FastQCFastQC Report
Thu 13 Oct 2022
G194M29_S49_L004_R1_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameG194M29_S49_L004_R1_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34821311
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGAGTCCTGGTGAGAAGTCTCCACTCAACACTGGAGGCTCAGGCCATT921400.2646080729125908No Hit
GTTTAGGCTAAGGCGTCTTTGCATCTAGTGACAAGGTTTGGACCCTCAGT768580.2207211555015835No Hit
GGATGATGGTGGAGTCCTGGTGAGAAGTCTCCACTCAACACTGGAGGCTC624410.17931834904205646No Hit
GTTTGGAGGAGGTGTTGGAAGGACTTGTGGATGTCAGCCTCCGATGTTTG563710.16188649531317187No Hit
CAGCGATTGGCATTGGATAGGTCAATGATATTTTCTCTAAGGATTCCATG491270.14108314302123776No Hit
GTCAGAGGCCAGGATAATAGTATGCCATTCCCCATTAATCTTTTCTACAT450280.12931161609624633No Hit
GTTTTGTACAGCAGTCAGCCAGTTCACCATAGTTTTCACGGAGGTTTGGA376470.10811482657847088No Hit
CTTAGGTATAGTAAATGTATTGAATCCATCATACGTCACAGAATATTCAC358100.10283932158671452No Hit
TGATGGTGGAGTCCTGGTGAGAAGTCTCCACTCAACACTGGAGGCTCAGG356270.10231378135073663No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)