{ "report_data_sources": { "RSeQC": { "infer_experiment": { "G192_M33_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M33/Read_Strandness/G192_M33_Read_Strandness.txt", "G192_M31_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M31/Read_Strandness/G192_M31_Read_Strandness.txt", "G192_M18_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M18/Read_Strandness/G192_M18_Read_Strandness.txt", "G192_M06_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M06/Read_Strandness/G192_M06_Read_Strandness.txt", "G192_M04_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M04/Read_Strandness/G192_M04_Read_Strandness.txt", "G192_M27_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M27/Read_Strandness/G192_M27_Read_Strandness.txt", "G192_M25_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M25/Read_Strandness/G192_M25_Read_Strandness.txt", "G192_M13_Read_Strandness": 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"G192_M28_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M28/Read_Strandness/G192_M28_Read_Strandness.txt", "G192_M16_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M16/Read_Strandness/G192_M16_Read_Strandness.txt", "G192_M14_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M14/Read_Strandness/G192_M14_Read_Strandness.txt", "G192_M02_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M02/Read_Strandness/G192_M02_Read_Strandness.txt", "G192_M23_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M23/Read_Strandness/G192_M23_Read_Strandness.txt", "G192_M21_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M21/Read_Strandness/G192_M21_Read_Strandness.txt", "G192_M11_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M11/Read_Strandness/G192_M11_Read_Strandness.txt", "G192_M32_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M32/Read_Strandness/G192_M32_Read_Strandness.txt", "G192_M30_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M30/Read_Strandness/G192_M30_Read_Strandness.txt", "G192_M08_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M08/Read_Strandness/G192_M08_Read_Strandness.txt", "G192_M29_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M29/Read_Strandness/G192_M29_Read_Strandness.txt", "G192_M17_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M17/Read_Strandness/G192_M17_Read_Strandness.txt", "G192_M15_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M15/Read_Strandness/G192_M15_Read_Strandness.txt", "G192_M05_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M05/Read_Strandness/G192_M05_Read_Strandness.txt", "G192_M03_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M03/Read_Strandness/G192_M03_Read_Strandness.txt", "G192_M26_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M26/Read_Strandness/G192_M26_Read_Strandness.txt", "G192_M24_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M24/Read_Strandness/G192_M24_Read_Strandness.txt", "G192_M12_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M12/Read_Strandness/G192_M12_Read_Strandness.txt", "G192_M10_Read_Strandness": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M10/Read_Strandness/G192_M10_Read_Strandness.txt" } }, "featureCounts": { "all_sections": { "G192_M33_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M33/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M33_featureCounts.out.summary", "G192_M31_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M31/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M31_featureCounts.out.summary", "G192_M18_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M18/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M18_featureCounts.out.summary", "G192_M06_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M06/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M06_featureCounts.out.summary", "G192_M04_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M04/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M04_featureCounts.out.summary", "G192_M27_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M27/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M27_featureCounts.out.summary", "G192_M25_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M25/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M25_featureCounts.out.summary", "G192_M13_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M13/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M13_featureCounts.out.summary", "G192_M01_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M01/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M01_featureCounts.out.summary", "G192_M34_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M34/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M34_featureCounts.out.summary", "G192_M22_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M22/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M22_featureCounts.out.summary", "G192_M20_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M20/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M20_featureCounts.out.summary", "G192_M19_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M19/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M19_featureCounts.out.summary", "G192_M09_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M09/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M09_featureCounts.out.summary", "G192_M07_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M07/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M07_featureCounts.out.summary", "G192_M28_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M28/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M28_featureCounts.out.summary", "G192_M16_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M16/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M16_featureCounts.out.summary", "G192_M14_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M14/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M14_featureCounts.out.summary", "G192_M02_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M02/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M02_featureCounts.out.summary", "G192_M23_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M23/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M23_featureCounts.out.summary", "G192_M21_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M21/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M21_featureCounts.out.summary", "G192_M11_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M11/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M11_featureCounts.out.summary", "G192_M32_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M32/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M32_featureCounts.out.summary", "G192_M30_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M30/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M30_featureCounts.out.summary", "G192_M08_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M08/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M08_featureCounts.out.summary", "G192_M29_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M29/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M29_featureCounts.out.summary", "G192_M17_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M17/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M17_featureCounts.out.summary", "G192_M15_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M15/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M15_featureCounts.out.summary", "G192_M05_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M05/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M05_featureCounts.out.summary", "G192_M03