] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M10_metrics [2026-08-24 21:58:25,840] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M10_metrics [2026-08-24 21:58:25,919] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216_M10_hist.pdf [2026-08-24 21:58:25,953] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 21:58:25,962] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 21:58:25,962] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 21:58:25,962] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 21:58:25,967] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 21:58:25,967] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 21:58:25,967] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 21:58:25,967] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 21:58:25,967] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 21:58:25,967] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 21:58:25,967] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 21:58:26,962] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 21:58:26,971] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 21:58:26,971] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 21:58:26,971] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 21:58:26,977] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 21:58:26,977] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 21:58:26,977] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 21:58:26,977] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 21:58:26,977] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 21:58:26,977] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 21:58:26,977] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M10_featureCounts.out [2026-08-24 21:58:27,922] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M10_metrics [2026-08-24 21:58:27,934] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M10_metrics [2026-08-24 21:58:27,955] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M10_metrics [2026-08-24 21:58:28,072] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M69_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:58:28,074] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M69_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:58:28,137] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M69_SJ.out.tab [2026-08-24 21:58:28,148] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M69_SJ.out.tab [2026-08-24 21:58:28,149] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M69_SJ.out.tab [2026-08-24 21:58:28,149] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M69_SJ.out.tab [2026-08-24 21:58:28,166] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M69_SJ.out.tab [2026-08-24 21:58:28,166] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M69_SJ.out.tab [2026-08-24 21:58:28,166] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M69_SJ.out.tab [2026-08-24 21:58:28,166] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M69_SJ.out.tab [2026-08-24 21:58:28,166] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M69_SJ.out.tab [2026-08-24 21:58:28,166] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M69_SJ.out.tab [2026-08-24 21:58:28,166] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M69_SJ.out.tab [2026-08-24 21:58:28,167] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M69_SJ.out.tab [2026-08-24 21:58:28,167] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M69_SJ.out.tab [2026-08-24 21:58:28,167] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M69_SJ.out.tab [2026-08-24 21:58:30,205] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 21:58:30,209] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 21:58:30,209] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 21:58:30,210] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 21:58:30,218] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 21:58:30,218] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 21:58:30,218] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 21:58:30,218] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 21:58:30,218] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 21:58:30,218] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 21:58:30,218] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 21:58:31,220] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 21:58:31,225] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 21:58:31,238] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 21:58:31,238] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 21:58:31,245] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 21:58:31,245] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 21:58:31,245] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 21:58:31,245] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 21:58:31,245] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 21:58:31,245] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 21:58:31,245] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M69_featureCounts.out [2026-08-24 21:58:32,327] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M08_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:58:32,334] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M08_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:58:32,497] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M08_SJ.out.tab [2026-08-24 21:58:32,499] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M08_SJ.out.tab [2026-08-24 21:58:32,500] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M08_SJ.out.tab [2026-08-24 21:58:32,500] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M08_SJ.out.tab [2026-08-24 21:58:32,506] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M08_SJ.out.tab [2026-08-24 21:58:32,506] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M08_SJ.out.tab [2026-08-24 21:58:32,506] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M08_SJ.out.tab [2026-08-24 21:58:32,506] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M08_SJ.out.tab [2026-08-24 21:58:32,506] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M08_SJ.out.tab [2026-08-24 21:58:32,506] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M08_SJ.out.tab [2026-08-24 21:58:32,506] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M08_SJ.out.tab [2026-08-24 21:58:32,506] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M08_SJ.out.tab [2026-08-24 21:58:32,506] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M08_SJ.out.tab [2026-08-24 21:58:32,506] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M08_SJ.out.tab [2026-08-24 21:58:34,592] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M08_marked_dup_metrics.txt [2026-08-24 21:58:34,595] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M08_marked_dup_metrics.txt [2026-08-24 21:58:34,596] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M08_marked_dup_metrics.txt [2026-08-24 21:58:34,596] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M08_marked_dup_metrics.txt [2026-08-24 21:58:34,612] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M08_marked_dup_metrics.txt [2026-08-24 21:58:34,672] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216_M08_hist.pdf [2026-08-24 21:58:34,693] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M08_metrics [2026-08-24 21:58:34,696] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M08_metrics [2026-08-24 21:58:34,696] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M08_metrics [2026-08-24 21:58:34,696] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M08_metrics [2026-08-24 21:58:34,711] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M08_metrics [2026-08-24 21:58:34,842] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 21:58:34,845] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 21:58:34,845] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 21:58:34,845] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 21:58:34,849] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 21:58:34,849] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 21:58:34,849] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 21:58:34,849] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 21:58:34,849] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 21:58:34,849] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 21:58:34,849] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 21:58:35,940] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 21:58:35,943] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 21:58:35,944] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 21:58:35,944] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 21:58:35,948] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 21:58:35,948] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 21:58:35,948] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 21:58:35,948] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 21:58:35,948] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 21:58:35,948] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 21:58:35,948] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M08_featureCounts.out [2026-08-24 21:58:36,860] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M08_metrics [2026-08-24 21:58:36,862] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M08_metrics [2026-08-24 21:58:36,875] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M08_metrics [2026-08-24 21:58:36,961] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M43_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:58:36,963] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M43_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:58:37,119] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M43_SJ.out.tab [2026-08-24 21:58:37,122] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M43_SJ.out.tab [2026-08-24 21:58:37,122] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M43_SJ.out.tab [2026-08-24 21:58:37,122] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M43_SJ.out.tab [2026-08-24 21:58:37,131] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M43_SJ.out.tab [2026-08-24 21:58:37,131] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M43_SJ.out.tab [2026-08-24 21:58:37,131] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M43_SJ.out.tab [2026-08-24 21:58:37,132] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M43_SJ.out.tab [2026-08-24 21:58:37,132] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M43_SJ.out.tab [2026-08-24 21:58:37,132] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M43_SJ.out.tab [2026-08-24 21:58:37,132] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M43_SJ.out.tab [2026-08-24 21:58:37,132] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M43_SJ.out.tab [2026-08-24 21:58:37,132] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M43_SJ.out.tab [2026-08-24 21:58:37,132] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M43_SJ.out.tab [2026-08-24 21:58:39,078] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 21:58:39,080] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 21:58:39,080] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 21:58:39,080] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 21:58:39,084] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 21:58:39,084] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 21:58:39,085] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 21:58:39,085] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 21:58:39,085] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 21:58:39,085] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 21:58:39,085] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 21:58:40,034] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 21:58:40,038] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 21:58:40,038] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 21:58:40,039] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 21:58:40,043] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 21:58:40,043] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 21:58:40,043] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 21:58:40,043] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 21:58:40,043] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 21:58:40,043] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 21:58:40,043] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M43_featureCounts.out [2026-08-24 21:58:41,065] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M65_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:58:41,067] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M65_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:58:41,214] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M65_SJ.out.tab [2026-08-24 21:58:41,219] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M65_SJ.out.tab [2026-08-24 21:58:41,219] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M65_SJ.out.tab [2026-08-24 21:58:41,220] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M65_SJ.out.tab [2026-08-24 21:58:41,226] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M65_SJ.out.tab [2026-08-24 21:58:41,227] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M65_SJ.out.tab [2026-08-24 21:58:41,227] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M65_SJ.out.tab [2026-08-24 21:58:41,227] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M65_SJ.out.tab [2026-08-24 21:58:41,227] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M65_SJ.out.tab [2026-08-24 21:58:41,227] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M65_SJ.out.tab [2026-08-24 21:58:41,227] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M65_SJ.out.tab [2026-08-24 21:58:41,227] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M65_SJ.out.tab [2026-08-24 21:58:41,227] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M65_SJ.out.tab [2026-08-24 21:58:41,227] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M65_SJ.out.tab [2026-08-24 21:58:43,293] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 21:58:43,296] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 21:58:43,297] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 21:58:43,297] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 21:58:43,307] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 21:58:43,307] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 21:58:43,307] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 21:58:43,307] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 21:58:43,307] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 21:58:43,307] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 21:58:43,307] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 21:58:44,224] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 21:58:44,228] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 21:58:44,229] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 21:58:44,229] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 21:58:44,235] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 21:58:44,236] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 21:58:44,236] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 21:58:44,236] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 21:58:44,236] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 