FastQCFastQC Report
Tue 26 Sep 2023
29_Waxman_I119_S29_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename29_Waxman_I119_S29_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28566057
Sequences flagged as poor quality0
Sequence length101
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGTCTCTTATACACATCTGACGCTGCCGACGAAACGCACGAGGTGTAG479180.16774453681164328No Hit
CCTGTCTCTTATACACATCTGACGCTGCCGACGAAACGCACGAGGTGTAG343290.12017409333041659No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)