[2026-09-09 11:42:52,528] multiqc [DEBUG ] This is MultiQC v1.11 [2026-09-09 11:42:52,529] multiqc [DEBUG ] No MultiQC config found: /projectnb/wax-es/routines/condaenv/multiqc/lib/python3.9/site-packages/multiqc_config.yaml [2026-09-09 11:42:52,530] multiqc [DEBUG ] No MultiQC config found: /usr2/collab/mpyatkov/.multiqc_config.yaml [2026-09-09 11:42:52,551] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2026-09-09 11:42:52,553] multiqc [DEBUG ] Loading config settings from: /projectnb/wax-dk/max/G213_RKinemann/pipeline_mm10/Scripts/99_final_summary/Scripts/multiqc_config.yaml [2026-09-09 11:42:52,554] multiqc [DEBUG ] New config 'table_columns_visible': {'FastQC': {'percent_duplicates': False}} [2026-09-09 11:42:52,554] multiqc [DEBUG ] New config 'remove_sections': ['fastqc_sequence_counts'] [2026-09-09 11:42:52,554] multiqc [DEBUG ] Command used: /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G213_RKinemann/pipeline_mm10/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G213_RKinemann/pipeline_mm10/SAMPLES /projectnb/wax-dk/max/G213_RKinemann/pipeline_mm10/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G213_RKinemann/pipeline_mm10/Scripts/06_CollectMetrics/ [2026-09-09 11:42:53,071] multiqc [WARNING] MultiQC Version v1.35 now available! [2026-09-09 11:42:53,071] multiqc [DEBUG ] Command : /projectnb/wax-es/routines/condaenv/multiqc/bin/multiqc --no-ansi -c /projectnb/wax-dk/max/G213_RKinemann/pipeline_mm10/Scripts/99_final_summary/Scripts/multiqc_config.yaml /projectnb/wax-dk/max/G213_RKinemann/pipeline_mm10/SAMPLES /projectnb/wax-dk/max/G213_RKinemann/pipeline_mm10/Scripts/03_FASTQC/ /projectnb/wax-dk/max/G213_RKinemann/pipeline_mm10/Scripts/06_CollectMetrics/ [2026-09-09 11:42:53,071] multiqc [DEBUG ] Working dir : /projectnb/wax-dk/max/G213_RKinemann/pipeline_mm10/Scripts/99_final_summary/G213_MM10_multiqc_report [2026-09-09 11:42:53,072] multiqc [DEBUG ] Template : default [2026-09-09 11:42:53,072] multiqc [DEBUG ] Running Python 3.9.6 | packaged by conda-forge | (default, Jul 11 2021, 03:39:48) [GCC 9.3.0] [2026-09-09 11:42:53,072] multiqc [DEBUG ] Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, odgi, pangolin, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pychopper, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype [2026-09-09 11:42:53,072] multiqc [DEBUG ] Using temporary directory for creating report: /scratch/tmpw9ygw8nd [2026-09-09 11:42:53,549] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G213_RKinemann/pipeline_mm10/SAMPLES [2026-09-09 11:42:53,549] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G213_RKinemann/pipeline_mm10/Scripts/03_FASTQC [2026-09-09 11:42:53,549] multiqc [INFO ] Search path : /projectnb/wax-dk/max/G213_RKinemann/pipeline_mm10/Scripts/06_CollectMetrics [2026-09-09 11:42:54,493] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_5_1.fq.gz [2026-09-09 11:42:54,493] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_5_2.fq.gz [2026-09-09 11:42:54,626] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M2_primary_unique.bam.bai [2026-09-09 11:42:54,626] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M2_primary_unique.bam [2026-09-09 11:42:54,656] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M2_SJ.out.tab [2026-09-09 11:42:54,661] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M2_SJ.out.tab [2026-09-09 11:42:54,661] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M2_SJ.out.tab [2026-09-09 11:42:54,661] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M2_SJ.out.tab [2026-09-09 11:42:54,668] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G213_M2_SJ.out.tab [2026-09-09 11:42:54,668] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M2_SJ.out.tab [2026-09-09 11:42:54,668] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M2_SJ.out.tab [2026-09-09 11:42:54,668] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M2_SJ.out.tab [2026-09-09 11:42:54,668] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M2_SJ.out.tab [2026-09-09 11:42:54,668] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M2_SJ.out.tab [2026-09-09 11:42:54,668] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M2_SJ.out.tab [2026-09-09 11:42:54,668] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M2_SJ.out.tab [2026-09-09 11:42:54,669] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G213_M2_SJ.out.tab [2026-09-09 11:42:54,669] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G213_M2_SJ.out.tab [2026-09-09 11:42:56,850] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M2_marked_dup_metrics.txt [2026-09-09 11:42:56,854] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M2_marked_dup_metrics.txt [2026-09-09 11:42:56,855] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M2_marked_dup_metrics.txt [2026-09-09 11:42:56,855] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M2_marked_dup_metrics.txt [2026-09-09 11:42:56,860] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M2_marked_dup_metrics.txt [2026-09-09 11:42:56,879] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M2_hist.pdf [2026-09-09 11:42:56,901] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M2_metrics [2026-09-09 11:42:56,904] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M2_metrics [2026-09-09 11:42:56,905] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M2_metrics [2026-09-09 11:42:56,905] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M2_metrics [2026-09-09 11:42:56,910] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M2_metrics [2026-09-09 11:42:57,022] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M2_featureCounts.out [2026-09-09 11:42:57,026] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M2_featureCounts.out [2026-09-09 11:42:57,026] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M2_featureCounts.out [2026-09-09 11:42:57,026] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M2_featureCounts.out [2026-09-09 11:42:57,032] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M2_featureCounts.out [2026-09-09 11:42:57,032] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M2_featureCounts.out [2026-09-09 11:42:57,032] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M2_featureCounts.out [2026-09-09 11:42:57,032] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M2_featureCounts.out [2026-09-09 11:42:57,032] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M2_featureCounts.out [2026-09-09 11:42:57,032] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M2_featureCounts.out [2026-09-09 11:42:57,032] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M2_featureCounts.out [2026-09-09 11:42:58,001] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M2_featureCounts.out [2026-09-09 11:42:58,006] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M2_featureCounts.out [2026-09-09 11:42:58,014] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M2_featureCounts.out [2026-09-09 11:42:58,014] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M2_featureCounts.out [2026-09-09 11:42:58,019] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M2_featureCounts.out [2026-09-09 11:42:58,019] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M2_featureCounts.out [2026-09-09 11:42:58,019] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M2_featureCounts.out [2026-09-09 11:42:58,019] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M2_featureCounts.out [2026-09-09 11:42:58,019] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M2_featureCounts.out [2026-09-09 11:42:58,020] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M2_featureCounts.out [2026-09-09 11:42:58,020] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M2_featureCounts.out [2026-09-09 11:42:58,961] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M2_metrics [2026-09-09 11:42:58,964] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M2_metrics [2026-09-09 11:42:58,969] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M2_metrics [2026-09-09 11:42:59,028] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_2_2.fq.gz [2026-09-09 11:42:59,028] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_2_1.fq.gz [2026-09-09 11:42:59,173] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M13_primary_unique.bam.bai [2026-09-09 11:42:59,174] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M13_primary_unique.bam [2026-09-09 11:42:59,207] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M13_SJ.out.tab [2026-09-09 11:42:59,211] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M13_SJ.out.tab [2026-09-09 11:42:59,212] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M13_SJ.out.tab [2026-09-09 11:42:59,212] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M13_SJ.out.tab [2026-09-09 11:42:59,218] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G213_M13_SJ.out.tab [2026-09-09 11:42:59,218] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M13_SJ.out.tab [2026-09-09 11:42:59,218] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M13_SJ.out.tab [2026-09-09 11:42:59,218] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M13_SJ.out.tab [2026-09-09 11:42:59,218] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M13_SJ.out.tab [2026-09-09 11:42:59,218] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M13_SJ.out.tab [2026-09-09 11:42:59,219] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M13_SJ.out.tab [2026-09-09 11:42:59,219] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M13_SJ.out.tab [2026-09-09 11:42:59,219] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G213_M13_SJ.out.tab [2026-09-09 11:42:59,219] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G213_M13_SJ.out.tab [2026-09-09 11:43:01,518] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M13_marked_dup_metrics.txt [2026-09-09 11:43:01,523] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M13_marked_dup_metrics.txt [2026-09-09 11:43:01,524] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M13_marked_dup_metrics.txt [2026-09-09 11:43:01,524] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M13_marked_dup_metrics.txt [2026-09-09 11:43:01,533] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M13_marked_dup_metrics.txt [2026-09-09 11:43:01,561] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M13_hist.pdf [2026-09-09 11:43:01,577] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M13_metrics [2026-09-09 11:43:01,581] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M13_metrics [2026-09-09 11:43:01,581] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M13_metrics [2026-09-09 11:43:01,581] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M13_metrics [2026-09-09 11:43:01,586] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M13_metrics [2026-09-09 11:43:01,678] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M13_featureCounts.out [2026-09-09 11:43:01,682] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M13_featureCounts.out [2026-09-09 11:43:01,682] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M13_featureCounts.out [2026-09-09 11:43:01,682] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M13_featureCounts.out [2026-09-09 11:43:01,689] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M13_featureCounts.out [2026-09-09 11:43:01,689] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M13_featureCounts.out [2026-09-09 11:43:01,689] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M13_featureCounts.out [2026-09-09 11:43:01,690] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M13_featureCounts.out [2026-09-09 11:43:01,690] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M13_featureCounts.out [2026-09-09 11:43:01,690] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M13_featureCounts.out [2026-09-09 11:43:01,690] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M13_featureCounts.out [2026-09-09 11:43:02,749] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M13_featureCounts.out [2026-09-09 11:43:02,784] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M13_featureCounts.out [2026-09-09 11:43:02,787] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M13_featureCounts.out [2026-09-09 11:43:02,787] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M13_featureCounts.out [2026-09-09 11:43:02,817] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M13_featureCounts.out [2026-09-09 11:43:02,817] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M13_featureCounts.out [2026-09-09 11:43:02,818] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M13_featureCounts.out [2026-09-09 11:43:02,818] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M13_featureCounts.out [2026-09-09 11:43:02,818] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M13_featureCounts.out [2026-09-09 11:43:02,818] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M13_featureCounts.out [2026-09-09 11:43:02,818] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M13_featureCounts.out [2026-09-09 11:43:03,706] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M13_metrics [2026-09-09 11:43:03,709] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M13_metrics [2026-09-09 11:43:03,714] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M13_metrics [2026-09-09 11:43:03,790] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_18_2.fq.gz [2026-09-09 11:43:03,790] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_18_1.fq.gz [2026-09-09 11:43:03,948] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M11_primary_unique.bam.bai [2026-09-09 11:43:04,043] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M11_SJ.out.tab [2026-09-09 11:43:04,048] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M11_SJ.out.tab [2026-09-09 11:43:04,048] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M11_SJ.out.tab [2026-09-09 11:43:04,049] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M11_SJ.out.tab [2026-09-09 11:43:04,057] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G213_M11_SJ.out.tab [2026-09-09 11:43:04,057] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M11_SJ.out.tab [2026-09-09 11:43:04,057] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M11_SJ.out.tab [2026-09-09 11:43:04,057] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M11_SJ.out.tab [2026-09-09 11:43:04,057] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M11_SJ.out.tab [2026-09-09 11:43:04,058] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M11_SJ.out.tab [2026-09-09 11:43:04,058] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M11_SJ.out.tab [2026-09-09 11:43:04,058] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M11_SJ.out.tab [2026-09-09 11:43:04,058] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G213_M11_SJ.out.tab [2026-09-09 11:43:04,058] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G213_M11_SJ.out.tab [2026-09-09 11:43:06,208] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M11_primary_unique.bam [2026-09-09 11:43:06,223] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M11_marked_dup_metrics.txt [2026-09-09 11:43:06,226] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M11_marked_dup_metrics.txt [2026-09-09 11:43:06,227] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M11_marked_dup_metrics.txt [2026-09-09 11:43:06,227] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M11_marked_dup_metrics.txt [2026-09-09 11:43:06,234] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M11_marked_dup_metrics.txt [2026-09-09 11:43:06,269] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M11_metrics [2026-09-09 11:43:06,274] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M11_metrics [2026-09-09 11:43:06,275] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M11_metrics [2026-09-09 11:43:06,275] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M11_metrics [2026-09-09 11:43:06,283] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M11_metrics [2026-09-09 11:43:06,335] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M11_hist.pdf [2026-09-09 11:43:06,362] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M11_featureCounts.out [2026-09-09 11:43:06,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M11_featureCounts.out [2026-09-09 11:43:06,367] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M11_featureCounts.out [2026-09-09 11:43:06,367] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M11_featureCounts.out [2026-09-09 11:43:06,374] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M11_featureCounts.out [2026-09-09 11:43:06,374] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M11_featureCounts.out [2026-09-09 11:43:06,374] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M11_featureCounts.out [2026-09-09 11:43:06,374] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M11_featureCounts.out [2026-09-09 11:43:06,374] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M11_featureCounts.out [2026-09-09 11:43:06,374] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M11_featureCounts.out [2026-09-09 11:43:06,374] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M11_featureCounts.out [2026-09-09 11:43:07,323] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M11_featureCounts.out [2026-09-09 11:43:07,328] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M11_featureCounts.out [2026-09-09 11:43:07,329] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M11_featureCounts.out [2026-09-09 11:43:07,329] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M11_featureCounts.out [2026-09-09 11:43:07,335] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M11_featureCounts.out [2026-09-09 11:43:07,336] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M11_featureCounts.out [2026-09-09 11:43:07,336] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M11_featureCounts.out [2026-09-09 11:43:07,336] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M11_featureCounts.out [2026-09-09 11:43:07,336] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M11_featureCounts.out [2026-09-09 11:43:07,336] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M11_featureCounts.out [2026-09-09 11:43:07,336] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M11_featureCounts.out [2026-09-09 11:43:08,275] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M11_metrics [2026-09-09 11:43:08,280] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M11_metrics [2026-09-09 11:43:08,286] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M11_metrics [2026-09-09 11:43:08,338] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_3_2.fq.gz [2026-09-09 11:43:08,339] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_3_1.fq.gz [2026-09-09 11:43:08,414] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M19_SJ.out.tab [2026-09-09 11:43:08,418] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M19_SJ.out.tab [2026-09-09 11:43:08,473] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M19_SJ.out.tab [2026-09-09 11:43:08,473] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M19_SJ.out.tab [2026-09-09 11:43:08,481] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G213_M19_SJ.out.tab [2026-09-09 11:43:08,481] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M19_SJ.out.tab [2026-09-09 11:43:08,481] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M19_SJ.out.tab [2026-09-09 11:43:08,481] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M19_SJ.out.tab [2026-09-09 11:43:08,481] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M19_SJ.out.tab [2026-09-09 11:43:08,482] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M19_SJ.out.tab [2026-09-09 11:43:08,482] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M19_SJ.out.tab [2026-09-09 11:43:08,482] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M19_SJ.out.tab [2026-09-09 11:43:08,482] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G213_M19_SJ.out.tab [2026-09-09 11:43:08,482] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G213_M19_SJ.out.tab [2026-09-09 11:43:10,641] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M19_primary_unique.bam [2026-09-09 