21:58:44,236] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 21:58:44,236] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M65_featureCounts.out [2026-08-24 21:58:45,162] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M04_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:58:45,165] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M04_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:58:45,340] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M04_SJ.out.tab [2026-08-24 21:58:45,345] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M04_SJ.out.tab [2026-08-24 21:58:45,346] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M04_SJ.out.tab [2026-08-24 21:58:45,346] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M04_SJ.out.tab [2026-08-24 21:58:45,354] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M04_SJ.out.tab [2026-08-24 21:58:45,354] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M04_SJ.out.tab [2026-08-24 21:58:45,354] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M04_SJ.out.tab [2026-08-24 21:58:45,354] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M04_SJ.out.tab [2026-08-24 21:58:45,354] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M04_SJ.out.tab [2026-08-24 21:58:45,354] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M04_SJ.out.tab [2026-08-24 21:58:45,354] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M04_SJ.out.tab [2026-08-24 21:58:45,354] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M04_SJ.out.tab [2026-08-24 21:58:45,390] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M04_SJ.out.tab [2026-08-24 21:58:47,174] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M04_marked_dup_metrics.txt [2026-08-24 21:58:47,196] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M04_marked_dup_metrics.txt [2026-08-24 21:58:47,198] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M04_marked_dup_metrics.txt [2026-08-24 21:58:47,198] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M04_marked_dup_metrics.txt [2026-08-24 21:58:47,241] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M04_marked_dup_metrics.txt [2026-08-24 21:58:47,354] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M04_metrics [2026-08-24 21:58:47,378] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M04_metrics [2026-08-24 21:58:47,380] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M04_metrics [2026-08-24 21:58:47,380] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M04_metrics [2026-08-24 21:58:47,421] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M04_metrics [2026-08-24 21:58:47,543] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216_M04_hist.pdf [2026-08-24 21:58:47,601] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 21:58:47,621] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 21:58:47,623] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 21:58:47,623] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 21:58:47,656] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 21:58:47,657] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 21:58:47,657] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 21:58:47,657] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 21:58:47,657] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 21:58:47,657] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 21:58:47,657] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 21:58:48,805] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 21:58:48,826] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 21:58:48,829] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 21:58:48,829] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 21:58:48,861] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 21:58:48,861] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 21:58:48,861] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 21:58:48,861] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 21:58:48,861] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 21:58:48,861] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 21:58:48,862] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M04_featureCounts.out [2026-08-24 21:58:49,993] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M04_metrics [2026-08-24 21:58:50,016] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M04_metrics [2026-08-24 21:58:50,054] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M04_metrics [2026-08-24 21:58:50,335] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M37_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:58:50,339] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M37_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:58:50,684] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M37_SJ.out.tab [2026-08-24 21:58:50,696] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M37_SJ.out.tab [2026-08-24 21:58:50,697] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M37_SJ.out.tab [2026-08-24 21:58:50,697] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M37_SJ.out.tab [2026-08-24 21:58:50,725] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M37_SJ.out.tab [2026-08-24 21:58:50,725] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M37_SJ.out.tab [2026-08-24 21:58:50,726] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M37_SJ.out.tab [2026-08-24 21:58:50,726] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M37_SJ.out.tab [2026-08-24 21:58:50,726] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M37_SJ.out.tab [2026-08-24 21:58:50,726] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M37_SJ.out.tab [2026-08-24 21:58:50,726] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M37_SJ.out.tab [2026-08-24 21:58:50,726] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M37_SJ.out.tab [2026-08-24 21:58:50,726] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M37_SJ.out.tab [2026-08-24 21:58:50,726] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M37_SJ.out.tab [2026-08-24 21:58:53,394] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 21:58:53,418] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 21:58:53,420] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 21:58:53,420] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 21:58:53,472] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 21:58:53,472] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 21:58:53,472] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 21:58:53,472] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 21:58:53,472] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 21:58:53,472] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 21:58:53,472] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 21:58:54,775] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 21:58:54,798] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 21:58:54,800] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 21:58:54,800] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 21:58:54,847] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 21:58:54,847] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 21:58:54,847] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 21:58:54,847] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 21:58:54,847] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 21:58:54,848] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 21:58:54,848] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M37_featureCounts.out [2026-08-24 21:58:56,091] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M48_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:58:56,094] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M48_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:58:56,337] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M48_SJ.out.tab [2026-08-24 21:58:56,353] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M48_SJ.out.tab [2026-08-24 21:58:56,355] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M48_SJ.out.tab [2026-08-24 21:58:56,356] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M48_SJ.out.tab [2026-08-24 21:58:56,379] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M48_SJ.out.tab [2026-08-24 21:58:56,379] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M48_SJ.out.tab [2026-08-24 21:58:56,379] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M48_SJ.out.tab [2026-08-24 21:58:56,379] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M48_SJ.out.tab [2026-08-24 21:58:56,379] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M48_SJ.out.tab [2026-08-24 21:58:56,379] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M48_SJ.out.tab [2026-08-24 21:58:56,379] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M48_SJ.out.tab [2026-08-24 21:58:56,379] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M48_SJ.out.tab [2026-08-24 21:58:56,418] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M48_SJ.out.tab [2026-08-24 21:58:58,396] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 21:58:58,406] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 21:58:58,408] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 21:58:58,408] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 21:58:58,426] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 21:58:58,426] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 21:58:58,426] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 21:58:58,426] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 21:58:58,426] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 21:58:58,426] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 21:58:58,426] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 21:58:59,473] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 21:58:59,477] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 21:58:59,478] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 21:58:59,478] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 21:58:59,579] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 21:58:59,579] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 21:58:59,579] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 21:58:59,579] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 21:58:59,579] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 21:58:59,579] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 21:58:59,579] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M48_featureCounts.out [2026-08-24 21:59:00,632] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M61_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:59:00,637] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M61_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:59:00,921] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M61_SJ.out.tab [2026-08-24 21:59:00,933] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M61_SJ.out.tab [2026-08-24 21:59:00,933] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M61_SJ.out.tab [2026-08-24 21:59:00,933] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M61_SJ.out.tab [2026-08-24 21:59:00,945] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M61_SJ.out.tab [2026-08-24 21:59:00,945] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M61_SJ.out.tab [2026-08-24 21:59:00,945] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M61_SJ.out.tab [2026-08-24 21:59:00,945] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M61_SJ.out.tab [2026-08-24 21:59:00,946] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M61_SJ.out.tab [2026-08-24 21:59:00,946] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M61_SJ.out.tab [2026-08-24 21:59:00,946] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M61_SJ.out.tab [2026-08-24 21:59:00,946] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M61_SJ.out.tab [2026-08-24 21:59:00,946] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M61_SJ.out.tab [2026-08-24 21:59:00,946] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M61_SJ.out.tab [2026-08-24 21:59:02,949] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 21:59:02,951] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 21:59:02,952] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 21:59:02,952] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 21:59:02,956] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 21:59:02,956] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 21:59:02,956] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 21:59:02,956] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 21:59:02,956] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 21:59:02,956] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 21:59:02,956] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 21:59:03,972] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 21:59:03,975] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 21:59:03,976] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 21:59:03,976] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 21:59:03,981] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 21:59:03,981] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 21:59:03,981] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 21:59:03,981] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 21:59:03,981] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 21:59:03,981] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 21:59:03,981] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M61_featureCounts.out [2026-08-24 21:59:05,116] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M11_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:59:05,119] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M11_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:59:05,273] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M11_SJ.out.tab [2026-08-24 21:59:05,278] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M11_SJ.out.tab [2026-08-24 21:59:05,279] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M11_SJ.out.tab [2026-08-24 21:59:05,279] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M11_SJ.out.tab [2026-08-24 21:59:05,286] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M11_SJ.out.tab [2026-08-24 21:59:05,286] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M11_SJ.out.tab [2026-08-24 21:59:05,286] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M11_SJ.out.tab [2026-08-24 21:59:05,286] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M11_SJ.out.tab [2026-08-24 21:59:05,286] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M11_SJ.out.tab [2026-08-24 21:59:05,286] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M11_SJ.out.tab [2026-08-24 21:59:05,286] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M11_SJ.out.tab [2026-08-24 21:59:05,286] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M11_SJ.out.tab [2026-08-24 21:59:05,286] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M11_SJ.out.tab [2026-08-24 21:59:05,286] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M11_SJ.out.tab [2026-08-24 21:59:07,157] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M11_marked_dup_metrics.txt [2026-08-24 21:59:07,160] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M11_marked_dup_metrics.txt [2026-08-24 21:59:07,160] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M11_marked_dup_metrics.txt [2026-08-24 21:59:07,161] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M11_marked_dup_metrics.txt [2026-08-24 21:59:07,166] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M11_marked_dup_metrics.txt [2026-08-24 21:59:07,211] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M11_metrics [2026-08-24 21:59:07,216] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M11_metrics [2026-08-24 21:59:07,218] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M11_metrics [2026-08-24 21:59:07,218] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M11_metrics [2026-08-24 21:59:07,226] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M11_metrics [2026-08-24 21:59:07,285] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216_M11_hist.pdf [2026-08-24 21:59:07,333] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 21:59:07,341] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 21:59:07,341] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 21:59:07,341] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 21:59:07,346] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 21:59:07,346] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 21:59:07,346] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 21:59:07,346] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 21:59:07,346] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 21:59:07,346] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 21:59:07,346] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 21:59:08,320] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 21:59:08,325] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 21:59:08,326] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 21:59:08,326] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 21:59:08,339] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 21:59:08,339] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 21:59:08,339] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 21:59:08,339] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 21:59:08,339] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 21:59:08,339] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 21:59:08,339] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M11_featureCounts.out [2026-08-24 21:59:09,264] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M11_metrics [2026-08-24 21:59:09,267] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M11_metrics [2026-08-24 21:59:09,271] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M11_metrics [2026-08-24 21:59:09,361] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M09_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:59:09,364] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M09_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:59:09,432] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M09_SJ.out.tab [2026-08-24 21:59:09,438] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M09_SJ.out.tab [2026-08-24 21:59:09,438] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M09_SJ.out.tab [2026-08-24 21:59:09,438] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M09_SJ.out.tab [2026-08-24 21:59:09,442] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M09_SJ.out.tab [2026-08-24 21:59:09,442] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M09_SJ.out.tab [2026-08-24 21:59:09,442] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M09_SJ.out.tab [2026-08-24 21:59:09,442] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M09_SJ.out.tab [2026-08-24 21:59:09,442] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M09_SJ.out.tab [2026-08-24 21:59:09,442] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M09_SJ.out.tab [2026-08-24 21:59:09,443] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M09_SJ.out.tab [2026-08-24 21:59:09,443] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M09_SJ.out.tab [2026-08-24 21:59:09,443] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M09_SJ.out.tab [2026-08-24 21:59:09,443] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M09_SJ.out.tab [2026-08-24 21:59:11,762] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M09_metrics [2026-08-24 21:59:11,765] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M09_metrics [2026-08-24 21:59:11,765] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M09_metrics [2026-08-24 21:59:11,765] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M09_metrics [2026-08-24 21:59:11,771] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M09_metrics [2026-08-24 21:59:11,837] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216_M09_hist.pdf [2026-08-24 21:59:11,876] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 21:59:11,879] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 21:59:11,879] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 21:59:11,879] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 21:59:11,884] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 21:59:11,884] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 21:59:11,884] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 21:59:11,885] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 21:59:11,885] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 21:59:11,885] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 21:59:11,885] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 21:59:12,826] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 21:59:12,830] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 21:59:12,830] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 21:59:12,830] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 21:59:12,837] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 21:59:12,837] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 21:59:12,837] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 21:59:12,837] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 21:59:12,837] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 21:59:12,837] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 21:59:12,837] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M09_featureCounts.out [2026-08-24 21:59:13,738] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M09_metrics [2026-08-24 21:59:13,741] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M09_metrics [2026-08-24 21:59:13,746] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M09_metrics [2026-08-24 21:59:13,792] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M44_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:59:13,795] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M44_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:59:13,967] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M44_SJ.out.tab [2026-08-24 21:59:13,970] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M44_SJ.out.tab [2026-08-24 21:59:13,970] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M44_SJ.out.tab [2026-08-24 21:59:13,970] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M44_SJ.out.tab [2026-08-24 21:59:13,975] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M44_SJ.out.tab [2026-08-24 21:59:13,976] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M44_SJ.out.tab [2026-08-24 21:59:13,976] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M44_SJ.out.tab [2026-08-24 21:59:13,976] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M44_SJ.out.tab [2026-08-24 21:59:13,976] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M44_SJ.out.tab [2026-08-24 21:59:13,976] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M44_SJ.out.tab [2026-08-24 21:59:13,976] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M44_SJ.out.tab [2026-08-24 21:59:13,976] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M44_SJ.out.tab [2026-08-24 21:59:13,976] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M44_SJ.out.tab [2026-08-24 21:59:13,976] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M44_SJ.out.tab [2026-08-24 21:59:16,064] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 21:59:16,067] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 21:59:16,067] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 21:59:16,067] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 21:59:16,073] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 21:59:16,073] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 21:59:16,073] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 21:59:16,073] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 21:59:16,073] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 21:59:16,073] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 21:59:16,073] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 21:59:17,051] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 21:59:17,053] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 21:59:17,053] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 21:59:17,053] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 21:59:17,057] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 21:59:17,057] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 21:59:17,058] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 21:59:17,058] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 21:59:17,058] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 21:59:17,058] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 21:59:17,058] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M44_featureCounts.out [2026-08-24 21:59:18,003] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M05_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:59:18,005] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M05_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:59:18,120] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M05_SJ.out.tab [2026-08-24 21:59:18,124] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M05_SJ.out.tab [2026-08-24 21:59:18,125] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M05_SJ.out.tab [2026-08-24 21:59:18,125] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M05_SJ.out.tab [2026-08-24 21:59:18,132] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M05_SJ.out.tab [2026-08-24 21:59:18,132] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M05_SJ.out.tab [2026-08-24 21:59:18,132] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M05_SJ.out.tab [2026-08-24 21:59:18,132] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M05_SJ.out.tab [2026-08-24 21:59:18,132] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M05_SJ.out.tab [2026-08-24 21:59:18,132] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M05_SJ.out.tab [2026-08-24 21:59:18,132] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M05_SJ.out.tab [2026-08-24 21:59:18,132] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M05_SJ.out.tab [2026-08-24 21:59:18,132] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M05_SJ.out.tab [2026-08-24 21:59:18,132] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M05_SJ.out.tab [2026-08-24 21:59:20,144] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M05_marked_dup_metrics.txt [2026-08-24 21:59:20,150] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M05_marked_dup_metrics.txt [2026-08-24 21:59:20,150] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M05_marked_dup_metrics.txt [2026-08-24 21:59:20,150] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M05_marked_dup_metrics.txt [2026-08-24 21:59:20,159] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M05_marked_dup_metrics.txt [2026-08-24 21:59:20,196] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M05_metrics [2026-08-24 21:59:20,207] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M05_metrics [2026-08-24 21:59:20,208] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M05_metrics [2026-08-24 21:59:20,208] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M05_metrics [2026-08-24 21:59:20,221] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M05_metrics [2026-08-24 21:59:20,293] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216_M05_hist.pdf [2026-08-24 21:59:20,319] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 21:59:20,325] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 21:59:20,326] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 21:59:20,326] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 21:59:20,336] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 21:59:20,336] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 21:59:20,337] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 21:59:20,337] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 21:59:20,337] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 21:59:20,337] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 21:59:20,337] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 21:59:21,290] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 21:59:21,294] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 21:59:21,294] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 21:59:21,294] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 21:59:21,306] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 21:59:21,306] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 21:59:21,306] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 21:59:21,306] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 21:59:21,307] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 21:59:21,307] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 21:59:21,307] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M05_featureCounts.out [2026-08-24 21:59:22,243] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M05_metrics [2026-08-24 21:59:22,248] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M05_metrics [2026-08-24 21:59:22,255] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M05_metrics [2026-08-24 21:59:22,325] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M38_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:59:22,328] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M38_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:59:22,364] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M38_SJ.out.tab [2026-08-24 21:59:22,368] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M38_SJ.out.tab [2026-08-24 21:59:22,368] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M38_SJ.out.tab [2026-08-24 21:59:22,368] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M38_SJ.out.tab [2026-08-24 21:59:22,373] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M38_SJ.out.tab [2026-08-24 21:59:22,374] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M38_SJ.out.tab [2026-08-24 21:59:22,374] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M38_SJ.out.tab [2026-08-24 21:59:22,374] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M38_SJ.out.tab [2026-08-24 21:59:22,374] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M38_SJ.out.tab [2026-08-24 21:59:22,374] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M38_SJ.out.tab [2026-08-24 21:59:22,374] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M38_SJ.out.tab [2026-08-24 21:59:22,374] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M38_SJ.out.tab [2026-08-24 21:59:22,374] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M38_SJ.out.tab [2026-08-24 21:59:22,374] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M38_SJ.out.tab [2026-08-24 21:59:24,639] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 