FastQCFastQC Report
Fri 23 Aug 2024
G230_M01_CKDL240026854-1A_HKM53DSXC_L1_2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameG230_M01_CKDL240026854-1A_HKM53DSXC_L1_2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6139735
Sequences flagged as poor quality0
Sequence length150
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGATCACAAGAAAGACGTGGTCCTGACAGACAGACAATCCTATTCCCT115930.18881922428248124No Hit
GAAAGACGTGGTCCTGACAGACAGACAATCCTATTCCCTACCAAAATGAA95640.15577219537976802No Hit
CTTTAATGTAGAAAAGATTAATGGGGAATGGCATACTATTATCCTGGCCT73150.11914194993757875No Hit
GGCAACTTTAGACTTTTTCTGGAGCAAATCCATGTCTTGGAGAATTCCTT66560.1084085876670573No Hit
CGATCACAAGAAAGACGTGGTCCTGACAGACAGACAATCCTATTCCCTAC62010.10099784436950454No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)