{ "report_data_sources": { "RSeQC": { "infer_experiment": { "G174_M8_Read_Strandness": "/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M8/Read_Strandness/G174_M8_Read_Strandness.txt", "G174_M10_Read_Strandness": "/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M10/Read_Strandness/G174_M10_Read_Strandness.txt", "G174_M11_Read_Strandness": "/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M11/Read_Strandness/G174_M11_Read_Strandness.txt", "G174_M1_Read_Strandness": "/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M1/Read_Strandness/G174_M1_Read_Strandness.txt", "G174_M2_Read_Strandness": "/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M2/Read_Strandness/G174_M2_Read_Strandness.txt", "G174_M12_Read_Strandness": "/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M12/Read_Strandness/G174_M12_Read_Strandness.txt", "G174_M3_Read_Strandness": "/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M3/Read_Strandness/G174_M3_Read_Strandness.txt", 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"/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M2/aligner/G174_M2_statistics_for_primary_reads.txt", "G174_M2_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M2/aligner/G174_M2_statistics_for_primary_unique_reads.txt", "G174_M2_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M2/aligner/G174_M2_statistics_for_all_accepted_reads.txt", "G174_M12_statistics_for_primary_unique_reads": "/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M12/aligner/G174_M12_statistics_for_primary_unique_reads.txt", "G174_M12_statistics_for_all_accepted_reads": "/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M12/aligner/G174_M12_statistics_for_all_accepted_reads.txt", "G174_M12_statistics_for_primary_reads": "/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M12/aligner/G174_M12_statistics_for_primary_reads.txt", "G174_M3_statistics_for_primary_reads": 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"/projectnb/wax-dk/max/G174_G178_2024/G174/SAMPLES/G174_M7/aligner/G174_M7_G174_M7_Log.final.out" } } }, "report_general_stats_data": [ { "G174_M8_sorted": { "Total": 23413314, "Assigned": 22262491, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 1150823, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 95.08474964287413 }, "G174_M10_sorted": { "Total": 21184121, "Assigned": 19991842, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 1192279, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 94.37182689808088 }, "G174_M11_sorted": { "Total": 26171861, "Assigned": 24791145, 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"Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 95.50497895428639 }, "G174_M12_sorted": { "Total": 19205097, "Assigned": 18309967, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 895130, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 95.33910190612418 }, "G174_M3_sorted": { "Total": 20111368, "Assigned": 19203441, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 907927, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 95.48550352218706 }, "G174_M13_sorted": { "Total": 17688905, "Assigned": 16635650, "Unassigned_Ambiguity": 0, 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"Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 93.5158465435259 }, "G174_M5_sorted": { "Total": 24870039, "Assigned": 23604530, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 1265509, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 94.91151179939847 }, "G174_M6_sorted": { "Total": 15570601, "Assigned": 14688267, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, "Unassigned_NoFeatures": 882334, "Unassigned_Unmapped": 0, "Unassigned_MappingQuality": 0, "Unassigned_FragmentLength": 0, "Unassigned_Chimera": 0, "Unassigned_Secondary": 0, "Unassigned_Nonjunction": 0, "Unassigned_Duplicate": 0, "percent_assigned": 94.33333369726705 }, "G174_M7_sorted": { "Total": 23423510, "Assigned": 22313254, "Unassigned_Ambiguity": 0, "Unassigned_MultiMapping": 0, 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