Sample total_passed total_failed secondary_passed secondary_failed supplementary_passed supplementary_failed duplicates_passed duplicates_failed mapped_passed mapped_failed mapped_passed_pct mapped_failed_pct paired in sequencing_passed paired in sequencing_failed read1_passed read1_failed read2_passed read2_failed properly paired_passed properly paired_failed properly paired_passed_pct properly paired_failed_pct with itself and mate mapped_passed with itself and mate mapped_failed singletons_passed singletons_failed singletons_passed_pct singletons_failed_pct with mate mapped to a different chr_passed with mate mapped to a different chr_failed with mate mapped to a different chr (mapQ >= 5)_passed with mate mapped to a different chr (mapQ >= 5)_failed flagstat_total G213_M10_statistics_for_all_accepted_reads 52749590 0 3427810 0 0 0 0 0 52749590 0 100.0 nan 49321780 0 24660890 0 24660890 0 49321780 0 100.0 nan 49321780 0 0 0 0.0 nan 0 0 0 0 52749590 G213_M10_statistics_for_primary_reads 49321780 0 0 0 0 0 0 0 49321780 0 100.0 nan 49321780 0 24660890 0 24660890 0 49321780 0 100.0 nan 49321780 0 0 0 0.0 nan 0 0 0 0 49321780 G213_M10_statistics_for_primary_unique_reads 46607840 0 0 0 0 0 0 0 46607840 0 100.0 nan 46607840 0 23303920 0 23303920 0 46607840 0 100.0 nan 46607840 0 0 0 0.0 nan 0 0 0 0 46607840 G213_M11_statistics_for_all_accepted_reads 44047004 0 2801748 0 0 0 0 0 44047004 0 100.0 nan 41245256 0 20622628 0 20622628 0 41245256 0 100.0 nan 41245256 0 0 0 0.0 nan 0 0 0 0 44047004 G213_M11_statistics_for_primary_reads 41245256 0 0 0 0 0 0 0 41245256 0 100.0 nan 41245256 0 20622628 0 20622628 0 41245256 0 100.0 nan 41245256 0 0 0 0.0 nan 0 0 0 0 41245256 G213_M11_statistics_for_primary_unique_reads 39089156 0 0 0 0 0 0 0 39089156 0 100.0 nan 39089156 0 19544578 0 19544578 0 39089156 0 100.0 nan 39089156 0 0 0 0.0 nan 0 0 0 0 39089156 G213_M12_statistics_for_all_accepted_reads 45270412 0 2945136 0 0 0 0 0 45270412 0 100.0 nan 42325276 0 21162638 0 21162638 0 42325276 0 100.0 nan 42325276 0 0 0 0.0 nan 0 0 0 0 45270412 G213_M12_statistics_for_primary_reads 42325276 0 0 0 0 0 0 0 42325276 0 100.0 nan 42325276 0 21162638 0 21162638 0 42325276 0 100.0 nan 42325276 0 0 0 0.0 nan 0 0 0 0 42325276 G213_M12_statistics_for_primary_unique_reads 39960208 0 0 0 0 0 0 0 39960208 0 100.0 nan 39960208 0 19980104 0 19980104 0 39960208 0 100.0 nan 39960208 0 0 0 0.0 nan 0 0 0 0 39960208 G213_M13_statistics_for_all_accepted_reads 57260916 0 3905806 0 0 0 0 0 57260916 0 100.0 nan 53355110 0 26677555 0 26677555 0 53355110 0 100.0 nan 53355110 0 0 0 0.0 nan 0 0 0 0 57260916 G213_M13_statistics_for_primary_reads 53355110 0 0 0 0 0 0 0 53355110 0 100.0 nan 53355110 0 26677555 0 26677555 0 53355110 0 100.0 nan 53355110 0 0 0 0.0 nan 0 0 0 0 