FastQCFastQC Report
Tue 14 Nov 2023
GSM3347583_pass.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGSM3347583_pass.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6308731
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTAGGTATAGTAAATGTATTGAATCCATCATACGTCACAGAATATTCAC85460.13546305905260503No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT69520.11019648801002928No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA66820.1059167049601576No Hit
CTGGAATTGGACTTCTCAGTGAGACAGGATGGAATGCAGATCACAGAATT65090.10317447359857315No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)