FastQCFastQC Report
Tue 14 Nov 2023
GSM3347588_pass.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGSM3347588_pass.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6747795
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA93850.1390824706441141No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT93260.13820811094587196No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT77110.11427436666348043No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT67610.10019569355619132No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)