21:59:24,646] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 21:59:24,648] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 21:59:24,648] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 21:59:24,660] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 21:59:24,660] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 21:59:24,660] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 21:59:24,660] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 21:59:24,660] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 21:59:24,660] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 21:59:24,660] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 21:59:25,613] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 21:59:25,618] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 21:59:25,618] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 21:59:25,618] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 21:59:25,629] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 21:59:25,629] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 21:59:25,629] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 21:59:25,629] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 21:59:25,629] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 21:59:25,629] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 21:59:25,629] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M38_featureCounts.out [2026-08-24 21:59:26,571] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M01_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:59:26,573] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M01_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:59:26,692] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M01_SJ.out.tab [2026-08-24 21:59:26,695] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M01_SJ.out.tab [2026-08-24 21:59:26,696] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M01_SJ.out.tab [2026-08-24 21:59:26,696] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M01_SJ.out.tab [2026-08-24 21:59:26,708] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M01_SJ.out.tab [2026-08-24 21:59:26,709] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M01_SJ.out.tab [2026-08-24 21:59:26,709] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M01_SJ.out.tab [2026-08-24 21:59:26,709] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M01_SJ.out.tab [2026-08-24 21:59:26,709] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M01_SJ.out.tab [2026-08-24 21:59:26,709] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M01_SJ.out.tab [2026-08-24 21:59:26,709] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M01_SJ.out.tab [2026-08-24 21:59:26,709] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M01_SJ.out.tab [2026-08-24 21:59:26,709] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M01_SJ.out.tab [2026-08-24 21:59:26,709] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M01_SJ.out.tab [2026-08-24 21:59:28,784] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M01_marked_dup_metrics.txt [2026-08-24 21:59:28,787] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M01_marked_dup_metrics.txt [2026-08-24 21:59:28,787] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M01_marked_dup_metrics.txt [2026-08-24 21:59:28,787] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M01_marked_dup_metrics.txt [2026-08-24 21:59:28,793] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M01_marked_dup_metrics.txt [2026-08-24 21:59:28,833] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M01_metrics [2026-08-24 21:59:28,838] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M01_metrics [2026-08-24 21:59:28,839] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M01_metrics [2026-08-24 21:59:28,839] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M01_metrics [2026-08-24 21:59:28,848] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M01_metrics [2026-08-24 21:59:28,919] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216_M01_hist.pdf [2026-08-24 21:59:28,972] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 21:59:28,975] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 21:59:28,975] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 21:59:28,975] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 21:59:28,981] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 21:59:28,981] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 21:59:28,981] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 21:59:28,981] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 21:59:28,981] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 21:59:28,981] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 21:59:28,981] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 21:59:29,951] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 21:59:29,953] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 21:59:29,953] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 21:59:29,953] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 21:59:29,957] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 21:59:29,957] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 21:59:29,957] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 21:59:29,957] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 21:59:29,957] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 21:59:29,957] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 21:59:29,957] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M01_featureCounts.out [2026-08-24 21:59:30,845] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M01_metrics [2026-08-24 21:59:30,847] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M01_metrics [2026-08-24 21:59:30,851] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M01_metrics [2026-08-24 21:59:30,897] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M12_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:59:30,902] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M12_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:59:30,982] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M12_SJ.out.tab [2026-08-24 21:59:30,985] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M12_SJ.out.tab [2026-08-24 21:59:30,985] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M12_SJ.out.tab [2026-08-24 21:59:30,985] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M12_SJ.out.tab [2026-08-24 21:59:30,992] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M12_SJ.out.tab [2026-08-24 21:59:30,992] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M12_SJ.out.tab [2026-08-24 21:59:30,992] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M12_SJ.out.tab [2026-08-24 21:59:30,992] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M12_SJ.out.tab [2026-08-24 21:59:30,992] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M12_SJ.out.tab [2026-08-24 21:59:30,992] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M12_SJ.out.tab [2026-08-24 21:59:30,992] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M12_SJ.out.tab [2026-08-24 21:59:30,992] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M12_SJ.out.tab [2026-08-24 21:59:30,992] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M12_SJ.out.tab [2026-08-24 21:59:30,993] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M12_SJ.out.tab [2026-08-24 21:59:33,087] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M12_marked_dup_metrics.txt [2026-08-24 21:59:33,090] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M12_marked_dup_metrics.txt [2026-08-24 21:59:33,090] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M12_marked_dup_metrics.txt [2026-08-24 21:59:33,090] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M12_marked_dup_metrics.txt [2026-08-24 21:59:33,095] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M12_marked_dup_metrics.txt [2026-08-24 21:59:33,130] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216_M12_hist.pdf [2026-08-24 21:59:33,150] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M12_metrics [2026-08-24 21:59:33,152] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M12_metrics [2026-08-24 21:59:33,153] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M12_metrics [2026-08-24 21:59:33,153] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M12_metrics [2026-08-24 21:59:33,158] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M12_metrics [2026-08-24 21:59:33,269] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 21:59:33,272] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 21:59:33,272] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 21:59:33,272] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 21:59:33,277] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 21:59:33,277] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 21:59:33,277] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 21:59:33,277] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 21:59:33,278] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 21:59:33,278] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 21:59:33,278] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 21:59:34,280] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 21:59:34,284] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 21:59:34,285] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 21:59:34,285] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 21:59:34,290] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 21:59:34,291] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 21:59:34,291] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 21:59:34,291] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 21:59:34,291] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 21:59:34,291] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 21:59:34,291] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M12_featureCounts.out [2026-08-24 21:59:35,203] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M12_metrics [2026-08-24 21:59:35,211] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M12_metrics [2026-08-24 21:59:35,227] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M12_metrics [2026-08-24 21:59:35,280] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M06_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:59:35,283] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M06_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:59:35,660] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M06_SJ.out.tab [2026-08-24 21:59:35,663] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M06_SJ.out.tab [2026-08-24 21:59:35,663] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M06_SJ.out.tab [2026-08-24 21:59:35,663] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M06_SJ.out.tab [2026-08-24 21:59:35,669] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M06_SJ.out.tab [2026-08-24 21:59:35,669] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M06_SJ.out.tab [2026-08-24 21:59:35,669] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M06_SJ.out.tab [2026-08-24 21:59:35,669] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M06_SJ.out.tab [2026-08-24 21:59:35,669] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M06_SJ.out.tab [2026-08-24 21:59:35,669] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M06_SJ.out.tab [2026-08-24 21:59:35,669] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M06_SJ.out.tab [2026-08-24 21:59:35,669] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M06_SJ.out.tab [2026-08-24 21:59:35,669] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M06_SJ.out.tab [2026-08-24 21:59:35,669] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M06_SJ.out.tab [2026-08-24 21:59:37,642] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M06_marked_dup_metrics.txt [2026-08-24 21:59:37,644] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M06_marked_dup_metrics.txt [2026-08-24 21:59:37,644] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M06_marked_dup_metrics.txt [2026-08-24 21:59:37,644] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M06_marked_dup_metrics.txt [2026-08-24 21:59:37,649] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M06_marked_dup_metrics.txt [2026-08-24 21:59:37,662] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216_M06_hist.pdf [2026-08-24 21:59:37,684] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M06_metrics [2026-08-24 21:59:37,688] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M06_metrics [2026-08-24 21:59:37,689] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M06_metrics [2026-08-24 21:59:37,689] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M06_metrics [2026-08-24 21:59:37,695] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M06_metrics [2026-08-24 21:59:37,812] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 21:59:37,818] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 21:59:37,819] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 21:59:37,819] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 21:59:37,830] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 21:59:37,830] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 21:59:37,830] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 21:59:37,830] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 21:59:37,830] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 21:59:37,830] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 21:59:37,830] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 21:59:38,788] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 21:59:38,792] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 21:59:38,793] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 21:59:38,793] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 21:59:38,805] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 21:59:38,805] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 21:59:38,805] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 21:59:38,805] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 21:59:38,805] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 21:59:38,805] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 21:59:38,805] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M06_featureCounts.out [2026-08-24 21:59:39,715] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M06_metrics [2026-08-24 21:59:39,719] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M06_metrics [2026-08-24 21:59:39,725] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M06_metrics [2026-08-24 21:59:39,776] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M72_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:59:39,778] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M72_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:59:39,921] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M72_SJ.out.tab [2026-08-24 21:59:39,926] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M72_SJ.out.tab [2026-08-24 21:59:39,927] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M72_SJ.out.tab [2026-08-24 21:59:39,927] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M72_SJ.out.tab [2026-08-24 21:59:39,935] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M72_SJ.out.tab [2026-08-24 21:59:39,935] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M72_SJ.out.tab [2026-08-24 