11:43:10,718] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M19_primary_unique.bam.bai [2026-09-09 11:43:10,739] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M19_marked_dup_metrics.txt [2026-09-09 11:43:10,743] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M19_marked_dup_metrics.txt [2026-09-09 11:43:10,744] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M19_marked_dup_metrics.txt [2026-09-09 11:43:10,744] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M19_marked_dup_metrics.txt [2026-09-09 11:43:10,750] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M19_marked_dup_metrics.txt [2026-09-09 11:43:10,765] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M19_hist.pdf [2026-09-09 11:43:10,783] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M19_metrics [2026-09-09 11:43:10,786] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M19_metrics [2026-09-09 11:43:10,786] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M19_metrics [2026-09-09 11:43:10,786] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M19_metrics [2026-09-09 11:43:10,791] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M19_metrics [2026-09-09 11:43:10,882] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M19_featureCounts.out [2026-09-09 11:43:10,885] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M19_featureCounts.out [2026-09-09 11:43:10,886] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M19_featureCounts.out [2026-09-09 11:43:10,886] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M19_featureCounts.out [2026-09-09 11:43:10,893] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M19_featureCounts.out [2026-09-09 11:43:10,894] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M19_featureCounts.out [2026-09-09 11:43:10,894] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M19_featureCounts.out [2026-09-09 11:43:10,894] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M19_featureCounts.out [2026-09-09 11:43:10,894] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M19_featureCounts.out [2026-09-09 11:43:10,894] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M19_featureCounts.out [2026-09-09 11:43:10,894] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M19_featureCounts.out [2026-09-09 11:43:11,833] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M19_featureCounts.out [2026-09-09 11:43:11,837] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M19_featureCounts.out [2026-09-09 11:43:11,837] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M19_featureCounts.out [2026-09-09 11:43:11,837] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M19_featureCounts.out [2026-09-09 11:43:11,844] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M19_featureCounts.out [2026-09-09 11:43:11,844] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M19_featureCounts.out [2026-09-09 11:43:11,844] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M19_featureCounts.out [2026-09-09 11:43:11,845] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M19_featureCounts.out [2026-09-09 11:43:11,845] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M19_featureCounts.out [2026-09-09 11:43:11,845] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M19_featureCounts.out [2026-09-09 11:43:11,845] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M19_featureCounts.out [2026-09-09 11:43:12,706] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M19_metrics [2026-09-09 11:43:12,709] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M19_metrics [2026-09-09 11:43:12,714] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M19_metrics [2026-09-09 11:43:12,765] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_9_1.fq.gz [2026-09-09 11:43:12,766] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_9_2.fq.gz [2026-09-09 11:43:12,821] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M3_primary_unique.bam [2026-09-09 11:43:12,891] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M3_SJ.out.tab [2026-09-09 11:43:12,896] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M3_SJ.out.tab [2026-09-09 11:43:12,896] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M3_SJ.out.tab [2026-09-09 11:43:12,897] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M3_SJ.out.tab [2026-09-09 11:43:12,904] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G213_M3_SJ.out.tab [2026-09-09 11:43:12,904] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M3_SJ.out.tab [2026-09-09 11:43:12,904] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M3_SJ.out.tab [2026-09-09 11:43:12,904] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M3_SJ.out.tab [2026-09-09 11:43:12,904] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M3_SJ.out.tab [2026-09-09 11:43:12,904] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M3_SJ.out.tab [2026-09-09 11:43:12,904] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M3_SJ.out.tab [2026-09-09 11:43:12,904] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M3_SJ.out.tab [2026-09-09 11:43:12,904] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G213_M3_SJ.out.tab [2026-09-09 11:43:12,904] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G213_M3_SJ.out.tab [2026-09-09 11:43:14,678] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M3_primary_unique.bam.bai [2026-09-09 11:43:15,206] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M3_marked_dup_metrics.txt [2026-09-09 11:43:15,210] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M3_marked_dup_metrics.txt [2026-09-09 11:43:15,211] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M3_marked_dup_metrics.txt [2026-09-09 11:43:15,211] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M3_marked_dup_metrics.txt [2026-09-09 11:43:15,217] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M3_marked_dup_metrics.txt [2026-09-09 11:43:15,262] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M3_metrics [2026-09-09 11:43:15,268] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M3_metrics [2026-09-09 11:43:15,268] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M3_metrics [2026-09-09 11:43:15,269] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M3_metrics [2026-09-09 11:43:15,278] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M3_metrics [2026-09-09 11:43:15,316] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M3_hist.pdf [2026-09-09 11:43:15,342] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M3_featureCounts.out [2026-09-09 11:43:15,346] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M3_featureCounts.out [2026-09-09 11:43:15,346] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M3_featureCounts.out [2026-09-09 11:43:15,346] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M3_featureCounts.out [2026-09-09 11:43:15,352] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M3_featureCounts.out [2026-09-09 11:43:15,352] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M3_featureCounts.out [2026-09-09 11:43:15,352] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M3_featureCounts.out [2026-09-09 11:43:15,352] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M3_featureCounts.out [2026-09-09 11:43:15,352] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M3_featureCounts.out [2026-09-09 11:43:15,352] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M3_featureCounts.out [2026-09-09 11:43:15,352] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M3_featureCounts.out [2026-09-09 11:43:16,287] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M3_featureCounts.out [2026-09-09 11:43:16,291] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M3_featureCounts.out [2026-09-09 11:43:16,291] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M3_featureCounts.out [2026-09-09 11:43:16,291] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M3_featureCounts.out [2026-09-09 11:43:16,296] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M3_featureCounts.out [2026-09-09 11:43:16,296] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M3_featureCounts.out [2026-09-09 11:43:16,296] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M3_featureCounts.out [2026-09-09 11:43:16,296] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M3_featureCounts.out [2026-09-09 11:43:16,296] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M3_featureCounts.out [2026-09-09 11:43:16,296] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M3_featureCounts.out [2026-09-09 11:43:16,296] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M3_featureCounts.out [2026-09-09 11:43:17,191] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M3_metrics [2026-09-09 11:43:17,194] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M3_metrics [2026-09-09 11:43:17,199] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M3_metrics [2026-09-09 11:43:17,247] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_22_1.fq.gz [2026-09-09 11:43:17,248] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_22_2.fq.gz [2026-09-09 11:43:17,332] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M23_primary_unique.bam.bai [2026-09-09 11:43:17,363] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M23_SJ.out.tab [2026-09-09 11:43:17,367] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M23_SJ.out.tab [2026-09-09 11:43:17,367] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M23_SJ.out.tab [2026-09-09 11:43:17,367] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M23_SJ.out.tab [2026-09-09 11:43:17,372] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G213_M23_SJ.out.tab [2026-09-09 11:43:17,373] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M23_SJ.out.tab [2026-09-09 11:43:17,373] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M23_SJ.out.tab [2026-09-09 11:43:17,373] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M23_SJ.out.tab [2026-09-09 11:43:17,373] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M23_SJ.out.tab [2026-09-09 11:43:17,373] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M23_SJ.out.tab [2026-09-09 11:43:17,373] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M23_SJ.out.tab [2026-09-09 11:43:17,373] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M23_SJ.out.tab [2026-09-09 11:43:17,373] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G213_M23_SJ.out.tab [2026-09-09 11:43:17,373] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G213_M23_SJ.out.tab [2026-09-09 11:43:19,548] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M23_primary_unique.bam [2026-09-09 11:43:19,620] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M23_marked_dup_metrics.txt [2026-09-09 11:43:19,624] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M23_marked_dup_metrics.txt [2026-09-09 11:43:19,625] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M23_marked_dup_metrics.txt [2026-09-09 11:43:19,625] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M23_marked_dup_metrics.txt [2026-09-09 11:43:19,631] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M23_marked_dup_metrics.txt [2026-09-09 11:43:19,654] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M23_hist.pdf [2026-09-09 11:43:19,673] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M23_metrics [2026-09-09 11:43:19,677] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M23_metrics [2026-09-09 11:43:19,677] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M23_metrics [2026-09-09 11:43:19,677] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M23_metrics [2026-09-09 11:43:19,684] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M23_metrics [2026-09-09 11:43:19,755] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M23_featureCounts.out [2026-09-09 11:43:19,760] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M23_featureCounts.out [2026-09-09 11:43:19,760] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M23_featureCounts.out [2026-09-09 11:43:19,760] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M23_featureCounts.out [2026-09-09 11:43:19,767] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M23_featureCounts.out [2026-09-09 11:43:19,767] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M23_featureCounts.out [2026-09-09 11:43:19,767] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M23_featureCounts.out [2026-09-09 11:43:19,767] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M23_featureCounts.out [2026-09-09 11:43:19,767] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M23_featureCounts.out [2026-09-09 11:43:19,767] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M23_featureCounts.out [2026-09-09 11:43:19,767] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M23_featureCounts.out [2026-09-09 11:43:20,661] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M23_featureCounts.out [2026-09-09 11:43:20,665] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M23_featureCounts.out [2026-09-09 11:43:20,666] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M23_featureCounts.out [2026-09-09 11:43:20,666] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M23_featureCounts.out [2026-09-09 11:43:20,673] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M23_featureCounts.out [2026-09-09 11:43:20,673] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M23_featureCounts.out [2026-09-09 11:43:20,673] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M23_featureCounts.out [2026-09-09 11:43:20,673] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M23_featureCounts.out [2026-09-09 11:43:20,673] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M23_featureCounts.out [2026-09-09 11:43:20,673] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M23_featureCounts.out [2026-09-09 11:43:20,673] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M23_featureCounts.out [2026-09-09 11:43:21,586] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M23_metrics [2026-09-09 11:43:21,589] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M23_metrics [2026-09-09 11:43:21,596] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M23_metrics [2026-09-09 11:43:21,659] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_4_1.fq.gz [2026-09-09 11:43:21,660] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_4_2.fq.gz [2026-09-09 11:43:21,690] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M7_primary_unique.bam [2026-09-09 11:43:21,792] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M7_primary_unique.bam.bai [2026-09-09 11:43:21,825] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M7_SJ.out.tab [2026-09-09 11:43:21,828] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M7_SJ.out.tab [2026-09-09 11:43:21,828] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M7_SJ.out.tab [2026-09-09 11:43:21,828] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M7_SJ.out.tab [2026-09-09 11:43:21,834] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G213_M7_SJ.out.tab [2026-09-09 11:43:21,834] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M7_SJ.out.tab [2026-09-09 11:43:21,834] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M7_SJ.out.tab [2026-09-09 11:43:21,834] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M7_SJ.out.tab [2026-09-09 11:43:21,834] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M7_SJ.out.tab [2026-09-09 11:43:21,834] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M7_SJ.out.tab [2026-09-09 11:43:21,834] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M7_SJ.out.tab [2026-09-09 11:43:21,834] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M7_SJ.out.tab [2026-09-09 11:43:21,834] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G213_M7_SJ.out.tab [2026-09-09 11:43:21,835] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G213_M7_SJ.out.tab [2026-09-09 11:43:23,950] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M7_marked_dup_metrics.txt [2026-09-09 11:43:23,953] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M7_marked_dup_metrics.txt [2026-09-09 11:43:23,954] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M7_marked_dup_metrics.txt [2026-09-09 11:43:23,954] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M7_marked_dup_metrics.txt [2026-09-09 11:43:23,958] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M7_marked_dup_metrics.txt [2026-09-09 11:43:23,973] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M7_hist.pdf [2026-09-09 11:43:23,985] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M7_metrics [2026-09-09 11:43:23,988] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M7_metrics [2026-09-09 11:43:23,988] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M7_metrics [2026-09-09 11:43:23,988] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M7_metrics [2026-09-09 11:43:23,993] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M7_metrics [2026-09-09 11:43:24,141] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M7_featureCounts.out [2026-09-09 11:43:24,146] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M7_featureCounts.out [2026-09-09 11:43:24,146] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M7_featureCounts.out [2026-09-09 11:43:24,146] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M7_featureCounts.out [2026-09-09 11:43:24,154] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M7_featureCounts.out [2026-09-09 11:43:24,154] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M7_featureCounts.out [2026-09-09 11:43:24,154] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M7_featureCounts.out [2026-09-09 11:43:24,154] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M7_featureCounts.out [2026-09-09 11:43:24,154] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M7_featureCounts.out [2026-09-09 11:43:24,154] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M7_featureCounts.out [2026-09-09 11:43:24,154] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M7_featureCounts.out [2026-09-09 11:43:25,077] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M7_featureCounts.out [2026-09-09 11:43:25,081] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M7_featureCounts.out [2026-09-09 11:43:25,081] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M7_featureCounts.out [2026-09-09 11:43:25,081] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M7_featureCounts.out [2026-09-09 11:43:25,087] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M7_featureCounts.out [2026-09-09 11:43:25,087] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M7_featureCounts.out [2026-09-09 11:43:25,087] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M7_featureCounts.out [2026-09-09 11:43:25,087] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M7_featureCounts.out [2026-09-09 11:43:25,088] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M7_featureCounts.out [2026-09-09 11:43:25,088] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M7_featureCounts.out [2026-09-09 11:43:25,088] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M7_featureCounts.out [2026-09-09 11:43:25,981] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M7_metrics [2026-09-09 11:43:25,984] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M7_metrics [2026-09-09 11:43:25,989] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M7_metrics [2026-09-09 11:43:26,030] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_14_2.fq.gz [2026-09-09 11:43:26,031] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_14_1.fq.gz [2026-09-09 11:43:26,074] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M21_primary_unique.bam [2026-09-09 11:43:26,118] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M21_SJ.out.tab [2026-09-09 11:43:26,122] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M21_SJ.out.tab [2026-09-09 11:43:26,123] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M21_SJ.out.tab [2026-09-09 11:43:26,123] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M21_SJ.out.tab [2026-09-09 11:43:26,129] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G213_M21_SJ.out.tab [2026-09-09 11:43:26,129] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M21_SJ.out.tab [2026-09-09 