53355110 G213_M13_statistics_for_primary_unique_reads 50283250 0 0 0 0 0 0 0 50283250 0 100.0 nan 50283250 0 25141625 0 25141625 0 50283250 0 100.0 nan 50283250 0 0 0 0.0 nan 0 0 0 0 50283250 G213_M14_statistics_for_all_accepted_reads 46913704 0 2974038 0 0 0 0 0 46913704 0 100.0 nan 43939666 0 21969833 0 21969833 0 43939666 0 100.0 nan 43939666 0 0 0 0.0 nan 0 0 0 0 46913704 G213_M14_statistics_for_primary_reads 43939666 0 0 0 0 0 0 0 43939666 0 100.0 nan 43939666 0 21969833 0 21969833 0 43939666 0 100.0 nan 43939666 0 0 0 0.0 nan 0 0 0 0 43939666 G213_M14_statistics_for_primary_unique_reads 41563912 0 0 0 0 0 0 0 41563912 0 100.0 nan 41563912 0 20781956 0 20781956 0 41563912 0 100.0 nan 41563912 0 0 0 0.0 nan 0 0 0 0 41563912 G213_M15_statistics_for_all_accepted_reads 47474970 0 3531902 0 0 0 0 0 47474970 0 100.0 nan 43943068 0 21971534 0 21971534 0 43943068 0 100.0 nan 43943068 0 0 0 0.0 nan 0 0 0 0 47474970 G213_M15_statistics_for_primary_reads 43943068 0 0 0 0 0 0 0 43943068 0 100.0 nan 43943068 0 21971534 0 21971534 0 43943068 0 100.0 nan 43943068 0 0 0 0.0 nan 0 0 0 0 43943068 G213_M15_statistics_for_primary_unique_reads 41093508 0 0 0 0 0 0 0 41093508 0 100.0 nan 41093508 0 20546754 0 20546754 0 41093508 0 100.0 nan 41093508 0 0 0 0.0 nan 0 0 0 0 41093508 G213_M16_statistics_for_all_accepted_reads 46975150 0 3250866 0 0 0 0 0 46975150 0 100.0 nan 43724284 0 21862142 0 21862142 0 43724284 0 100.0 nan 43724284 0 0 0 0.0 nan 0 0 0 0 46975150 G213_M16_statistics_for_primary_reads 43724284 0 0 0 0 0 0 0 43724284 0 100.0 nan 43724284 0 21862142 0 21862142 0 43724284 0 100.0 nan 43724284 0 0 0 0.0 nan 0 0 0 0 43724284 G213_M16_statistics_for_primary_unique_reads 41118176 0 0 0 0 0 0 0 41118176 0 100.0 nan 41118176 0 20559088 0 20559088 0 41118176 0 100.0 nan 41118176 0 0 0 0.0 nan 0 0 0 0 41118176 G213_M17_statistics_for_all_accepted_reads 45124802 0 3475580 0 0 0 0 0 45124802 0 100.0 nan 41649222 0 20824611 0 20824611 0 41649222 0 100.0 nan 41649222 0 0 0 0.0 nan 0 0 0 0 45124802 G213_M17_statistics_for_primary_reads 41649222 0 0 0 0 0 0 0 41649222 0 100.0 nan 41649222 0 20824611 0 20824611 0 41649222 0 100.0 nan 41649222 0 0 0 0.0 nan 0 0 0 0 41649222 G213_M17_statistics_for_primary_unique_reads 38807636 0 0 0 0 0 0 0 38807636 0 100.0 nan 38807636 0 19403818 0 19403818 0 38807636 0 100.0 nan 38807636 0 0 0 0.0 nan 0 0 0 0 38807636 G213_M18_statistics_for_all_accepted_reads 45227024 0 3046896 0 0 0 0 0 45227024 0 100.0 nan 42180128 0 21090064 0 21090064 0 42180128 0 100.0 nan 42180128 0 0 0 0.0 nan 0 0 0 0 45227024 G213_M18_statistics_for_primary_reads 42180128 0 0 0 0 0 0 0 42180128 0 100.0 nan 42180128 0 21090064 0 21090064 0 42180128 0 100.0 nan 42180128 0 0 0 0.0 nan 0 0 0 0 42180128 G213_M18_statistics_for_primary_unique_reads 