FastQCFastQC Report
Wed 9 Feb 2022
G85_M1_CGATGT_L008_R_1_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameG85_M1_CGATGT_L008_R_1_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17739788
Sequences flagged as poor quality0
Sequence length99
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC369740.2084241367484211TruSeq Adapter, Index 2 (100% over 50bp)
CTGGAATTGGACTTCTCAGTGAGACAGGATGGAATGCAGATCACAGAATT177770.10020976575368318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)