11:43:26,129] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M21_SJ.out.tab [2026-09-09 11:43:26,129] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M21_SJ.out.tab [2026-09-09 11:43:26,129] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M21_SJ.out.tab [2026-09-09 11:43:26,129] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M21_SJ.out.tab [2026-09-09 11:43:26,130] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M21_SJ.out.tab [2026-09-09 11:43:26,130] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M21_SJ.out.tab [2026-09-09 11:43:26,130] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G213_M21_SJ.out.tab [2026-09-09 11:43:26,130] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G213_M21_SJ.out.tab [2026-09-09 11:43:28,413] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M21_primary_unique.bam.bai [2026-09-09 11:43:28,447] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M21_marked_dup_metrics.txt [2026-09-09 11:43:28,451] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M21_marked_dup_metrics.txt [2026-09-09 11:43:28,451] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M21_marked_dup_metrics.txt [2026-09-09 11:43:28,452] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M21_marked_dup_metrics.txt [2026-09-09 11:43:28,460] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M21_marked_dup_metrics.txt [2026-09-09 11:43:28,482] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M21_hist.pdf [2026-09-09 11:43:28,501] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M21_metrics [2026-09-09 11:43:28,504] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M21_metrics [2026-09-09 11:43:28,504] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M21_metrics [2026-09-09 11:43:28,504] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M21_metrics [2026-09-09 11:43:28,511] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M21_metrics [2026-09-09 11:43:28,605] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M21_featureCounts.out [2026-09-09 11:43:28,608] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M21_featureCounts.out [2026-09-09 11:43:28,608] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M21_featureCounts.out [2026-09-09 11:43:28,608] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M21_featureCounts.out [2026-09-09 11:43:28,613] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M21_featureCounts.out [2026-09-09 11:43:28,613] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M21_featureCounts.out [2026-09-09 11:43:28,613] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M21_featureCounts.out [2026-09-09 11:43:28,613] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M21_featureCounts.out [2026-09-09 11:43:28,613] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M21_featureCounts.out [2026-09-09 11:43:28,613] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M21_featureCounts.out [2026-09-09 11:43:28,613] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M21_featureCounts.out [2026-09-09 11:43:29,567] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M21_featureCounts.out [2026-09-09 11:43:29,570] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M21_featureCounts.out [2026-09-09 11:43:29,570] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M21_featureCounts.out [2026-09-09 11:43:29,570] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M21_featureCounts.out [2026-09-09 11:43:29,575] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M21_featureCounts.out [2026-09-09 11:43:29,575] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M21_featureCounts.out [2026-09-09 11:43:29,576] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M21_featureCounts.out [2026-09-09 11:43:29,576] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M21_featureCounts.out [2026-09-09 11:43:29,576] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M21_featureCounts.out [2026-09-09 11:43:29,576] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M21_featureCounts.out [2026-09-09 11:43:29,576] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M21_featureCounts.out [2026-09-09 11:43:30,473] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M21_metrics [2026-09-09 11:43:30,476] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M21_metrics [2026-09-09 11:43:30,484] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M21_metrics [2026-09-09 11:43:30,546] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_12_1.fq.gz [2026-09-09 11:43:30,547] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_12_2.fq.gz [2026-09-09 11:43:30,636] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M4_primary_unique.bam.bai [2026-09-09 11:43:30,689] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M4_primary_unique.bam [2026-09-09 11:43:30,744] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M4_SJ.out.tab [2026-09-09 11:43:30,747] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M4_SJ.out.tab [2026-09-09 11:43:30,747] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M4_SJ.out.tab [2026-09-09 11:43:30,747] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M4_SJ.out.tab [2026-09-09 11:43:30,753] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G213_M4_SJ.out.tab [2026-09-09 11:43:30,753] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M4_SJ.out.tab [2026-09-09 11:43:30,753] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M4_SJ.out.tab [2026-09-09 11:43:30,753] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M4_SJ.out.tab [2026-09-09 11:43:30,753] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M4_SJ.out.tab [2026-09-09 11:43:30,753] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M4_SJ.out.tab [2026-09-09 11:43:30,753] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M4_SJ.out.tab [2026-09-09 11:43:30,753] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M4_SJ.out.tab [2026-09-09 11:43:30,753] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G213_M4_SJ.out.tab [2026-09-09 11:43:30,753] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G213_M4_SJ.out.tab [2026-09-09 11:43:32,781] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M4_marked_dup_metrics.txt [2026-09-09 11:43:32,785] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M4_marked_dup_metrics.txt [2026-09-09 11:43:32,785] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M4_marked_dup_metrics.txt [2026-09-09 11:43:32,785] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M4_marked_dup_metrics.txt [2026-09-09 11:43:32,791] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M4_marked_dup_metrics.txt [2026-09-09 11:43:32,814] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M4_hist.pdf [2026-09-09 11:43:32,834] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M4_metrics [2026-09-09 11:43:32,838] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M4_metrics [2026-09-09 11:43:32,838] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M4_metrics [2026-09-09 11:43:32,838] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M4_metrics [2026-09-09 11:43:32,847] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M4_metrics [2026-09-09 11:43:32,934] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M4_featureCounts.out [2026-09-09 11:43:32,938] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M4_featureCounts.out [2026-09-09 11:43:32,939] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M4_featureCounts.out [2026-09-09 11:43:32,939] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M4_featureCounts.out [2026-09-09 11:43:32,947] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M4_featureCounts.out [2026-09-09 11:43:32,947] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M4_featureCounts.out [2026-09-09 11:43:32,947] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M4_featureCounts.out [2026-09-09 11:43:32,947] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M4_featureCounts.out [2026-09-09 11:43:32,947] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M4_featureCounts.out [2026-09-09 11:43:32,947] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M4_featureCounts.out [2026-09-09 11:43:32,947] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M4_featureCounts.out [2026-09-09 11:43:33,929] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M4_featureCounts.out [2026-09-09 11:43:33,934] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M4_featureCounts.out [2026-09-09 11:43:33,935] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M4_featureCounts.out [2026-09-09 11:43:33,935] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M4_featureCounts.out [2026-09-09 11:43:33,941] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M4_featureCounts.out [2026-09-09 11:43:33,941] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M4_featureCounts.out [2026-09-09 11:43:33,941] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M4_featureCounts.out [2026-09-09 11:43:33,941] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M4_featureCounts.out [2026-09-09 11:43:33,942] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M4_featureCounts.out [2026-09-09 11:43:33,942] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M4_featureCounts.out [2026-09-09 11:43:33,942] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M4_featureCounts.out [2026-09-09 11:43:34,845] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M4_metrics [2026-09-09 11:43:34,850] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M4_metrics [2026-09-09 11:43:34,858] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M4_metrics [2026-09-09 11:43:34,912] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_10_2.fq.gz [2026-09-09 11:43:34,913] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_10_1.fq.gz [2026-09-09 11:43:34,970] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M8_SJ.out.tab [2026-09-09 11:43:34,975] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M8_SJ.out.tab [2026-09-09 11:43:34,975] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M8_SJ.out.tab [2026-09-09 11:43:34,975] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M8_SJ.out.tab [2026-09-09 11:43:34,983] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G213_M8_SJ.out.tab [2026-09-09 11:43:34,984] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M8_SJ.out.tab [2026-09-09 11:43:34,984] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M8_SJ.out.tab [2026-09-09 11:43:34,984] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M8_SJ.out.tab [2026-09-09 11:43:34,984] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M8_SJ.out.tab [2026-09-09 11:43:34,984] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M8_SJ.out.tab [2026-09-09 11:43:34,984] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M8_SJ.out.tab [2026-09-09 11:43:34,984] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M8_SJ.out.tab [2026-09-09 11:43:34,984] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G213_M8_SJ.out.tab [2026-09-09 11:43:34,984] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G213_M8_SJ.out.tab [2026-09-09 11:43:36,910] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M8_primary_unique.bam [2026-09-09 11:43:36,958] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M8_primary_unique.bam.bai [2026-09-09 11:43:36,980] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M8_marked_dup_metrics.txt [2026-09-09 11:43:36,985] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M8_marked_dup_metrics.txt [2026-09-09 11:43:36,986] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M8_marked_dup_metrics.txt [2026-09-09 11:43:36,986] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M8_marked_dup_metrics.txt [2026-09-09 11:43:36,995] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M8_marked_dup_metrics.txt [2026-09-09 11:43:37,025] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M8_hist.pdf [2026-09-09 11:43:37,041] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M8_metrics [2026-09-09 11:43:37,044] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M8_metrics [2026-09-09 11:43:37,044] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M8_metrics [2026-09-09 11:43:37,044] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M8_metrics [2026-09-09 11:43:37,049] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M8_metrics [2026-09-09 11:43:37,103] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M8_featureCounts.out [2026-09-09 11:43:37,107] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M8_featureCounts.out [2026-09-09 11:43:37,107] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M8_featureCounts.out [2026-09-09 11:43:37,107] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M8_featureCounts.out [2026-09-09 11:43:37,113] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M8_featureCounts.out [2026-09-09 11:43:37,113] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M8_featureCounts.out [2026-09-09 11:43:37,113] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M8_featureCounts.out [2026-09-09 11:43:37,113] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M8_featureCounts.out [2026-09-09 11:43:37,113] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M8_featureCounts.out [2026-09-09 11:43:37,113] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M8_featureCounts.out [2026-09-09 11:43:37,113] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M8_featureCounts.out [2026-09-09 11:43:38,031] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M8_featureCounts.out [2026-09-09 11:43:38,035] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M8_featureCounts.out [2026-09-09 11:43:38,035] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M8_featureCounts.out [2026-09-09 11:43:38,035] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M8_featureCounts.out [2026-09-09 11:43:38,041] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M8_featureCounts.out [2026-09-09 11:43:38,041] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M8_featureCounts.out [2026-09-09 11:43:38,041] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M8_featureCounts.out [2026-09-09 11:43:38,041] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M8_featureCounts.out [2026-09-09 11:43:38,041] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M8_featureCounts.out [2026-09-09 11:43:38,041] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M8_featureCounts.out [2026-09-09 11:43:38,041] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M8_featureCounts.out [2026-09-09 11:43:38,930] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M8_metrics [2026-09-09 11:43:38,933] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M8_metrics [2026-09-09 11:43:38,938] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M8_metrics [2026-09-09 11:43:39,000] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_6_1.fq.gz [2026-09-09 11:43:39,000] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_6_2.fq.gz [2026-09-09 11:43:39,060] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M14_SJ.out.tab [2026-09-09 11:43:39,064] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M14_SJ.out.tab [2026-09-09 11:43:39,065] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M14_SJ.out.tab [2026-09-09 11:43:39,065] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M14_SJ.out.tab [2026-09-09 11:43:39,070] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G213_M14_SJ.out.tab [2026-09-09 11:43:39,071] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M14_SJ.out.tab [2026-09-09 11:43:39,071] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M14_SJ.out.tab [2026-09-09 11:43:39,071] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M14_SJ.out.tab [2026-09-09 11:43:39,071] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M14_SJ.out.tab [2026-09-09 11:43:39,071] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M14_SJ.out.tab [2026-09-09 11:43:39,071] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M14_SJ.out.tab [2026-09-09 11:43:39,071] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M14_SJ.out.tab [2026-09-09 11:43:39,071] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G213_M14_SJ.out.tab [2026-09-09 11:43:39,071] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G213_M14_SJ.out.tab [2026-09-09 11:43:41,441] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M14_primary_unique.bam.bai [2026-09-09 11:43:41,441] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M14_primary_unique.bam [2026-09-09 11:43:42,046] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M14_marked_dup_metrics.txt [2026-09-09 11:43:42,050] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M14_marked_dup_metrics.txt [2026-09-09 11:43:42,051] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M14_marked_dup_metrics.txt [2026-09-09 11:43:42,051] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M14_marked_dup_metrics.txt [2026-09-09 11:43:42,059] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M14_marked_dup_metrics.txt [2026-09-09 11:43:42,079] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M14_hist.pdf [2026-09-09 11:43:42,099] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M14_metrics [2026-09-09 11:43:42,102] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M14_metrics [2026-09-09 11:43:42,102] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M14_metrics [2026-09-09 11:43:42,102] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M14_metrics [2026-09-09 11:43:42,107] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M14_metrics [2026-09-09 11:43:42,202] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M14_featureCounts.out [2026-09-09 11:43:42,207] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M14_featureCounts.out [2026-09-09 11:43:42,207] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M14_featureCounts.out [2026-09-09 11:43:42,208] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M14_featureCounts.out [2026-09-09 11:43:42,215] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M14_featureCounts.out [2026-09-09 11:43:42,215] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M14_featureCounts.out [2026-09-09 11:43:42,215] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M14_featureCounts.out [2026-09-09 11:43:42,215] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M14_featureCounts.out [2026-09-09 11:43:42,215] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M14_featureCounts.out [2026-09-09 11:43:42,215] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M14_featureCounts.out [2026-09-09 11:43:42,215] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M14_featureCounts.out [2026-09-09 11:43:43,218] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M14_featureCounts.out [2026-09-09 11:43:43,223] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M14_featureCounts.out [2026-09-09 11:43:43,224] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M14_featureCounts.out [2026-09-09 11:43:43,224] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M14_featureCounts.out [2026-09-09 11:43:43,230] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M14_featureCounts.out [2026-09-09 11:43:43,230] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M14_featureCounts.out [2026-09-09 11:43:43,230] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M14_featureCounts.out [2026-09-09 11:43:43,230] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M14_featureCounts.out [2026-09-09 11:43:43,231] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M14_featureCounts.out [2026-09-09 11:43:43,231] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M14_featureCounts.out [2026-09-09 11:43:43,231] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M14_featureCounts.out [2026-09-09 11:43:44,118] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M14_metrics [2026-09-09 11:43:44,123] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M14_metrics [2026-09-09 11:43:44,127] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M14_metrics [2026-09-09 11:43:44,181] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_17_2.fq.gz [2026-09-09 11:43:44,182] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_17_1.fq.gz [2026-09-09 11:43:44,224] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M5_primary_unique.bam [2026-09-09 11:43:44,331] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M5_SJ.out.tab [2026-09-09 11:43:44,336] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M5_SJ.out.tab [2026-09-09 11:43:44,337] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M5_SJ.out.tab [2026-09-09 11:43:44,337] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M5_SJ.out.tab [2026-09-09 11:43:44,345] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G213_M5_SJ.out.tab [2026-09-09 11:43:44,345] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M5_SJ.out.tab [2026-09-09 11:43:44,345] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M5_SJ.out.tab [2026-09-09 11:43:44,345] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M5_SJ.out.tab [2026-09-09 11:43:44,345] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M5_SJ.out.tab [2026-09-09 11:43:44,345] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M5_SJ.out.tab [2026-09-09 11:43:44,345] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M5_SJ.out.tab [2026-09-09 11:43:44,345] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M5_SJ.out.tab [2026-09-09 11:43:44,346] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G213_M5_SJ.out.tab [2026-09-09 11:43:44,346] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G213_M5_SJ.out.tab [2026-09-09 11:43:46,369] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M5_primary_unique.bam.bai [2026-09-09 11:43:46,407] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M5_marked_dup_metrics.txt [2026-09-09 11:43:46,411] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M5_marked_dup_metrics.txt [2026-09-09 11:43:46,412] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M5_marked_dup_metrics.txt [2026-09-09 11:43:46,412] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M5_marked_dup_metrics.txt [2026-09-09 11:43:46,417] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M5_marked_dup_metrics.txt [2026-09-09 11:43:46,438] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M5_hist.pdf [2026-09-09 11:43:46,453] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M5_metrics [2026-09-09 11:43:46,457] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M5_metrics [2026-09-09 11:43:46,509] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M5_metrics [2026-09-09 11:43:46,510] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M5_metrics [2026-09-09 11:43:46,517] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M5_metrics [2026-09-09 11:43:46,624] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M5_featureCounts.out [2026-09-09 11:43:46,629] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M5_featureCounts.out [2026-09-09 11:43:46,629] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M5_featureCounts.out [2026-09-09 11:43:46,629] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M5_featureCounts.out [2026-09-09 11:43:46,637] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M5_featureCounts.out [2026-09-09 11:43:46,637] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M5_featureCounts.out [2026-09-09 11:43:46,637] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M5_featureCounts.out [2026-09-09 11:43:46,637] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M5_featureCounts.out [2026-09-09 11:43:46,637] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M5_featureCounts.out [2026-09-09 11:43:46,637] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M5_featureCounts.out [2026-09-09 11:43:46,637] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M5_featureCounts.out [2026-09-09 11:43:47,586] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M5_featureCounts.out [2026-09-09 11:43:47,591] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M5_featureCounts.out [2026-09-09 11:43:47,591] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M5_featureCounts.out [2026-09-09 11:43:47,591] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M5_featureCounts.out [2026-09-09 11:43:47,600] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M5_featureCounts.out [2026-09-09 11:43:47,600] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M5_featureCounts.out [2026-09-09 11:43:47,600] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M5_featureCounts.out [2026-09-09 11:43:47,600] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M5_featureCounts.out [2026-09-09 11:43:47,600] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M5_featureCounts.out [2026-09-09 11:43:47,600] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M5_featureCounts.out [2026-09-09 11:43:47,600] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M5_featureCounts.out [2026-09-09 11:43:48,516] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M5_metrics [2026-09-09 11:43:48,522] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M5_metrics [2026-09-09 11:43:48,530] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M5_metrics [2026-09-09 11:43:48,586] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_23_1.fq.gz [2026-09-09 11:43:48,587] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_23_2.fq.gz [2026-09-09 11:43:48,631] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M12_primary_unique.bam.bai [2026-09-09 11:43:48,633] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M12_primary_unique.bam [2026-09-09 11:43:48,678] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M12_SJ.out.tab [2026-09-09 11:43:48,681] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M12_SJ.out.tab [2026-09-09 11:43:48,681] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M12_SJ.out.tab [2026-09-09 11:43:48,681] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M12_SJ.out.tab [2026-09-09 11:43:48,687] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G213_M12_SJ.out.tab [2026-09-09 11:43:48,687] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M12_SJ.out.tab [2026-09-09 11:43:48,687] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M12_SJ.out.tab [2026-09-09 11:43:48,687] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M12_SJ.out.tab [2026-09-09 11:43:48,687] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M12_SJ.out.tab [2026-09-09 11:43:48,687] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M12_SJ.out.tab [2026-09-09 11:43:48,687] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M12_SJ.out.tab [2026-09-09 11:43:48,687] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M12_SJ.out.tab [2026-09-09 11:43:48,687] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G213_M12_SJ.out.tab [2026-09-09 11:43:48,687] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G213_M12_SJ.out.tab [2026-09-09 11:43:51,029] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M12_marked_dup_metrics.txt [2026-09-09 11:43:51,034] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M12_marked_dup_metrics.txt [2026-09-09 11:43:51,035] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M12_marked_dup_metrics.txt [2026-09-09 11:43:51,035] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M12_marked_dup_metrics.txt [2026-09-09 11:43:51,042] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M12_marked_dup_metrics.txt [2026-09-09 11:43:51,060] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M12_hist.pdf [2026-09-09 11:43:51,086] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M12_metrics [2026-09-09 11:43:51,091] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M12_metrics [2026-09-09 11:43:51,091] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M12_metrics [2026-09-09 11:43:51,091] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M12_metrics [2026-09-09 11:43:51,098] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M12_metrics [2026-09-09 11:43:51,195] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M12_featureCounts.out [2026-09-09 11:43:51,201] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M12_featureCounts.out [2026-09-09 11:43:51,202] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M12_featureCounts.out [2026-09-09 11:43:51,202] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M12_featureCounts.out [2026-09-09 11:43:51,210] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M12_featureCounts.out [2026-09-09 11:43:51,210] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M12_featureCounts.out [2026-09-09 11:43:51,210] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M12_featureCounts.out [2026-09-09 11:43:51,210] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M12_featureCounts.out [2026-09-09 11:43:51,210] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M12_featureCounts.out [2026-09-09 11:43:51,210] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M12_featureCounts.out [2026-09-09 11:43:51,211] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M12_featureCounts.out [2026-09-09 11:43:52,178] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M12_featureCounts.out [2026-09-09 11:43:52,182] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M12_featureCounts.out [2026-09-09 11:43:52,235] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M12_featureCounts.out [2026-09-09 11:43:52,235] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M12_featureCounts.out [2026-09-09 11:43:52,243] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M12_featureCounts.out [2026-09-09 11:43:52,243] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M12_featureCounts.out [2026-09-09 11:43:52,244] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M12_featureCounts.out [2026-09-09 11:43:52,244] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M12_featureCounts.out [2026-09-09 11:43:52,244] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M12_featureCounts.out [2026-09-09 11:43:52,244] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M12_featureCounts.out [2026-09-09 11:43:52,244] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M12_featureCounts.out [2026-09-09 11:43:53,130] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M12_metrics [2026-09-09 11:43:53,134] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M12_metrics [2026-09-09 11:43:53,143] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M12_metrics [2026-09-09 11:43:53,203] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_13_2.fq.gz [2026-09-09 11:43:53,204] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_13_1.fq.gz [2026-09-09 11:43:53,231] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M9_primary_unique.bam.bai [2026-09-09 11:43:53,381] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M9_SJ.out.tab [2026-09-09 11:43:53,386] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M9_SJ.out.tab [2026-09-09 11:43:53,387] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M9_SJ.out.tab [2026-09-09 11:43:53,387] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M9_SJ.out.tab [2026-09-09 11:43:53,396] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G213_M9_SJ.out.tab [2026-09-09 11:43:53,396] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M9_SJ.out.tab [2026-09-09 11:43:53,396] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M9_SJ.out.tab [2026-09-09 11:43:53,396] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M9_SJ.out.tab [2026-09-09 11:43:53,397] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M9_SJ.out.tab [2026-09-09 11:43:53,397] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M9_SJ.out.tab [2026-09-09 11:43:53,397] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M9_SJ.out.tab [2026-09-09 11:43:53,397] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M9_SJ.out.tab [2026-09-09 11:43:53,397] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G213_M9_SJ.out.tab [2026-09-09 11:43:53,397] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G213_M9_SJ.out.tab [2026-09-09 11:43:55,400] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M9_primary_unique.bam [2026-09-09 11:43:55,425] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M9_marked_dup_metrics.txt [2026-09-09 11:43:55,431] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M9_marked_dup_metrics.txt [2026-09-09 11:43:55,431] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M9_marked_dup_metrics.txt [2026-09-09 11:43:55,432] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M9_marked_dup_metrics.txt [2026-09-09 11:43:55,439] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M9_marked_dup_metrics.txt [2026-09-09 11:43:55,468] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M9_metrics [2026-09-09 11:43:55,470] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M9_metrics [2026-09-09 11:43:55,471] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M9_metrics [2026-09-09 11:43:55,471] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M9_metrics [2026-09-09 11:43:55,475] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M9_metrics [2026-09-09 11:43:55,505] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M9_hist.pdf [2026-09-09 11:43:55,563] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M9_featureCounts.out [2026-09-09 11:43:55,569] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M9_featureCounts.out [2026-09-09 11:43:55,569] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M9_featureCounts.out [2026-09-09 11:43:55,570] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M9_featureCounts.out [2026-09-09 11:43:55,578] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M9_featureCounts.out [2026-09-09 11:43:55,578] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M9_featureCounts.out [2026-09-09 11:43:55,578] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M9_featureCounts.out [2026-09-09 11:43:55,578] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M9_featureCounts.out [2026-09-09 11:43:55,578] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M9_featureCounts.out [2026-09-09 11:43:55,579] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M9_featureCounts.out [2026-09-09 11:43:55,579] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M9_featureCounts.out [2026-09-09 11:43:56,537] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M9_featureCounts.out [2026-09-09 11:43:56,541] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M9_featureCounts.out [2026-09-09 11:43:56,541] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M9_featureCounts.out [2026-09-09 11:43:56,541] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M9_featureCounts.out [2026-09-09 11:43:56,548] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M9_featureCounts.out [2026-09-09 11:43:56,548] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M9_featureCounts.out [2026-09-09 11:43:56,548] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M9_featureCounts.out [2026-09-09 11:43:56,548] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M9_featureCounts.out [2026-09-09 11:43:56,548] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M9_featureCounts.out [2026-09-09 11:43:56,548] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M9_featureCounts.out [2026-09-09 11:43:56,548] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M9_featureCounts.out [2026-09-09 11:43:57,441] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M9_metrics [2026-09-09 11:43:57,444] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M9_metrics [2026-09-09 11:43:57,501] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M9_metrics [2026-09-09 11:43:57,558] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_24_1.fq.gz [2026-09-09 11:43:57,559] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_24_2.fq.gz [2026-09-09 11:43:57,658] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M24_SJ.out.tab [2026-09-09 11:43:57,662] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M24_SJ.out.tab [2026-09-09 11:43:57,663] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M24_SJ.out.tab [2026-09-09 11:43:57,663] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M24_SJ.out.tab [2026-09-09 11:43:57,670] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G213_M24_SJ.out.tab [2026-09-09 11:43:57,670] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M24_SJ.out.tab [2026-09-09 11:43:57,670] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M24_SJ.out.tab [2026-09-09 11:43:57,670] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M24_SJ.out.tab [2026-09-09 11:43:57,670] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M24_SJ.out.tab [2026-09-09 11:43:57,670] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M24_SJ.out.tab [2026-09-09 11:43:57,670] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M24_SJ.out.tab [2026-09-09 11:43:57,670] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M24_SJ.out.tab [2026-09-09 11:43:57,670] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G213_M24_SJ.out.tab [2026-09-09 11:43:57,670] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G213_M24_SJ.out.tab [2026-09-09 11:43:59,746] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M24_primary_unique.bam.bai [2026-09-09 11:43:59,747] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M24_primary_unique.bam [2026-09-09 11:43:59,822] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M24_marked_dup_metrics.txt [2026-09-09 11:43:59,826] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M24_marked_dup_metrics.txt [2026-09-09 11:43:59,826] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M24_marked_dup_metrics.txt [2026-09-09 11:43:59,827] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M24_marked_dup_metrics.txt [2026-09-09 11:43:59,834] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M24_marked_dup_metrics.txt [2026-09-09 11:43:59,873] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M24_metrics [2026-09-09 11:43:59,877] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M24_metrics [2026-09-09 11:43:59,877] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M24_metrics [2026-09-09 11:43:59,877] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M24_metrics [2026-09-09 11:43:59,884] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M24_metrics [2026-09-09 11:43:59,935] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M24_hist.pdf [2026-09-09 11:43:59,961] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M24_featureCounts.out [2026-09-09 11:43:59,964] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M24_featureCounts.out [2026-09-09 11:43:59,965] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M24_featureCounts.out [2026-09-09 11:43:59,965] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M24_featureCounts.out [2026-09-09 11:43:59,970] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M24_featureCounts.out [2026-09-09 11:43:59,970] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M24_featureCounts.out [2026-09-09 11:43:59,970] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M24_featureCounts.out [2026-09-09 11:43:59,970] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M24_featureCounts.out [2026-09-09 11:43:59,970] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M24_featureCounts.out [2026-09-09 11:43:59,971] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M24_featureCounts.out [2026-09-09 11:43:59,971] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M24_featureCounts.out [2026-09-09 11:44:00,884] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M24_featureCounts.out [2026-09-09 11:44:00,888] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M24_featureCounts.out [2026-09-09 11:44:00,888] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M24_featureCounts.out [2026-09-09 11:44:00,888] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M24_featureCounts.out [2026-09-09 11:44:00,896] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M24_featureCounts.out [2026-09-09 11:44:00,897] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M24_featureCounts.out [2026-09-09 11:44:00,897] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M24_featureCounts.out [2026-09-09 11:44:00,897] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M24_featureCounts.out [2026-09-09 11:44:00,897] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M24_featureCounts.out [2026-09-09 11:44:00,897] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M24_featureCounts.out [2026-09-09 11:44:00,897] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M24_featureCounts.out [2026-09-09 11:44:01,862] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M24_metrics [2026-09-09 11:44:01,865] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M24_metrics [2026-09-09 11:44:01,871] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M24_metrics [2026-09-09 11:44:01,934] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_21_1.fq.gz [2026-09-09 11:44:01,935] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_21_2.fq.gz [2026-09-09 11:44:02,045] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M6_primary_unique.bam [2026-09-09 11:44:02,046] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M6_primary_unique.bam.bai [2026-09-09 11:44:02,077] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M6_SJ.out.tab [2026-09-09 11:44:02,080] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M6_SJ.out.tab [2026-09-09 11:44:02,080] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M6_SJ.out.tab [2026-09-09 11:44:02,081] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M6_SJ.out.tab [2026-09-09 11:44:02,087] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G213_M6_SJ.out.tab [2026-09-09 11:44:02,087] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M6_SJ.out.tab [2026-09-09 11:44:02,087] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M6_SJ.out.tab [2026-09-09 11:44:02,087] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M6_SJ.out.tab [2026-09-09 11:44:02,087] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M6_SJ.out.tab [2026-09-09 11:44:02,087] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M6_SJ.out.tab [2026-09-09 11:44:02,087] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M6_SJ.out.tab [2026-09-09 11:44:02,087] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M6_SJ.out.tab [2026-09-09 11:44:02,087] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G213_M6_SJ.out.tab [2026-09-09 11:44:02,087] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G213_M6_SJ.out.tab [2026-09-09 11:44:04,036] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M6_marked_dup_metrics.txt [2026-09-09 11:44:04,039] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M6_marked_dup_metrics.txt [2026-09-09 11:44:04,040] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M6_marked_dup_metrics.txt [2026-09-09 11:44:04,040] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M6_marked_dup_metrics.txt [2026-09-09 11:44:04,048] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M6_marked_dup_metrics.txt [2026-09-09 11:44:04,087] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M6_metrics [2026-09-09 11:44:04,091] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M6_metrics [2026-09-09 11:44:04,091] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M6_metrics [2026-09-09 11:44:04,091] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M6_metrics [2026-09-09 11:44:04,097] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M6_metrics [2026-09-09 11:44:04,212] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M6_hist.pdf [2026-09-09 11:44:04,354] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M6_featureCounts.out [2026-09-09 11:44:04,357] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M6_featureCounts.out [2026-09-09 11:44:04,358] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M6_featureCounts.out [2026-09-09 11:44:04,358] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M6_featureCounts.out [2026-09-09 11:44:04,363] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M6_featureCounts.out [2026-09-09 11:44:04,363] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M6_featureCounts.out [2026-09-09 11:44:04,363] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M6_featureCounts.out [2026-09-09 11:44:04,363] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M6_featureCounts.out [2026-09-09 11:44:04,364] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M6_featureCounts.out [2026-09-09 11:44:04,364] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M6_featureCounts.out [2026-09-09 11:44:04,364] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M6_featureCounts.out [2026-09-09 11:44:05,337] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M6_featureCounts.out [2026-09-09 11:44:05,342] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M6_featureCounts.out [2026-09-09 11:44:05,342] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M6_featureCounts.out [2026-09-09 11:44:05,342] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M6_featureCounts.out [2026-09-09 11:44:05,350] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M6_featureCounts.out [2026-09-09 11:44:05,351] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M6_featureCounts.out [2026-09-09 11:44:05,351] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M6_featureCounts.out [2026-09-09 11:44:05,351] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M6_featureCounts.out [2026-09-09 11:44:05,351] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M6_featureCounts.out [2026-09-09 11:44:05,351] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M6_featureCounts.out [2026-09-09 11:44:05,351] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M6_featureCounts.out [2026-09-09 11:44:06,267] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M6_metrics [2026-09-09 11:44:06,269] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M6_metrics [2026-09-09 11:44:06,273] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M6_metrics [2026-09-09 11:44:06,338] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_20_1.fq.gz [2026-09-09 11:44:06,339] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_20_2.fq.gz [2026-09-09 11:44:06,395] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M22_SJ.out.tab [2026-09-09 11:44:06,399] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M22_SJ.out.tab [2026-09-09 11:44:06,400] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M22_SJ.out.tab [2026-09-09 11:44:06,400] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M22_SJ.out.tab [2026-09-09 11:44:06,407] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G213_M22_SJ.out.tab [2026-09-09 11:44:06,408] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M22_SJ.out.tab [2026-09-09 11:44:06,408] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M22_SJ.out.tab [2026-09-09 11:44:06,408] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M22_SJ.out.tab [2026-09-09 11:44:06,408] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M22_SJ.out.tab [2026-09-09 11:44:06,408] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M22_SJ.out.tab [2026-09-09 11:44:06,408] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M22_SJ.out.tab [2026-09-09 11:44:06,408] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M22_SJ.out.tab [2026-09-09 11:44:06,408] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G213_M22_SJ.out.tab [2026-09-09 11:44:06,408] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G213_M22_SJ.out.tab [2026-09-09 11:44:08,607] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M22_primary_unique.bam [2026-09-09 11:44:08,637] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M22_primary_unique.bam.bai [2026-09-09 11:44:08,698] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M22_marked_dup_metrics.txt [2026-09-09 11:44:08,700] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M22_marked_dup_metrics.txt [2026-09-09 11:44:08,701] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M22_marked_dup_metrics.txt [2026-09-09 11:44:08,701] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M22_marked_dup_metrics.txt [2026-09-09 11:44:08,707] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M22_marked_dup_metrics.txt [2026-09-09 11:44:08,743] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M22_metrics [2026-09-09 11:44:08,746] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M22_metrics [2026-09-09 11:44:08,747] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M22_metrics [2026-09-09 11:44:08,747] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M22_metrics [2026-09-09 11:44:08,752] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M22_metrics [2026-09-09 11:44:08,815] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M22_hist.pdf [2026-09-09 11:44:08,853] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M22_featureCounts.out [2026-09-09 11:44:08,857] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M22_featureCounts.out [2026-09-09 11:44:08,857] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M22_featureCounts.out [2026-09-09 11:44:08,857] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M22_featureCounts.out [2026-09-09 11:44:08,863] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M22_featureCounts.out [2026-09-09 11:44:08,863] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M22_featureCounts.out [2026-09-09 11:44:08,863] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M22_featureCounts.out [2026-09-09 11:44:08,863] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M22_featureCounts.out [2026-09-09 11:44:08,863] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M22_featureCounts.out [2026-09-09 11:44:08,863] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M22_featureCounts.out [2026-09-09 11:44:08,863] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M22_featureCounts.out [2026-09-09 11:44:09,870] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M22_featureCounts.out [2026-09-09 11:44:09,873] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M22_featureCounts.out [2026-09-09 11:44:09,873] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M22_featureCounts.out [2026-09-09 11:44:09,873] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M22_featureCounts.out [2026-09-09 11:44:09,878] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M22_featureCounts.out [2026-09-09 11:44:09,878] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M22_featureCounts.out [2026-09-09 11:44:09,878] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M22_featureCounts.out [2026-09-09 11:44:09,878] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M22_featureCounts.out [2026-09-09 11:44:09,878] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M22_featureCounts.out [2026-09-09 11:44:09,878] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M22_featureCounts.out [2026-09-09 11:44:09,878] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M22_featureCounts.out [2026-09-09 11:44:10,796] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M22_metrics [2026-09-09 11:44:10,799] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M22_metrics [2026-09-09 11:44:10,804] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M22_metrics [2026-09-09 11:44:10,870] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_16_2.fq.gz [2026-09-09 11:44:10,871] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_16_1.fq.gz [2026-09-09 11:44:10,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M17_primary_unique.bam.bai [2026-09-09 11:44:10,929] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M17_primary_unique.bam [2026-09-09 11:44:11,007] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M17_SJ.out.tab [2026-09-09 11:44:11,012] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M17_SJ.out.tab [2026-09-09 11:44:11,013] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M17_SJ.out.tab [2026-09-09 11:44:11,013] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M17_SJ.out.tab [2026-09-09 11:44:11,020] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G213_M17_SJ.out.tab [2026-09-09 11:44:11,021] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M17_SJ.out.tab [2026-09-09 11:44:11,021] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M17_SJ.out.tab [2026-09-09 11:44:11,021] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M17_SJ.out.tab [2026-09-09 11:44:11,021] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M17_SJ.out.tab [2026-09-09 11:44:11,021] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M17_SJ.out.tab [2026-09-09 11:44:11,021] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M17_SJ.out.tab [2026-09-09 11:44:11,021] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M17_SJ.out.tab [2026-09-09 11:44:11,021] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G213_M17_SJ.out.tab [2026-09-09 11:44:11,021] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G213_M17_SJ.out.tab [2026-09-09 11:44:13,229] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M17_marked_dup_metrics.txt [2026-09-09 11:44:13,232] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M17_marked_dup_metrics.txt [2026-09-09 11:44:13,233] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M17_marked_dup_metrics.txt [2026-09-09 11:44:13,233] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M17_marked_dup_metrics.txt [2026-09-09 11:44:13,238] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M17_marked_dup_metrics.txt [2026-09-09 11:44:13,255] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M17_hist.pdf [2026-09-09 11:44:13,282] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M17_metrics [2026-09-09 11:44:13,285] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M17_metrics [2026-09-09 11:44:13,285] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M17_metrics [2026-09-09 11:44:13,285] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M17_metrics [2026-09-09 11:44:13,293] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M17_metrics [2026-09-09 11:44:13,377] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M17_featureCounts.out [2026-09-09 11:44:13,380] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M17_featureCounts.out [2026-09-09 11:44:13,381] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M17_featureCounts.out [2026-09-09 11:44:13,381] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M17_featureCounts.out [2026-09-09 11:44:13,386] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M17_featureCounts.out [2026-09-09 11:44:13,386] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M17_featureCounts.out [2026-09-09 11:44:13,387] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M17_featureCounts.out [2026-09-09 11:44:13,387] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M17_featureCounts.out [2026-09-09 11:44:13,387] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M17_featureCounts.out [2026-09-09 11:44:13,387] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M17_featureCounts.out [2026-09-09 11:44:13,387] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M17_featureCounts.out [2026-09-09 11:44:14,330] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M17_featureCounts.out [2026-09-09 11:44:14,335] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M17_featureCounts.out [2026-09-09 11:44:14,336] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M17_featureCounts.out [2026-09-09 11:44:14,336] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M17_featureCounts.out [2026-09-09 11:44:14,345] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M17_featureCounts.out [2026-09-09 11:44:14,345] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M17_featureCounts.out [2026-09-09 11:44:14,345] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M17_featureCounts.out [2026-09-09 11:44:14,345] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M17_featureCounts.out [2026-09-09 11:44:14,345] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M17_featureCounts.out [2026-09-09 11:44:14,345] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M17_featureCounts.out [2026-09-09 11:44:14,345] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M17_featureCounts.out [2026-09-09 11:44:15,278] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M17_metrics [2026-09-09 11:44:15,281] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M17_metrics [2026-09-09 11:44:15,344] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M17_metrics [2026-09-09 11:44:15,401] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_7_2.fq.gz [2026-09-09 11:44:15,402] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_7_1.fq.gz [2026-09-09 11:44:15,451] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M15_primary_unique.bam.bai [2026-09-09 11:44:15,509] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M15_SJ.out.tab [2026-09-09 11:44:15,513] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M15_SJ.out.tab [2026-09-09 11:44:15,513] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M15_SJ.out.tab [2026-09-09 11:44:15,513] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M15_SJ.out.tab [2026-09-09 11:44:15,520] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G213_M15_SJ.out.tab [2026-09-09 11:44:15,520] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M15_SJ.out.tab [2026-09-09 11:44:15,520] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M15_SJ.out.tab [2026-09-09 11:44:15,520] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M15_SJ.out.tab [2026-09-09 11:44:15,520] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M15_SJ.out.tab [2026-09-09 11:44:15,520] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M15_SJ.out.tab [2026-09-09 11:44:15,520] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M15_SJ.out.tab [2026-09-09 11:44:15,521] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M15_SJ.out.tab [2026-09-09 11:44:15,521] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G213_M15_SJ.out.tab [2026-09-09 11:44:15,521] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G213_M15_SJ.out.tab [2026-09-09 11:44:17,649] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M15_primary_unique.bam [2026-09-09 11:44:17,671] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M15_marked_dup_metrics.txt [2026-09-09 11:44:17,677] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M15_marked_dup_metrics.txt [2026-09-09 11:44:17,678] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M15_marked_dup_metrics.txt [2026-09-09 11:44:17,678] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M15_marked_dup_metrics.txt [2026-09-09 11:44:17,688] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M15_marked_dup_metrics.txt [2026-09-09 11:44:17,723] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M15_hist.pdf [2026-09-09 11:44:17,743] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M15_metrics [2026-09-09 11:44:17,748] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M15_metrics [2026-09-09 11:44:17,749] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M15_metrics [2026-09-09 11:44:17,749] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M15_metrics [2026-09-09 11:44:17,759] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M15_metrics [2026-09-09 11:44:17,864] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M15_featureCounts.out [2026-09-09 11:44:17,868] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M15_featureCounts.out [2026-09-09 11:44:17,869] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M15_featureCounts.out [2026-09-09 11:44:17,869] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M15_featureCounts.out [2026-09-09 11:44:17,878] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M15_featureCounts.out [2026-09-09 11:44:17,878] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M15_featureCounts.out [2026-09-09 11:44:17,878] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M15_featureCounts.out [2026-09-09 11:44:17,878] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M15_featureCounts.out [2026-09-09 11:44:17,878] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M15_featureCounts.out [2026-09-09 11:44:17,878] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M15_featureCounts.out [2026-09-09 11:44:17,878] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M15_featureCounts.out [2026-09-09 11:44:18,851] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M15_featureCounts.out [2026-09-09 11:44:18,857] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M15_featureCounts.out [2026-09-09 11:44:18,858] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M15_featureCounts.out [2026-09-09 11:44:18,858] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M15_featureCounts.out [2026-09-09 11:44:18,870] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M15_featureCounts.out [2026-09-09 11:44:18,871] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M15_featureCounts.out [2026-09-09 11:44:18,871] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M15_featureCounts.out [2026-09-09 11:44:18,871] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M15_featureCounts.out [2026-09-09 11:44:18,871] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M15_featureCounts.out [2026-09-09 11:44:18,871] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M15_featureCounts.out [2026-09-09 11:44:18,871] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M15_featureCounts.out [2026-09-09 11:44:19,888] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M15_metrics [2026-09-09 11:44:19,895] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M15_metrics [2026-09-09 11:44:19,907] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M15_metrics [2026-09-09 11:44:20,008] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_15_1.fq.gz [2026-09-09 11:44:20,009] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_15_2.fq.gz [2026-09-09 11:44:20,109] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M10_primary_unique.bam.bai [2026-09-09 11:44:20,263] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M10_SJ.out.tab [2026-09-09 11:44:20,270] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M10_SJ.out.tab [2026-09-09 11:44:20,270] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M10_SJ.out.tab [2026-09-09 11:44:20,271] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M10_SJ.out.tab [2026-09-09 11:44:20,282] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G213_M10_SJ.out.tab [2026-09-09 11:44:20,282] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M10_SJ.out.tab [2026-09-09 11:44:20,335] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M10_SJ.out.tab [2026-09-09 11:44:20,336] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M10_SJ.out.tab [2026-09-09 11:44:20,336] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M10_SJ.out.tab [2026-09-09 11:44:20,336] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M10_SJ.out.tab [2026-09-09 11:44:20,336] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M10_SJ.out.tab [2026-09-09 11:44:20,336] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M10_SJ.out.tab [2026-09-09 11:44:20,336] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G213_M10_SJ.out.tab [2026-09-09 11:44:20,336] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G213_M10_SJ.out.tab [2026-09-09 11:44:22,769] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M10_primary_unique.bam [2026-09-09 11:44:22,795] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M10_marked_dup_metrics.txt [2026-09-09 11:44:22,801] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M10_marked_dup_metrics.txt [2026-09-09 11:44:22,801] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M10_marked_dup_metrics.txt [2026-09-09 11:44:22,802] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M10_marked_dup_metrics.txt [2026-09-09 11:44:22,810] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M10_marked_dup_metrics.txt [2026-09-09 11:44:22,830] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M10_hist.pdf [2026-09-09 11:44:22,848] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M10_metrics [2026-09-09 11:44:22,852] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M10_metrics [2026-09-09 11:44:22,852] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M10_metrics [2026-09-09 11:44:22,853] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M10_metrics [2026-09-09 11:44:22,859] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M10_metrics [2026-09-09 11:44:22,982] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M10_featureCounts.out [2026-09-09 11:44:22,986] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M10_featureCounts.out [2026-09-09 11:44:22,987] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M10_featureCounts.out [2026-09-09 11:44:22,987] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M10_featureCounts.out [2026-09-09 11:44:22,993] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M10_featureCounts.out [2026-09-09 11:44:22,993] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M10_featureCounts.out [2026-09-09 11:44:22,993] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M10_featureCounts.out [2026-09-09 11:44:22,993] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M10_featureCounts.out [2026-09-09 11:44:22,993] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M10_featureCounts.out [2026-09-09 11:44:22,993] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M10_featureCounts.out [2026-09-09 11:44:22,993] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M10_featureCounts.out [2026-09-09 11:44:23,929] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M10_featureCounts.out [2026-09-09 11:44:23,933] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M10_featureCounts.out [2026-09-09 11:44:23,934] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M10_featureCounts.out [2026-09-09 11:44:23,934] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M10_featureCounts.out [2026-09-09 11:44:23,941] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M10_featureCounts.out [2026-09-09 11:44:23,941] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M10_featureCounts.out [2026-09-09 11:44:23,941] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M10_featureCounts.out [2026-09-09 11:44:23,941] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M10_featureCounts.out [2026-09-09 11:44:23,941] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M10_featureCounts.out [2026-09-09 11:44:23,941] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M10_featureCounts.out [2026-09-09 11:44:23,941] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M10_featureCounts.out [2026-09-09 11:44:24,839] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M10_metrics [2026-09-09 11:44:24,844] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M10_metrics [2026-09-09 11:44:24,851] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M10_metrics [2026-09-09 11:44:24,911] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_19_1.fq.gz [2026-09-09 11:44:24,911] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_19_2.fq.gz [2026-09-09 11:44:24,959] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M18_SJ.out.tab [2026-09-09 11:44:24,962] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M18_SJ.out.tab [2026-09-09 11:44:24,963] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M18_SJ.out.tab [2026-09-09 11:44:24,963] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M18_SJ.out.tab [2026-09-09 11:44:24,968] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G213_M18_SJ.out.tab [2026-09-09 11:44:24,968] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M18_SJ.out.tab [2026-09-09 11:44:24,968] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M18_SJ.out.tab [2026-09-09 11:44:24,968] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M18_SJ.out.tab [2026-09-09 11:44:24,969] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M18_SJ.out.tab [2026-09-09 11:44:24,969] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M18_SJ.out.tab [2026-09-09 11:44:24,969] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M18_SJ.out.tab [2026-09-09 11:44:24,969] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M18_SJ.out.tab [2026-09-09 11:44:24,969] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G213_M18_SJ.out.tab [2026-09-09 11:44:24,969] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G213_M18_SJ.out.tab [2026-09-09 11:44:27,061] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M18_primary_unique.bam [2026-09-09 11:44:27,134] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M18_primary_unique.bam.bai [2026-09-09 11:44:27,212] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M18_marked_dup_metrics.txt [2026-09-09 11:44:27,216] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M18_marked_dup_metrics.txt [2026-09-09 11:44:27,217] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M18_marked_dup_metrics.txt [2026-09-09 11:44:27,217] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M18_marked_dup_metrics.txt [2026-09-09 11:44:27,224] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M18_marked_dup_metrics.txt [2026-09-09 11:44:27,240] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M18_hist.pdf [2026-09-09 11:44:27,274] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M18_metrics [2026-09-09 11:44:27,318] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M18_metrics [2026-09-09 11:44:27,318] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M18_metrics [2026-09-09 11:44:27,318] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M18_metrics [2026-09-09 11:44:27,326] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M18_metrics [2026-09-09 11:44:27,406] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M18_featureCounts.out [2026-09-09 11:44:27,409] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M18_featureCounts.out [2026-09-09 11:44:27,410] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M18_featureCounts.out [2026-09-09 11:44:27,410] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M18_featureCounts.out [2026-09-09 11:44:27,417] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M18_featureCounts.out [2026-09-09 11:44:27,417] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M18_featureCounts.out [2026-09-09 11:44:27,417] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M18_featureCounts.out [2026-09-09 11:44:27,417] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M18_featureCounts.out [2026-09-09 11:44:27,417] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M18_featureCounts.out [2026-09-09 11:44:27,417] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M18_featureCounts.out [2026-09-09 11:44:27,417] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M18_featureCounts.out [2026-09-09 11:44:28,358] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M18_featureCounts.out [2026-09-09 11:44:28,362] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M18_featureCounts.out [2026-09-09 11:44:28,363] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M18_featureCounts.out [2026-09-09 11:44:28,363] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M18_featureCounts.out [2026-09-09 11:44:28,370] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M18_featureCounts.out [2026-09-09 11:44:28,370] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M18_featureCounts.out [2026-09-09 11:44:28,370] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M18_featureCounts.out [2026-09-09 11:44:28,371] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M18_featureCounts.out [2026-09-09 11:44:28,371] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M18_featureCounts.out [2026-09-09 11:44:28,371] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M18_featureCounts.out [2026-09-09 11:44:28,371] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M18_featureCounts.out [2026-09-09 11:44:29,314] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M18_metrics [2026-09-09 11:44:29,317] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M18_metrics [2026-09-09 11:44:29,321] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M18_metrics [2026-09-09 11:44:29,377] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_11_1.fq.gz [2026-09-09 11:44:29,377] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_11_2.fq.gz [2026-09-09 11:44:29,456] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M16_primary_unique.bam [2026-09-09 11:44:29,518] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M16_SJ.out.tab [2026-09-09 11:44:29,522] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M16_SJ.out.tab [2026-09-09 11:44:29,523] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M16_SJ.out.tab [2026-09-09 11:44:29,523] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M16_SJ.out.tab [2026-09-09 11:44:29,531] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G213_M16_SJ.out.tab [2026-09-09 11:44:29,531] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M16_SJ.out.tab [2026-09-09 11:44:29,531] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M16_SJ.out.tab [2026-09-09 11:44:29,531] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M16_SJ.out.tab [2026-09-09 11:44:29,531] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M16_SJ.out.tab [2026-09-09 11:44:29,531] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M16_SJ.out.tab [2026-09-09 11:44:29,531] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M16_SJ.out.tab [2026-09-09 11:44:29,531] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M16_SJ.out.tab [2026-09-09 11:44:29,531] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G213_M16_SJ.out.tab [2026-09-09 11:44:29,531] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G213_M16_SJ.out.tab [2026-09-09 11:44:31,768] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M16_primary_unique.bam.bai [2026-09-09 11:44:31,829] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M16_marked_dup_metrics.txt [2026-09-09 11:44:31,834] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M16_marked_dup_metrics.txt [2026-09-09 11:44:31,834] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M16_marked_dup_metrics.txt [2026-09-09 11:44:31,835] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M16_marked_dup_metrics.txt [2026-09-09 11:44:31,842] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M16_marked_dup_metrics.txt [2026-09-09 11:44:31,860] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M16_hist.pdf [2026-09-09 11:44:31,888] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M16_metrics [2026-09-09 11:44:31,891] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M16_metrics [2026-09-09 11:44:31,892] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M16_metrics [2026-09-09 11:44:31,892] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M16_metrics [2026-09-09 11:44:31,899] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M16_metrics [2026-09-09 11:44:31,987] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M16_featureCounts.out [2026-09-09 11:44:31,991] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M16_featureCounts.out [2026-09-09 11:44:31,992] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M16_featureCounts.out [2026-09-09 11:44:31,992] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M16_featureCounts.out [2026-09-09 11:44:32,000] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M16_featureCounts.out [2026-09-09 11:44:32,000] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M16_featureCounts.out [2026-09-09 11:44:32,000] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M16_featureCounts.out [2026-09-09 11:44:32,000] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M16_featureCounts.out [2026-09-09 11:44:32,001] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M16_featureCounts.out [2026-09-09 11:44:32,001] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M16_featureCounts.out [2026-09-09 11:44:32,001] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M16_featureCounts.out [2026-09-09 11:44:32,945] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M16_featureCounts.out [2026-09-09 11:44:32,949] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M16_featureCounts.out [2026-09-09 11:44:32,949] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M16_featureCounts.out [2026-09-09 11:44:32,949] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M16_featureCounts.out [2026-09-09 11:44:32,956] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M16_featureCounts.out [2026-09-09 11:44:32,956] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M16_featureCounts.out [2026-09-09 11:44:32,956] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M16_featureCounts.out [2026-09-09 11:44:32,956] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M16_featureCounts.out [2026-09-09 11:44:32,956] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M16_featureCounts.out [2026-09-09 11:44:32,956] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M16_featureCounts.out [2026-09-09 11:44:32,956] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M16_featureCounts.out [2026-09-09 11:44:33,881] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M16_metrics [2026-09-09 11:44:33,885] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M16_metrics [2026-09-09 11:44:33,889] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M16_metrics [2026-09-09 11:44:33,933] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_8_2.fq.gz [2026-09-09 11:44:33,934] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_8_1.fq.gz [2026-09-09 11:44:34,035] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M20_primary_unique.bam.bai [2026-09-09 11:44:34,062] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M20_primary_unique.bam [2026-09-09 11:44:34,097] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M20_SJ.out.tab [2026-09-09 11:44:34,101] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M20_SJ.out.tab [2026-09-09 11:44:34,102] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M20_SJ.out.tab [2026-09-09 11:44:34,102] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M20_SJ.out.tab [2026-09-09 11:44:34,109] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G213_M20_SJ.out.tab [2026-09-09 11:44:34,109] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M20_SJ.out.tab [2026-09-09 11:44:34,109] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M20_SJ.out.tab [2026-09-09 11:44:34,109] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M20_SJ.out.tab [2026-09-09 11:44:34,109] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M20_SJ.out.tab [2026-09-09 11:44:34,109] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M20_SJ.out.tab [2026-09-09 11:44:34,109] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M20_SJ.out.tab [2026-09-09 11:44:34,109] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M20_SJ.out.tab [2026-09-09 11:44:34,109] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G213_M20_SJ.out.tab [2026-09-09 11:44:34,109] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G213_M20_SJ.out.tab [2026-09-09 11:44:36,084] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M20_marked_dup_metrics.txt [2026-09-09 11:44:36,089] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M20_marked_dup_metrics.txt [2026-09-09 11:44:36,090] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M20_marked_dup_metrics.txt [2026-09-09 11:44:36,090] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M20_marked_dup_metrics.txt [2026-09-09 11:44:36,096] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M20_marked_dup_metrics.txt [2026-09-09 11:44:36,121] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M20_hist.pdf [2026-09-09 11:44:36,146] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M20_metrics [2026-09-09 11:44:36,150] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M20_metrics [2026-09-09 11:44:36,151] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M20_metrics [2026-09-09 11:44:36,151] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M20_metrics [2026-09-09 11:44:36,160] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M20_metrics [2026-09-09 11:44:36,236] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M20_featureCounts.out [2026-09-09 11:44:36,241] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M20_featureCounts.out [2026-09-09 11:44:36,241] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M20_featureCounts.out [2026-09-09 11:44:36,241] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M20_featureCounts.out [2026-09-09 11:44:36,249] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M20_featureCounts.out [2026-09-09 11:44:36,249] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M20_featureCounts.out [2026-09-09 11:44:36,250] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M20_featureCounts.out [2026-09-09 11:44:36,250] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M20_featureCounts.out [2026-09-09 11:44:36,250] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M20_featureCounts.out [2026-09-09 11:44:36,250] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M20_featureCounts.out [2026-09-09 11:44:36,250] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M20_featureCounts.out [2026-09-09 11:44:37,334] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M20_featureCounts.out [2026-09-09 11:44:37,338] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M20_featureCounts.out [2026-09-09 11:44:37,387] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M20_featureCounts.out [2026-09-09 11:44:37,387] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M20_featureCounts.out [2026-09-09 11:44:37,396] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M20_featureCounts.out [2026-09-09 11:44:37,396] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M20_featureCounts.out [2026-09-09 11:44:37,396] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M20_featureCounts.out [2026-09-09 11:44:37,396] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M20_featureCounts.out [2026-09-09 11:44:37,396] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M20_featureCounts.out [2026-09-09 11:44:37,396] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M20_featureCounts.out [2026-09-09 11:44:37,396] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M20_featureCounts.out [2026-09-09 11:44:38,331] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M20_metrics [2026-09-09 11:44:38,336] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M20_metrics [2026-09-09 11:44:38,343] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M20_metrics [2026-09-09 11:44:38,397] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_1_1.fq.gz [2026-09-09 11:44:38,398] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G_1_2.fq.gz [2026-09-09 11:44:38,482] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M1_primary_unique.bam.bai [2026-09-09 11:44:38,545] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M1_SJ.out.tab [2026-09-09 11:44:38,549] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M1_SJ.out.tab [2026-09-09 11:44:38,550] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M1_SJ.out.tab [2026-09-09 11:44:38,550] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M1_SJ.out.tab [2026-09-09 11:44:38,557] multiqc [DEBUG ] File ignored by vep/vep_html because it exceeded search pattern filesize limit: G213_M1_SJ.out.tab [2026-09-09 11:44:38,557] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M1_SJ.out.tab [2026-09-09 11:44:38,557] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M1_SJ.out.tab [2026-09-09 11:44:38,557] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M1_SJ.out.tab [2026-09-09 11:44:38,557] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M1_SJ.out.tab [2026-09-09 11:44:38,558] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M1_SJ.out.tab [2026-09-09 11:44:38,558] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M1_SJ.out.tab [2026-09-09 11:44:38,558] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M1_SJ.out.tab [2026-09-09 11:44:38,558] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: G213_M1_SJ.out.tab [2026-09-09 11:44:38,558] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: G213_M1_SJ.out.tab [2026-09-09 11:44:40,743] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M1_primary_unique.bam [2026-09-09 11:44:40,911] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M1_marked_dup_metrics.txt [2026-09-09 11:44:40,916] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M1_marked_dup_metrics.txt [2026-09-09 11:44:40,916] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M1_marked_dup_metrics.txt [2026-09-09 11:44:40,916] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M1_marked_dup_metrics.txt [2026-09-09 11:44:40,924] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M1_marked_dup_metrics.txt [2026-09-09 11:44:40,944] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: G213_M1_hist.pdf [2026-09-09 11:44:40,962] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M1_metrics [2026-09-09 11:44:40,966] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M1_metrics [2026-09-09 11:44:40,966] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M1_metrics [2026-09-09 11:44:40,966] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M1_metrics [2026-09-09 11:44:40,974] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M1_metrics [2026-09-09 11:44:41,044] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M1_featureCounts.out [2026-09-09 11:44:41,048] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M1_featureCounts.out [2026-09-09 11:44:41,048] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M1_featureCounts.out [2026-09-09 11:44:41,048] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M1_featureCounts.out [2026-09-09 11:44:41,055] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M1_featureCounts.out [2026-09-09 11:44:41,055] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M1_featureCounts.out [2026-09-09 11:44:41,055] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M1_featureCounts.out [2026-09-09 11:44:41,055] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M1_featureCounts.out [2026-09-09 11:44:41,055] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M1_featureCounts.out [2026-09-09 11:44:41,055] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M1_featureCounts.out [2026-09-09 11:44:41,055] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M1_featureCounts.out [2026-09-09 11:44:41,993] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M1_featureCounts.out [2026-09-09 11:44:41,996] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: G213_M1_featureCounts.out [2026-09-09 11:44:41,996] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: G213_M1_featureCounts.out [2026-09-09 11:44:41,996] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M1_featureCounts.out [2026-09-09 11:44:42,000] multiqc [DEBUG ] File ignored by vep/vep_txt because it exceeded search pattern filesize limit: G213_M1_featureCounts.out [2026-09-09 11:44:42,001] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M1_featureCounts.out [2026-09-09 11:44:42,001] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: G213_M1_featureCounts.out [2026-09-09 11:44:42,001] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: G213_M1_featureCounts.out [2026-09-09 11:44:42,001] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: G213_M1_featureCounts.out [2026-09-09 11:44:42,001] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: G213_M1_featureCounts.out [2026-09-09 11:44:42,001] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: G213_M1_featureCounts.out [2026-09-09 11:44:42,929] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: G213_M1_metrics [2026-09-09 11:44:42,931] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: G213_M1_metrics [2026-09-09 11:44:42,996] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: G213_M1_metrics [2026-09-09 11:44:43,050] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-09-09 11:44:43,053] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-09-09 11:44:43,061] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Summarize_Jobs.sh [2026-09-09 11:44:43,079] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-09-09 11:44:43,083] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-09-09 11:44:43,089] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-09-09 11:44:43,103] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-09-09 11:44:43,106] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-09-09 11:44:43,128] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: FASTQC.qsub [2026-09-09 11:44:43,132] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: FASTQC.qsub [2026-09-09 11:44:43,137] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: FASTQC.qsub [2026-09-09 11:44:43,153] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastq_reads.qsub [2026-09-09 11:44:43,157] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastq_reads.qsub [2026-09-09 11:44:43,183] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M11.o7502891 [2026-09-09 11:44:43,186] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M11.o7502891 [2026-09-09 11:44:43,193] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M11.o7502891 [2026-09-09 11:44:43,210] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M3.o7502883 [2026-09-09 11:44:43,213] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M3.o7502883 [2026-09-09 11:44:43,217] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M3.o7502883 [2026-09-09 11:44:43,236] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M13.o7502893 [2026-09-09 11:44:43,240] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M13.o7502893 [2026-09-09 11:44:43,244] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M13.o7502893 [2026-09-09 11:44:43,271] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M18.o7502898 [2026-09-09 11:44:43,275] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M18.o7502898 [2026-09-09 11:44:43,280] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M18.o7502898 [2026-09-09 11:44:43,297] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M1.o7502881 [2026-09-09 11:44:43,300] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M1.o7502881 [2026-09-09 11:44:43,306] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M1.o7502881 [2026-09-09 11:44:43,319] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M8.o7502888 [2026-09-09 11:44:43,322] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M8.o7502888 [2026-09-09 11:44:43,329] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M8.o7502888 [2026-09-09 11:44:43,346] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M4.o7502884 [2026-09-09 11:44:43,350] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M4.o7502884 [2026-09-09 11:44:43,357] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M4.o7502884 [2026-09-09 11:44:43,378] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M6.o7502886 [2026-09-09 11:44:43,382] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M6.o7502886 [2026-09-09 11:44:43,391] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M6.o7502886 [2026-09-09 11:44:43,412] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M15.o7502895 [2026-09-09 11:44:43,415] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M15.o7502895 [2026-09-09 11:44:43,420] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M15.o7502895 [2026-09-09 11:44:43,461] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M17.o7502897 [2026-09-09 11:44:43,464] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M17.o7502897 [2026-09-09 11:44:43,468] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M17.o7502897 [2026-09-09 11:44:43,485] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M20.o7502900 [2026-09-09 11:44:43,490] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M20.o7502900 [2026-09-09 11:44:43,496] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M20.o7502900 [2026-09-09 11:44:43,511] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M21.o7502901 [2026-09-09 11:44:43,513] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M21.o7502901 [2026-09-09 11:44:43,520] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M21.o7502901 [2026-09-09 11:44:43,541] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M9.o7502889 [2026-09-09 11:44:43,547] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M9.o7502889 [2026-09-09 11:44:43,555] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M9.o7502889 [2026-09-09 11:44:43,579] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M7.o7502887 [2026-09-09 11:44:43,583] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M7.o7502887 [2026-09-09 11:44:43,589] multiqc [DEBUG ] File ignored by longranger/invocation 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[2026-09-09 11:44:43,775] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M2.o7502882 [2026-09-09 11:44:43,780] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M2.o7502882 [2026-09-09 11:44:43,787] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M2.o7502882 [2026-09-09 11:44:43,801] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M12.o7502892 [2026-09-09 11:44:43,804] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M12.o7502892 [2026-09-09 11:44:43,808] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_03_G213_MM10_G213_M12.o7502892 [2026-09-09 11:44:43,829] multiqc [DEBUG ] 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exceeded search pattern filesize limit: number_of_unique_reads.csv [2026-09-09 11:44:43,917] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: number_of_unique_reads.csv [2026-09-09 11:44:43,921] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: number_of_unique_reads.csv [2026-09-09 11:44:44,002] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: fastqc_report.html [2026-09-09 11:44:44,021] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: fastqc_report.html [2026-09-09 11:44:44,025] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: fastqc_report.html [2026-09-09 11:44:44,025] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: fastqc_report.html [2026-09-09 11:44:44,070] multiqc [DEBUG ] File ignored by 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by ccs/v4 because it exceeded search pattern filesize limit: CollectMetrics.qsub [2026-09-09 11:45:02,091] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectMetrics.qsub [2026-09-09 11:45:02,097] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectMetrics.qsub [2026-09-09 11:45:02,115] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-09-09 11:45:02,121] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-09-09 11:45:02,128] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Parameter_Descriptions.txt [2026-09-09 11:45:02,146] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-09-09 11:45:02,149] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Run_Jobs.sh [2026-09-09 11:45:02,191] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M7.o7503438 [2026-09-09 11:45:02,209] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M7.o7503438 [2026-09-09 11:45:02,212] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M7.o7503438 [2026-09-09 11:45:02,213] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M7.o7503438 [2026-09-09 11:45:02,277] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M7.o7503438 [2026-09-09 11:45:02,470] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M3.o7503434 [2026-09-09 11:45:02,503] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M3.o7503434 [2026-09-09 11:45:02,507] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M3.o7503434 [2026-09-09 11:45:02,507] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M3.o7503434 [2026-09-09 11:45:02,577] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M3.o7503434 [2026-09-09 11:45:02,610] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M19.o7503450 [2026-09-09 11:45:02,613] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M19.o7503450 [2026-09-09 11:45:02,613] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M19.o7503450 [2026-09-09 11:45:02,613] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M19.o7503450 [2026-09-09 11:45:02,620] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M19.o7503450 [2026-09-09 11:45:02,664] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M16.o7503447 [2026-09-09 11:45:02,669] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M16.o7503447 [2026-09-09 11:45:02,670] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M16.o7503447 [2026-09-09 11:45:02,670] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M16.o7503447 [2026-09-09 11:45:02,679] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M16.o7503447 [2026-09-09 11:45:02,723] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M10.o7503441 [2026-09-09 11:45:02,727] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M10.o7503441 [2026-09-09 11:45:02,727] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M10.o7503441 [2026-09-09 11:45:02,727] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M10.o7503441 [2026-09-09 11:45:02,736] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M10.o7503441 [2026-09-09 11:45:02,781] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M15.o7503446 [2026-09-09 11:45:02,786] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M15.o7503446 [2026-09-09 11:45:02,786] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M15.o7503446 [2026-09-09 11:45:02,786] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M15.o7503446 [2026-09-09 11:45:02,794] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M15.o7503446 [2026-09-09 11:45:02,836] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M24.o7503455 [2026-09-09 11:45:02,840] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M24.o7503455 [2026-09-09 11:45:02,841] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M24.o7503455 [2026-09-09 11:45:02,841] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M24.o7503455 [2026-09-09 11:45:02,851] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M24.o7503455 [2026-09-09 11:45:02,896] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M6.o7503437 [2026-09-09 11:45:02,901] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M6.o7503437 [2026-09-09 11:45:02,901] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M6.o7503437 [2026-09-09 11:45:02,901] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M6.o7503437 [2026-09-09 11:45:02,909] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M6.o7503437 [2026-09-09 11:45:02,955] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M5.o7503436 [2026-09-09 11:45:02,960] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M5.o7503436 [2026-09-09 11:45:02,961] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M5.o7503436 [2026-09-09 11:45:02,961] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M5.o7503436 [2026-09-09 11:45:02,969] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M5.o7503436 [2026-09-09 11:45:03,015] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M14.o7503445 [2026-09-09 11:45:03,019] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M14.o7503445 [2026-09-09 11:45:03,073] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M14.o7503445 [2026-09-09 11:45:03,073] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M14.o7503445 [2026-09-09 11:45:03,081] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M14.o7503445 [2026-09-09 11:45:03,119] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M1.o7503432 [2026-09-09 11:45:03,123] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M1.o7503432 [2026-09-09 11:45:03,124] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M1.o7503432 [2026-09-09 11:45:03,124] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M1.o7503432 [2026-09-09 11:45:03,129] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M1.o7503432 [2026-09-09 11:45:03,164] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M13.o7503444 [2026-09-09 11:45:03,167] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M13.o7503444 [2026-09-09 11:45:03,168] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M13.o7503444 [2026-09-09 