FastQCFastQC Report
Wed 13 Sep 2023
SRR12649880_pass.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12649880_pass.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42018249
Sequences flagged as poor quality0
Sequence length35-50
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCGCAGTAACACCAAGTACAGGAATATTAACCTGTTTCCCATCGACT7767171.848523007229549No Hit
CTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTC5648151.3442135582565566No Hit
CCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG5197721.237014897979209No Hit
CCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT4832771.1501597793853808No Hit
CCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGTTTCCCATC4497891.0704610751390424No Hit
CCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGGGGGCCGCCTTCGC3793280.9027696513483939No Hit
CCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTC3454690.8221879974103632No Hit
CCCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGGGGGCCGCCTTCG3255910.7748799813147853No Hit
CTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGT2688240.6397791588126388No Hit
CCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGTTTCCCATCG2682090.6383155090541731No Hit
CTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCG2567230.6109797673863088No Hit
GTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTC2340780.5570865173367886No Hit
TTCCGATTAACGCTTGCACCCTCCGTATTACCGCGGCTGCTGGCACGG2255030.536678717858995No Hit
CCCCCCTCTACGAGACTCAAGCTTGCCAGTATCAGATGCAGTTCCCAGGT2216300.527461294258121No Hit
CCCCGCTTCGCGCCCCAGCCCGACCGACCCAGCCCTTAGAGCCAATCCTT2203230.5243507410315932No Hit
CTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGTTT1823680.43402094171035066No Hit
CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTG1700910.40480268466208574No Hit
CCCATATTCAGACAGGATACCACGTGTCCCGCCCTACTCATCGAGCTCAC1672280.39798897855072446No Hit
CCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGTTTCCCATCG1628160.38748877898267486No Hit
CTTAGAGCCAATCCTTATCCCGAAGTTACGGATCCGGCTTGCCGACTTCC1531190.3644107111650464No Hit
CACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATT1526420.3632754901328706No Hit
CCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGA1472290.3503929923400663No Hit
CTTTGGTCTTGCGACGTTATGCGGTATTAGCTACCGTTTCCAGTAGTTAT1413500.33640145261645715No Hit
CCCCGGTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCG1390620.3309561995313036No Hit
CCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCT1343510.31974440438962604No Hit
CCGATTAACGCTTGCACCCTCCGTATTACCGCGGCTGCTGGCACGGAGTT1298630.3090633310302864No Hit
CGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGTCG1252230.2980205100883666No Hit
ATTCCGATTAACGCTTGCACCCTCCGTATTACCGCGGCTGCTGGCACGG1233810.293636700567889No Hit
CTCTACGAGACTCAAGCTTGCCAGTATCAGATGCAGTTCCCAGGTTGAGC1231740.2931440574784542No Hit
GTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGTTTCCC1225580.29167802780168206No Hit
CGATTAACGCTTGCACCCTCCGTATTACCGCGGCTGCTGGCACGGAGTT1194160.28420032448282173No Hit
CTTCCGGCGAGCGGGCTTTTCACCCGCTTTATCGTTACTTATGTCAGCAT1133780.26983037774848734No Hit
CACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGGGGGCCGCCTTCGCC1133060.26965902363042304No Hit
CCAGTAATTCCGATTAACGCTTGCACCCTCCGTATTACCGCGGCTGCTGG1129370.2687808337753437No Hit
CTCAGTTCTCCAGCGCCCACGGCAGATAGGGACCGAACTGTCTCACGACG1098820.26151018334914433No Hit
CCCGCTTCGCGCCCCAGCCCGACCGACCCAGCCCTTAGAGCCAATCCTT1048010.24941781843408087No Hit
CGGGAACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCG1020110.24277784635909028No Hit
CTTCGCCACCGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCT968000.23037609206418858No Hit
CTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTC922250.21948796581218794No Hit
CGGTATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCT917630.21838844355460885No Hit
CAGTAATTCCGATTAACGCTTGCACCCTCCGTATTACCGCGGCTGCTGGC895570.21313834377058405No Hit
CCTATACCCAGGTCGGACGACCGATTTGCACGTCAGGACCGCTACGGACC879070.2092114785649445No Hit
CGAGACTCAAGCTTGCCAGTATCAGATGCAGTTCCCAGGTTGAGCCCGGG862850.20535125107188548No Hit
CGCCACTCCGGATTCGGGGATCTGAACCCGACTCCCTTTCGATCGGCCG839340.19975606313342567No Hit
CTTTGGTTTTGCGACGTTATGCGGTATTAGCTACCGTTTCCAGTAGTTAT824050.19611716804286633No Hit
CCCAGCCCGACCGACCCAGCCCTTAGAGCCAATCCTTATCCCGAAGTTAC823640.19601959139230193No Hit
CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGG819600.19505810439649687No Hit
CAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCAA816710.19437030800593333No Hit
CGCAGTAACACCAAGTACAGGAATATTAACCTGTTTCCCATCGACTACGC814700.19389194442633723No Hit
GGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAGGATACC767400.1826349308368371No Hit
CTTGGTCTTCCGGCGAGCGGGCTTTTCACCCGCTTTATCGTTACTTATGT736050.1751738869461219No Hit
ATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGTCGACTT719680.17127796067846615No Hit
CTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG719270.17118038402790178No Hit
CTACGAGACTCAAGCTTGCCAGTATCAGATGCAGTTCCCAGGTTGAGCCC717300.17071154012153147No Hit
CTTTTCCTCGGGGTACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATT717160.1706782212652412No Hit
CTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTG714070.1699428265085487No Hit
CTCCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTCTGC712260.1695120612950816No Hit
CTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGGGTCTTC704450.16765334509774552No Hit
CTCGGTACTACATGCTTAGTCAGTCTTTACATTCGCTTGCCAGCTGCGG672260.15999238806928864No Hit
CCCAGTAATTCCGATTAACGCTTGCACCCTCCGTATTACCGCGGCTGCTG671240.15974963640203094No Hit
CGGGGATTTCACATCTGACTTAACAAACCGCCTGCGTGCGCTTTACGCCC648590.15435912143792568No Hit
ATTAACGCTTGCACCCTCCGTATTACCGCGGCTGCTGGCACGGAGTTAGC646280.15380936030913614No Hit
CGGATTTTCAAGGGCCAGCGAGAGCTCACCGGACGCCGCCGGAACCGCG615510.14648635168019497No Hit
CTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTT608120.14472759205172972No Hit
CGCCATTGTAGCACGTGTGTAGCCCTGGTCGTAAGGGCCATGATGACTTG602320.14334723943398975No Hit
CTTCAAAGTTCTCGTTTGAATATTTGCTACTACCACCAAGATCTGCACCT591640.140805486682703No Hit
GATTAACGCTTGCACCCTCCGTATTACCGCGGCTGCTGGCACGGAGTT588220.13999155462189775No Hit
CCCCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGGGGGCCGCCTTC576310.1371570719189179No Hit
CTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCG550320.13097166424045895No Hit
CTATACCCAGGTCGGACGACCGATTTGCACGTCAGGACCGCTACGGACCT548220.13047188139610483No Hit
CTCTTTGGTCTTGCGACGTTATGCGGTATTAGCTACCGTTTCCAGTAGTT538620.12818715982191453No Hit
CCCATCTCTCAGGACCGACTGACCCATGTTCAACTGCTGTTCACATGGA537080.1278206524027215No Hit
CGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTG534980.12732086955836736No Hit
AGTAATTCCGATTAACGCTTGCACCCTCCGTATTACCGCGGCTGCTGGC527520.125545450501757No Hit
CCCGAAGTTACGGATCCGGCTTGCCGACTTCCCTTACCTACATTGTTCC527210.12547167303425708No Hit
CCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGC520590.12389616711538835No Hit
CAAAGTTCTCGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCG516710.12297275881248644No Hit
ATTCAGACAGGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCAT514970.12255865302716445No Hit
CTCCCTTCCTCCCCGCTGAAAGTACTTTACAACCCGAAGGCCTTCTTCAT513760.12227068291208422No Hit
CACCGCTACACCTGGAATTCTACCCCCCTCTACGAGACTCAAGCTTGCC512880.12206125010111676No Hit
ATTTCTTTTCCTCGGGGTACTTAGATGTTTCAGTTCCCCCGGTTCGCCTC510470.12148768978926276No Hit
ATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTG503540.11983840640289413No Hit
GTTCGCCTCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACAC503130.11974082975232975No Hit
CTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCG502680.11963373342853958No Hit
CTCCACTTCGGCCTTCAAAGTTCTCGTTTGAATATTTGCTACTACCACC502480.11958613506241063No Hit
CTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCC499620.11890547842676642No Hit
CAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCGC496840.11824386113757383No Hit
GTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGTCG496220.11809630620257404No Hit
CCCAGCCCCGCTTCGCGCCCCAGCCCGACCGACCCAGCCCTTAGAGCCA496020.11804870783644505No Hit
CCGGGAACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCC488180.11618285188418964No Hit
CTGGTATCTTCGACTGATTTCAGCTCCACGAGCAAGTCGCTTCACCTAC474120.11283668674532345No Hit
CATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCA473610.11271531091169458No Hit
CCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGTTTCCCATCGAC448720.10679169424694494No Hit
CCTCCATCAGGCAGCTTCCCAGACATTACTCACCCGTCCGCCACTCGTC445120.10593492365662358No Hit
GTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGAC441890.1051662100436408No Hit
CGGGTTTCGGGTCTATACCCTGCAACTTAACGCCCAGTTAAGACTCGGTT437940.10422614231259375No Hit
CTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAACATTAGTCGGT437450.1041095263155778No Hit
CTGGTCGTAAGGGCCATGATGACTTGACGTCATCCCCACCTTCCTCCAGT436570.10390009350461035No Hit
CCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGT435880.10373587914146543No Hit
CCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGG435190.10357166477832049No Hit
CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGC434930.10350978690235282No Hit
CTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGTG431440.1026791954134024No Hit
CTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGGGTCT430890.10254829990654776No Hit
GTGCTTCTTCTGCGGGTAACGTCAATGAGCAAAGGTATTAACTTTACTCC425060.10116080753388842No Hit
CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGT424470.10102039235380798No Hit
CCTTGGTCTTCCGGCGAGCGGGCTTTTCACCCGCTTTATCGTTACTTATG423060.10068482387259878No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)