FastQCFastQC Report
Mon 20 Jun 2022
SRR13762407_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR13762407_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19603570
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGAATGTGTGATATGGTGGAGGGCAGCCATGAAGTCATTCTAAATTTG1695480.8648832840140851No Hit
ATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCAC537020.2739398997223465No Hit
CGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCA489110.24950047363821998No Hit
CTTTTCTACATTAAAGTTCCTTCCCGTAGAACTAGCTTCTTCTGCATGGA429740.2192151735627745No Hit
GTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGG414700.2115431015881291No Hit
CAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCCT366820.1871189788390584No Hit
CTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAAC301660.15388013509784187No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATCCACTGATCTCGTATG265030.13519476299469943TruSeq Adapter, Index 18 (97% over 36bp)
CCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAAC258730.1319810626329796No Hit
GGGCGATCTCACTCTTGTGTGCTTCTCGGCGAAACACACCCCTGGAAAAA249780.12741556767466333No Hit
CAGGATAATAGTATGCCATTCCCCATTAATCTTTTCTACATTAAAGTTCC249220.12712990542028824No Hit
CCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGA236480.1206310891332548No Hit
GCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAA234950.11985061904540857No Hit
GTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGC221180.11282638825479237No Hit
GTTGGTTCCTCGAATGTGTGATATGGTGGAGGGCAGCCATGAAGTCATTC198180.10109383137867234No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)