FastQCFastQC Report
Fri 28 Jan 2022
TC1_B4_mTCDD_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameTC1_B4_mTCDD_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46925932
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGT883430.1882605123324988No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC876970.18688387478377627No Hit
CACGATCACAAGAAAGACGTGGTCCTGACAGACAGACAATCCTATTCCCTA814540.17357993017592066No Hit
GCCACGATCACAAGAAAGACGTGGTCCTGACAGACAGACAATCCTATTCCC664170.1415358143552695No Hit
CCACGATCACAAGAAAGACGTGGTCCTGACAGACAGACAATCCTATTCCCT605580.12905018061228915No Hit
CCCCACTAGCCTCTGGCAAAATGAAGTGGGTAACCTTTCTCCTCCTCCTCT508370.10833455582725558No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)