_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M03/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M03_featureCounts.out.summary", "G192_M26_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M26/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M26_featureCounts.out.summary", "G192_M24_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M24/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M24_featureCounts.out.summary", "G192_M12_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M12/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M12_featureCounts.out.summary", "G192_M10_sorted": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M10/featureCounts/RefSeqLncRNA76k_FullGeneBody_GTF/G192_M10_featureCounts.out.summary" } }, "Samtools": { "flagstat": { "statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M10/aligner/statistics_for_primary_unique_reads.txt", "G192_M06_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M06/aligner/G192_M06_statistics_for_all_accepted_reads.txt", "G192_M06_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M06/aligner/G192_M06_statistics_for_primary_unique_reads.txt", "G192_M06_statistics_for_primary_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M06/aligner/G192_M06_statistics_for_primary_reads.txt", "G192_M04_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M04/aligner/G192_M04_statistics_for_all_accepted_reads.txt", "G192_M04_statistics_for_primary_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M04/aligner/G192_M04_statistics_for_primary_reads.txt", "G192_M04_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M04/aligner/G192_M04_statistics_for_primary_unique_reads.txt", "G192_M01_statistics_for_primary_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M01/aligner/G192_M01_statistics_for_primary_reads.txt", "G192_M01_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M01/aligner/G192_M01_statistics_for_primary_unique_reads.txt", "G192_M01_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M01/aligner/G192_M01_statistics_for_all_accepted_reads.txt", "G192_M09_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M09/aligner/G192_M09_statistics_for_all_accepted_reads.txt", "G192_M09_statistics_for_primary_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M09/aligner/G192_M09_statistics_for_primary_reads.txt", "G192_M09_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M09/aligner/G192_M09_statistics_for_primary_unique_reads.txt", "G192_M07_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M07/aligner/G192_M07_statistics_for_all_accepted_reads.txt", "G192_M07_statistics_for_primary_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M07/aligner/G192_M07_statistics_for_primary_reads.txt", "G192_M07_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M07/aligner/G192_M07_statistics_for_primary_unique_reads.txt", "G192_M02_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M02/aligner/G192_M02_statistics_for_all_accepted_reads.txt", "G192_M02_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M02/aligner/G192_M02_statistics_for_primary_unique_reads.txt", "G192_M02_statistics_for_primary_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M02/aligner/G192_M02_statistics_for_primary_reads.txt", "G192_M08_statistics_for_primary_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M08/aligner/G192_M08_statistics_for_primary_reads.txt", "G192_M08_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M08/aligner/G192_M08_statistics_for_primary_unique_reads.txt", "G192_M08_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M08/aligner/G192_M08_statistics_for_all_accepted_reads.txt", "G192_M05_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M05/aligner/G192_M05_statistics_for_all_accepted_reads.txt", "G192_M05_statistics_for_primary_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M05/aligner/G192_M05_statistics_for_primary_reads.txt", "G192_M05_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M05/aligner/G192_M05_statistics_for_primary_unique_reads.txt", "G192_M03_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M03/aligner/G192_M03_statistics_for_all_accepted_reads.txt", "G192_M03_statistics_for_primary_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M03/aligner/G192_M03_statistics_for_primary_reads.txt", "G192_M03_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M03/aligner/G192_M03_statistics_for_primary_unique_reads.txt" } }, "STAR": { "SummaryLog": { "G192_M06_G192_M06": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M06/aligner/G192_M06_G192_M06_Log.final.out", "G192_M04_G192_M04": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M04/aligner/G192_M04_G192_M04_Log.final.out", "G192_M01_G192_M01": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M01/aligner/G192_M01_G192_M01_Log.final.out", "G192_M09_G192_M09": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M09/aligner/G192_M09_G192_M09_Log.final.out", "G192_M07_G192_M07": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M07/aligner/G192_M07_G192_M07_Log.final.out", "G192_M02_G192_M02": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M02/aligner/G192_M02_G192_M02_Log.final.out", "G192_M08_G192_M08": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M08/aligner/G192_M08_G192_M08_Log.final.out", "G192_M05_G192_M05": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M05/aligner/G192_M05_G192_M05_Log.final.out", "G192_M03_G192_M03": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M03/aligner/G192_M03_G192_M03_Log.final.out" }, "ReadsPerGene": { "G192_M06": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M06/aligner/G192_M06_ReadsPerGene.out.tab", "G192_M04": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M04/aligner/G192_M04_ReadsPerGene.out.tab", "G192_M01": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M01/aligner/G192_M01_ReadsPerGene.out.tab", "G192_M09": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M09/aligner/G192_M09_ReadsPerGene.out.tab", "G192_M07": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M07/aligner/G192_M07_ReadsPerGene.out.tab", "G192_M02": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M02/aligner/G192_M02_ReadsPerGene.out.tab", "G192_M08": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M08/aligner/G192_M08_ReadsPerGene.out.tab", "G192_M05": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M05/aligner/G192_M05_ReadsPerGene.out.tab", "G192_M03": "/projectnb/wax-dk/max/G192_RNASEQ/SAMPLES/G192_M03/aligner/G192_M03_ReadsPerGene.out.tab" } } }, "report_general_stats_data": [ { "G192_M33_sorted": { "Total": 23612981, "Assigned": 22353240, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 1259741, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 94.66504885596613 }, "G192_M31_sorted": { "Total": 24191954, "Assigned": 23070419, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 1121535, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 95.3640164825049 }, "G192_M18_sorted": { "Total": 20026768, "Assigned": 18998973, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 1027795, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 94.86789381092346 }, "G192_M06_sorted": { "Total": 19976951, "Assigned": 19046560, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 930391, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 95.3426776688795 }, "G192_M04_sorted": { "Total": 22100041, "Assigned": 20841115, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 1258926, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, 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