21:59:39,935] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M72_SJ.out.tab [2026-08-24 21:59:39,936] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M72_SJ.out.tab [2026-08-24 21:59:39,936] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M72_SJ.out.tab [2026-08-24 21:59:39,936] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M72_SJ.out.tab [2026-08-24 21:59:39,936] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M72_SJ.out.tab [2026-08-24 21:59:39,936] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M72_SJ.out.tab [2026-08-24 21:59:39,936] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M72_SJ.out.tab [2026-08-24 21:59:39,936] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M72_SJ.out.tab [2026-08-24 21:59:41,821] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 21:59:41,825] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 21:59:41,825] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 21:59:41,826] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 21:59:41,836] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 21:59:41,836] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 21:59:41,836] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 21:59:41,836] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 21:59:41,836] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 21:59:41,836] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 21:59:41,836] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 21:59:42,784] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 21:59:42,787] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 21:59:42,787] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 21:59:42,787] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 21:59:42,791] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 21:59:42,791] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 21:59:42,791] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 21:59:42,791] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 21:59:42,792] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 21:59:42,792] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 21:59:42,792] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M72_featureCounts.out [2026-08-24 21:59:43,729] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M66_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:59:43,732] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M66_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:59:43,786] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M66_SJ.out.tab [2026-08-24 21:59:43,790] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M66_SJ.out.tab [2026-08-24 21:59:43,791] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M66_SJ.out.tab [2026-08-24 21:59:43,791] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M66_SJ.out.tab [2026-08-24 21:59:43,796] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M66_SJ.out.tab [2026-08-24 21:59:43,796] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M66_SJ.out.tab [2026-08-24 21:59:43,796] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M66_SJ.out.tab [2026-08-24 21:59:43,797] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M66_SJ.out.tab [2026-08-24 21:59:43,797] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M66_SJ.out.tab [2026-08-24 21:59:43,797] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M66_SJ.out.tab [2026-08-24 21:59:43,797] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M66_SJ.out.tab [2026-08-24 21:59:43,797] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M66_SJ.out.tab [2026-08-24 21:59:43,797] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M66_SJ.out.tab [2026-08-24 21:59:43,797] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M66_SJ.out.tab [2026-08-24 21:59:45,709] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 21:59:45,716] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 21:59:45,717] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 21:59:45,717] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 21:59:45,725] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 21:59:45,725] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 21:59:45,725] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 21:59:45,725] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 21:59:45,725] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 21:59:45,725] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 21:59:45,725] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 21:59:46,678] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 21:59:46,681] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 21:59:46,682] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 21:59:46,682] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 21:59:46,687] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 21:59:46,687] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 21:59:46,687] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 21:59:46,687] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 21:59:46,687] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 21:59:46,688] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 21:59:46,688] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M66_featureCounts.out [2026-08-24 21:59:47,743] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M40_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:59:47,747] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M40_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:59:48,060] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M40_SJ.out.tab [2026-08-24 21:59:48,071] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M40_SJ.out.tab [2026-08-24 21:59:48,071] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M40_SJ.out.tab [2026-08-24 21:59:48,072] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M40_SJ.out.tab [2026-08-24 21:59:48,081] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M40_SJ.out.tab [2026-08-24 21:59:48,081] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M40_SJ.out.tab [2026-08-24 21:59:48,081] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M40_SJ.out.tab [2026-08-24 21:59:48,081] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M40_SJ.out.tab [2026-08-24 21:59:48,081] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M40_SJ.out.tab [2026-08-24 21:59:48,081] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M40_SJ.out.tab [2026-08-24 21:59:48,081] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M40_SJ.out.tab [2026-08-24 21:59:48,081] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M40_SJ.out.tab [2026-08-24 21:59:48,081] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M40_SJ.out.tab [2026-08-24 21:59:48,081] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M40_SJ.out.tab [2026-08-24 21:59:50,123] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 21:59:50,134] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 21:59:50,135] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 21:59:50,135] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 21:59:50,155] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 21:59:50,156] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 21:59:50,156] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 21:59:50,156] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 21:59:50,156] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 21:59:50,156] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 21:59:50,156] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 21:59:51,172] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 21:59:51,175] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 21:59:51,175] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 21:59:51,175] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 21:59:51,179] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 21:59:51,180] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 21:59:51,180] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 21:59:51,180] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 21:59:51,180] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 21:59:51,180] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 21:59:51,180] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M40_featureCounts.out [2026-08-24 21:59:52,237] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M62_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:59:52,241] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M62_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:59:52,585] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M62_SJ.out.tab [2026-08-24 21:59:52,588] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M62_SJ.out.tab [2026-08-24 21:59:52,588] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M62_SJ.out.tab [2026-08-24 21:59:52,589] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M62_SJ.out.tab [2026-08-24 21:59:52,593] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M62_SJ.out.tab [2026-08-24 21:59:52,593] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M62_SJ.out.tab [2026-08-24 21:59:52,593] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M62_SJ.out.tab [2026-08-24 21:59:52,593] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M62_SJ.out.tab [2026-08-24 21:59:52,593] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M62_SJ.out.tab [2026-08-24 21:59:52,593] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M62_SJ.out.tab [2026-08-24 21:59:52,593] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M62_SJ.out.tab [2026-08-24 21:59:52,593] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M62_SJ.out.tab [2026-08-24 21:59:52,631] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M62_SJ.out.tab [2026-08-24 21:59:54,639] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 21:59:54,660] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 21:59:54,662] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 21:59:54,662] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 21:59:54,677] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 21:59:54,677] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 21:59:54,677] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 21:59:54,677] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 21:59:54,677] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 21:59:54,677] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 21:59:54,677] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 21:59:55,829] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 21:59:55,844] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 21:59:55,845] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 21:59:55,846] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 21:59:55,874] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 21:59:55,874] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 21:59:55,874] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 21:59:55,874] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 21:59:55,874] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 21:59:55,874] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 21:59:55,874] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M62_featureCounts.out [2026-08-24 21:59:57,062] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M45_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 21:59:57,066] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M45_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 21:59:57,513] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M45_SJ.out.tab [2026-08-24 21:59:57,533] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M45_SJ.out.tab [2026-08-24 21:59:57,534] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M45_SJ.out.tab [2026-08-24 21:59:57,535] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M45_SJ.out.tab [2026-08-24 21:59:57,562] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M45_SJ.out.tab [2026-08-24 21:59:57,563] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M45_SJ.out.tab [2026-08-24 21:59:57,563] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M45_SJ.out.tab [2026-08-24 21:59:57,563] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M45_SJ.out.tab [2026-08-24 21:59:57,563] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M45_SJ.out.tab [2026-08-24 21:59:57,563] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M45_SJ.out.tab [2026-08-24 21:59:57,563] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M45_SJ.out.tab [2026-08-24 21:59:57,563] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M45_SJ.out.tab [2026-08-24 21:59:57,563] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M45_SJ.out.tab [2026-08-24 21:59:57,563] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M45_SJ.out.tab [2026-08-24 21:59:59,846] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 21:59:59,864] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 21:59:59,866] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 21:59:59,866] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 21:59:59,881] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 21:59:59,881] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 21:59:59,881] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 21:59:59,881] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 21:59:59,881] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 21:59:59,881] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 21:59:59,881] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 22:00:00,889] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 22:00:00,893] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 22:00:00,893] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 22:00:00,893] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 22:00:00,909] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 22:00:00,909] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 22:00:00,909] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 22:00:00,909] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 22:00:00,909] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 22:00:00,909] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 22:00:00,910] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M45_featureCounts.out [2026-08-24 22:00:02,096] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M67_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 22:00:02,101] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M67_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 22:00:02,661] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M67_SJ.out.tab [2026-08-24 22:00:02,670] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M67_SJ.out.tab [2026-08-24 22:00:02,671] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M67_SJ.out.tab [2026-08-24 22:00:02,671] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M67_SJ.out.tab [2026-08-24 22:00:02,675] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M67_SJ.out.tab [2026-08-24 22:00:02,675] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M67_SJ.out.tab [2026-08-24 22:00:02,675] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M67_SJ.out.tab [2026-08-24 22:00:02,675] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M67_SJ.out.tab [2026-08-24 22:00:02,675] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M67_SJ.out.tab [2026-08-24 