FastQCFastQC Report
Tue 19 Jul 2022
GSM4964635_2.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameGSM4964635_2.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35976387
Sequences flagged as poor quality0
Sequence length35-51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTAAATGGGTAAGAAGCCCGGCTCGCTGGCGTGGAGCCGGGCGTGGAAT701270.19492507682886556No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTC668250.18574683444449272No Hit
CCTCGATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTG361450.10046867685740649No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)