FastQCFastQC Report
Thu 30 May 2024
G224_M09_CKDL240018118-1A_HH7TVDSXC_L2_2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameG224_M09_CKDL240018118-1A_HH7TVDSXC_L2_2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6990973
Sequences flagged as poor quality0
Sequence length150
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT510250.7298697906571804No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG296900.42469052591105705No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGCTTACCGTGTAGATC211020.3018463953443963Illumina Single End PCR Primer 1 (97% over 37bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA94790.1355891375921492No Hit
GGAGTCTAACGCGTGCGCGAGTCAGGGGCTCGTCCGAAAGCCGCCGTGGC74560.10665182085526578No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)