11:45:03,168] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M13.o7503444 [2026-09-09 11:45:03,175] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M13.o7503444 [2026-09-09 11:45:03,223] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M8.o7503439 [2026-09-09 11:45:03,227] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M8.o7503439 [2026-09-09 11:45:03,228] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M8.o7503439 [2026-09-09 11:45:03,228] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M8.o7503439 [2026-09-09 11:45:03,237] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M8.o7503439 [2026-09-09 11:45:03,283] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M18.o7503449 [2026-09-09 11:45:03,286] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M18.o7503449 [2026-09-09 11:45:03,287] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M18.o7503449 [2026-09-09 11:45:03,287] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M18.o7503449 [2026-09-09 11:45:03,293] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M18.o7503449 [2026-09-09 11:45:03,363] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M9.o7503440 [2026-09-09 11:45:03,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M9.o7503440 [2026-09-09 11:45:03,366] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M9.o7503440 [2026-09-09 11:45:03,366] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M9.o7503440 [2026-09-09 11:45:03,372] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M9.o7503440 [2026-09-09 11:45:03,408] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M21.o7503452 [2026-09-09 11:45:03,411] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M21.o7503452 [2026-09-09 11:45:03,411] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M21.o7503452 [2026-09-09 11:45:03,412] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M21.o7503452 [2026-09-09 11:45:03,418] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M21.o7503452 [2026-09-09 11:45:03,462] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M4.o7503435 [2026-09-09 11:45:03,466] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M4.o7503435 [2026-09-09 11:45:03,467] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M4.o7503435 [2026-09-09 11:45:03,467] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M4.o7503435 [2026-09-09 11:45:03,475] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M4.o7503435 [2026-09-09 11:45:03,525] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M17.o7503448 [2026-09-09 11:45:03,528] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M17.o7503448 [2026-09-09 11:45:03,529] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M17.o7503448 [2026-09-09 11:45:03,529] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M17.o7503448 [2026-09-09 11:45:03,536] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M17.o7503448 [2026-09-09 11:45:03,568] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M12.o7503443 [2026-09-09 11:45:03,572] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M12.o7503443 [2026-09-09 11:45:03,572] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M12.o7503443 [2026-09-09 11:45:03,573] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M12.o7503443 [2026-09-09 11:45:03,579] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M12.o7503443 [2026-09-09 11:45:03,623] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M11.o7503442 [2026-09-09 11:45:03,627] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M11.o7503442 [2026-09-09 11:45:03,627] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M11.o7503442 [2026-09-09 11:45:03,627] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M11.o7503442 [2026-09-09 11:45:03,633] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M11.o7503442 [2026-09-09 11:45:03,670] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M22.o7503453 [2026-09-09 11:45:03,674] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M22.o7503453 [2026-09-09 11:45:03,674] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M22.o7503453 [2026-09-09 11:45:03,674] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M22.o7503453 [2026-09-09 11:45:03,679] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M22.o7503453 [2026-09-09 11:45:03,723] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M2.o7503433 [2026-09-09 11:45:03,728] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M2.o7503433 [2026-09-09 11:45:03,728] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M2.o7503433 [2026-09-09 11:45:03,728] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M2.o7503433 [2026-09-09 11:45:03,737] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M2.o7503433 [2026-09-09 11:45:03,789] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M20.o7503451 [2026-09-09 11:45:03,792] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M20.o7503451 [2026-09-09 11:45:03,793] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M20.o7503451 [2026-09-09 11:45:03,793] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M20.o7503451 [2026-09-09 11:45:03,799] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M20.o7503451 [2026-09-09 11:45:03,834] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M23.o7503454 [2026-09-09 11:45:03,838] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M23.o7503454 [2026-09-09 11:45:03,839] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M23.o7503454 [2026-09-09 11:45:03,839] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M23.o7503454 [2026-09-09 11:45:03,848] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Step_06_G213_MM10_G213_M23.o7503454 [2026-09-09 11:45:03,875] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-09-09 11:45:03,878] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-09-09 11:45:03,884] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectInsertSizeMetrics_Stats.txt [2026-09-09 11:45:03,899] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-09-09 11:45:03,905] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-09-09 11:45:03,913] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CollectRnaSeqMetrics_Stats.txt [2026-09-09 11:45:03,926] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CollectInsertSizeMetrics_Plots.pdf [2026-09-09 11:45:03,944] multiqc [DEBUG ] File ignored by ccs/v4 because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-09-09 11:45:03,948] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-09-09 11:45:03,948] multiqc [DEBUG ] File ignored by nanostat because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-09-09 11:45:03,948] multiqc [DEBUG ] File ignored by lima/summary because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-09-09 11:45:03,956] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: rRNA_intervalList_sorted.STAR [2026-09-09 11:45:06,512] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.4.3 [2026-09-09 11:45:06,530] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.4.3 [2026-09-09 11:45:06,533] multiqc [DEBUG ] No samples found: custom_content [2026-09-09 11:45:06,559] multiqc [DEBUG ] No samples found: ccs [2026-09-09 11:45:06,577] multiqc [DEBUG ] No samples found: ngsderive [2026-09-09 11:45:06,599] multiqc [DEBUG ] No samples found: purple [2026-09-09 11:45:06,782] multiqc [DEBUG ] No samples found: conpair [2026-09-09 11:45:06,803] multiqc [DEBUG ] No samples found: lima [2026-09-09 11:45:06,826] multiqc [DEBUG ] No samples found: peddy [2026-09-09 11:45:06,855] multiqc [DEBUG ] No samples found: somalier [2026-09-09 11:45:06,875] multiqc [DEBUG ] No samples found: methylQA [2026-09-09 11:45:06,936] multiqc.modules.mosdepth.mosdepth [DEBUG ] include_contigs: [] [2026-09-09 11:45:06,936] multiqc.modules.mosdepth.mosdepth [DEBUG ] exclude_contigs: [] [2026-09-09 11:45:06,936] multiqc [DEBUG ] No samples found: mosdepth [2026-09-09 11:45:06,946] multiqc [DEBUG ] No samples found: phantompeakqualtools [2026-09-09 11:45:06,968] multiqc [DEBUG ] No samples found: qualimap [2026-09-09 11:45:06,995] multiqc [DEBUG ] No samples found: preseq [2026-09-09 11:45:07,013] multiqc [DEBUG ] No samples found: quast [2026-09-09 11:45:07,040] multiqc [DEBUG ] No samples found: qorts [2026-09-09 11:45:07,066] multiqc [DEBUG ] No samples found: rna_seqc [2026-09-09 11:45:07,082] multiqc [DEBUG ] No samples found: rockhopper [2026-09-09 11:45:07,100] multiqc [DEBUG ] No samples found: rsem [2026-09-09 11:45:07,175] multiqc.modules.rseqc.rseqc [INFO ] Found 24 infer_experiment reports [2026-09-09 11:45:07,196] multiqc [DEBUG ] No samples found: busco [2026-09-09 11:45:07,212] multiqc [DEBUG ] No samples found: bustools [2026-09-09 11:45:07,236] multiqc [DEBUG ] No samples found: goleft_indexcov [2026-09-09 11:45:07,255] multiqc [DEBUG ] No samples found: gffcompare [2026-09-09 11:45:07,407] multiqc [DEBUG ] No samples found: disambiguate [2026-09-09 11:45:07,428] multiqc [DEBUG ] No samples found: supernova [2026-09-09 11:45:07,511] multiqc [DEBUG ] No samples found: deeptools [2026-09-09 11:45:07,532] multiqc [DEBUG ] No samples found: sargasso [2026-09-09 11:45:07,553] multiqc [DEBUG ] No samples found: verifybamid [2026-09-09 11:45:07,574] multiqc [DEBUG ] No samples found: mirtrace [2026-09-09 11:45:07,596] multiqc [DEBUG ] No samples found: happy [2026-09-09 11:45:07,610] multiqc [DEBUG ] No samples found: mirtop [2026-09-09 11:45:07,635] multiqc [DEBUG ] No samples found: sambamba [2026-09-09 11:45:07,653] multiqc [DEBUG ] No samples found: homer [2026-09-09 11:45:07,674] multiqc [DEBUG ] No samples found: hops [2026-09-09 11:45:07,691] multiqc [DEBUG ] No samples found: macs2 [2026-09-09 11:45:07,699] multiqc [DEBUG ] No samples found: theta2 [2026-09-09 11:45:07,713] multiqc [DEBUG ] No samples found: snpeff [2026-09-09 11:45:07,745] multiqc [DEBUG ] No samples found: gatk [2026-09-09 11:45:07,756] multiqc [DEBUG ] No samples found: htseq [2026-09-09 11:45:07,784] multiqc [DEBUG ] No samples found: bcftools [2026-09-09 11:45:07,813] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G213_M2_sorted [2026-09-09 11:45:07,816] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G213_M13_sorted [2026-09-09 11:45:07,819] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G213_M11_sorted [2026-09-09 11:45:07,822] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G213_M19_sorted [2026-09-09 11:45:07,824] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G213_M3_sorted [2026-09-09 11:45:07,827] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G213_M23_sorted [2026-09-09 11:45:07,830] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G213_M7_sorted [2026-09-09 11:45:07,832] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G213_M21_sorted [2026-09-09 11:45:07,835] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G213_M4_sorted [2026-09-09 11:45:07,838] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G213_M8_sorted [2026-09-09 11:45:07,841] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G213_M14_sorted [2026-09-09 11:45:07,843] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G213_M5_sorted [2026-09-09 11:45:07,846] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G213_M12_sorted [2026-09-09 11:45:07,849] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G213_M9_sorted [2026-09-09 11:45:07,851] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G213_M24_sorted [2026-09-09 11:45:07,854] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G213_M6_sorted [2026-09-09 11:45:07,856] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G213_M22_sorted [2026-09-09 11:45:07,857] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G213_M17_sorted [2026-09-09 11:45:07,859] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G213_M15_sorted [2026-09-09 11:45:07,860] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G213_M10_sorted [2026-09-09 11:45:07,862] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G213_M18_sorted [2026-09-09 11:45:07,863] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G213_M16_sorted [2026-09-09 11:45:07,864] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G213_M20_sorted [2026-09-09 11:45:07,865] multiqc.modules.featureCounts.feature_counts [DEBUG ] Duplicate sample name found! Overwriting: G213_M1_sorted [2026-09-09 11:45:07,865] multiqc.modules.featureCounts.feature_counts [INFO ] Found 24 reports [2026-09-09 11:45:07,915] multiqc [DEBUG ] No samples found: fgbio [2026-09-09 11:45:08,003] multiqc [DEBUG ] No samples found: dragen [2026-09-09 11:45:08,038] multiqc [DEBUG ] No samples found: dedup [2026-09-09 11:45:08,062] multiqc [DEBUG ] No samples found: damageprofiler [2026-09-09 11:45:08,231] multiqc [DEBUG ] No samples found: biobambam2 [2026-09-09 11:45:08,253] multiqc [DEBUG ] No samples found: jcvi [2026-09-09 11:45:08,258] multiqc [DEBUG ] No samples found: mtnucratio [2026-09-09 11:45:09,021] multiqc.modules.picard.picard [INFO ] Found 24 InsertSizeMetrics reports [2026-09-09 11:45:09,049] multiqc.modules.picard.picard [INFO ] Found 24 MarkDuplicates reports [2026-09-09 11:45:09,130] multiqc.modules.picard.picard [INFO ] Found 24 RnaSeqMetrics reports [2026-09-09 11:45:09,149] multiqc [DEBUG ] No samples found: vep [2026-09-09 11:45:09,167] multiqc [DEBUG ] No samples found: sentieon [2026-09-09 11:45:09,191] multiqc [DEBUG ] No samples found: prokka [2026-09-09 11:45:09,278] multiqc [DEBUG ] No samples found: qc3C [2026-09-09 11:45:09,299] multiqc [DEBUG ] No samples found: nanostat [2026-09-09 11:45:09,308] multiqc [DEBUG ] No samples found: samblaster [2026-09-09 11:45:09,433] multiqc.modules.samtools.samtools [INFO ] Found 72 flagstat reports [2026-09-09 11:45:09,460] multiqc [DEBUG ] No samples found: sexdeterrmine [2026-09-09 11:45:09,470] multiqc [DEBUG ] No samples found: eigenstratdatabasetools [2026-09-09 11:45:09,482] multiqc [DEBUG ] No samples found: bamtools [2026-09-09 11:45:09,489] multiqc [DEBUG ] No samples found: jellyfish [2026-09-09 11:45:09,503] multiqc [DEBUG ] No samples found: vcftools [2026-09-09 11:45:09,521] multiqc [DEBUG ] No samples found: longranger [2026-09-09 11:45:09,549] multiqc [DEBUG ] No samples found: stacks [2026-09-09 11:45:09,573] multiqc [DEBUG ] No samples found: varscan2 [2026-09-09 11:45:09,597] multiqc [DEBUG ] No samples found: snippy [2026-09-09 11:45:09,644] multiqc [DEBUG ] No samples found: bbmap [2026-09-09 11:45:09,674] multiqc [DEBUG ] No samples found: bismark [2026-09-09 11:45:09,710] multiqc [DEBUG ] No samples found: biscuit [2026-09-09 11:45:09,732] multiqc [DEBUG ] No samples found: hicexplorer [2026-09-09 11:45:09,754] multiqc [DEBUG ] No samples found: hicup [2026-09-09 11:45:09,771] multiqc [DEBUG ] No samples found: hicpro [2026-09-09 11:45:09,780] multiqc [DEBUG ] No samples found: salmon [2026-09-09 11:45:09,796] multiqc [DEBUG ] No samples found: kallisto [2026-09-09 11:45:09,823] multiqc [DEBUG ] No samples found: slamdunk [2026-09-09 11:45:12,220] multiqc.modules.star.star [INFO ] Found 24 reports and 24 gene count files [2026-09-09 11:45:12,240] multiqc [DEBUG ] No samples found: hisat2 [2026-09-09 11:45:12,257] multiqc [DEBUG ] No samples found: tophat [2026-09-09 11:45:12,286] multiqc [DEBUG ] No samples found: bowtie2 [2026-09-09 11:45:12,304] multiqc [DEBUG ] No samples found: bowtie1 [2026-09-09 11:45:12,325] multiqc [DEBUG ] No samples found: snpsplit [2026-09-09 11:45:12,351] multiqc [DEBUG ] No samples found: odgi [2026-09-09 11:45:12,374] multiqc [DEBUG ] No samples found: pangolin [2026-09-09 11:45:12,383] multiqc [DEBUG ] No samples found: kat [2026-09-09 11:45:12,390] multiqc [DEBUG ] No samples found: leehom [2026-09-09 11:45:12,409] multiqc [DEBUG ] No samples found: adapterRemoval [2026-09-09 11:45:12,419] multiqc [DEBUG ] No samples found: clipandmerge [2026-09-09 11:45:12,443] multiqc [DEBUG ] No samples found: cutadapt [2026-09-09 11:45:12,452] multiqc [DEBUG ] No samples found: flexbar [2026-09-09 11:45:12,474] multiqc [DEBUG ] No samples found: kaiju [2026-09-09 11:45:12,499] multiqc [DEBUG ] No samples found: kraken [2026-09-09 11:45:12,523] multiqc [DEBUG ] No samples found: malt [2026-09-09 11:45:12,551] multiqc [DEBUG ] No samples found: trimmomatic [2026-09-09 11:45:12,573] multiqc [DEBUG ] No samples found: sickle [2026-09-09 11:45:12,605] multiqc [DEBUG ] No samples found: skewer [2026-09-09 11:45:12,615] multiqc [DEBUG ] No samples found: sortmerna [2026-09-09 11:45:12,623] multiqc [DEBUG ] No samples found: biobloomtools [2026-09-09 11:45:12,653] multiqc [DEBUG ] No samples found: fastq_screen [2026-09-09 11:45:12,691] multiqc [DEBUG ] No samples found: afterqc [2026-09-09 11:45:12,743] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-09-09 11:45:12,767] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-09-09 11:45:12,787] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-09-09 11:45:12,812] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-09-09 11:45:12,828] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-09-09 11:45:12,849] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-09-09 11:45:12,874] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-09-09 11:45:12,896] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-09-09 11:45:12,935] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-09-09 11:45:12,954] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-09-09 11:45:12,980] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-09-09 11:45:13,002] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-09-09 11:45:13,038] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-09-09 11:45:13,058] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-09-09 11:45:13,078] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-09-09 11:45:13,097] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-09-09 11:45:13,164] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-09-09 11:45:13,187] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-09-09 11:45:13,206] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-09-09 11:45:13,229] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-09-09 11:45:13,248] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-09-09 11:45:13,264] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-09-09 11:45:13,286] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-09-09 11:45:13,309] multiqc.modules.fastp.fastp [DEBUG ] No duplication rate plot data: fastp.json [2026-09-09 11:45:13,311] multiqc.modules.fastp.fastp [INFO ] Found 24 reports [2026-09-09 11:45:25,929] multiqc.modules.fastqc.fastqc [INFO ] Found 48 reports [2026-09-09 11:45:25,930] multiqc.modules.base_module [DEBUG ] Skipping section 'fastqc_sequence_counts' because specified in user config [2026-09-09 11:45:29,781] multiqc [DEBUG ] No samples found: pychopper [2026-09-09 11:45:29,803] multiqc [DEBUG ] No samples found: pycoqc [2026-09-09 11:45:29,832] multiqc [DEBUG ] No samples found: minionqc [2026-09-09 11:45:29,858] multiqc [DEBUG ] No samples found: multivcfanalyzer [2026-09-09 11:45:29,884] multiqc [DEBUG ] No samples found: clusterflow [2026-09-09 11:45:29,902] multiqc [DEBUG ] No samples found: bcl2fastq [2026-09-09 11:45:29,958] multiqc [DEBUG ] No samples found: bclconvert [2026-09-09 11:45:29,974] multiqc [DEBUG ] No samples found: interop [2026-09-09 11:45:29,991] multiqc [DEBUG ] No samples found: ivar [2026-09-09 11:45:30,021] multiqc [DEBUG ] No samples found: flash [2026-09-09 11:45:30,053] multiqc [DEBUG ] No samples found: seqyclean [2026-09-09 11:45:30,060] multiqc [DEBUG ] No samples found: optitype [2026-09-09 11:45:30,196] multiqc [INFO ] Compressing plot data [2026-09-09 11:45:32,689] multiqc [INFO ] Report : multiqc_report.html [2026-09-09 11:45:32,689] multiqc [INFO ] Data : multiqc_data [2026-09-09 11:45:32,689] multiqc [DEBUG ] Moving data file from '/scratch/tmpw9ygw8nd/multiqc_data' to '/projectnb/wax-dk/max/G213_RKinemann/pipeline_mm10/Scripts/99_final_summary/G213_MM10_multiqc_report/multiqc_data' [2026-09-09 11:45:33,362] multiqc [INFO ] MultiQC complete [2026-09-09 11:45:33,362] multiqc [WARNING] 1 flat-image plot used in the report due to large sample numbers