39781614 0 0 0 0 0 0 0 39781614 0 100.0 nan 39781614 0 19890807 0 19890807 0 39781614 0 100.0 nan 39781614 0 0 0 0.0 nan 0 0 0 0 39781614 G213_M19_statistics_for_all_accepted_reads 47200068 0 3112936 0 0 0 0 0 47200068 0 100.0 nan 44087132 0 22043566 0 22043566 0 44087132 0 100.0 nan 44087132 0 0 0 0.0 nan 0 0 0 0 47200068 G213_M19_statistics_for_primary_reads 44087132 0 0 0 0 0 0 0 44087132 0 100.0 nan 44087132 0 22043566 0 22043566 0 44087132 0 100.0 nan 44087132 0 0 0 0.0 nan 0 0 0 0 44087132 G213_M19_statistics_for_primary_unique_reads 41666202 0 0 0 0 0 0 0 41666202 0 100.0 nan 41666202 0 20833101 0 20833101 0 41666202 0 100.0 nan 41666202 0 0 0 0.0 nan 0 0 0 0 41666202 G213_M1_statistics_for_all_accepted_reads 49534620 0 3387932 0 0 0 0 0 49534620 0 100.0 nan 46146688 0 23073344 0 23073344 0 46146688 0 100.0 nan 46146688 0 0 0 0.0 nan 0 0 0 0 49534620 G213_M1_statistics_for_primary_reads 46146688 0 0 0 0 0 0 0 46146688 0 100.0 nan 46146688 0 23073344 0 23073344 0 46146688 0 100.0 nan 46146688 0 0 0 0.0 nan 0 0 0 0 46146688 G213_M1_statistics_for_primary_unique_reads 43430492 0 0 0 0 0 0 0 43430492 0 100.0 nan 43430492 0 21715246 0 21715246 0 43430492 0 100.0 nan 43430492 0 0 0 0.0 nan 0 0 0 0 43430492 G213_M20_statistics_for_all_accepted_reads 43281428 0 2962994 0 0 0 0 0 43281428 0 100.0 nan 40318434 0 20159217 0 20159217 0 40318434 0 100.0 nan 40318434 0 0 0 0.0 nan 0 0 0 0 43281428 G213_M20_statistics_for_primary_reads 40318434 0 0 0 0 0 0 0 40318434 0 100.0 nan 40318434 0 20159217 0 20159217 0 40318434 0 100.0 nan 40318434 0 0 0 0.0 nan 0 0 0 0 40318434 G213_M20_statistics_for_primary_unique_reads 38027956 0 0 0 0 0 0 0 38027956 0 100.0 nan 38027956 0 19013978 0 19013978 0 38027956 0 100.0 nan 38027956 0 0 0 0.0 nan 0 0 0 0 38027956 G213_M21_statistics_for_all_accepted_reads 49182788 0 3327666 0 0 0 0 0 49182788 0 100.0 nan 45855122 0 22927561 0 22927561 0 45855122 0 100.0 nan 45855122 0 0 0 0.0 nan 0 0 0 0 49182788 G213_M21_statistics_for_primary_reads 45855122 0 0 0 0 0 0 0 45855122 0 100.0 nan 45855122 0 22927561 0 22927561 0 45855122 0 100.0 nan 45855122 0 0 0 0.0 nan 0 0 0 0 45855122 G213_M21_statistics_for_primary_unique_reads 43192908 0 0 0 0 0 0 0 43192908 0 100.0 nan 43192908 0 21596454 0 21596454 0 43192908 0 100.0 nan 43192908 0 0 0 0.0 nan 0 0 0 0 43192908 G213_M22_statistics_for_all_accepted_reads 43046618 0 2686064 0 0 0 0 0 43046618 0 100.0 nan 40360554 0 20180277 0 20180277 0 40360554 0 100.0 nan 40360554 0 0 0 0.0 nan 0 0 0 0 43046618 G213_M22_statistics_for_primary_reads 40360554 0 0 0 0 0 0 0 40360554 0 100.0 nan 40360554 0 20180277 0 20180277 0 40360554 0 100.0 nan 40360554 0 0 0 0.0 nan 0 0 0 0 40360554 G213_M22_statistics_for_primary_unique_reads 38258658 0 0 0 0 0 0 0 38258658 