FastQCFastQC Report
Thu 5 Sep 2024
G216M72_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameG216M72_CKDL230039434-1A_22GGJKLT3_L2_1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12358587
Sequences flagged as poor quality0
Sequence length150
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGCTTTAAACTCTTTGGGGACATATGTTTCATCAACTGTCAGAGCAG212470.1719209485679876No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGTGTACAATCTGGGGG154600.12509520708152153TruSeq Adapter, Index 9 (97% over 36bp)
CTGAGTCTTCATGTCTTTTTTTCTCAGGGTAGCCTGAGAAGGTTGTGGTT135500.10964036584441246No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)