22:00:02,675] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M67_SJ.out.tab [2026-08-24 22:00:02,675] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M67_SJ.out.tab [2026-08-24 22:00:02,675] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M67_SJ.out.tab [2026-08-24 22:00:02,675] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M67_SJ.out.tab [2026-08-24 22:00:02,675] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M67_SJ.out.tab [2026-08-24 22:00:04,675] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 22:00:04,678] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 22:00:04,678] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 22:00:04,678] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 22:00:04,683] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 22:00:04,683] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 22:00:04,684] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 22:00:04,684] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 22:00:04,684] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 22:00:04,684] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 22:00:04,684] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 22:00:05,649] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 22:00:05,651] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 22:00:05,651] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 22:00:05,651] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 22:00:05,656] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 22:00:05,656] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 22:00:05,656] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 22:00:05,656] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 22:00:05,656] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 22:00:05,656] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 22:00:05,656] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M67_featureCounts.out [2026-08-24 22:00:06,588] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M41_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 22:00:06,591] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M41_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 22:00:06,660] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M41_SJ.out.tab [2026-08-24 22:00:06,663] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M41_SJ.out.tab [2026-08-24 22:00:06,664] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M41_SJ.out.tab [2026-08-24 22:00:06,664] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M41_SJ.out.tab [2026-08-24 22:00:06,669] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M41_SJ.out.tab [2026-08-24 22:00:06,669] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M41_SJ.out.tab [2026-08-24 22:00:06,670] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M41_SJ.out.tab [2026-08-24 22:00:06,670] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M41_SJ.out.tab [2026-08-24 22:00:06,670] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M41_SJ.out.tab [2026-08-24 22:00:06,670] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M41_SJ.out.tab [2026-08-24 22:00:06,670] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M41_SJ.out.tab [2026-08-24 22:00:06,670] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M41_SJ.out.tab [2026-08-24 22:00:06,670] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M41_SJ.out.tab [2026-08-24 22:00:06,670] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M41_SJ.out.tab [2026-08-24 22:00:08,635] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 22:00:08,637] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 22:00:08,637] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 22:00:08,637] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 22:00:08,642] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 22:00:08,642] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 22:00:08,642] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 22:00:08,642] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 22:00:08,642] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 22:00:08,642] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 22:00:08,642] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 22:00:09,608] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 22:00:09,611] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 22:00:09,612] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 22:00:09,612] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 22:00:09,617] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 22:00:09,617] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 22:00:09,617] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 22:00:09,617] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 22:00:09,617] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 22:00:09,617] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 22:00:09,618] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M41_featureCounts.out [2026-08-24 22:00:10,567] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M39_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 22:00:10,569] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M39_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 22:00:10,605] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M39_SJ.out.tab [2026-08-24 22:00:10,609] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M39_SJ.out.tab [2026-08-24 22:00:10,610] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M39_SJ.out.tab [2026-08-24 22:00:10,610] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M39_SJ.out.tab [2026-08-24 22:00:10,615] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M39_SJ.out.tab [2026-08-24 22:00:10,615] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M39_SJ.out.tab [2026-08-24 22:00:10,615] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M39_SJ.out.tab [2026-08-24 22:00:10,615] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M39_SJ.out.tab [2026-08-24 22:00:10,616] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M39_SJ.out.tab [2026-08-24 22:00:10,616] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M39_SJ.out.tab [2026-08-24 22:00:10,616] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M39_SJ.out.tab [2026-08-24 22:00:10,616] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M39_SJ.out.tab [2026-08-24 22:00:10,616] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M39_SJ.out.tab [2026-08-24 22:00:10,616] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M39_SJ.out.tab [2026-08-24 22:00:12,687] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 22:00:12,692] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 22:00:12,693] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 22:00:12,693] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 22:00:12,703] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 22:00:12,703] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 22:00:12,703] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 22:00:12,703] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 22:00:12,703] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 22:00:12,703] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 22:00:12,703] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 22:00:13,737] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 22:00:13,741] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 22:00:13,741] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 22:00:13,741] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 22:00:13,746] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 22:00:13,746] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 22:00:13,746] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 22:00:13,746] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 22:00:13,746] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 22:00:13,746] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 22:00:13,747] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M39_featureCounts.out [2026-08-24 22:00:14,746] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M63_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 22:00:14,749] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M63_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 22:00:14,856] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M63_SJ.out.tab [2026-08-24 22:00:14,858] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M63_SJ.out.tab [2026-08-24 22:00:14,859] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M63_SJ.out.tab [2026-08-24 22:00:14,859] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M63_SJ.out.tab [2026-08-24 22:00:14,865] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M63_SJ.out.tab [2026-08-24 22:00:14,865] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M63_SJ.out.tab [2026-08-24 22:00:14,865] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M63_SJ.out.tab [2026-08-24 22:00:14,865] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M63_SJ.out.tab [2026-08-24 22:00:14,865] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M63_SJ.out.tab [2026-08-24 22:00:14,865] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M63_SJ.out.tab [2026-08-24 22:00:14,866] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M63_SJ.out.tab [2026-08-24 22:00:14,866] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M63_SJ.out.tab [2026-08-24 22:00:14,866] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M63_SJ.out.tab [2026-08-24 22:00:14,866] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M63_SJ.out.tab [2026-08-24 22:00:16,968] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 22:00:16,980] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 22:00:16,982] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 22:00:16,982] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 22:00:16,999] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 22:00:16,999] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 22:00:16,999] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 22:00:16,999] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 22:00:16,999] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 22:00:16,999] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 22:00:16,999] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 22:00:18,163] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 22:00:18,186] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 22:00:18,188] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 22:00:18,188] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 22:00:18,228] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 22:00:18,228] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 22:00:18,228] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 22:00:18,228] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 22:00:18,228] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 22:00:18,228] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 22:00:18,228] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M63_featureCounts.out [2026-08-24 22:00:19,597] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M02_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 22:00:19,600] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M02_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 22:00:20,352] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M02_SJ.out.tab [2026-08-24 22:00:20,369] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M02_SJ.out.tab [2026-08-24 22:00:20,371] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M02_SJ.out.tab [2026-08-24 22:00:20,371] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M02_SJ.out.tab [2026-08-24 22:00:20,398] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M02_SJ.out.tab [2026-08-24 22:00:20,398] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M02_SJ.out.tab [2026-08-24 22:00:20,398] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M02_SJ.out.tab [2026-08-24 22:00:20,398] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M02_SJ.out.tab [2026-08-24 22:00:20,398] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M02_SJ.out.tab [2026-08-24 22:00:20,398] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M02_SJ.out.tab [2026-08-24 22:00:20,398] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M02_SJ.out.tab [2026-08-24 22:00:20,399] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M02_SJ.out.tab [2026-08-24 22:00:20,399] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M02_SJ.out.tab [2026-08-24 22:00:20,399] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M02_SJ.out.tab [2026-08-24 22:00:22,347] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M02_marked_dup_metrics.txt [2026-08-24 22:00:22,373] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M02_marked_dup_metrics.txt [2026-08-24 22:00:22,377] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M02_marked_dup_metrics.txt [2026-08-24 22:00:22,377] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M02_marked_dup_metrics.txt [2026-08-24 22:00:22,412] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M02_marked_dup_metrics.txt [2026-08-24 22:00:22,523] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M02_metrics [2026-08-24 22:00:22,538] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M02_metrics [2026-08-24 22:00:22,539] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M02_metrics [2026-08-24 22:00:22,539] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M02_metrics [2026-08-24 22:00:22,569] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M02_metrics [2026-08-24 22:00:22,692] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216_M02_hist.pdf [2026-08-24 22:00:22,736] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 22:00:22,754] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 22:00:22,755] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 22:00:22,756] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 22:00:22,792] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 22:00:22,792] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 22:00:22,792] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 22:00:22,792] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 22:00:22,792] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 22:00:22,792] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 22:00:22,792] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 22:00:23,986] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 22:00:24,005] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 22:00:24,008] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 22:00:24,008] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 22:00:24,040] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 22:00:24,040] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 22:00:24,040] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 22:00:24,040] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 22:00:24,040] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 22:00:24,040] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 22:00:24,040] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M02_featureCounts.out [2026-08-24 22:00:25,162] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M02_metrics [2026-08-24 22:00:25,182] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M02_metrics [2026-08-24 22:00:25,220] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M02_metrics [2026-08-24 22:00:25,529] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M46_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 22:00:25,533] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M46_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 22:00:26,163] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M46_SJ.out.tab [2026-08-24 22:00:26,182] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M46_SJ.out.tab [2026-08-24 22:00:26,183] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M46_SJ.out.tab [2026-08-24 22:00:26,183] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M46_SJ.out.tab [2026-08-24 22:00:26,217] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M46_SJ.out.tab [2026-08-24 22:00:26,217] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M46_SJ.out.tab [2026-08-24 22:00:26,217] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M46_SJ.out.tab [2026-08-24 22:00:26,217] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M46_SJ.out.tab [2026-08-24 22:00:26,217] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M46_SJ.out.tab [2026-08-24 22:00:26,217] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M46_SJ.out.tab [2026-08-24 22:00:26,217] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M46_SJ.out.tab [2026-08-24 22:00:26,217] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M46_SJ.out.tab [2026-08-24 22:00:26,255] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M46_SJ.out.tab [2026-08-24 22:00:28,210] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 22:00:28,226] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 22:00:28,228] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 22:00:28,228] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 22:00:28,254] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 22:00:28,254] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 22:00:28,254] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 22:00:28,254] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 22:00:28,254] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 22:00:28,254] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 22:00:28,254] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 22:00:29,390] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 22:00:29,410] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 22:00:29,412] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 22:00:29,412] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 22:00:29,452] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 22:00:29,452] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 22:00:29,452] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 22:00:29,452] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 22:00:29,452] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 22:00:29,452] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 22:00:29,452] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M46_featureCounts.out [2026-08-24 22:00:30,676] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M70_CKDL230039434-1A_22GGJKLT3_L2_2.fq.gz [2026-08-24 22:00:30,679] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G216M70_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz [2026-08-24 22:00:30,894] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M70_SJ.out.tab [2026-08-24 22:00:30,910] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M70_SJ.out.tab [2026-08-24 22:00:30,913] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M70_SJ.out.tab [2026-08-24 22:00:30,913] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M70_SJ.out.tab [2026-08-24 22:00:30,942] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G216_M70_SJ.out.tab [2026-08-24 22:00:30,942] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M70_SJ.out.tab [2026-08-24 22:00:30,942] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M70_SJ.out.tab [2026-08-24 22:00:30,942] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M70_SJ.out.tab [2026-08-24 22:00:30,942] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M70_SJ.out.tab [2026-08-24 22:00:30,942] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M70_SJ.out.tab [2026-08-24 22:00:30,942] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M70_SJ.out.tab [2026-08-24 22:00:30,942] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M70_SJ.out.tab [2026-08-24 22:00:30,942] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G216_M70_SJ.out.tab [2026-08-24 22:00:30,942] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G216_M70_SJ.out.tab [2026-08-24 22:00:33,191] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 22:00:33,195] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 22:00:33,196] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 22:00:33,196] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 22:00:33,213] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 22:00:33,213] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 22:00:33,213] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 22:00:33,213] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 22:00:33,213] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 22:00:33,213] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 22:00:33,213] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 22:00:34,341] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 22:00:34,351] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 22:00:34,353] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 22:00:34,353] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 22:00:34,381] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 22:00:34,381] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 22:00:34,381] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 22:00:34,381] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 22:00:34,381] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 22:00:34,381] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 22:00:34,381] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G216_M70_featureCounts.out [2026-08-24 22:00:35,704] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-24 22:00:35,719] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-24 22:00:35,750] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-08-24 22:00:35,797] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-24 22:00:35,807] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-24 22:00:35,821] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-08-24 22:00:35,867] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-08-24 22:00:35,870] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-08-24 22:00:35,888] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2026-08-24 22:00:35,890] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2026-08-24 22:00:35,896] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2026-08-24 22:00:35,950] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2026-08-24 22:00:35,959] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2026-08-24 22:00:35,978] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M09.o7229363 [2026-08-24 22:00:35,982] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M09.o7229363 [2026-08-24 22:00:35,986] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M09.o7229363 [2026-08-24 22:00:36,024] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M05.o7229359 [2026-08-24 22:00:36,040] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M05.o7229359 [2026-08-24 22:00:36,065] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M05.o7229359 [2026-08-24 22:00:36,087] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M12.o7229366 [2026-08-24 22:00:36,091] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M12.o7229366 [2026-08-24 22:00:36,097] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M12.o7229366 [2026-08-24 22:00:36,168] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M08.o7229362 [2026-08-24 22:00:36,175] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M08.o7229362 [2026-08-24 22:00:36,180] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M08.o7229362 [2026-08-24 22:00:36,192] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M07.o7229361 [2026-08-24 22:00:36,195] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M07.o7229361 [2026-08-24 22:00:36,214] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M07.o7229361 [2026-08-24 22:00:36,280] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M02.o7229356 [2026-08-24 22:00:36,282] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M02.o7229356 [2026-08-24 22:00:36,287] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 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[2026-08-24 22:00:36,425] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M01.o7229355 [2026-08-24 22:00:36,441] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M01.o7229355 [2026-08-24 22:00:36,468] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M01.o7229355 [2026-08-24 22:00:36,495] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M03.o7229357 [2026-08-24 22:00:36,507] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M03.o7229357 [2026-08-24 22:00:36,532] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M03.o7229357 [2026-08-24 22:00:36,657] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M06.o7229360 [2026-08-24 22:00:36,678] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M06.o7229360 [2026-08-24 22:00:36,692] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M06.o7229360 [2026-08-24 22:00:36,754] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M04.o7229358 [2026-08-24 22:00:36,774] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M04.o7229358 [2026-08-24 22:00:36,804] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G216_MM10_G216_M04.o7229358 [2026-08-24 22:00:36,981] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: number_of_unique_reads.csv [2026-08-24 22:00:36,984] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: number_of_unique_reads.csv [2026-08-24 22:00:37,054] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-24 22:00:37,077] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-24 22:00:37,080] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-24 22:00:37,080] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-24 22:00:37,110] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-24 22:00:37,110] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-24 22:00:37,110] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-24 22:00:37,110] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-24 22:00:37,110] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-24 22:00:37,110] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-24 22:00:37,110] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-24 22:00:37,339] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-24 22:00:37,361] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-24 22:00:37,364] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-24 22:00:37,364] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-24 22:00:37,388] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-24 22:00:37,388] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-24 22:00:37,388] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-24 22:00:37,388] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: fastqc_report.html [2026-08-24 22:00:37,388] multiqc [DEBUG ] File 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search pattern filesize limit: Step_06_G216_MM10_G216_M03.o7230373 [2026-08-24 22:00:44,628] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M03.o7230373 [2026-08-24 22:00:44,629] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M03.o7230373 [2026-08-24 22:00:44,629] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M03.o7230373 [2026-08-24 22:00:44,640] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M03.o7230373 [2026-08-24 22:00:44,674] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M04.o7230374 [2026-08-24 22:00:44,677] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M04.o7230374 [2026-08-24 22:00:44,678] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M04.o7230374 [2026-08-24 22:00:44,678] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M04.o7230374 [2026-08-24 22:00:44,683] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M04.o7230374 [2026-08-24 22:00:44,725] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M10.o7230380 [2026-08-24 22:00:44,732] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M10.o7230380 [2026-08-24 22:00:44,732] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M10.o7230380 [2026-08-24 22:00:44,733] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M10.o7230380 [2026-08-24 22:00:44,748] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M10.o7230380 [2026-08-24 22:00:44,776] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M05.o7230375 [2026-08-24 22:00:44,779] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M05.o7230375 [2026-08-24 22:00:44,779] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M05.o7230375 [2026-08-24 22:00:44,779] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M05.o7230375 [2026-08-24 22:00:44,785] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M05.o7230375 [2026-08-24 22:00:44,827] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M09.o7230379 [2026-08-24 22:00:44,835] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M09.o7230379 [2026-08-24 22:00:44,836] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M09.o7230379 [2026-08-24 22:00:44,837] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M09.o7230379 [2026-08-24 22:00:44,850] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M09.o7230379 [2026-08-24 22:00:44,879] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M12.o7230382 [2026-08-24 22:00:44,882] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M12.o7230382 [2026-08-24 22:00:44,882] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M12.o7230382 [2026-08-24 22:00:44,882] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M12.o7230382 [2026-08-24 22:00:44,887] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M12.o7230382 [2026-08-24 22:00:44,952] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M08.o7230378 [2026-08-24 22:00:44,955] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M08.o7230378 [2026-08-24 22:00:44,955] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M08.o7230378 [2026-08-24 22:00:44,955] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M08.o7230378 [2026-08-24 22:00:44,960] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M08.o7230378 [2026-08-24 22:00:44,996] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M01.o7230371 [2026-08-24 22:00:45,008] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M01.o7230371 [2026-08-24 22:00:45,009] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M01.o7230371 [2026-08-24 22:00:45,010] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M01.o7230371 [2026-08-24 22:00:45,028] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M01.o7230371 [2026-08-24 22:00:45,068] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M11.o7230381 [2026-08-24 22:00:45,071] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M11.o7230381 [2026-08-24 22:00:45,071] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M11.o7230381 [2026-08-24 22:00:45,071] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M11.o7230381 [2026-08-24 22:00:45,077] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M11.o7230381 [2026-08-24 22:00:45,120] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M07.o7230377 [2026-08-24 22:00:45,123] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M07.o7230377 [2026-08-24 22:00:45,124] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M07.o7230377 [2026-08-24 22:00:45,124] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M07.o7230377 [2026-08-24 22:00:45,143] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M07.o7230377 [2026-08-24 22:00:45,172] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M02.o7230372 [2026-08-24 22:00:45,175] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M02.o7230372 [2026-08-24 22:00:45,175] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M02.o7230372 [2026-08-24 22:00:45,176] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M02.o7230372 [2026-08-24 22:00:45,181] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M02.o7230372 [2026-08-24 22:00:45,223] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M06.o7230376 [2026-08-24 22:00:45,231] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M06.o7230376 [2026-08-24 22:00:45,233] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M06.o7230376 [2026-08-24 22:00:45,233] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M06.o7230376 [2026-08-24 22:00:45,250] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G216_MM10_G216_M06.o7230376 [2026-08-24 22:00:45,278] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR.new [2026-08-24 22:00:45,281] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR.new [2026-08-24 22:00:45,281] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR.new [2026-08-24 22:00:45,281] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR.new [2026-08-24 22:00:45,287] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR.new [2026-08-24 22:00:45,366] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-24 22:00:45,368] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-24 22:00:45,368] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-24 22:00:45,368] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-24 22:00:45,374] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-08-24 22:00:48,116] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2026-08-24 22:00:48,129] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2026-08-24 22:00:48,135] multiqc [DEBUG ] No samples found: custom_content [2026-08-24 22:00:48,160] multiqc [DEBUG ] No samples found: ccs [2026-08-24 22:00:48,176] multiqc [DEBUG ] No samples found: ngsderive [2026-08-24 22:00:48,191] multiqc [DEBUG ] No samples found: purple [2026-08-24 22:00:48,197] multiqc [DEBUG ] No samples found: conpair [2026-08-24 22:00:48,221] multiqc [DEBUG ] No samples found: lima [2026-08-24 22:00:48,256] multiqc [DEBUG ] No samples found: peddy [2026-08-24 22:00:48,275] multiqc [DEBUG ] No samples found: somalier [2026-08-24 22:00:48,393] multiqc [DEBUG ] No samples found: methylQA [2026-08-24 22:00:48,452] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2026-08-24 22:00:48,452] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2026-08-24 22:00:48,452] multiqc [DEBUG ] No samples found: mosdepth [2026-08-24 22:00:48,466] multiqc [DEBUG ] No samples found: phantompeakqualtools [2026-08-24 22:00:48,486] multiqc [DEBUG ] No samples found: qualimap [2026-08-24 22:00:48,504] multiqc [DEBUG ] No samples found: preseq [2026-08-24 22:00:48,529] multiqc [DEBUG ] No samples found: quast [2026-08-24 22:00:48,571] multiqc [DEBUG ] No samples found: qorts [2026-08-24 22:00:48,598] multiqc [DEBUG ] No samples found: rna_seqc [2026-08-24 22:00:48,624] multiqc [DEBUG ] No samples found: rockhopper [2026-08-24 22:00:48,654] multiqc [DEBUG ] No samples found: rsem [2026-08-24 22:00:48,919] multiqc.modules.rseqc.rseqc [INFO ] Found 36 infer_experiment reports [2026-08-24 22:00:48,984] multiqc [DEBUG ] No samples found: busco [2026-08-24 22:00:49,021] multiqc [DEBUG ] No samples found: bustools [2026-08-24 22:00:49,052] multiqc [DEBUG ] No samples found: goleft_indexcov [2026-08-24 22:00:49,090] multiqc [DEBUG ] No samples found: gffcompare [2026-08-24 22:00:49,116] multiqc [DEBUG ] No samples found: disambiguate [2026-08-24 22:00:49,149] multiqc [DEBUG ] No samples found: supernova [2026-08-24 22:00:49,268] multiqc [DEBUG ] No samples found: deeptools [2026-08-24 22:00:49,304] multiqc [DEBUG ] No samples found: sargasso [2026-08-24 22:00:49,354] multiqc [DEBUG ] No samples found: verifybamid [2026-08-24 22:00:49,407] multiqc [DEBUG ] No samples found: mirtrace [2026-08-24 22:00:49,447] multiqc [DEBUG ] No samples found: happy [2026-08-24 22:00:49,484] multiqc [DEBUG ] No samples found: mirtop [2026-08-24 22:00:49,524] multiqc [DEBUG ] No samples found: sambamba [2026-08-24 22:00:49,563] multiqc [DEBUG ] No samples found: homer [2026-08-24 22:00:49,601] multiqc [DEBUG ] No samples found: hops [2026-08-24 22:00:49,655] multiqc [DEBUG ] No samples found: macs2 [2026-08-24 22:00:49,680] multiqc [DEBUG ] No samples found: theta2 [2026-08-24 22:00:49,712] multiqc [DEBUG ] No samples found: snpeff [2026-08-24 22:00:49,772] multiqc [DEBUG ] No samples found: gatk [2026-08-24 22:00:49,797] multiqc [DEBUG ] No samples found: htseq [2026-08-24 22:00:49,838] multiqc [DEBUG ] No samples found: bcftools [2026-08-24 22:00:49,884] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M68_sorted [2026-08-24 22:00:49,893] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M07_sorted [2026-08-24 22:00:49,904] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M42_sorted [2026-08-24 22:00:49,914] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M64_sorted [2026-08-24 22:00:49,925] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M03_sorted [2026-08-24 22:00:49,937] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M47_sorted [2026-08-24 22:00:49,950] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M71_sorted [2026-08-24 22:00:49,961] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M10_sorted [2026-08-24 22:00:49,971] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M69_sorted [2026-08-24 22:00:49,983] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M08_sorted [2026-08-24 22:00:49,995] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M43_sorted [2026-08-24 22:00:50,005] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M65_sorted [2026-08-24 22:00:50,016] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M04_sorted [2026-08-24 22:00:50,030] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M37_sorted [2026-08-24 22:00:50,043] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M48_sorted [2026-08-24 22:00:50,052] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M61_sorted [2026-08-24 22:00:50,062] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M11_sorted [2026-08-24 22:00:50,074] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M09_sorted [2026-08-24 22:00:50,086] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M44_sorted [2026-08-24 22:00:50,100] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M05_sorted [2026-08-24 22:00:50,110] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M38_sorted [2026-08-24 22:00:50,121] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M01_sorted [2026-08-24 22:00:50,130] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M12_sorted [2026-08-24 22:00:50,140] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M06_sorted [2026-08-24 22:00:50,152] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M72_sorted [2026-08-24 22:00:50,163] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M66_sorted [2026-08-24 22:00:50,196] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M40_sorted [2026-08-24 22:00:50,207] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M62_sorted [2026-08-24 22:00:50,216] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M45_sorted [2026-08-24 22:00:50,220] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M67_sorted [2026-08-24 22:00:50,224] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M41_sorted [2026-08-24 22:00:50,227] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M39_sorted [2026-08-24 22:00:50,230] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M63_sorted [2026-08-24 22:00:50,234] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M02_sorted [2026-08-24 22:00:50,238] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M46_sorted [2026-08-24 22:00:50,241] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G216_M70_sorted [2026-08-24 22:00:50,241] multiqc.modules.featureCounts.feature_counts [INFO ] Found 36 reports [2026-08-24 22:00:50,340] multiqc [DEBUG ] No samples found: fgbio [2026-08-24 22:00:50,465] multiqc [DEBUG ] No samples found: dragen [2026-08-24 22:00:50,502] multiqc [DEBUG ] No samples found: dedup [2026-08-24 22:00:50,539] multiqc [DEBUG ] No samples found: damageprofiler [2026-08-24 22:00:50,853] multiqc [DEBUG ] No samples found: biobambam2 [2026-08-24 22:00:50,884] multiqc [DEBUG ] No samples found: jcvi [2026-08-24 22:00:50,906] multiqc [DEBUG ] No samples found: mtnucratio [2026-08-24 22:00:51,545] multiqc.modules.picard.picard [INFO ] Found 12 InsertSizeMetrics reports [2026-08-24 22:00:51,591] multiqc.modules.picard.picard [INFO ] Found 11 MarkDuplicates reports [2026-08-24 22:00:51,669] multiqc.modules.picard.picard [INFO ] Found 12 RnaSeqMetrics reports [2026-08-24 22:00:51,698] multiqc [DEBUG ] No samples found: vep [2026-08-24 22:00:51,741] multiqc [DEBUG ] No samples found: sentieon [2026-08-24 22:00:51,780] multiqc [DEBUG ] No samples found: prokka [2026-08-24 22:00:51,805] multiqc [DEBUG ] No samples found: qc3C [2026-08-24 22:00:51,831] multiqc [DEBUG ] No samples found: nanostat [2026-08-24 22:00:51,849] multiqc [DEBUG ] No samples found: samblaster [2026-08-24 22:00:52,223] multiqc.modules.samtools.samtools [INFO ] Found 108 flagstat reports [2026-08-24 22:00:52,257] multiqc [DEBUG ] No samples found: sexdeterrmine [2026-08-24 22:00:52,276] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2026-08-24 22:00:52,296] multiqc [DEBUG ] No samples found: bamtools [2026-08-24 22:00:52,312] multiqc [DEBUG ] No samples found: jellyfish [2026-08-24 22:00:52,342] multiqc [DEBUG ] No samples found: vcftools [2026-08-24 22:00:52,372] multiqc [DEBUG ] No samples found: longranger [2026-08-24 22:00:52,401] multiqc [DEBUG ] No samples found: stacks [2026-08-24 22:00:52,436] multiqc [DEBUG ] No samples found: varscan2 [2026-08-24 22:00:52,477] multiqc [DEBUG ] No samples found: snippy [2026-08-24 22:00:52,553] multiqc [DEBUG ] No samples found: bbmap [2026-08-24 22:00:52,590] multiqc [DEBUG ] No samples found: bismark [2026-08-24 22:00:52,615] multiqc [DEBUG ] No samples found: biscuit [2026-08-24 22:00:52,646] multiqc [DEBUG ] No samples found: hicexplorer [2026-08-24 22:00:52,673] multiqc [DEBUG ] No samples found: hicup [2026-08-24 22:00:52,705] multiqc [DEBUG ] No samples found: hicpro [2026-08-24 22:00:52,725] multiqc [DEBUG ] No samples found: salmon [2026-08-24 22:00:52,754] multiqc [DEBUG ] No samples found: kallisto [2026-08-24 22:00:52,790] multiqc [DEBUG ] No samples found: slamdunk [2026-08-24 22:00:56,465] multiqc.modules.star.star [INFO ] Found 36 reports and 36 gene count files [2026-08-24 22:00:56,500] multiqc [DEBUG ] No samples found: hisat2 [2026-08-24 22:00:56,535] multiqc [DEBUG ] No samples found: tophat [2026-08-24 22:00:56,569] multiqc [DEBUG ] No samples found: bowtie2 [2026-08-24 22:00:56,591] multiqc [DEBUG ] No samples found: bowtie1 [2026-08-24 22:00:56,622] multiqc [DEBUG ] No samples found: snpsplit [2026-08-24 22:00:56,654] multiqc [DEBUG ] No samples found: odgi [2026-08-24 22:00:56,688] multiqc [DEBUG ] No samples found: pangolin [2026-08-24 22:00:56,706] multiqc [DEBUG ] No samples found: kat [2026-08-24 22:00:56,722] multiqc [DEBUG ] No samples found: leehom [2026-08-24 22:00:56,757] multiqc [DEBUG ] No samples found: adapterRemoval [2026-08-24 22:00:56,774] multiqc [DEBUG ] No samples found: clipandmerge [2026-08-24 22:00:56,797] multiqc [DEBUG ] No samples found: cutadapt [2026-08-24 22:00:56,818] multiqc [DEBUG ] No samples found: flexbar [2026-08-24 22:00:56,842] multiqc [DEBUG ] No samples found: kaiju [2026-08-24 22:00:56,874] multiqc [DEBUG ] No samples found: kraken [2026-08-24 22:00:56,911] multiqc [DEBUG ] No samples found: malt [2026-08-24 22:00:56,939] multiqc [DEBUG ] No samples found: trimmomatic [2026-08-24 22:00:56,968] multiqc [DEBUG ] No samples found: sickle [2026-08-24 22:00:56,995] multiqc [DEBUG ] No samples found: skewer [2026-08-24 22:00:57,013] multiqc [DEBUG ] No samples found: sortmerna [2026-08-24 22:00:57,027] multiqc [DEBUG ] No samples found: biobloomtools [2026-08-24 22:00:57,066] multiqc [DEBUG ] No samples found: fastq_screen [2026-08-24 22:00:57,102] multiqc [DEBUG ] No samples found: afterqc [2026-08-24 22:00:57,161] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-24 22:00:57,176] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-24 22:00:57,196] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-24 22:00:57,211] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-24 22:00:57,229] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-24 22:00:57,249] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-24 22:00:57,263] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-24 22:00:57,285] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-24 22:00:57,299] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-24 22:00:57,319] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-24 22:00:57,341] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-24 22:00:57,359] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-08-24 22:00:57,360] multiqc.modules.fastp.fastp [INFO ] Found 12 reports [2026-08-24 22:01:00,426] multiqc.modules.fastqc.fastqc [INFO ] Found 24 reports [2026-08-24 22:01:00,428] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2026-08-24 22:01:01,907] multiqc [DEBUG ] No samples found: pychopper [2026-08-24 22:01:01,942] multiqc [DEBUG ] No samples found: pycoqc [2026-08-24 22:01:01,968] multiqc [DEBUG ] No samples found: minionqc [2026-08-24 22:01:01,997] multiqc [DEBUG ] No samples found: multivcfanalyzer [2026-08-24 22:01:02,025] multiqc [DEBUG ] No samples found: clusterflow [2026-08-24 22:01:02,052] multiqc [DEBUG ] No samples found: bcl2fastq [2026-08-24 22:01:02,078] multiqc [DEBUG ] No samples found: bclconvert [2026-08-24 22:01:02,111] multiqc [DEBUG ] No samples found: interop [2026-08-24 22:01:02,153] multiqc [DEBUG ] No samples found: ivar [2026-08-24 22:01:02,192] multiqc [DEBUG ] No samples found: flash [2026-08-24 22:01:02,207] multiqc [DEBUG ] No samples found: seqyclean [2026-08-24 22:01:02,226] multiqc [DEBUG ] No samples found: optitype [2026-08-24 22:01:02,339] multiqc [INFO ] Compressing plot data [2026-08-24 22:01:03,956] multiqc [INFO ] Report : multiqc_report.html [2026-08-24 22:01:03,957] multiqc [INFO ] Data : multiqc_data [2026-08-24 22:01:03,957] multiqc [DEBUG ] Moving data file from '/scratch/tmpicjkn61l/multiqc_data' to '/projectnb/wax-dk/max/G216_MM10/Scripts/99_final_summary/G216_MM10_multiqc_report/multiqc_data' [2026-08-24 22:01:04,669] multiqc [INFO ] MultiQC complete