FastQCFastQC Report
Thu 30 May 2024
G224_M13_CKDL240018118-1A_HH7TVDSXC_L2_2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameG224_M13_CKDL240018118-1A_HH7TVDSXC_L2_2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6052697
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTGAGCCTCCAGTGTTGAGTGGAGACTTCTCACCAGGACTCCACCATC101780.16815644331774743No Hit
CTGTGATCTGCATTCCATCCTGTCTCACTGAGAAGTCCAATTCCAGTCTA93130.1538652934386109No Hit
GGAATCCTTAGAGAAAATATCATTGACCTATCCAATGCCAATCGCTGCCT88940.1469427595665205No Hit
GGGAAACCTTCCAGCTGATGGGGCTCTATGGCCGAGAACCAGATTTGAGT88020.14542277599556033No Hit
CGAGAATGAAGAATGGCCTGAGCCTCCAGTGTTGAGTGGAGACTTCTCAC85790.14173846799203726No Hit
GGAAACCTTCCAGCTGATGGGGCTCTATGGCCGAGAACCAGATTTGAGTT83230.137508948490235No Hit
CTGCATTCCATCCTGTCTCACTGAGAAGTCCAATTCCAGTCTATCCACAT77810.12855426267001305No Hit
GAGAAGTCCAATTCCAGTCTATCCACATGTTACCTAGGATACCTCATCAA76260.1259934207841562No Hit
CCAGATTTGAGTTCAGACATCAAGGAAAGGTTTGCACAACTATGTGAGAA75460.12467169593984302No Hit
CTTTCTTATGGCTCATCTCATTAACGAAAAGGATGGGGAAACCTTCCAGC73100.12077260764911907No Hit
CTTCTCACCAGGACTCCACCATCATCCCTTCCTATCCATACAGCATCCCC67930.11223096084274499No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)