0 100.0 nan 38258658 0 19129329 0 19129329 0 38258658 0 100.0 nan 38258658 0 0 0 0.0 nan 0 0 0 0 38258658 G213_M23_statistics_for_all_accepted_reads 47107286 0 3057376 0 0 0 0 0 47107286 0 100.0 nan 44049910 0 22024955 0 22024955 0 44049910 0 100.0 nan 44049910 0 0 0 0.0 nan 0 0 0 0 47107286 G213_M23_statistics_for_primary_reads 44049910 0 0 0 0 0 0 0 44049910 0 100.0 nan 44049910 0 22024955 0 22024955 0 44049910 0 100.0 nan 44049910 0 0 0 0.0 nan 0 0 0 0 44049910 G213_M23_statistics_for_primary_unique_reads 41609048 0 0 0 0 0 0 0 41609048 0 100.0 nan 41609048 0 20804524 0 20804524 0 41609048 0 100.0 nan 41609048 0 0 0 0.0 nan 0 0 0 0 41609048 G213_M24_statistics_for_all_accepted_reads 42205654 0 2860782 0 0 0 0 0 42205654 0 100.0 nan 39344872 0 19672436 0 19672436 0 39344872 0 100.0 nan 39344872 0 0 0 0.0 nan 0 0 0 0 42205654 G213_M24_statistics_for_primary_reads 39344872 0 0 0 0 0 0 0 39344872 0 100.0 nan 39344872 0 19672436 0 19672436 0 39344872 0 100.0 nan 39344872 0 0 0 0.0 nan 0 0 0 0 39344872 G213_M24_statistics_for_primary_unique_reads 37039478 0 0 0 0 0 0 0 37039478 0 100.0 nan 37039478 0 18519739 0 18519739 0 37039478 0 100.0 nan 37039478 0 0 0 0.0 nan 0 0 0 0 37039478 G213_M2_statistics_for_all_accepted_reads 46137158 0 3158114 0 0 0 0 0 46137158 0 100.0 nan 42979044 0 21489522 0 21489522 0 42979044 0 100.0 nan 42979044 0 0 0 0.0 nan 0 0 0 0 46137158 G213_M2_statistics_for_primary_reads 42979044 0 0 0 0 0 0 0 42979044 0 100.0 nan 42979044 0 21489522 0 21489522 0 42979044 0 100.0 nan 42979044 0 0 0 0.0 nan 0 0 0 0 42979044 G213_M2_statistics_for_primary_unique_reads 40582988 0 0 0 0 0 0 0 40582988 0 100.0 nan 40582988 0 20291494 0 20291494 0 40582988 0 100.0 nan 40582988 0 0 0 0.0 nan 0 0 0 0 40582988 G213_M3_statistics_for_all_accepted_reads 41614134 0 3493590 0 0 0 0 0 41614134 0 100.0 nan 38120544 0 19060272 0 19060272 0 38120544 0 100.0 nan 38120544 0 0 0 0.0 nan 0 0 0 0 41614134 G213_M3_statistics_for_primary_reads 38120544 0 0 0 0 0 0 0 38120544 0 100.0 nan 38120544 0 19060272 0 19060272 0 38120544 0 100.0 nan 38120544 0 0 0 0.0 nan 0 0 0 0 38120544 G213_M3_statistics_for_primary_unique_reads 35297162 0 0 0 0 0 0 0 35297162 0 100.0 nan 35297162 0 17648581 0 17648581 0 35297162 0 100.0 nan 35297162 0 0 0 0.0 nan 0 0 0 0 35297162 G213_M4_statistics_for_all_accepted_reads 44574018 0 3202808 0 0 0 0 0 44574018 0 100.0 nan 41371210 0 20685605 0 20685605 0 41371210 0 100.0 nan 41371210 0 0 0 0.0 nan 0 0 0 0 44574018 G213_M4_statistics_for_primary_reads 41371210 0 0 0 0 0 0 0 41371210 0 100.0 nan 41371210 0 20685605 0 20685605 0 41371210 0 100.0 nan 41371210 0 0 0 0.0 nan 0 0 0 0 41371210 G213_M4_statistics_for_primary_unique_reads 38812016 0 0 0 0 0 0 0 38812016 0 100.0 nan 38812016 0 19406008 0 19406008 0 