{ "report_data_sources": { "RSeQC": { "infer_experiment": { "G177REL15_M9_Read_Strandness": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M9/Read_Strandness/G177REL15_M9_Read_Strandness.txt", "G177REL15_M6_Read_Strandness": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M6/Read_Strandness/G177REL15_M6_Read_Strandness.txt", "G177REL15_M10_Read_Strandness": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M10/Read_Strandness/G177REL15_M10_Read_Strandness.txt", "G177REL15_M11_Read_Strandness": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M11/Read_Strandness/G177REL15_M11_Read_Strandness.txt", "G177REL15_M13_Read_Strandness": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M13/Read_Strandness/G177REL15_M13_Read_Strandness.txt", "G177REL15_M12_Read_Strandness": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M12/Read_Strandness/G177REL15_M12_Read_Strandness.txt", "G177REL15_M7_Read_Strandness": 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"/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M11/aligner/G177REL15_M11_statistics_for_primary_unique_reads.txt", "G177REL15_M11_statistics_for_primary_reads": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M11/aligner/G177REL15_M11_statistics_for_primary_reads.txt", "G177REL15_M13_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M13/aligner/G177REL15_M13_statistics_for_primary_unique_reads.txt", "G177REL15_M13_statistics_for_primary_reads": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M13/aligner/G177REL15_M13_statistics_for_primary_reads.txt", "G177REL15_M13_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M13/aligner/G177REL15_M13_statistics_for_all_accepted_reads.txt", "G177REL15_M12_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M12/aligner/G177REL15_M12_statistics_for_all_accepted_reads.txt", "G177REL15_M12_statistics_for_primary_unique_reads": 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"/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M4/aligner/G177REL15_M4_statistics_for_all_accepted_reads.txt", "G177REL15_M4_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M4/aligner/G177REL15_M4_statistics_for_primary_unique_reads.txt", "G177REL15_M1_statistics_for_primary_reads": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M1/aligner/G177REL15_M1_statistics_for_primary_reads.txt", "G177REL15_M1_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M1/aligner/G177REL15_M1_statistics_for_primary_unique_reads.txt", "G177REL15_M1_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M1/aligner/G177REL15_M1_statistics_for_all_accepted_reads.txt", "G177REL15_M3_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M3/aligner/G177REL15_M3_statistics_for_primary_unique_reads.txt", "G177REL15_M3_statistics_for_primary_reads": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M3/aligner/G177REL15_M3_statistics_for_primary_reads.txt", "G177REL15_M3_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M3/aligner/G177REL15_M3_statistics_for_all_accepted_reads.txt", "G177REL15_M2_statistics_for_primary_reads": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M2/aligner/G177REL15_M2_statistics_for_primary_reads.txt", "G177REL15_M2_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M2/aligner/G177REL15_M2_statistics_for_all_accepted_reads.txt", "G177REL15_M2_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M2/aligner/G177REL15_M2_statistics_for_primary_unique_reads.txt" } }, "STAR": { "SummaryLog": { "G177REL15_M9_G177REL15_M9": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M9/aligner/G177REL15_M9_G177REL15_M9_Log.final.out", "G177REL15_M6_G177REL15_M6": 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"G177REL15_M11": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M11/aligner/G177REL15_M11_ReadsPerGene.out.tab", "G177REL15_M13": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M13/aligner/G177REL15_M13_ReadsPerGene.out.tab", "G177REL15_M12": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M12/aligner/G177REL15_M12_ReadsPerGene.out.tab", "G177REL15_M7": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M7/aligner/G177REL15_M7_ReadsPerGene.out.tab", "G177REL15_M8": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M8/aligner/G177REL15_M8_ReadsPerGene.out.tab", "G177REL15_M5": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M5/aligner/G177REL15_M5_ReadsPerGene.out.tab", "G177REL15_M4": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M4/aligner/G177REL15_M4_ReadsPerGene.out.tab", "G177REL15_M1": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M1/aligner/G177REL15_M1_ReadsPerGene.out.tab", "G177REL15_M3": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M3/aligner/G177REL15_M3_ReadsPerGene.out.tab", "G177REL15_M2": "/projectnb/wax-dk/max/G177REL15/SAMPLES/G177REL15_M2/aligner/G177REL15_M2_ReadsPerGene.out.tab" } } }, "report_general_stats_data": [ { "G177REL15_M9_sorted": { "Total": 17692418, "Assigned": 11961485, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 5730933, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 67.6079719572531 }, "G177REL15_M6_sorted": { "Total": 34344207, "Assigned": 22857276, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 11486931, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 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"Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 67.05707867796964 }, "G177REL15_M12_sorted": { "Total": 31057129, "Assigned": 20596607, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 10460522, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 66.31845139323728 }, "G177REL15_M7_sorted": { "Total": 34813847, "Assigned": 22091654, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 12722193, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, 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