FastQCFastQC Report
Mon 10 Jun 2024
SRR6150362_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR6150362_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30227214
Sequences flagged as poor quality0
Sequence length90
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCATGCATATCACATAGTTAATCCAAGTCCATGACCATTAACTGGAGCC487330.16122226811905324No Hit
CACGATCACAAGAAAGACGTGGTCCTGACAGACAGACAATCCTATTCCCT426720.14117080059048778No Hit
CGATCACAAGAAAGACGTGGTCCTGACAGACAGACAATCCTATTCCCTAC408070.13500086379115192No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)