38812016 0 100.0 nan 38812016 0 0 0 0.0 nan 0 0 0 0 38812016 G213_M5_statistics_for_all_accepted_reads 43658546 0 3220138 0 0 0 0 0 43658546 0 100.0 nan 40438408 0 20219204 0 20219204 0 40438408 0 100.0 nan 40438408 0 0 0 0.0 nan 0 0 0 0 43658546 G213_M5_statistics_for_primary_reads 40438408 0 0 0 0 0 0 0 40438408 0 100.0 nan 40438408 0 20219204 0 20219204 0 40438408 0 100.0 nan 40438408 0 0 0 0.0 nan 0 0 0 0 40438408 G213_M5_statistics_for_primary_unique_reads 37804336 0 0 0 0 0 0 0 37804336 0 100.0 nan 37804336 0 18902168 0 18902168 0 37804336 0 100.0 nan 37804336 0 0 0 0.0 nan 0 0 0 0 37804336 G213_M6_statistics_for_all_accepted_reads 44358158 0 3542620 0 0 0 0 0 44358158 0 100.0 nan 40815538 0 20407769 0 20407769 0 40815538 0 100.0 nan 40815538 0 0 0 0.0 nan 0 0 0 0 44358158 G213_M6_statistics_for_primary_reads 40815538 0 0 0 0 0 0 0 40815538 0 100.0 nan 40815538 0 20407769 0 20407769 0 40815538 0 100.0 nan 40815538 0 0 0 0.0 nan 0 0 0 0 40815538 G213_M6_statistics_for_primary_unique_reads 38096168 0 0 0 0 0 0 0 38096168 0 100.0 nan 38096168 0 19048084 0 19048084 0 38096168 0 100.0 nan 38096168 0 0 0 0.0 nan 0 0 0 0 38096168 G213_M7_statistics_for_all_accepted_reads 51221640 0 3351570 0 0 0 0 0 51221640 0 100.0 nan 47870070 0 23935035 0 23935035 0 47870070 0 100.0 nan 47870070 0 0 0 0.0 nan 0 0 0 0 51221640 G213_M7_statistics_for_primary_reads 47870070 0 0 0 0 0 0 0 47870070 0 100.0 nan 47870070 0 23935035 0 23935035 0 47870070 0 100.0 nan 47870070 0 0 0 0.0 nan 0 0 0 0 47870070 G213_M7_statistics_for_primary_unique_reads 45201690 0 0 0 0 0 0 0 45201690 0 100.0 nan 45201690 0 22600845 0 22600845 0 45201690 0 100.0 nan 45201690 0 0 0 0.0 nan 0 0 0 0 45201690 G213_M8_statistics_for_all_accepted_reads 45893258 0 3796090 0 0 0 0 0 45893258 0 100.0 nan 42097168 0 21048584 0 21048584 0 42097168 0 100.0 nan 42097168 0 0 0 0.0 nan 0 0 0 0 45893258 G213_M8_statistics_for_primary_reads 42097168 0 0 0 0 0 0 0 42097168 0 100.0 nan 42097168 0 21048584 0 21048584 0 42097168 0 100.0 nan 42097168 0 0 0 0.0 nan 0 0 0 0 42097168 G213_M8_statistics_for_primary_unique_reads 39148604 0 0 0 0 0 0 0 39148604 0 100.0 nan 39148604 0 19574302 0 19574302 0 39148604 0 100.0 nan 39148604 0 0 0 0.0 nan 0 0 0 0 39148604 G213_M9_statistics_for_all_accepted_reads 41479110 0 3111848 0 0 0 0 0 41479110 0 100.0 nan 38367262 0 19183631 0 19183631 0 38367262 0 100.0 nan 38367262 0 0 0 0.0 nan 0 0 0 0 41479110 G213_M9_statistics_for_primary_reads 38367262 0 0 0 0 0 0 0 38367262 0 100.0 nan 38367262 0 19183631 0 19183631 0 38367262 0 100.0 nan 38367262 0 0 0 0.0 nan 0 0 0 0 38367262 G213_M9_statistics_for_primary_unique_reads 35824238 0 0 0 0 0 0 0 35824238 0 100.0 nan 35824238 0 17912119 0 17912119 0 35824238 0 100.0 nan 35824238 0 0 0 0.0 nan 0 0 0 0 35824238